|
Name |
Accession |
Description |
Interval |
E-value |
| PLN02286 |
PLN02286 |
arginine-tRNA ligase |
9-590 |
0e+00 |
|
arginine-tRNA ligase
Pssm-ID: 215160 [Multi-domain] Cd Length: 576 Bit Score: 613.57 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 9 KKIKTIFQNSIQKCFPSIS--EDAIVTYANLKFGHYQCNNAINIYKKY-GKELNYENAQKISEFIISNINET-IFEEIKS 84
Cdd:PLN02286 1 RELAKLFEASLRLTVPDEPsvEPLVAACTNPKFGDYQCNNAMGLWSKLkGKGTSFKNPRAVAQAIVKNLPASeMIESTSV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 85 SPQGFITVKLSKDYIETSLKKLF-NGEKIDISININDikesnenygNVLVDFSSPNIAKEMHVGHLRSTIIGDSICRVFE 163
Cdd:PLN02286 81 AGPGFVNVRLSASWLAKRIERMLvDGIDTWAPTLPVK---------RAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLE 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 164 FLKINTHRVNHVGDWGTQFGMIINYIKTHYPNFKEEMP-DLSNLTSLYQESKKMYDADKEFEKSSKENAIKLQNNDEDCK 242
Cdd:PLN02286 152 FSGVEVLRRNHVGDWGTQFGMLIEHLFEKFPNWESVSDqAIGDLQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYR 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 243 FVWNKLCESSKKEFDKLYNILDIKLEYVGESFYVPMLSTVLDLLKESKLLTNIGDAICYQSENFKVPLFLQKSNGGYGYD 322
Cdd:PLN02286 232 AAWAKICEISRREFEKVYQRLRVELEEKGESFYNPYIPGVIEELESKGLVVESDGARVIFVEGFDIPLIVVKSDGGFNYA 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 323 STDVAALYYRLTQLNCNCVIYVTDIGQLTHFETIFDLIKKTNWGDKNA--KLMHVGFGFVLNEDNKKFKTRSGTTVKLIN 400
Cdd:PLN02286 312 STDLAALWYRLNEEKAEWIIYVTDVGQQQHFDMVFKAAKRAGWLPEDTypRLEHVGFGLVLGEDGKRFRTRSGEVVRLVD 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 401 LIKEGTERAKRDLLQRIETKSEEEKsyfenvDIDQLSESLCVSAIKYFDLKQHRNSDYKFSYDNMLNVKGNTGIYIIYGY 480
Cdd:PLN02286 392 LLDEAKSRSKAALIERGKDSEWTPE------ELEQAAEAVGYGAVKYADLKNNRLTNYTFSFDQMLDLKGNTAVYLLYAH 465
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 481 SRICSIFRKSTINVEDISKD-ELSLTSIYEINLGLHILKFPDIFYYILKNMLVHKLAEYMYDLTTTFTAFYENCKVLNNE 559
Cdd:PLN02286 466 ARICSIIRKSGKDIDELKKTgKIVLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLSEKFTKFYSNCKVNGSE 545
|
570 580 590
....*....|....*....|....*....|.
