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Conserved domains on  [gi|124805527|ref|XP_001350465|]
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tetratricopeptide repeat protein, putative [Plasmodium falciparum 3D7]

Protein Classification

SHNi-TPR and TPR_12 domain-containing protein( domain architecture ID 11662683)

SHNi-TPR and TPR_12 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SHNi-TPR super family cl11153
SHNi-TPR; SHNi-TPR family members contain a reiterated sequence motif that is an interrupted ...
 160-196 1.38e-06

SHNi-TPR; SHNi-TPR family members contain a reiterated sequence motif that is an interrupted form of TPR repeat.


The actual alignment was detected with superfamily member pfam10516:

Pssm-ID: 402238 [Multi-domain]  Cd Length: 38  Bit Score: 44.36  E-value: 1.38e-06
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 124805527  160 YVFIRLGDINLLNHFFFEALKEYEKCVDLREKYKVGD 196
Cdd:pfam10516   2 DVYDLLGEISLENENFPQAVTDLRKALELREELLPPE 38
TPR_12 pfam13424
Tetratricopeptide repeat;
164-232 6.66e-03

Tetratricopeptide repeat;


:

Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 35.06  E-value: 6.66e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805527  164 RLGDINLLNHFFFEALKEYEKCVDLREKYKVGD-ENLIAPLISLSQSYMFCGKRKEAVEYFEKVKKILLD 232
Cdd:pfam13424   8 NLAAVLRRLGRYDEALELLEKALEIARRLLGPDhPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
 
Name Accession Description Interval E-value
SHNi-TPR pfam10516
SHNi-TPR; SHNi-TPR family members contain a reiterated sequence motif that is an interrupted ...
 160-196 1.38e-06

SHNi-TPR; SHNi-TPR family members contain a reiterated sequence motif that is an interrupted form of TPR repeat.


Pssm-ID: 402238 [Multi-domain]  Cd Length: 38  Bit Score: 44.36  E-value: 1.38e-06
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 124805527  160 YVFIRLGDINLLNHFFFEALKEYEKCVDLREKYKVGD 196
Cdd:pfam10516   2 DVYDLLGEISLENENFPQAVTDLRKALELREELLPPE 38
TPR_12 pfam13424
Tetratricopeptide repeat;
164-232 6.66e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 35.06  E-value: 6.66e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805527  164 RLGDINLLNHFFFEALKEYEKCVDLREKYKVGD-ENLIAPLISLSQSYMFCGKRKEAVEYFEKVKKILLD 232
Cdd:pfam13424   8 NLAAVLRRLGRYDEALELLEKALEIARRLLGPDhPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
 
Name Accession Description Interval E-value
SHNi-TPR pfam10516
SHNi-TPR; SHNi-TPR family members contain a reiterated sequence motif that is an interrupted ...
 160-196 1.38e-06

SHNi-TPR; SHNi-TPR family members contain a reiterated sequence motif that is an interrupted form of TPR repeat.


Pssm-ID: 402238 [Multi-domain]  Cd Length: 38  Bit Score: 44.36  E-value: 1.38e-06
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 124805527  160 YVFIRLGDINLLNHFFFEALKEYEKCVDLREKYKVGD 196
Cdd:pfam10516   2 DVYDLLGEISLENENFPQAVTDLRKALELREELLPPE 38
TPR_12 pfam13424
Tetratricopeptide repeat;
164-232 6.66e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 35.06  E-value: 6.66e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805527  164 RLGDINLLNHFFFEALKEYEKCVDLREKYKVGD-ENLIAPLISLSQSYMFCGKRKEAVEYFEKVKKILLD 232
Cdd:pfam13424   8 NLAAVLRRLGRYDEALELLEKALEIARRLLGPDhPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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