|
Name |
Accession |
Description |
Interval |
E-value |
| rho |
PRK09376 |
transcription termination factor Rho; Provisional |
1-418 |
0e+00 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 236490 [Multi-domain] Cd Length: 416 Bit Score: 864.45 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 1 MNLTELKNRPVSELVKLSESLGLENQARLRKQDIIFSILKAHAKSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIY 80
Cdd:PRK09376 1 MNLSELKNKSLSELLELAEELGIENASRLRKQELIFAILKAQAEKGGDIFGEGVLEILPDGFGFLRSPDANYLPGPDDIY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 81 VSPSQIRRFNLRTGDSIGGKIRPPKDGERYFALLKVNTVNYDKPDNARNKILFENLTPLHANERMVMEAGNGatEDITAR 160
Cdd:PRK09376 81 VSPSQIRRFNLRTGDTVEGKIRPPKEGERYFALLKVETVNGEDPEKARNRPLFENLTPLYPNERLRLETGNP--EDLSTR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 161 ILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIARNHPECELMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV 240
Cdd:PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHV 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATAL 320
Cdd:PRK09376 239 QVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATAL 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 321 VDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTRREELLTKSDELQKMWILRKIVHPMGETDAMEFLI 400
Cdd:PRK09376 319 IDTGSRMDEVIFEEFKGTGNMELHLDRKLAEKRIFPAIDINRSGTRKEELLLSPEELQKVWILRKILSPMDEVEAMEFLL 398
|
410
....*....|....*...
gi 656276358 401 DKLAMTKTNDEFFDAMRR 418
Cdd:PRK09376 399 DKLKKTKTNEEFFDSMNR 416
|
|
| rho |
TIGR00767 |
transcription termination factor Rho; This RNA helicase, the transcription termination factor ... |
1-418 |
0e+00 |
|
transcription termination factor Rho; This RNA helicase, the transcription termination factor Rho, occurs in nearly all bacteria but is missing from the Cyanobacteria, the Mollicutes (Mycoplasmas), and various Lactobacillales including Streptococcus. It is also missing, of course, from the Archaea, which also lack Nus factors. Members of this family from Micrococcus luteus, Mycobacterium tuberculosis, and related species have a related but highly variable long, highly charged insert near the amino end. Members of this family differ in the specificity of RNA binding. [Transcription, Transcription factors]
Pssm-ID: 162030 [Multi-domain] Cd Length: 415 Bit Score: 795.43 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 1 MNLTELKNRPVSELVKLSESLGLENQARLRKQDIIFSILKAHAKSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIY 80
Cdd:TIGR00767 1 YNIEELKNMPLEELRKLAEQLGVENTSSLKKQELIFAILKAHAEQGGLIFGEGVLEILPDGFGFLRSPDSSYLPGPDDIY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 81 VSPSQIRRFNLRTGDSIGGKIRPPKDGERYFALLKVNTVNYDKPDNARNKILFENLTPLHANERMVMEagnGATEDITAR 160
Cdd:TIGR00767 81 VSPSQIRRFNLRTGDTIEGQIRSPKEGERYFALLKVESVNGDDPEKAKNRVLFENLTPLYPNERLRLE---TSTEDLSTR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 161 ILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIARNHPECELMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV 240
Cdd:TIGR00767 158 VLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHV 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATAL 320
Cdd:TIGR00767 238 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVTPASGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATAL 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 321 VDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTRREELLTKSDELQKMWILRKIVHPMGETDAMEFLI 400
Cdd:TIGR00767 318 IDTGSRMDEVIFEEFKGTGNMELHLDRKLADRRIFPAIDIKKSGTRKEELLLTPEELQKIWVLRKIISPMDSIEAMEFLI 397
|
410
....*....|....*...
gi 656276358 401 DKLAMTKTNDEFFDAMRR 418
Cdd:TIGR00767 398 SKLKKTKTNEEFLESMKR 415
|
|
| Rho |
COG1158 |
Transcription termination factor Rho [Transcription]; |
43-419 |
0e+00 |
|
Transcription termination factor Rho [Transcription];
Pssm-ID: 440772 [Multi-domain] Cd Length: 373 Bit Score: 793.46 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 43 AKSGEDIFGDGVLEILQDGFGFLRSgdSSYLAGPDDIYVSPSQIRRFNLRTGDSIGGKIRPPKDGERYFALLKVNTVNYD 122
Cdd:COG1158 1 AEDDGLIPVEGVLEILPDGYGFLRS--SNYLPGPDDIYVSPSQIRRFGLRTGDAVTGQVRPPKEGEKYFALLRVESVNGE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 123 KPDNARNKILFENLTPLHANERMVMEAGngaTEDITARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIARNHPEC 202
Cdd:COG1158 79 DPEEARKRPDFDNLTPLYPDERLRLETT---PDDLSTRVIDLVAPIGKGQRGLIVAPPKAGKTTLLQDIANAITANHPEV 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 203 ELMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Cdd:COG1158 156 HLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPAERHVQVAELVIERAKRLVELGKDVVILLDSITRLARAYNLVVPASG 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNR 362
Cdd:COG1158 236 RTLSGGVDANALYKPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNMELHLDRKLAEKRIFPAIDINK 315
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 656276358 363 SGTRREELLTKSDELQKMWILRKIVHPMGETDAMEFLIDKLAMTKTNDEFFDAMRRQ 419
Cdd:COG1158 316 SGTRREELLLSPEELEKVWILRRALSGMDPVEAMEFLLDRLKKTKSNAEFLESMNKT 372
|
|
| rho_factor_C |
cd01128 |
C-terminal ATP binding domain of transcription termination factor rho; Transcription ... |
156-404 |
0e+00 |
|
C-terminal ATP binding domain of transcription termination factor rho; Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal oligonucleotide/oligosaccharide binding fold (OB-fold) domain which binds cysteine-rich nucleotides, and a C-terminal ATP binding domain. This alignment is of the C-terminal ATP binding domain.