gi 124805963 560 NEKSRLLLCSITKSLLKLCMELLGMKPIEKL 590
Cdd:PLN02286 546 EETSRLLLCEATAIVMRKCFHLLGITPLYRL 576
|
|
| ArgS |
COG0018 |
Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Arginyl-tRNA ... |
7-589 |
8.61e-147 |
|
Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Arginyl-tRNA synthetase is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases
Pssm-ID: 439789 [Multi-domain] Cd Length: 574 Bit Score: 435.73 E-value: 8.61e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 7 ITKKIKTIFQNSIQKCFPSISE-DAIVTYA-NLKFGHYQCNNAINIYKKYGKelnyeNAQKISEFIISNINET-IFEEIK 83
Cdd:COG0018 3 IKEELAEAIAAALAALGAGLEEpDILVERPkDPEHGDYATNVAMQLAKPLKK-----NPREIAEEIAEALDADpLVEKVE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 84 SSPQGFITVKLSKDYIETSLKKLFngekidisinindikESNENYG--------NVLVDFSSPNIAKEMHVGHLRSTIIG 155
Cdd:COG0018 78 IAGPGFINFFLSPAALAAVLKEIL---------------ADGEDYGrsdagkgkKVVVEYVSANPTKPLHVGHLRGAVIG 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 156 DSICRVFEFLKINTHRVNHVGDWGTQFGMIINYIKtHYPN--FKEEMPDLSNLTSLYQESKKMYDADKEFEKSSKENAIK 233
Cdd:COG0018 143 DALARILEAAGYDVTRENYINDAGTQIGKLALSLE-RYGEeeIEPESKPDGYLGDLYVKFHKEYEEDPELEDIARELLAK 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 234 LQNNDEDCKFVWNKLCESSKKEFDKLYNILDIKLE-YVGESFYVPM--LSTVLDLLKESKLLTNIGDAICYQSENFK--V 308
Cdd:COG0018 222 LEPGDEEALELWKKAVDWSLEEIKEDLKRLGVEFDvWFSESSLYDSgaVEEVVEELKEKGLLYESDGALWVRLTEFGddK 301
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 309 PLFLQKSNGGYGYDSTDVAALYYRLTQLNCNCVIYVTDIGQLTHFETIFDLIKKTNWgDKNAKLMHVGFGFVLNEDNKKF 388
Cdd:COG0018 302 DRVLVKSDGTYTYFTTDIAYHLYKFERYGFDRVIYVVGADQHGHFKRLFAALKALGY-DPAKDLEHLLFGMVNLRDGEKM 380
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 389 KTRSGTTVKLINLIKEGTERAKrdllQRIETKSEEEKsyfenvdiDQLSESLCVSAIKYFDLKQHRNSDYKFSYDNMLNV 468
Cdd:COG0018 381 STRAGTVVTLDDLLDEAVERAR----EIIEEKSEEEK--------EEIAEQVGIDAVRYFDLSRSRDKDLDFDLDLALSF 448
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 469 KGNTGIYIIYGYSRICSIFRKSTINVEDISKDELS-LTSIYEINLGLHILKFPDIFYYILKNMLVHKLAEYMYDLTTTFT 547
Cdd:COG0018 449 EGNTNPYVQYAHARICSILRKAGEELDGLAEADLSlLTEEEELALIKKLAQFPEVVEEAAEDLEPHRIANYLYELAKAFH 528
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 124805963 548 AFYENCKVLNNENE---KSRLLLCSITKSLLKLCMELLGMKPIEK 589
Cdd:COG0018 529 SFYNACRILKAEDEelrAARLALVAATAQVLKNGLGLLGISAPER 573
|
|
| argS |
TIGR00456 |
arginyl-tRNA synthetase; This model recognizes arginyl-tRNA synthetase in every completed ... |
7-590 |
4.05e-114 |
|
arginyl-tRNA synthetase; This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori. [Protein synthesis, tRNA aminoacylation]
Pssm-ID: 273085 [Multi-domain] Cd Length: 563 Bit Score: 351.26 E-value: 4.05e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 7 ITKKIKTIFQNSIQKCFPS-ISEDAIVTYANLKFGHYQCNNAINIYKKYGKelnyeNAQKISEFIISNINETIFEEIKSS 85
Cdd:TIGR00456 1 IKTLLKEEISQALLKAGLSkESEILVEETPNPEFGDYASNIAFPLAKVLKK-----APRQIAEEIVLKLKTGEIIEKVEA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 86 PQGFITVKLSKDYIETSLKKLFNGEKIDISININDIKEsnenygnVLVDFSSPNIAKEMHVGHLRSTIIGDSICRVFEFL 165
