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Conserved domains on  [gi|697053297|ref|WP_033145903|]
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MULTISPECIES: flagellar type III secretion system pore protein FliP [Enterobacter]

Protein Classification

flagellar type III secretion system pore protein FliP( domain architecture ID 10003557)

flagellar type III secretion system pore protein FliP plays a role in the flagellum-specific transport system

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FliP COG1338
Flagellar biosynthesis protein FliP [Cell motility];
2-244 9.37e-136

Flagellar biosynthesis protein FliP [Cell motility];


:

Pssm-ID: 440949  Cd Length: 249  Bit Score: 381.77  E-value: 9.37e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697053297   2 RRLLSLTLAGVGLFAPAVYAQ--LPGL-VSTPLAGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIIIVFGLLRNAL 78
Cdd:COG1338    4 RLLALLLLLALLLLPAPALAQpgLPSLsLTLGGAGGGQTYSLSLQILLLLTVLSLAPAILLMMTSFTRIIIVLSFLRQAL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697053297  79 GTPSAPPNQVLLGLALFLTFFIMSPVIDKIYTDAYQPFSEDKISMQEALDKGAQPLREFMLRQTREADLALFARLSNTGE 158
Cdd:COG1338   84 GTQQTPPNQVLIGLALFLTFFVMAPVFDQIYDDALQPYLAGEITQEEALERASEPLREFMLKQTREKDLALFADLAGEPP 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697053297 159 MQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKIMLFVLVDGWQLLVSS 238
Cdd:COG1338  164 PETPEDVPLRVLIPAFVISELKTAFQIGFLIFLPFLVIDLVVASVLMSMGMMMLPPVMISLPFKLLLFVLVDGWNLLVGS 243


                 ....*.
gi 697053297 239 LAQSFY 244
Cdd:COG1338  244 LVRSFG 249
 
Name Accession Description Interval E-value
FliP COG1338
Flagellar biosynthesis protein FliP [Cell motility];
2-244 9.37e-136

Flagellar biosynthesis protein FliP [Cell motility];


Pssm-ID: 440949  Cd Length: 249  Bit Score: 381.77  E-value: 9.37e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697053297   2 RRLLSLTLAGVGLFAPAVYAQ--LPGL-VSTPLAGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIIIVFGLLRNAL 78
Cdd:COG1338    4 RLLALLLLLALLLLPAPALAQpgLPSLsLTLGGAGGGQTYSLSLQILLLLTVLSLAPAILLMMTSFTRIIIVLSFLRQAL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697053297  79 GTPSAPPNQVLLGLALFLTFFIMSPVIDKIYTDAYQPFSEDKISMQEALDKGAQPLREFMLRQTREADLALFARLSNTGE 158
Cdd:COG1338   84 GTQQTPPNQVLIGLALFLTFFVMAPVFDQIYDDALQPYLAGEITQEEALERASEPLREFMLKQTREKDLALFADLAGEPP 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697053297 159 MQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKIMLFVLVDGWQLLVSS 238
Cdd:COG1338  164 PETPEDVPLRVLIPAFVISELKTAFQIGFLIFLPFLVIDLVVASVLMSMGMMMLPPVMISLPFKLLLFVLVDGWNLLVGS 243


                 ....*.
gi 697053297 239 LAQSFY 244
Cdd:COG1338  244 LVRSFG 249
fliP PRK05699
flagellar biosynthesis protein FliP; Reviewed
 1-244 1.01e-129

flagellar biosynthesis protein FliP; Reviewed


Pssm-ID: 235566  Cd Length: 245  Bit Score: 366.44  E-value: 1.01e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697053297   1 MRRLLSLTLAGVGLFAPAVYAQLPGLVSTPLAGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIIIVFGLLRNALGT 80
Cdd:PRK05699   2 MRRLLALALLLLALASAAAAAPLPGLNLLPGANGGQEYSLSLQLLLLLTVLSLAPAILLMMTSFTRIIIVLSLLRQALGT 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697053297  81 PSAPPNQVLLGLALFLTFFIMSPVIDKIYTDAYQPFSEDKISMQEALDKGAQPLREFMLRQTREADLALFARLSNTgEMQ 160
Cdd:PRK05699  82 QQTPPNQVLIGLALFLTFFIMSPVFDKIYDDAIQPYLDEKITLEEALERAAAPLREFMLKQTREKDLALFAKLAGE-PPK 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697053297 161 GPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKIMLFVLVDGWQLLVSSLA 240
Cdd:PRK05699 161 TPEDVPLSVLVPAFVLSELKTAFQIGFLIFLPFLIIDLVVASVLMSMGMMMLPPVIISLPFKLLLFVLVDGWNLLVGSLV 240