Pssm-ID: 410872 [Multi-domain] Cd Length: 249 Bit Score: 510.21 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 156 DITARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIARNHPECELMVLLIDERPEEVTEMQRLVKGEVIASTFDEP 235
Cdd:cd01128 1 ELSTRVIDLIAPIGKGQRGLIVAPPKAGKTTLLQNIANAIAKNHPEVELIVLLIDERPEEVTDMRRSVKGEVVASTFDEP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 236 ASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTI 315
Cdd:cd01128 81 PERHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKTLSGGVDANALHKPKRFFGAARNIEEGGSLTI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 316 IATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTRREELLTKSDELQKMWILRKIVHPMGETDA 395
Cdd:cd01128 161 IATALVDTGSRMDEVIFEEFKGTGNMELVLDRKLAEKRIFPAIDILKSGTRKEELLLTPEELQKIWLLRRILSPMDPIEA 240
|
....*....
gi 656276358 396 MEFLIDKLA 404
Cdd:cd01128 241 MEFLLKKLK 249
|
|
| Rho_RNA_bind |
pfam07497 |
Rho termination factor, RNA-binding domain; The Rho termination factor disengages newly ... |
53-125 |
3.83e-43 |
|
Rho termination factor, RNA-binding domain; The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers.
Pssm-ID: 462182 [Multi-domain] Cd Length: 72 Bit Score: 145.21 E-value: 3.83e-43
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 656276358 53 GVLEILQDGFGFLRSgdSSYLAGPDDIYVSPSQIRRFNLRTGDSIGGKIRPPKDGERYFALLKVNTVNYDKPD 125
Cdd:pfam07497 2 GILEILPDGYGFLRS--SNYLPGPDDIYVSPSQIRRFGLRTGDIVEGQVRPPKEGEKYFALLRVESVNGEDPE 72
|
|
| Rho_N |
smart00959 |
Rho termination factor, N-terminal domain; The Rho termination factor disengages newly ... |
5-47 |
2.31e-14 |
|
Rho termination factor, N-terminal domain; The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers. This domain is found to the N-terminus of the RNA binding domain.
Pssm-ID: 198027 [Multi-domain] Cd Length: 43 Bit Score: 66.63 E-value: 2.31e-14
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 656276358 5 ELKNRPVSELVKLSESLGLENQARLRKQDIIFSILKAHAKSGE 47
Cdd:smart00959 1 ELKKKTLSELLEIAKELGIENASRLRKQELIFAILKAQAKKGG 43
|
|
| BREX_3_BrxF |
NF033453 |
BREX-3 system P-loop-containing protein BrxF; This family of proteins that are about 150 amino ... |
175-267 |
7.49e-03 |
|
BREX-3 system P-loop-containing protein BrxF; This family of proteins that are about 150 amino acids in length includes BrxF from type 3 BREX (bacteriophage exclusion) systems. Most members have the P-loop motif GxxGxGKT, but the region is surprisingly poorly conserved in a sizable fraction of otherwise strongly similar proteins.
Pssm-ID: 468038 Cd Length: 149 Bit Score: 36.70 E-value: 7.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 175 LIVAPPKAGKTMLLQNIAQS-----IARNhpecelmvLLIDERPEEVTEMQrlvkgeviastfdepasRHVQVAEMViek 249
Cdd:NF033453 20 LLVGPPGSGKTALLRELAAKrgapvINVN--------LELSRRLLELPEKQ-----------------RALRAPRLL--- 71
|
90
....*....|....*...
gi 656276358 250 aKRLVEHKKDVVILLDSI 267
Cdd:NF033453 72 -DEIAEKSSGDVVLLDNI 88
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| rho |
PRK09376 |
transcription termination factor Rho; Provisional |
1-418 |
0e+00 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 236490 [Multi-domain] Cd Length: 416 Bit Score: 864.45 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 1 MNLTELKNRPVSELVKLSESLGLENQARLRKQDIIFSILKAHAKSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIY 80
Cdd:PRK09376 1 MNLSELKNKSLSELLELAEELGIENASRLRKQELIFAILKAQAEKGGDIFGEGVLEILPDGFGFLRSPDANYLPGPDDIY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 81 VSPSQIRRFNLRTGDSIGGKIRPPKDGERYFALLKVNTVNYDKPDNARNKILFENLTPLHANERMVMEAGNGatEDITAR 160
Cdd:PRK09376 81 VSPSQIRRFNLRTGDTVEGKIRPPKEGERYFALLKVETVNGEDPEKARNRPLFENLTPLYPNERLRLETGNP--EDLSTR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 161 ILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIARNHPECELMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV 240
Cdd:PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHV 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATAL 320
Cdd:PRK09376 239 QVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATAL 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 321 VDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTRREELLTKSDELQKMWILRKIVHPMGETDAMEFLI 400
Cdd:PRK09376 319 IDTGSRMDEVIFEEFKGTGNMELHLDRKLAEKRIFPAIDINRSGTRKEELLLSPEELQKVWILRKILSPMDEVEAMEFLL 398
|
410
....*....|....*...
gi 656276358 401 DKLAMTKTNDEFFDAMRR 418
Cdd:PRK09376 399 DKLKKTKTNEEFFDSMNR 416
|
|
| rho |
TIGR00767 |
transcription termination factor Rho; This RNA helicase, the transcription termination factor ... |
1-418 |
0e+00 |
|
transcription termination factor Rho; This RNA helicase, the transcription termination factor Rho, occurs in nearly all bacteria but is missing from the Cyanobacteria, the Mollicutes (Mycoplasmas), and various Lactobacillales including Streptococcus. It is also missing, of course, from the Archaea, which also lack Nus factors. Members of this family from Micrococcus luteus, Mycobacterium tuberculosis, and related species have a related but highly variable long, highly charged insert near the amino end. Members of this family differ in the specificity of RNA binding. [Transcription, Transcription factors]
Pssm-ID: 162030 [Multi-domain] Cd Length: 415 Bit Score: 795.43 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 1 MNLTELKNRPVSELVKLSESLGLENQARLRKQDIIFSILKAHAKSGEDIFGDGVLEILQDGFGFLRSGDSSYLAGPDDIY 80
Cdd:TIGR00767 1 YNIEELKNMPLEELRKLAEQLGVENTSSLKKQELIFAILKAHAEQGGLIFGEGVLEILPDGFGFLRSPDSSYLPGPDDIY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 81 VSPSQIRRFNLRTGDSIGGKIRPPKDGERYFALLKVNTVNYDKPDNARNKILFENLTPLHANERMVMEagnGATEDITAR 160
Cdd:TIGR00767 81 VSPSQIRRFNLRTGDTIEGQIRSPKEGERYFALLKVESVNGDDPEKAKNRVLFENLTPLYPNERLRLE---TSTEDLSTR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 161 ILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIARNHPECELMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV 240
Cdd:TIGR00767 158 VLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHV 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATAL 320
Cdd:TIGR00767 238 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVTPASGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATAL 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 321 VDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTRREELLTKSDELQKMWILRKIVHPMGETDAMEFLI 400
Cdd:TIGR00767 318 IDTGSRMDEVIFEEFKGTGNMELHLDRKLADRRIFPAIDIKKSGTRKEELLLTPEELQKIWVLRKIISPMDSIEAMEFLI 397
|
410
....*....|....*...