Cdd:TIGR00456 76 AGPFINFFLSPQKLLERLIQKILTQKEKYGSKKLKNKK-------IIIEFSSANPAGPLHVGHLRNAIIGDSLARILEFL 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 166 KINTHRVNHVGDWGTQFGMIINYIKTHYP---NFKEEMPDlSNLTSLYQESKKMYDADKEFEKSSKENAIKLQNNDEDCK 242
Cdd:TIGR00456 149 GYDVIREYYVNDWGRQFGLLALGVEKFGNealNIAVKKPD-HGLEGFYVEINKRLEENEELEEEARELFVKLESGDEETI 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 243 FVWNKLCESSKKEFDKLYNILDIKLE---YVGESFYVPMLSTVLDLLKESKLLTNIGdAICYQSENF--KVPLFLQKSNG 317
Cdd:TIGR00456 228 KLWKRLVEYSLEGIKETYDRLNIHFDsfvWEGESVKNGMLPKVLEDLKEKGLVVEDG-ALWLDLTLFgdKKDRVLQKSDG 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 318 GYGYDSTDVAALYYRLTQlNCNCVIYVTDIGQLTHFETIFDLIKKTnwGDKNAKLMHVGFGFVLNednKKFKTRSGTTVK 397
Cdd:TIGR00456 307 TYLYLTTDIAYHLDKLER-GFDKMIYVWGSDHHLHIAQMFAILEKL--GYKKKELEHLNFGMVPL---YSMKTRRGNVIS 380
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 398 LINLIKEGTERAKRDLLQRIETKSEEeksyfenvdidqLSESLCVSAIKYFDLKQHRNSDYKFSYDNMLNVKGNTGIYII 477
Cdd:TIGR00456 381 LDNLLDEASKRAGNVITIKNDLEEEK------------VADAVGIGAVRYFDLSKNRTTDYVFDWDAMLSFEGNTAPYIQ 448
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 478 YGYSRICSIFRKSTINVEDISKDELSLTSIYEINLGLHILKFPDIFYYILKNMLVHKLAEYMYDLTTTFTAFYENCKVLN 557
Cdd:TIGR00456 449 YAHARICSILRKAEIDGEKLIADDFELLEEKEKELLKLLLQFPEVLEEAAEELEPHVLTNYLYELASLFSSFYKACPVLD 528
|
570 580 590
....*....|....*....|....*....|....*
gi 124805963 558 NENE--KSRLLLCSITKSLLKLCMELLGMKPIEKL 590
Cdd:TIGR00456 529 AENElaAARLALLKATRQTLKNGLDLLGIEPPERM 563
|
|
| tRNA-synt_1d |
pfam00750 |
tRNA synthetases class I (R); Other tRNA synthetase sub-families are too dissimilar to be ... |
131-462 |
5.14e-98 |
|
tRNA synthetases class I (R); Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only arginyl tRNA synthetase.
Pssm-ID: 395607 [Multi-domain] Cd Length: 348 Bit Score: 302.57 E-value: 5.14e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 131 VLVDFSSPNIAKEMHVGHLRSTIIGDSICRVFEFLKINTHRVNHVGDWGTQFGMIINYIKTHYPNFKEEMPDLSNLTSLY 210
Cdd:pfam00750 21 VVVDFSSPNIAKEMHVGHLRSTIIGDALSRLLEFLGHSVIRANHVGDWGTQFGMLIAGLEKYQDEKTLQEMPIQDLEDFY 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 211 QESKKMYDADKEFEKSSKENAIKLQNNDEDCKFVWNKLCESSKKEFDKLYNILDIKLEYVGESFYVPMLSTVLDLLKESK 290
Cdd:pfam00750 101 REAKKHYDEEEEFAERARNYVVKLQSGDEYWRRMWKLIVDITMTQNQRLYDRLDVTLTEMGESLYNPMMNEIVKDFKKNG 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 291 LLTNI-GDAICYQSENFK-VPLFLQKSNGGYGYDSTDVAALYYRLTQLNCNCVIYVTDIGQLTHFETIFDLIKKTNWGDK 368
Cdd:pfam00750 181 LVVEIdGALVVFLDEFGKpMGVIVQKSDGGYLYTTTDIAAAKYRYETLHADRMLYVIDSRQSQHMQQAFAILRKAGYVPE 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 369 NAKLMHVGFGFVLNEDNKKFKTRSGTTVKLINLIKEGTERAkrdlLQRIETKSEEEKSYFENvdIDQLSESLCVSAIKYF 448
Cdd:pfam00750 261 SKDLEHINFGMVLGKDGKPFKTRKGGTVKLADLLDEALERA----LQLIMEKNKDKILQADE--LEAVADAVGIGAIKYA 334
|
330
....*....|....