                 ....
gi 697053297 241 QSFY 244
Cdd:PRK05699 241 QSFG 244
FliP pfam00813
FliP family;
48-239 1.20e-109

FliP family;


Pssm-ID: 425882  Cd Length: 191  Bit Score: 313.58  E-value: 1.20e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697053297   48 ITSLTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYTDAYQPFSEDKISMQEAL 127
Cdd:pfam00813   1 LTVLSLAPAILIMMTSFTRIVIVLSFLRNALGTQQTPPNQVLIGLALFLTFFIMAPVFQQIYEDALQPYLAGEITQEEAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697053297  128 DKGAQPLREFMLRQTREADLALFARLSNTGEmQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMAL 207
Cdd:pfam00813  81 ERASEPLREFMLKQTREKDLALFLDLAGQWP-ETAEDVPLTVLIPAFVISELKTAFQIGFLIYLPFLVIDLVVASVLMSM 159

                         170       180       190
                  ....*....|....*....|....*....|..
gi 697053297  208 GMMMVPPATIALPFKIMLFVLVDGWQLLVSSL 239
Cdd:pfam00813 160 GMMMLPPVTISLPFKLLLFVLVDGWTLLVGSL 191
fliP TIGR01103
flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis ...
 47-243 4.00e-103

flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis protein fliP, which is one of the genes in motility locus on the bacterial chromosome that is involved in structure and function of bacterial flagellum. It was demonstrated that mutants in fliP locus were non-flagellated and non-motile, while revertants were flagellated and motile. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 211625  Cd Length: 197  Bit Score: 297.37  E-value: 4.00e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697053297   47 FITSLTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYTDAYQPFSEDKISMQEA 126
Cdd:TIGR01103   1 LLTVLSLAPAILIMMTSFTRIVIVLSILRSALGLQSTPPNQVLLGLALFLTFFVMAPTFDRIYDDAYQPLLDNQISEQEA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697053297  127 LDKGAQPLREFMLRQTREADLALFARLSNTGEMQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMA 206
Cdd:TIGR01103  81 YQKAEEPLREFMLRQTRDKDLALFMRLAKIPKPQTPEAVPLRVLVPAFMLSELKTAFQIGFLIFIPFLIIDLVVASVLMA 160

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 697053297  207 LGMMMVPPATIALPFKIMLFVLVDGWQLLVSSLAQSF 243
Cdd:TIGR01103 161 MGMMMLPPVMISLPFKLMLFVLVDGWNLLVGSLVQSF 197
 
Name Accession Description Interval E-value
FliP COG1338
Flagellar biosynthesis protein FliP [Cell motility];
2-244 9.37e-136

Flagellar biosynthesis protein FliP [Cell motility];


Pssm-ID: 440949  Cd Length: 249  Bit Score: 381.77  E-value: 9.37e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697053297   2 RRLLSLTLAGVGLFAPAVYAQ--LPGL-VSTPLAGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIIIVFGLLRNAL 78
Cdd:COG1338    4 RLLALLLLLALLLLPAPALAQpgLPSLsLTLGGAGGGQTYSLSLQILLLLTVLSLAPAILLMMTSFTRIIIVLSFLRQAL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697053297  79 GTPSAPPNQVLLGLALFLTFFIMSPVIDKIYTDAYQPFSEDKISMQEALDKGAQPLREFMLRQTREADLALFARLSNTGE 158
Cdd:COG1338   84 GTQQTPPNQVLIGLALFLTFFVMAPVFDQIYDDALQPYLAGEITQEEALERASEPLREFMLKQTREKDLALFADLAGEPP 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697053297 159 MQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKIMLFVLVDGWQLLVSS 238
Cdd:COG1338  164 PETPEDVPLRVLIPAFVISELKTAFQIGFLIFLPFLVIDLVVASVLMSMGMMMLPPVMISLPFKLLLFVLVDGWNLLVGS 243