gi 656276358 401 DKLAMTKTNDEFFDAMRR 418
Cdd:TIGR00767 398 SKLKKTKTNEEFLESMKR 415
|
|
| Rho |
COG1158 |
Transcription termination factor Rho [Transcription]; |
43-419 |
0e+00 |
|
Transcription termination factor Rho [Transcription];
Pssm-ID: 440772 [Multi-domain] Cd Length: 373 Bit Score: 793.46 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 43 AKSGEDIFGDGVLEILQDGFGFLRSgdSSYLAGPDDIYVSPSQIRRFNLRTGDSIGGKIRPPKDGERYFALLKVNTVNYD 122
Cdd:COG1158 1 AEDDGLIPVEGVLEILPDGYGFLRS--SNYLPGPDDIYVSPSQIRRFGLRTGDAVTGQVRPPKEGEKYFALLRVESVNGE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 123 KPDNARNKILFENLTPLHANERMVMEAGngaTEDITARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIARNHPEC 202
Cdd:COG1158 79 DPEEARKRPDFDNLTPLYPDERLRLETT---PDDLSTRVIDLVAPIGKGQRGLIVAPPKAGKTTLLQDIANAITANHPEV 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 203 ELMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG 282
Cdd:COG1158 156 HLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPAERHVQVAELVIERAKRLVELGKDVVILLDSITRLARAYNLVVPASG 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNR 362
Cdd:COG1158 236 RTLSGGVDANALYKPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNMELHLDRKLAEKRIFPAIDINK 315
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 656276358 363 SGTRREELLTKSDELQKMWILRKIVHPMGETDAMEFLIDKLAMTKTNDEFFDAMRRQ 419
Cdd:COG1158 316 SGTRREELLLSPEELEKVWILRRALSGMDPVEAMEFLLDRLKKTKSNAEFLESMNKT 372
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
53-412 |
0e+00 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 607.67 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 53 GVLEILqDGFGFLRsgDSSYLAGPDDIYVSPSQIRRFNLRTGDSIGGKIRPPKDGER------YFALLKVNTVNYDKPDN 126
Cdd:PRK12678 298 GILDVL-DNYAFVR--TSGYLPGPNDVYVSMNQVRKNGLRKGDAVTGAVRAPREGEQgnqrqkFNPLVRLDSVNGMSPEE 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 127 ARNKILFENLTPLHANERMVMEagngaTE--DITARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIARNHPECEL 204
Cdd:PRK12678 375 AKKRPEFGKLTPLYPNERLRLE-----TEpkKLTTRVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITTNNPECHL 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 205 MVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKV 284
Cdd:PRK12678 450 MVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERAKRLVELGKDVVVLLDSITRLGRAYNLAAPASGRI 529
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 285 LTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSG 364
Cdd:PRK12678 530 LSGGVDSTALYPPKRFFGAARNIENGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELKLDRKLADKRIFPAVDVNASG 609
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 656276358 365 TRREELLTKSDELQKMWILRKIVHPMGETDAMEFLIDKLAMTKTNDEF 412
Cdd:PRK12678 610 TRKEELLLSPDELAIVHKLRRVLSGLDSQQAIDLLISRLKKTKSNYEF 657
|
|
| PRK12608 |
PRK12608 |
transcription termination factor Rho; Provisional |
52-416 |
0e+00 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237150 [Multi-domain] Cd Length: 380 Bit Score: 554.31 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 52 DGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDSIGGKIRPPkdgERYFALLKVNTVNYDKPDNARNKI 131
Cdd:PRK12608 20 LGVLEILGDGFGFLRSARRNYLPSPDDVFVPPALIRRFNLRTGDVVEGVARPR---ERYRVLVRVDSVNGTDPEKLARRP 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 132 LFENLTPLHANERMVMEAGngaTEDITARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIARNHPECELMVLLIDE 211
Cdd:PRK12608 97 HFDDLTPLHPRERLRLETG---SDDLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDE 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 212 RPEEVTEMQRLVKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDA 291
Cdd:PRK12608 174 RPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRLARAYNNEVESSGRTLSGGVDA 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 292 NALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTRREELL 371
Cdd:PRK12608 254 RALQRPKRLFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNMEIVLDRELADKRVFPAIDIAKSGTRREELL 333
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 656276358 372 TKSDELQKMWILRKIVHPMGETDAMEFLIDKLAMTKTNDEFFDAM 416
Cdd:PRK12608 334 LDSKELEKVRRLRRALASRKPVEAMEALLEKLRETPDNAEFLNSV 378
|
|
| rho_factor_C |
cd01128 |
C-terminal ATP binding domain of transcription termination factor rho; Transcription ... |
156-404 |
0e+00 |
|
C-terminal ATP binding domain of transcription termination factor rho; Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal oligonucleotide/oligosaccharide binding fold (OB-fold) domain which binds cysteine-rich nucleotides, and a C-terminal ATP binding domain. This alignment is of the C-terminal ATP binding domain.