gi 124805963 449 DLKQHRNSDYKFSY 462
Cdd:pfam00750 335 DLSKNRTNDYIFDW 348
|
|
| ArgRS_core |
cd00671 |
catalytic core domain of arginyl-tRNA synthetases; Arginyl tRNA synthetase (ArgRS) catalytic ... |
130-393 |
5.90e-59 |
|
catalytic core domain of arginyl-tRNA synthetases; Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Pssm-ID: 185675 [Multi-domain] Cd Length: 212 Bit Score: 195.86 E-value: 5.90e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 130 NVLVDFSSPNIAKEMHVGHLRSTIIGDSICRVFEFLKINTHRVNHVGDWGTQFGMIINYIKthypnfkeempdlsnltsl 209
Cdd:cd00671 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLE------------------- 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 210 yqeskkmydadkefeksskenaiklqnndedckfVWNKLCESSKKEFDKLYNILDIKL-EYVGESFYVPMLSTVLDLLKE 288
Cdd:cd00671 62 ----------------------------------KWRKLVEESIKADLETYGRLDVRFdVWFGESSYLGLMGKVVELLEE 107
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 289 SKLLTNIGDAICYQSENFK--VPLFLQKSNGGYGYDSTDVAALYYRLtQLNCNCVIYVTDIGQLTHFETIFDLIKKTNWG 366
Cdd:cd00671 108 LGLLYEEDGALWLDLTEFGddKDRVLVRSDGTYTYFTRDIAYHLDKF-ERGADKIIYVVGADHHGHFKRLFAALELLGYD 186
|
250 260
....*....|....*....|....*..
gi 124805963 367 DKNaKLMHVGFGFVLNEDNKKFKTRSG 393
Cdd:cd00671 187 EAK-KLEHLLYGMVNLPKEGKMSTRAG 212
|
|
| DALR_1 |
smart00836 |
DALR anticodon binding domain; This all alpha helical domain is the anticodon binding domain ... |
478-590 |
1.12e-28 |
|
DALR anticodon binding domain; This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids.
Pssm-ID: 214846 [Multi-domain] Cd Length: 122 Bit Score: 110.36 E-value: 1.12e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 478 YGYSRICSIFRKS---TINVEDISKDELS-LTSIYEINLGLHILKFPDIFYYILKNMLVHKLAEYMYDLTTTFTAFYENC 553
Cdd:smart00836 3 YAHARICSILRKAgeaGETLPDIADADLSlLTEPEEWALLLKLARFPEVLEAAAEQLEPHRLANYLYDLAAAFHSFYNRV 82
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 124805963 554 KVLNNENE---KSRLLLCSITKSLLKLCMELLGMKPIEKL 590
Cdd:smart00836 83 RVLGEENPelrKARLALLKAVRQVLANGLRLLGISAPERM 122
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PLN02286 |
PLN02286 |
arginine-tRNA ligase |
9-590 |
0e+00 |
|
arginine-tRNA ligase
Pssm-ID: 215160 [Multi-domain] Cd Length: 576 Bit Score: 613.57 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 9 KKIKTIFQNSIQKCFPSIS--EDAIVTYANLKFGHYQCNNAINIYKKY-GKELNYENAQKISEFIISNINET-IFEEIKS 84
Cdd:PLN02286 1 RELAKLFEASLRLTVPDEPsvEPLVAACTNPKFGDYQCNNAMGLWSKLkGKGTSFKNPRAVAQAIVKNLPASeMIESTSV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 85 SPQGFITVKLSKDYIETSLKKLF-NGEKIDISININDikesnenygNVLVDFSSPNIAKEMHVGHLRSTIIGDSICRVFE 163
Cdd:PLN02286 81 AGPGFVNVRLSASWLAKRIERMLvDGIDTWAPTLPVK---------RAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLE 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 164 FLKINTHRVNHVGDWGTQFGMIINYIKTHYPNFKEEMP-DLSNLTSLYQESKKMYDADKEFEKSSKENAIKLQNNDEDCK 242
Cdd:PLN02286 152 FSGVEVLRRNHVGDWGTQFGMLIEHLFEKFPNWESVSDqAIGDLQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYR 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 243 FVWNKLCESSKKEFDKLYNILDIKLEYVGESFYVPMLSTVLDLLKESKLLTNIGDAICYQSENFKVPLFLQKSNGGYGYD 322
Cdd:PLN02286 232 AAWAKICEISRREFEKVYQRLRVELEEKGESFYNPYIPGVIEELESKGLVVESDGARVIFVEGFDIPLIVVKSDGGFNYA 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 323 STDVAALYYRLTQLNCNCVIYVTDIGQLTHFETIFDLIKKTNWGDKNA--KLMHVGFGFVLNEDNKKFKTRSGTTVKLIN 400
Cdd:PLN02286 312 STDLAALWYRLNEEKAEWIIYVTDVGQQQHFDMVFKAAKRAGWLPEDTypRLEHVGFGLVLGEDGKRFRTRSGEVVRLVD 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 401 LIKEGTERAKRDLLQRIETKSEEEKsyfenvDIDQLSESLCVSAIKYFDLKQHRNSDYKFSYDNMLNVKGNTGIYIIYGY 480
Cdd:PLN02286 392 LLDEAKSRSKAALIERGKDSEWTPE------ELEQAAEAVGYGAVKYADLKNNRLTNYTFSFDQMLDLKGNTAVYLLYAH 465
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 481 SRICSIFRKSTINVEDISKD-ELSLTSIYEINLGLHILKFPDIFYYILKNMLVHKLAEYMYDLTTTFTAFYENCKVLNNE 559
Cdd:PLN02286 466 ARICSIIRKSGKDIDELKKTgKIVLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLSEKFTKFYSNCKVNGSE 545
|
570 580 590
....*....|....*....|....*....|.
