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Conserved domains on  [gi|1707166505|ref|WP_143070055|]
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cytochrome c [Polynucleobacter asymbioticus]

Protein Classification

c-type cytochrome( domain architecture ID 10006741)

c-type cytochrome is an electron carrier protein that contains one or more heme groups; similar to Helicobacter pylori cytochrome c-553 that binds 1 heme and functions as the natural electron acceptor for a formate dehydrogenase

CATH:  1.10.760.10
Gene Ontology:  GO:0020037|GO:0009055|GO:0046872
PubMed:  31252007|22723177|18568041|12594933|10647174|10395550
SCOP:  3000815

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
5-106 8.87e-21

Cytochrome c553 [Energy production and conversion];


:

Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 79.39  E-value: 8.87e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707166505   5 VALMGFSAQAdevkGSAAAGNGKVWLCTGCHSIPDYRADYPYVyrvPMLGGQNAGYIATALSEYKKGERKHPTMRSIATS 84
Cdd:COG2863     3 LALLAAPAAA----GDAARGKAYAAACAACHGADGEGNPGGGA---PRLAGQHAEYLVAQLKAFRSGARKNGVMPAIAKG 75

                          90       100
                  ....*....|....*....|..
gi 1707166505  85 LSDQDMADIGEYYAAQTASSPN 106
Cdd:COG2863    76 LSDEDIKALAAYIASLKAPPGA 97
 
Name Accession Description Interval E-value
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
5-106 8.87e-21

Cytochrome c553 [Energy production and conversion];


Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 79.39  E-value: 8.87e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707166505   5 VALMGFSAQAdevkGSAAAGNGKVWLCTGCHSIPDYRADYPYVyrvPMLGGQNAGYIATALSEYKKGERKHPTMRSIATS 84
Cdd:COG2863     3 LALLAAPAAA----GDAARGKAYAAACAACHGADGEGNPGGGA---PRLAGQHAEYLVAQLKAFRSGARKNGVMPAIAKG 75

                          90       100
                  ....*....|....*....|..
gi 1707166505  85 LSDQDMADIGEYYAAQTASSPN 106
Cdd:COG2863    76 LSDEDIKALAAYIASLKAPPGA 97
 
Name Accession Description Interval E-value
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
5-106 8.87e-21

Cytochrome c553 [Energy production and conversion];


Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 79.39  E-value: 8.87e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707166505   5 VALMGFSAQAdevkGSAAAGNGKVWLCTGCHSIPDYRADYPYVyrvPMLGGQNAGYIATALSEYKKGERKHPTMRSIATS 84
Cdd:COG2863     3 LALLAAPAAA----GDAARGKAYAAACAACHGADGEGNPGGGA---PRLAGQHAEYLVAQLKAFRSGARKNGVMPAIAKG 75

                          90       100
                  ....*....|....*....|..
gi 1707166505  85 LSDQDMADIGEYYAAQTASSPN 106
Cdd:COG2863    76 LSDEDIKALAAYIASLKAPPGA 97
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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