Pssm-ID: 410872 [Multi-domain] Cd Length: 249 Bit Score: 510.21 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 156 DITARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIARNHPECELMVLLIDERPEEVTEMQRLVKGEVIASTFDEP 235
Cdd:cd01128 1 ELSTRVIDLIAPIGKGQRGLIVAPPKAGKTTLLQNIANAIAKNHPEVELIVLLIDERPEEVTDMRRSVKGEVVASTFDEP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 236 ASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTI 315
Cdd:cd01128 81 PERHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKTLSGGVDANALHKPKRFFGAARNIEEGGSLTI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 316 IATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTRREELLTKSDELQKMWILRKIVHPMGETDA 395
Cdd:cd01128 161 IATALVDTGSRMDEVIFEEFKGTGNMELVLDRKLAEKRIFPAIDILKSGTRKEELLLTPEELQKIWLLRRILSPMDPIEA 240
|
....*....
gi 656276358 396 MEFLIDKLA 404
Cdd:cd01128 241 MEFLLKKLK 249
|
|
| Rho_RNA_bind |
pfam07497 |
Rho termination factor, RNA-binding domain; The Rho termination factor disengages newly ... |
53-125 |
3.83e-43 |
|
Rho termination factor, RNA-binding domain; The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers.
Pssm-ID: 462182 [Multi-domain] Cd Length: 72 Bit Score: 145.21 E-value: 3.83e-43
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 656276358 53 GVLEILQDGFGFLRSgdSSYLAGPDDIYVSPSQIRRFNLRTGDSIGGKIRPPKDGERYFALLKVNTVNYDKPD 125
Cdd:pfam07497 2 GILEILPDGYGFLRS--SNYLPGPDDIYVSPSQIRRFGLRTGDIVEGQVRPPKEGEKYFALLRVESVNGEDPE 72
|
|
| Rho_CSD |
cd04459 |
Rho_CSD: Rho protein cold-shock domain (CSD). Rho protein is a transcription termination ... |
51-118 |
2.27e-39 |
|
Rho_CSD: Rho protein cold-shock domain (CSD). Rho protein is a transcription termination factor in most bacteria. In bacteria, there are two distinct mechanisms for mRNA transcription termination. In intrinsic termination, RNA polymerase and nascent mRNA are released from DNA template by an mRNA stem loop structure, which resembles the transcription termination mechanism used by eukaryotic pol III. The second mechanism is mediated by Rho factor. Rho factor terminates transcription by using energy from ATP hydrolysis to forcibly dissociate the transcripts from RNA polymerase. Rho protein contains an N-terminal S1-like domain, which binds single-stranded RNA. Rho has a C-terminal ATPase domain which hydrolyzes ATP to provide energy to strip RNA polymerase and mRNA from the DNA template. Rho functions as a homohexamer.
Pssm-ID: 239906 [Multi-domain] Cd Length: 68 Bit Score: 135.45 E-value: 2.27e-39
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 656276358 51 GDGVLEILQDGFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDSIGGKIRPPKDGERYFALLKVNT 118
Cdd:cd04459 1 GSGVLEILPDGFGFLRSSGYNYLPGPDDIYVSPSQIRRFNLRTGDTVVGQIRPPKEGERYFALLKVEA 68
|
|
| ATP-synt_ab |
pfam00006 |
ATP synthase alpha/beta family, nucleotide-binding domain; This entry includes the ATP ... |
160-363 |
5.32e-23 |
|
ATP synthase alpha/beta family, nucleotide-binding domain; This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.
Pssm-ID: 425417 [Multi-domain] Cd Length: 212 Bit Score: 95.89 E-value: 5.32e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 160 RILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAqsiarNHPECELMVL-LIDERPEEVTEMQRLVKGE-------VIAST 231
Cdd:pfam00006 3 RAIDGLLPIGRGQRIGIFGGSGVGKTVLAGMIA-----RQASADVVVYaLIGERGREVREFIEELLGSgalkrtvVVVAT 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 232 FDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVL-----TGGVD---ANALHRpkrffgA 303
Cdd:pfam00006 78 SDEPPLARYRAPYTALTIAEYFRDQGKDVLLIMDSLTRFAEALREISLALGEPPgregyPPSVFsllARLLER------A 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 304 ARNVEEGGSLTIIATALVDtGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRS 363
Cdd:pfam00006 152 GRVKGKGGSITALPTVLVP-GDDITDPIPDNTRSILDGQIVLSRDLAEKGHYPAIDVLAS 210
|
|
| ATPase_flagellum-secretory_path_III |
cd01136 |
Flagellum-specific ATPase/type III secretory pathway virulence-related protein; ... |
160-366 |
2.99e-21 |
|
Flagellum-specific ATPase/type III secretory pathway virulence-related protein; Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton-driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Pssm-ID: 410880 [Multi-domain] Cd Length: 265 Bit Score: 92.62 E-value: 2.99e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 160 RILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAqsiarNHPECELMVL-LIDERPEEVTEMQRLVKGE-------VIAST 231
Cdd:cd01136 56 RAIDGLLTCGEGQRIGIFAGSGVGKSTLLGMIA-----RNTDADVNVIaLIGERGREVREFIEKDLGEeglkrsvLVVAT 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 232 FDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLT-GGVDANALHRPKRFFGAARNVEEg 310
Cdd:cd01136 131 SDESPLLRVRAAYTATAIAEYFRDQGKKVLLLMDSLTRFAMAQREVGLAAGEPPTrRGYPPSVFALLPRLLERAGNGEK- 209
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 656276358 311 GSLTIIATALVDtGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTR 366
Cdd:cd01136 210 GSITAFYTVLVE-GDDFNDPIADEVRSILDGHIVLSRRLAERGHYPAIDVLASISR 264
|
|
| PRK07594 |
PRK07594 |
EscN/YscN/HrcN family type III secretion system ATPase; |
160-385 |
1.92e-19 |
|
EscN/YscN/HrcN family type III secretion system ATPase;
Pssm-ID: 136438 [Multi-domain] Cd Length: 433 Bit Score: 89.63 E-value: 1.92e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 160 RILDLASPIGKGQRGLIVAPPKAGKTMLLqniaqSIARNHPECELMVL-LIDERPEEVTEM----------QRLVkgeVI 228
Cdd:PRK07594 144 RAIDSVATCGEGQRVGIFSAPGVGKSTLL-----AMLCNAPDADSNVLvLIGERGREVREFidftlseetrKRCV---IV 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 229 ASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVdanalHRPKRFFGAARNVE 308
Cdd:PRK07594 216 VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE-----YPPGVFSALPRLLE 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 309 -----EGGSLTIIATALVDtGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTRREELLTKSDELQKMWIL 383
Cdd:PRK07594 291 rtgmgEKGSITAFYTVLVE-GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAIL 369
|
..