gi 124805963 560 NEKSRLLLCSITKSLLKLCMELLGMKPIEKL 590
Cdd:PLN02286 546 EETSRLLLCEATAIVMRKCFHLLGITPLYRL 576
|
|
| ArgS |
COG0018 |
Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Arginyl-tRNA ... |
7-589 |
8.61e-147 |
|
Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Arginyl-tRNA synthetase is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases
Pssm-ID: 439789 [Multi-domain] Cd Length: 574 Bit Score: 435.73 E-value: 8.61e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 7 ITKKIKTIFQNSIQKCFPSISE-DAIVTYA-NLKFGHYQCNNAINIYKKYGKelnyeNAQKISEFIISNINET-IFEEIK 83
Cdd:COG0018 3 IKEELAEAIAAALAALGAGLEEpDILVERPkDPEHGDYATNVAMQLAKPLKK-----NPREIAEEIAEALDADpLVEKVE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 84 SSPQGFITVKLSKDYIETSLKKLFngekidisinindikESNENYG--------NVLVDFSSPNIAKEMHVGHLRSTIIG 155
Cdd:COG0018 78 IAGPGFINFFLSPAALAAVLKEIL---------------ADGEDYGrsdagkgkKVVVEYVSANPTKPLHVGHLRGAVIG 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 156 DSICRVFEFLKINTHRVNHVGDWGTQFGMIINYIKtHYPN--FKEEMPDLSNLTSLYQESKKMYDADKEFEKSSKENAIK 233
Cdd:COG0018 143 DALARILEAAGYDVTRENYINDAGTQIGKLALSLE-RYGEeeIEPESKPDGYLGDLYVKFHKEYEEDPELEDIARELLAK 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 234 LQNNDEDCKFVWNKLCESSKKEFDKLYNILDIKLE-YVGESFYVPM--LSTVLDLLKESKLLTNIGDAICYQSENFK--V 308
Cdd:COG0018 222 LEPGDEEALELWKKAVDWSLEEIKEDLKRLGVEFDvWFSESSLYDSgaVEEVVEELKEKGLLYESDGALWVRLTEFGddK 301
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 309 PLFLQKSNGGYGYDSTDVAALYYRLTQLNCNCVIYVTDIGQLTHFETIFDLIKKTNWgDKNAKLMHVGFGFVLNEDNKKF 388
Cdd:COG0018 302 DRVLVKSDGTYTYFTTDIAYHLYKFERYGFDRVIYVVGADQHGHFKRLFAALKALGY-DPAKDLEHLLFGMVNLRDGEKM 380
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 389 KTRSGTTVKLINLIKEGTERAKrdllQRIETKSEEEKsyfenvdiDQLSESLCVSAIKYFDLKQHRNSDYKFSYDNMLNV 468
Cdd:COG0018 381 STRAGTVVTLDDLLDEAVERAR----EIIEEKSEEEK--------EEIAEQVGIDAVRYFDLSRSRDKDLDFDLDLALSF 448
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 469 KGNTGIYIIYGYSRICSIFRKSTINVEDISKDELS-LTSIYEINLGLHILKFPDIFYYILKNMLVHKLAEYMYDLTTTFT 547
Cdd:COG0018 449 EGNTNPYVQYAHARICSILRKAGEELDGLAEADLSlLTEEEELALIKKLAQFPEVVEEAAEDLEPHRIANYLYELAKAFH 528
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 124805963 548 AFYENCKVLNNENE---KSRLLLCSITKSLLKLCMELLGMKPIEK 589
Cdd:COG0018 529 SFYNACRILKAEDEelrAARLALVAATAQVLKNGLGLLGISAPER 573
|
|
| argS |
PRK01611 |
arginyl-tRNA synthetase; Reviewed |
7-589 |
9.21e-121 |
|
arginyl-tRNA synthetase; Reviewed
Pssm-ID: 234964 [Multi-domain] Cd Length: 507 Bit Score: 366.40 E-value: 9.21e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 7 ITKKIKTIFQNSIQKCFPSISEDAIVTYA-NLKFGHYQCNNAINIYKKYGKelnyeNAQKISEFIISNInetifEEIKSS 85