                 ....*.
gi 697053297 239 LAQSFY 244
Cdd:COG1338  244 LVRSFG 249
fliP PRK05699
flagellar biosynthesis protein FliP; Reviewed
 1-244 1.01e-129

flagellar biosynthesis protein FliP; Reviewed


Pssm-ID: 235566  Cd Length: 245  Bit Score: 366.44  E-value: 1.01e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697053297   1 MRRLLSLTLAGVGLFAPAVYAQLPGLVSTPLAGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIIIVFGLLRNALGT 80
Cdd:PRK05699   2 MRRLLALALLLLALASAAAAAPLPGLNLLPGANGGQEYSLSLQLLLLLTVLSLAPAILLMMTSFTRIIIVLSLLRQALGT 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697053297  81 PSAPPNQVLLGLALFLTFFIMSPVIDKIYTDAYQPFSEDKISMQEALDKGAQPLREFMLRQTREADLALFARLSNTgEMQ 160
Cdd:PRK05699  82 QQTPPNQVLIGLALFLTFFIMSPVFDKIYDDAIQPYLDEKITLEEALERAAAPLREFMLKQTREKDLALFAKLAGE-PPK 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697053297 161 GPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKIMLFVLVDGWQLLVSSLA 240
Cdd:PRK05699 161 TPEDVPLSVLVPAFVLSELKTAFQIGFLIFLPFLIIDLVVASVLMSMGMMMLPPVIISLPFKLLLFVLVDGWNLLVGSLV 240


                 ....
gi 697053297 241 QSFY 244
Cdd:PRK05699 241 QSFG 244
PRK12430 PRK12430
putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional
 14-244 2.15e-123

putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional


Pssm-ID: 237101 [Multi-domain]  Cd Length: 379  Bit Score: 355.35  E-value: 2.15e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697053297  14 LFAPAVYAQLPGLVSTPLAGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLA 93
Cdd:PRK12430 148 LFCPSAYADIPGLTSHILDDGSQTWSVPVQTLVFLTSLTFLPAFLLMMTSFTRIVIVFGLLRNALGTPYAPPNQILLGLA 227

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697053297  94 LFLTFFIMSPVIDKIYTDAYQPFSEDKISMQEALDKGAQPLREFMLRQTREADLALFARLSNTGEMQGPEAVPMRILLPA 173
Cdd:PRK12430 228 LFLTFFIMSPTFDKIYKDAYLPFSQEKINMDDAILKGAMPLKKFMLNQTRTPDLELFSKLAHISSYKNKNEIPMRILLPS 307

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 697053297 174 YVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKIMLFVLVDGWQLLVSSLAQSFY 244
Cdd:PRK12430 308 FITSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPSTISLPFKLMLFVLVDGWQLLITSLAHSFN 378
FliP pfam00813
FliP family;
48-239 1.20e-109

FliP family;


Pssm-ID: 425882  Cd Length: 191  Bit Score: 313.58  E-value: 1.20e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697053297   48 ITSLTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYTDAYQPFSEDKISMQEAL 127
Cdd:pfam00813   1 LTVLSLAPAILIMMTSFTRIVIVLSFLRNALGTQQTPPNQVLIGLALFLTFFIMAPVFQQIYEDALQPYLAGEITQEEAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697053297  128 DKGAQPLREFMLRQTREADLALFARLSNTGEmQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMAL 207
Cdd:pfam00813  81 ERASEPLREFMLKQTREKDLALFLDLAGQWP-ETAEDVPLTVLIPAFVISELKTAFQIGFLIYLPFLVIDLVVASVLMSM 159

                         170       180       190
                  ....*....|....*....|....*....|..
gi 697053297  208 GMMMVPPATIALPFKIMLFVLVDGWQLLVSSL 239
Cdd:pfam00813 160 GMMMLPPVTISLPFKLLLFVLVDGWTLLVGSL 191
fliP TIGR01103
flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis ...
 47-243 4.00e-103

flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis protein fliP, which is one of the genes in motility locus on the bacterial chromosome that is involved in structure and function of bacterial flagellum. It was demonstrated that mutants in fliP locus were non-flagellated and non-motile, while revertants were flagellated and motile. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 211625  Cd Length: 197  Bit Score: 297.37  E-value: 4.00e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697053297   47 FITSLTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYTDAYQPFSEDKISMQEA 126
Cdd:TIGR01103   1 LLTVLSLAPAILIMMTSFTRIVIVLSILRSALGLQSTPPNQVLLGLALFLTFFVMAPTFDRIYDDAYQPLLDNQISEQEA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697053297  127 LDKGAQPLREFMLRQTREADLALFARLSNTGEMQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMA 206
Cdd:TIGR01103  81 YQKAEEPLREFMLRQTRDKDLALFMRLAKIPKPQTPEAVPLRVLVPAFMLSELKTAFQIGFLIFIPFLIIDLVVASVLMA 160