gi 656276358 384 RK 385
Cdd:PRK07594 370 RR 371
|
|
| PRK06820 |
PRK06820 |
EscN/YscN/HrcN family type III secretion system ATPase; |
160-400 |
4.84e-17 |
|
EscN/YscN/HrcN family type III secretion system ATPase;
Pssm-ID: 180712 [Multi-domain] Cd Length: 440 Bit Score: 82.55 E-value: 4.84e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 160 RILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAqsiarNHPECELMVL-LIDERPEEVTEM----------QRLVkgeVI 228
Cdd:PRK06820 152 RAIDGILSCGEGQRIGIFAAAGVGKSTLLGMLC-----ADSAADVMVLaLIGERGREVREFleqvltpearARTV---VV 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 229 ASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKV-LTGGVDANALHRPKRFFGAARNV 307
Cdd:PRK06820 224 VATSDRPALERLKGLSTATTIAEYFRDRGKKVLLMADSLTRYARAAREIGLAAGEPpAAGSFPPSVFANLPRLLERTGNS 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 308 EEgGSLTIIATALVDtGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTRREELLTKSDELQKMWILRKIv 387
Cdd:PRK06820 304 DR-GSITAFYTVLVE-GDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSAGQLAMAQKLRRM- 380
|
250
....*....|...
gi 656276358 388 hpMGETDAMEFLI 400
Cdd:PRK06820 381 --LACYQEIELLV 391
|
|
| Rho_N |
smart00959 |
Rho termination factor, N-terminal domain; The Rho termination factor disengages newly ... |
5-47 |
2.31e-14 |
|
Rho termination factor, N-terminal domain; The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers. This domain is found to the N-terminus of the RNA binding domain.
Pssm-ID: 198027 [Multi-domain] Cd Length: 43 Bit Score: 66.63 E-value: 2.31e-14
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 656276358 5 ELKNRPVSELVKLSESLGLENQARLRKQDIIFSILKAHAKSGE 47
Cdd:smart00959 1 ELKKKTLSELLEIAKELGIENASRLRKQELIFAILKAQAKKGG 43
|
|
| fliI |
PRK07196 |
flagellar protein export ATPase FliI; |
156-381 |
2.86e-14 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 180875 [Multi-domain] Cd Length: 434 Bit Score: 74.16 E-value: 2.86e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 156 DITARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQsiarnHPECELMVL-LIDERPEEVTEM-------QRLVKGEV 227
Cdd:PRK07196 140 DVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITR-----YTQADVVVVgLIGERGREVKEFiehslqaAGMAKSVV 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 228 IASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK-VLTGGVDANALHRPKRFFGAARN 306
Cdd:PRK07196 215 VAAPADESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREIALSLGEpPATKGYPPSAFSIIPRLAESAGN 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 307 VEEGGSLTIIATALVDTGSKMDEVIyEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTRREELLTKSD------ELQKM 380
Cdd:PRK07196 295 SSGNGTMTAIYTVLAEGDDQQDPIV-DCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMSQVIGSQqakaasLLKQC 373
|
.
gi 656276358 381 W 381
Cdd:PRK07196 374 Y 374
|
|
| RecA-like_ion-translocating_ATPases |
cd19476 |
RecA-like domain of ion-translocating ATPases; RecA-like NTPases. This family includes the ... |
160-366 |
3.32e-14 |
|
RecA-like domain of ion-translocating ATPases; RecA-like NTPases. This family includes the NTP-binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410884 [Multi-domain] Cd Length: 270 Bit Score: 72.49 E-value: 3.32e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 160 RILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIARNHPECeLMVLLIDERPEEVTE-MQRLVKGE------VIASTF 232
Cdd:cd19476 56 KVIDLLAPYGRGQKIGIFGGSGVGKTVLAMQLARNQAKAHAGV-VVFAGIGERGREVNDlYEEFTKSGamertvVVANTA 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 233 DEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTV------IPSS----GKVLTggvDANALHrpKRffg 302
Cdd:cd19476 135 NDPPGARMRVPYTGLTIAEYFRDNGQHVLLIIDDISRYAEALREMsallgePPGRegypPYLFT---KLATLY--ER--- 206
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 656276358 303 AARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTgNMELHLNRKIAEKRVFPAIDFNRSGTR 366
Cdd:cd19476 207 AGKVKDGGGSITAIPAVSTPGDDLTDPIPDNTFAIL-DGQIVLSRELARKGIYPAINVLDSTSR 269
|
|
| CSP |
smart00357 |
Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria ... |
53-116 |
8.78e-14 |
|
Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor.
Pssm-ID: 214633 [Multi-domain] Cd Length: 64 Bit Score: 65.70 E-value: 8.78e-14
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 656276358 53 GVLEILQDGFGFLRSGDssylaGPDDIYVSPSQI--RRFNLRTGDSIGGKIRPPKDGERYFALLKV 116
Cdd:smart00357 2 GVVKWFNKGFGFIRPDD-----GGKDVFVHPSQIqgGLKSLREGDEVEFKVVSPEGGEKPEAENVV 62
|
|
| fliI |
PRK08927 |
flagellar protein export ATPase FliI; |
138-366 |
1.55e-13 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 236351 [Multi-domain] Cd Length: 442 Bit Score: 71.93 E-value: 1.55e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 138 PLHANERMvmeagnGATEDITARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIArnhpeCELMVL-LIDERPEEV 216
Cdd:PRK08927 131 PAHSRARV------GEPLDLGVRALNTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNAD-----ADVSVIgLIGERGREV 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 217 TEM-------QRLVKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSG-----KV 284
Cdd:PRK08927 200 QEFlqddlgpEGLARSVVVVATSDEPALMRRQAAYLTLAIAEYFRDQGKDVLCLMDSVTRFAMAQREIGLSAGeppttKG 279
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 285 LTGGVDANAlhrPKRFFGAARNVEEGGSLTIIATALVDtGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSG 364
Cdd:PRK08927 280 YTPTVFAEL---PRLLERAGPGPIGEGTITGLFTVLVD-GDDHNEPVADAVRGILDGHIVMERAIAERGRYPAINVLKSV 355
|
..
gi 656276358 365 TR 366
Cdd:PRK08927 356 SR 357
|
|
| Rho_N |
pfam07498 |
Rho termination factor, N-terminal domain; The Rho termination factor disengages newly ... |
5-47 |
1.91e-13 |
|
Rho termination factor, N-terminal domain; The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers. This domain is found to the N-terminus of the RNA binding domain (pfam07497).