Cdd:PRK01611 5 IKELLAEALAAALEAGGLPELPAVLIERPkDPEHGDYATNVAMQLAKKLKK-----NPREIAEEIVEAI-----EKVEIA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 86 PQGFITVKLSKDYIETSLKKLFNGEkidisinindikesnENYG--------NVLVDFSSPNIAKEMHVGHLRSTIIGDS 157
Cdd:PRK01611 75 GPGFINFFLDPAALAELVLAILEAG---------------ERYGrsdigkgkKVVVEYVSANPTGPLHVGHLRSAVIGDA 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 158 ICRVFEFLKINTHRVNHVGDWGTQFGMIINYIKThypnfkeempdlsnltslyqeskkmydadkefeksskenaiklqnn 237
Cdd:PRK01611 140 LARILEFAGYDVTREYYVNDAGTQIGMLIASLEL---------------------------------------------- 173
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 238 dedckfVWNKLCESSKKEFDKLYNILDIKLE---YVGESFYVPMLSTVLDLLKESKLLTNIGD-AICYQSENF--KVPLF 311
Cdd:PRK01611 174 ------LWRKAVDISLDEIKEDLDRLGVHFDvwfSESELYYNGKVDEVVEDLKEKGLLYVESDgALWVRLTEFgdDKDRV 247
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 312 LQKSNGGYGYDSTDVAALYYRLTQLNCncVIYVTDIGQLTHFETIFDLIKKTNWGDKNAK-LMHVGFGFVLNEDNKKFKT 390
Cdd:PRK01611 248 LIKSDGTYTYFTRDIAYHLYKFERFDR--VIYVVGADHHGHFKRLKAALKALGYDPDALEvLLHQMVGLVRGGEGVKMST 325
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 391 RSGTTVKLINLIKEGTERAKRDLlqrietkseEEKSYFENVDIDqlseslcvsAIKYFDLKQHRNSDYKFSYDNMLNVKG 470
Cdd:PRK01611 326 RAGNVVTLDDLLDEAVGRARELI---------EEKEIAEAVGID---------AVRYFDLSRSRDKDLDFDLDLALSFEG 387
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 471 NTGIYIIYGYSRICSIFRKSTInvEDISKDELSLTSIYEINLGLHILKFPDIFYYILKNMLVHKLAEYMYDLTTTFTAFY 550
Cdd:PRK01611 388 NNPPYVQYAHARICSILRKAAE--AGIDLLLALLTEEEEKELIKKLAEFPEVVESAAEELEPHRIANYLYELAGAFHSFY 465
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 124805963 551 ENCKVLNNENE--KSRLLLCSITKSLLKLCMELLGMKPIEK 589
Cdd:PRK01611 466 NRVLLKDEEEElrNARLALVKATAQVLKNGLDLLGISAPER 506
|
|
| argS |
TIGR00456 |
arginyl-tRNA synthetase; This model recognizes arginyl-tRNA synthetase in every completed ... |
7-590 |
4.05e-114 |
|
arginyl-tRNA synthetase; This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori. [Protein synthesis, tRNA aminoacylation]
Pssm-ID: 273085 [Multi-domain] Cd Length: 563 Bit Score: 351.26 E-value: 4.05e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 7 ITKKIKTIFQNSIQKCFPS-ISEDAIVTYANLKFGHYQCNNAINIYKKYGKelnyeNAQKISEFIISNINETIFEEIKSS 85
Cdd:TIGR00456 1 IKTLLKEEISQALLKAGLSkESEILVEETPNPEFGDYASNIAFPLAKVLKK-----APRQIAEEIVLKLKTGEIIEKVEA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 86 PQGFITVKLSKDYIETSLKKLFNGEKIDISININDIKEsnenygnVLVDFSSPNIAKEMHVGHLRSTIIGDSICRVFEFL 165
Cdd:TIGR00456 76 AGPFINFFLSPQKLLERLIQKILTQKEKYGSKKLKNKK-------IIIEFSSANPAGPLHVGHLRNAIIGDSLARILEFL 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 166 KINTHRVNHVGDWGTQFGMIINYIKTHYP---NFKEEMPDlSNLTSLYQESKKMYDADKEFEKSSKENAIKLQNNDEDCK 242