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 697053297  207 LGMMMVPPATIALPFKIMLFVLVDGWQLLVSSLAQSF 243
Cdd:TIGR01103 161 MGMMMLPPVMISLPFKLMLFVLVDGWNLLVGSLVQSF 197
EscR COG4790
Type III secretory pathway, EscR/YscR component [Intracellular trafficking, secretion, and ...
 41-243 1.75e-72

Type III secretory pathway, EscR/YscR component [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443819  Cd Length: 216  Bit Score: 220.05  E-value: 1.75e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697053297  41 PVQTLVFITSLTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYtDAYQPFSEDK 120
Cdd:COG4790    7 PLSLILLLALLSLLPFLVVMGTSFLKISVVLSLLRNALGVQQVPPNMVLNGIALILTLFVMAPVGQEIY-DRLQAAPVDF 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697053297 121 ISMQ---EALDKGAQPLREFMLRQTREADLALFarLSNTGEMQGPEAVP------MRILLPAYVTSELKTAFQIGFTIFI 191
Cdd:COG4790   86 SSSAsvlEAVDAGLEPLRDFLKKNTDPEERAFF--LDAAQRLWPEEYAAklkpddLLVLLPAFVLSELTSAFKIGFLLYL 163

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 697053297 192 PFLIIDLVIASVLMALGMMMVPPATIALPFKIMLFVLVDGWQLLVSSLAQSF 243
Cdd:COG4790  164 PFVVIDLVVSNILLALGMMMVSPMTISLPFKLLLFVLVDGWTLLLHGLVLSY 215
PRK12797 PRK12797
type III secretion system protein YscR; Provisional
 41-239 3.06e-63

type III secretion system protein YscR; Provisional


Pssm-ID: 237210  Cd Length: 213  Bit Score: 196.63  E-value: 3.06e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697053297  41 PVQTLVFITSLTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYTDAYQPF--SE 118
Cdd:PRK12797   7 PLQLIILLALLSLLPLIAVMGTSFLKISVVLSLLRNALGVQQVPPNMALYGLALILTLFVMAPVGLAIQDRLQQPPlsLQ 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697053297 119 DKISMQEALDKGAQPLREFMLRQTREADLALFarLSNTGEMQGPEAVP------MRILLPAYVTSELKTAFQIGFTIFIP 192
Cdd:PRK12797  87 DPDSVLQLLDAALAPLRDFLKKHTDERERTFF--VRSAQRIWPEEAADslkkddLLILIPAFTLSELTRAFEIGFLLYLP 164

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 697053297 193 FLIIDLVIASVLMALGMMMVPPATIALPFKIMLFVLVDGWQLLVSSL 239
Cdd:PRK12797 165 FIVIDLIISNILLAMGMMMVSPTTISLPFKLLLFVLVDGWSRLLHGL 211
fliP PRK12783
flagellar biosynthesis protein FliP; Reviewed
 1-244 1.03e-59

flagellar biosynthesis protein FliP; Reviewed


Pssm-ID: 171720  Cd Length: 255  Bit Score: 188.93  E-value: 1.03e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697053297   1 MRRLLSLTLAGV--GLFAPAVYAQ-------LPGLVSTPLAGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIIIVF 71
Cdd:PRK12783   1 MKRARAILVLALaaGLTASAALAQgaggvtgVPGLDALLPPGNGAASGRIIQLVALLTVLSLAPGLLVMVTSFTRFAVAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697053297  72 GLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYTDAYQPFSEDKISMQEALDKGAQPLREFMLRQTREADLALFA 151
Cdd:PRK12783  81 SFLRSGLGLQSTPANLFLVSLALFMTFYVMAPTFDRAWNEGVKPLQENRISEEEAFGKIVDPFREFMTQHVRPKDLQTFT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697053297 152 RLSNTGEMQGP--EAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKIMLFVLV 229
Cdd:PRK12783 161 DLASRSFPKAEagEKIDLRILIPAFMISELRRGFEIGFLIVLPFLVIDMIVATIVMSMGMMMLPPTVISLPFKVLFFVLI 240