Pssm-ID: 429493 [Multi-domain] Cd Length: 43 Bit Score: 63.94 E-value: 1.91e-13
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 656276358 5 ELKNRPVSELVKLSESLGLENQARLRKQDIIFSILKAHAKSGE 47
Cdd:pfam07498 1 ELKEKTLSELREIAKELGIENYSRLRKQELIFAILKAQAEKGG 43
|
|
| fliI |
PRK07721 |
flagellar protein export ATPase FliI; |
160-366 |
2.24e-13 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 181092 [Multi-domain] Cd Length: 438 Bit Score: 71.29 E-value: 2.24e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 160 RILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQsiarnHPECELMVL-LIDERPEEVTE-MQR------LVKGEVIAST 231
Cdd:PRK07721 147 RAIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIAR-----NTSADLNVIaLIGERGREVREfIERdlgpegLKRSIVVVAT 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 232 FDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTV-----IPSSGKVLTGGVDANAlhrPKRFFGAARN 306
Cdd:PRK07721 222 SDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIglavgEPPTTKGYTPSVFAIL---PKLLERTGTN 298
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 307 veEGGSLTIIATALVDtGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTR 366
Cdd:PRK07721 299 --ASGSITAFYTVLVD-GDDMNEPIADTVRGILDGHFVLDRQLANKGQYPAINVLKSVSR 355
|
|
| PRK06936 |
PRK06936 |
EscN/YscN/HrcN family type III secretion system ATPase; |
160-387 |
9.08e-13 |
|
EscN/YscN/HrcN family type III secretion system ATPase;
Pssm-ID: 180762 [Multi-domain] Cd Length: 439 Bit Score: 69.40 E-value: 9.08e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 160 RILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQsiarnHPECELMVL-LIDERPEEVTEM-------QRLVKGEVIAST 231
Cdd:PRK06936 151 RVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIR-----SAEVDVTVLaLIGERGREVREFiesdlgeEGLRKAVLVVAT 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 232 FDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTggvdanalHR---PKRFFGAARNVE 308
Cdd:PRK06936 226 SDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVTRFARAQREIGLAAGEPPT--------RRgypPSVFAALPRLME 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 309 -----EGGSLTIIATALVDtGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTRREELLTKSDELQKMWIL 383
Cdd:PRK06936 298 ragqsDKGSITALYTVLVE-GDDMTEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSKEHKTWAGRL 376
|
....
gi 656276358 384 RKIV 387
Cdd:PRK06936 377 RELL 380
|
|
| PRK08149 |
PRK08149 |
FliI/YscN family ATPase; |
169-401 |
2.27e-12 |
|
FliI/YscN family ATPase;
Pssm-ID: 236166 [Multi-domain] Cd Length: 428 Bit Score: 68.10 E-value: 2.27e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 169 GKGQRGLIVAPPKAGKTMLLQNIAqsiarNHPECELMVL-LIDERPEEVTE----MQRLVKGE---VIASTFDEPASRHV 240
Cdd:PRK08149 149 GVGQRMGIFASAGCGKTSLMNMLI-----EHSEADVFVIgLIGERGREVTEfvesLRASSRREkcvLVYATSDFSSVDRC 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKV-LTGGVDANA-------LHRPKRFfgaarnveEGGS 312
Cdd:PRK08149 224 NAALVATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALAAGELpARRGYPASVfdslprlLERPGAT--------LAGS 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 313 LTIIATALVDTGSKMDeVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTRREELLTKSDELQKMWILRKIvhpMGE 392
Cdd:PRK08149 296 ITAFYTVLLESEEEPD-PIGDEIRSILDGHIYLSRKLAAKGHYPAIDVLKSVSRVFGQVTDPKHRQLAAAFRKL---LTR 371
|
....*....
gi 656276358 393 TDAMEFLID 401
Cdd:PRK08149 372 LEELQLFID 380
|
|
| fliI |
PRK06793 |
flagellar protein export ATPase FliI; |
138-411 |
2.74e-12 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 180696 [Multi-domain] Cd Length: 432 Bit Score: 68.08 E-value: 2.74e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 138 PLHANERM----VMEAGngateditARILDLASPIGKGQRGLIVAPPKAGKTMLLQniaqSIARNHPECELMVLLIDERP 213
Cdd:PRK06793 127 PIHAFEREeitdVFETG--------IKSIDSMLTIGIGQKIGIFAGSGVGKSTLLG----MIAKNAKADINVISLVGERG 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 214 EEVTEMQRLVKGE-------VIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTV------IPS 280
Cdd:PRK06793 195 REVKDFIRKELGEegmrksvVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADARRSVdiavkeLPI 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 281 SGK-VLTGGVDANALHRPKRffgaarnvEEGGSLTIIATALVDtGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAID 359
Cdd:PRK06793 275 GGKtLLMESYMKKLLERSGK--------TQKGSITGIYTVLVD-GDDLNGPVPDLARGILDGHIVLKRELATLSHYPAIS 345
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 656276358 360 FNRSGTRREELLTKSDELQKMWILRKIVHPMGETDamefLIDKLAMTKTNDE 411
Cdd:PRK06793 346 VLDSVSRIMEEIVSPNHWQLANEMRKILSIYKENE----LYFKLGTIQENAE 393
|
|
| FliI |
COG1157 |
Flagellar biosynthesis/type III secretory pathway ATPase FliI [Cell motility, Intracellular ... |
160-363 |
1.19e-11 |
|
Flagellar biosynthesis/type III secretory pathway ATPase FliI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440771 [Multi-domain] Cd Length: 433 Bit Score: 65.82 E-value: 1.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 160 RILDLASPIGKGQR-GlIVAPPKAGKTMLLQniaqSIARNhPECELMVL-LIDERPEEVTE----------MQRLVkgeV 227
Cdd:COG1157 146 RAIDGLLTVGRGQRiG-IFAGSGVGKSTLLG----MIARN-TEADVNVIaLIGERGREVREfieddlgeegLARSV---V 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 228 IASTFDEPASRHVQVAEMviekAKRLVEH----KKDVVILLDSITRLARA----------------YntviPSSgkvltg 287
Cdd:COG1157 217 VVATSDEPPLMRLRAAYT----ATAIAEYfrdqGKNVLLLMDSLTRFAMAqreiglaageppatrgY----PPS------ 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 288 gvdanalhrpkrFFGA-ARNVE-----EGGSLTIIATALVDtGSKMDEVIYEEFKGT--GnmelH--LNRKIAEKRVFPA 357
Cdd:COG1157 283 ------------VFALlPRLLEragngGKGSITAFYTVLVE-GDDMNDPIADAVRGIldG----HivLSRKLAERGHYPA 345
|
....*.