Cdd:TIGR00456 149 GYDVIREYYVNDWGRQFGLLALGVEKFGNealNIAVKKPD-HGLEGFYVEINKRLEENEELEEEARELFVKLESGDEETI 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 243 FVWNKLCESSKKEFDKLYNILDIKLE---YVGESFYVPMLSTVLDLLKESKLLTNIGdAICYQSENF--KVPLFLQKSNG 317
Cdd:TIGR00456 228 KLWKRLVEYSLEGIKETYDRLNIHFDsfvWEGESVKNGMLPKVLEDLKEKGLVVEDG-ALWLDLTLFgdKKDRVLQKSDG 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 318 GYGYDSTDVAALYYRLTQlNCNCVIYVTDIGQLTHFETIFDLIKKTnwGDKNAKLMHVGFGFVLNednKKFKTRSGTTVK 397
Cdd:TIGR00456 307 TYLYLTTDIAYHLDKLER-GFDKMIYVWGSDHHLHIAQMFAILEKL--GYKKKELEHLNFGMVPL---YSMKTRRGNVIS 380
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 398 LINLIKEGTERAKRDLLQRIETKSEEeksyfenvdidqLSESLCVSAIKYFDLKQHRNSDYKFSYDNMLNVKGNTGIYII 477
Cdd:TIGR00456 381 LDNLLDEASKRAGNVITIKNDLEEEK------------VADAVGIGAVRYFDLSKNRTTDYVFDWDAMLSFEGNTAPYIQ 448
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 478 YGYSRICSIFRKSTINVEDISKDELSLTSIYEINLGLHILKFPDIFYYILKNMLVHKLAEYMYDLTTTFTAFYENCKVLN 557
Cdd:TIGR00456 449 YAHARICSILRKAEIDGEKLIADDFELLEEKEKELLKLLLQFPEVLEEAAEELEPHVLTNYLYELASLFSSFYKACPVLD 528
|
570 580 590
....*....|....*....|....*....|....*
gi 124805963 558 NENE--KSRLLLCSITKSLLKLCMELLGMKPIEKL 590
Cdd:TIGR00456 529 AENElaAARLALLKATRQTLKNGLDLLGIEPPERM 563
|
|
| tRNA-synt_1d |
pfam00750 |
tRNA synthetases class I (R); Other tRNA synthetase sub-families are too dissimilar to be ... |
131-462 |
5.14e-98 |
|
tRNA synthetases class I (R); Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only arginyl tRNA synthetase.
Pssm-ID: 395607 [Multi-domain] Cd Length: 348 Bit Score: 302.57 E-value: 5.14e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 131 VLVDFSSPNIAKEMHVGHLRSTIIGDSICRVFEFLKINTHRVNHVGDWGTQFGMIINYIKTHYPNFKEEMPDLSNLTSLY 210
Cdd:pfam00750 21 VVVDFSSPNIAKEMHVGHLRSTIIGDALSRLLEFLGHSVIRANHVGDWGTQFGMLIAGLEKYQDEKTLQEMPIQDLEDFY 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 211 QESKKMYDADKEFEKSSKENAIKLQNNDEDCKFVWNKLCESSKKEFDKLYNILDIKLEYVGESFYVPMLSTVLDLLKESK 290
Cdd:pfam00750 101 REAKKHYDEEEEFAERARNYVVKLQSGDEYWRRMWKLIVDITMTQNQRLYDRLDVTLTEMGESLYNPMMNEIVKDFKKNG 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 291 LLTNI-GDAICYQSENFK-VPLFLQKSNGGYGYDSTDVAALYYRLTQLNCNCVIYVTDIGQLTHFETIFDLIKKTNWGDK 368
Cdd:pfam00750 181 LVVEIdGALVVFLDEFGKpMGVIVQKSDGGYLYTTTDIAAAKYRYETLHADRMLYVIDSRQSQHMQQAFAILRKAGYVPE 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 369 NAKLMHVGFGFVLNEDNKKFKTRSGTTVKLINLIKEGTERAkrdlLQRIETKSEEEKSYFENvdIDQLSESLCVSAIKYF 448
Cdd:pfam00750 261 SKDLEHINFGMVLGKDGKPFKTRKGGTVKLADLLDEALERA----LQLIMEKNKDKILQADE--LEAVADAVGIGAIKYA 334
|
330
....*....|....