                        250
                 ....*....|....*
gi 697053297 230 DGWQLLVSSLAQSFY 244
Cdd:PRK12783 241 DGWNLLVSGLVRSFF 255
yscR TIGR01102
type III secretion apparatus protein, YscR/HrcR family; This model identifies the generic ...
 45-239 5.16e-56

type III secretion apparatus protein, YscR/HrcR family; This model identifies the generic virulence translocation proteins in bacteria. It derives its name:'Yop' from Yersinia enterocolitica species, where this virulence protein was identified. In bacterial pathogenesis, Yop effector proteins are translocated into the eukaryotic cells. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 130172  Cd Length: 202  Bit Score: 177.92  E-value: 5.16e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697053297   45 LVFITSLTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYTDAYQPFSE--DKIS 122
Cdd:TIGR01102   2 IAVLAALSLLPFIIVVGTSFLKISVVLGILRNALGVQQVPPNMALYGIALILSMFVMAPVGHQAQDRFHQEPVAysNIDF 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697053297  123 MQEALDKGAQPLREFMLRQTREADLALFarLSNTGEMQGPE------AVPMRILLPAYVTSELKTAFQIGFTIFIPFLII 196
Cdd:TIGR01102  82 LQKSLDAGLAPYREFLKKNTDEDEVAFF--ERSTQKMWPKEmadrlkKDSLLILLPAFTLSELTAAFKIGFLLYLPFIVI 159

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 697053297  197 DLVIASVLMALGMMMVPPATIALPFKIMLFVLVDGWQLLVSSL 239
Cdd:TIGR01102 160 DLIVSNILLALGMMMVSPMTISLPFKLLLFVLIDGWSRLLHGL 202
PRK09617 PRK09617
type III secretion system protein; Reviewed
 46-243 4.01e-52

type III secretion system protein; Reviewed


Pssm-ID: 236593  Cd Length: 243  Bit Score: 169.15  E-value: 4.01e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697053297  46 VFITSLTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYTDAYQPF--------- 116
Cdd:PRK09617  30 VILIFLALSPFLVMLLTSFLKIIIVLSLLRNALGVQQTPPSQVLNGIALILSIYIMFPTGVAMYNDAQKGIesnavprsl 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697053297 117 --SEDKISMQEALDKGAQPLREFMLRQTREADLALFARLSNTG----EMQGPEAVPMRILLPAYVTSELKTAFQIGFTIF 190
Cdd:PRK09617 110 fsAEGAETVFVAANKSKEPLRSFLIKNTPKPQIASFYKISQKTfppeIRDALTPSDFMIIIPAFIMGQLKNAFEIGVLIY 189

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 697053297 191 IPFLIIDLVIASVLMALGMMMVPPATIALPFKIMLFVLVDGWQLLVSSLAQSF 243
Cdd:PRK09617 190 LPFFVIDLVTANVLLAMGMMMLSPLSISLPLKLLLVVMVDGWTLLLEGLMISF 242
spaP PRK12796
EscR/YscR/HrcR family type III secretion system export apparatus protein;
52-235 5.39e-39

EscR/YscR/HrcR family type III secretion system export apparatus protein;


Pssm-ID: 237209  Cd Length: 221  Bit Score: 134.72  E-value: 5.39e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697053297  52 TFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYtDAYQ--PFSEDKI-SMQEALD 128
Cdd:PRK12796  15 TLLPFIIASGTCFIKFSIVFVMVRNALGLQQVPSNMTLNGIALLLSMFVMMPVIQDIY-VYFQnePVDFNNIaSVVKFVD 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697053297 129 KGAQPLREFMLRQTrEADLALF---ARLSNTGEMQGPEA------VPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLV 199
Cdd:PRK12796  94 EGLGGYRDYLIKYS-DPELVRFferAQKKRSYGDEAEANdhdkdeISLFSLLPAYALSEIKSAFKIGFYLYLPFVVVDLV 172

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 697053297 200 IASVLMALGMMMVPPATIALPFKIMLFVLVDGWQLL 235
Cdd:PRK12796 173 VSSVLLALGMMMMSPVTISVPIKLILFVAMDGWTLL 208
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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