gi 656276358 358 IDFNRS 363
Cdd:COG1157 346 IDVLAS 351
|
|
| fliI |
PRK06002 |
flagellar protein export ATPase FliI; |
160-366 |
1.72e-11 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 235666 [Multi-domain] Cd Length: 450 Bit Score: 65.40 E-value: 1.72e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 160 RILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSIARNhpecELMVLLIDERPEEVTEM------QRLVKGEVIASTFD 233
Cdd:PRK06002 154 RVIDIFTPLCAGQRIGIFAGSGVGKSTLLAMLARADAFD----TVVIALVGERGREVREFledtlaDNLKKAVAVVATSD 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 234 E-PASRhvqvaEMVIEKAKRLVEHKKD----VVILLDSITRLARAYNTVIPSSGKvltggvDANALHRPKRFFG------ 302
Cdd:PRK06002 230 EsPMMR-----RLAPLTATAIAEYFRDrgenVLLIVDSVTRFAHAAREVALAAGE------PPVARGYPPSVFSelprll 298
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 656276358 303 --AARNVEEGGSLTIIATALVDtGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTR 366
Cdd:PRK06002 299 erAGPGAEGGGSITGIFSVLVD-GDDHNDPVADSIRGTLDGHIVLDRAIAEQGRYPAVDPLASISR 363
|
|
| fliI |
PRK05688 |
flagellar protein export ATPase FliI; |
168-380 |
3.57e-09 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 168181 [Multi-domain] Cd Length: 451 Bit Score: 58.20 E-value: 3.57e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 168 IGKGQRGLIVAPPKAGKTMLLqniaqSIARNHPECELMVL-LIDERPEEVTEMQRLVKGE-------VIASTFDEPASRH 239
Cdd:PRK05688 165 VGRGQRLGLFAGTGVGKSVLL-----GMMTRFTEADIIVVgLIGERGREVKEFIEHILGEeglkrsvVVASPADDAPLMR 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 240 VQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKV-LTGGVDANALHRPKRFFGAARNVEEG-GSLTIIA 317
Cdd:PRK05688 240 LRAAMYCTRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPpATKGYPPSVFAKLPKLVERAGNAEPGgGSITAFY 319
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 656276358 318 TALVDtGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTRREELLTKSDELQKM 380
Cdd:PRK05688 320 TVLSE-GDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVMPQVVDPEHLRRA 381
|
|
| PRK05922 |
PRK05922 |
type III secretion system ATPase; Validated |
160-314 |
5.10e-07 |
|
type III secretion system ATPase; Validated
Pssm-ID: 102061 [Multi-domain] Cd Length: 434 Bit Score: 51.44 E-value: 5.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 160 RILDLASPIGKGQRGLIVAPPKAGKTMLLQNIA----QSIArnhpecelMVLLIDERPEEVTE----------MQRLVkg 225
Cdd:PRK05922 146 KAIDAFLTLGKGQRIGVFSEPGSGKSSLLSTIAkgskSTIN--------VIALIGERGREVREyieqhkeglaAQRTI-- 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 226 eVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVL-TGGVDANALHRPKRFFGAA 304
Cdd:PRK05922 216 -IIASPAHETAPTKVIAGRAAMTIAEYFRDQGHRVLFIMDSLSRWIAALQEVALARGETLsAHHYAASVFHHVSEFTERA 294
|
170
....*....|
gi 656276358 305 RNvEEGGSLT 314
Cdd:PRK05922 295 GN-NDKGSIT 303
|
|
| RecA-like_superfamily |
cd01120 |
RecA-like_NTPases; RecA-like NTPases. This superfamily includes the NTP binding domain of F1 ... |
174-336 |
5.32e-07 |
|
RecA-like_NTPases; RecA-like NTPases. This superfamily includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410865 [Multi-domain] Cd Length: 119 Bit Score: 48.27 E-value: 5.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 174 GLIVAPPKAGKTMLLQNIAQSIARNhpecelmvlliderpeevtemqrlVKGEVIASTFDepasrhvqvaeMVIEKAKRL 253
Cdd:cd01120 1 ILITGPPGSGKTTLLLQFAEQALLS------------------------DEPVIFISFLD-----------TILEAIEDL 45
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 254 VEHKKDVVILLDSITRLARAYntvipssgkvlTGGVDANALHRPKRFFGAARNveegGSLTIIATALVDT------GSKM 327
Cdd:cd01120 46 IEEKKLDIIIIDSLSSLARAS-----------QGDRSSELLEDLAKLLRAARN----TGITVIATIHSDKfdidrgGSSN 110
|
....*....
gi 656276358 328 DEVIYEEFK 336
Cdd:cd01120 111 DERLLKSLR 119
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
170-319 |
9.13e-06 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 45.44 E-value: 9.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 170 KGQRGLIVAPPKAGKTMLLQNIAQSIARNHPEcelmVLLIDerPEEVTEMQRLVKGEVIASTFDEPASRhvqvaEMVIEK 249
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGG----VIYID--GEDILEEVLDQLLLIIVGGKKASGSG-----ELRLRL 69
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 250 AKRLVEHKKDVVILLDSITRLARAyNTVIPSSGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATA 319
Cdd:smart00382 70 ALALARKLKPDVLILDEITSLLDA-EQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRF 138
|
|
| fliI |
PRK07960 |
flagellum-specific ATP synthase FliI; |
156-366 |
1.23e-05 |
|
flagellum-specific ATP synthase FliI;
Pssm-ID: 181182 [Multi-domain] Cd Length: 455 Bit Score: 47.09 E-value: 1.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 156 DITARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQsiarnHPECELMVL-LIDERPEEVTEMQRLVKGE-------V 227
Cdd:PRK07960 160 DTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMAR-----YTQADVIVVgLIGERGREVKDFIENILGAegrarsvV 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 228 IASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGK-VLTGGVDANALHR-PKRFFGAAR 305
Cdd:PRK07960 235 IAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEpPATKGYPPSVFAKlPALVERAGN 314
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 656276358 306 NVEEGGSLTIIATALVDtGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTR 366
Cdd:PRK07960 315 GISGGGSITAFYTVLTE-GDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISR 374
|
|
| fliI |
PRK08472 |
flagellar protein export ATPase FliI; |
169-366 |
9.65e-04 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 181439 [Multi-domain] Cd Length: 434 Bit Score: 41.21 E-value: 9.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 169 GKGQRGLIVAPPKAGKTMLLQniaqSIARNHPECELMVLLIDERPEEVTE-MQRLVKGE------VIASTFDEPASRH-- 239
Cdd:PRK08472 155 GKGQKLGIFAGSGVGKSTLMG----MIVKGCLAPIKVVALIGERGREIPEfIEKNLGGDlentviVVATSDDSPLMRKyg 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 240 ----VQVAEMVIEKAKrlvehkkDVVILLDSITRLARAYNTVIPSSGKVLTG-GVDANALHRPKRFFGAARNVEEGGSLT 314
Cdd:PRK08472 231 afcaMSVAEYFKNQGL-------DVLFIMDSVTRFAMAQREIGLALGEPPTSkGYPPSVLSLLPQLMERAGKEEGKGSIT 303
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 656276358 315 IIATALVDtGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTR 366
Cdd:PRK08472 304 AFFTVLVE-GDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINILNSASR 354
|
|
| RepA |
COG3598 |
RecA-family ATPase [Replication, recombination and repair]; |
168-270 |
2.20e-03 |
|
RecA-family ATPase [Replication, recombination and repair];
Pssm-ID: 442817 [Multi-domain] Cd Length: 313 Bit Score: 39.88 E-value: 2.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 168 IGKGQRGLIVAPPKAGKTMLLQNIAQSIARNHP----ECE-LMVLLID-ERPEEVTE--MQRLVKG-----EVIASTFDE 234
Cdd:COG3598 10 LPEGGVTLLAGPPGTGKSFLALQLAAAVAAGGPwlgrRVPpGKVLYLAaEDDRGELRrrLKALGADlglpfADLDGRLRL 89
|
90 100 110
....*....|....*....|....*....|....*.
gi 656276358 235 PASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRL 270
Cdd:COG3598 90 LSLAGDLDDTDDLEALERAIEEEGPDLVVIDPLARV 125
|
|
| VacB |
COG0557 |
Exoribonuclease R [Transcription]; |
3-110 |
2.37e-03 |
|
Exoribonuclease R [Transcription];
Pssm-ID: 440323 [Multi-domain] Cd Length: 711 Bit Score: 40.09 E-value: 2.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 3 LTELKNRPVSeLVKLSESLGLENQARLRKqdiIFSILKAHAKSGEDIFGD--------------GVLEILQDGFGFLRSG 68
Cdd:COG0557 12 LKEDAYKPLS-KKELAKALGLKDEESREA---LKRRLRALEREGQLVKTRrgryrlpekldlveGRVRGHRDGFGFVIPD 87
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 656276358 69 DssylaGPDDIYVSPSQIRrfNLRTGDSIGGKIRPPKDGERY 110
Cdd:COG0557 88 D-----GEEDIFIPPRELN--GALHGDRVLVRVTKEDRRGRP 122
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
174-265 |
4.20e-03 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 37.32 E-value: 4.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 174 GLIVAPPKAGKTMLLQNIAQSIARNHPECELMVLliderPEEVTEMQRLvkgEVIASTFDEPASRHVQVAEMVIEKAKRL 253
Cdd:pfam13401 8 LVLTGESGTGKTTLLRRLLEQLPEVRDSVVFVDL-----PSGTSPKDLL---RALLRALGLPLSGRLSKEELLAALQQLL 79
|
90
....*....|..
gi 656276358 254 VEHKKDVVILLD 265
Cdd:pfam13401 80 LALAVAVVLIID 91
|
|
| BREX_3_BrxF |
NF033453 |
BREX-3 system P-loop-containing protein BrxF; This family of proteins that are about 150 amino ... |
175-267 |
7.49e-03 |
|
BREX-3 system P-loop-containing protein BrxF; This family of proteins that are about 150 amino acids in length includes BrxF from type 3 BREX (bacteriophage exclusion) systems. Most members have the P-loop motif GxxGxGKT, but the region is surprisingly poorly conserved in a sizable fraction of otherwise strongly similar proteins.
Pssm-ID: 468038 Cd Length: 149 Bit Score: 36.70 E-value: 7.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276358 175 LIVAPPKAGKTMLLQNIAQS-----IARNhpecelmvLLIDERPEEVTEMQrlvkgeviastfdepasRHVQVAEMViek 249
Cdd:NF033453 20 LLVGPPGSGKTALLRELAAKrgapvINVN--------LELSRRLLELPEKQ-----------------RALRAPRLL--- 71
|
90
....*....|....*...
gi 656276358 250 aKRLVEHKKDVVILLDSI 267
Cdd:NF033453 72 -DEIAEKSSGDVVLLDNI 88
|
|
| |