gi 124805963 449 DLKQHRNSDYKFSY 462
Cdd:pfam00750 335 DLSKNRTNDYIFDW 348
|
|
| ArgRS_core |
cd00671 |
catalytic core domain of arginyl-tRNA synthetases; Arginyl tRNA synthetase (ArgRS) catalytic ... |
130-393 |
5.90e-59 |
|
catalytic core domain of arginyl-tRNA synthetases; Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Pssm-ID: 185675 [Multi-domain] Cd Length: 212 Bit Score: 195.86 E-value: 5.90e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 130 NVLVDFSSPNIAKEMHVGHLRSTIIGDSICRVFEFLKINTHRVNHVGDWGTQFGMIINYIKthypnfkeempdlsnltsl 209
Cdd:cd00671 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLE------------------- 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 210 yqeskkmydadkefeksskenaiklqnndedckfVWNKLCESSKKEFDKLYNILDIKL-EYVGESFYVPMLSTVLDLLKE 288
Cdd:cd00671 62 ----------------------------------KWRKLVEESIKADLETYGRLDVRFdVWFGESSYLGLMGKVVELLEE 107
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 289 SKLLTNIGDAICYQSENFK--VPLFLQKSNGGYGYDSTDVAALYYRLtQLNCNCVIYVTDIGQLTHFETIFDLIKKTNWG 366
Cdd:cd00671 108 LGLLYEEDGALWLDLTEFGddKDRVLVRSDGTYTYFTRDIAYHLDKF-ERGADKIIYVVGADHHGHFKRLFAALELLGYD 186
|
250 260
....*....|....*....|....*..
gi 124805963 367 DKNaKLMHVGFGFVLNEDNKKFKTRSG 393
Cdd:cd00671 187 EAK-KLEHLLYGMVNLPKEGKMSTRAG 212
|
|
| Anticodon_Ia_Arg |
cd07956 |
Anticodon-binding domain of arginyl tRNA synthetases; This domain is found in arginyl tRNA ... |
442-590 |
3.10e-39 |
|
Anticodon-binding domain of arginyl tRNA synthetases; This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Pssm-ID: 153410 [Multi-domain] Cd Length: 156 Bit Score: 140.81 E-value: 3.10e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 442 VSAIKYFDLKQHRNSDYKFSYDNMLNVKGNTGIYIIYGYSRICSIFRKSTINVEDISK-DELSLTSIYEINLGLHILKFP 520
Cdd:cd07956 5 VGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGETIEAEADaDLSLLPEPDERDLILLLAKFP 84
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 124805963 521 DIFYYILKNMLVHKLAEYMYDLTTTFTAFYENCKVLNNENE--KSRLLLCSITKSLLKLCMELLGMKPIEKL 590
Cdd:cd07956 85 EVVKNAAETLEPHTIATYLFDLAHAFSKFYNACPVLGAEEElrNARLALVAAARQVLANGLDLLGIEAPERM 156
|
|
| DALR_1 |
pfam05746 |
DALR anticodon binding domain; This all alpha helical domain is the anticodon binding domain ... |
476-590 |
3.49e-34 |
|
DALR anticodon binding domain; This all alpha helical domain is the anticodon binding domain in Arginyl and glycyl tRNA synthetase. This domain is known as the DALR domain after characteriztic conserved amino acids.
Pssm-ID: 399042 [Multi-domain] Cd Length: 117 Bit Score: 125.46 E-value: 3.49e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 476 IIYGYSRICSIFRKSTINVEDISKDELSLTSIYEINLGLHILKFPDIFYYILKNMLVHKLAEYMYDLTTTFTAFYENCKV 555
Cdd:pfam05746 1 LQYAHARICSILRKAGELGINLDIDADLLTEEEEKELLKALLQFPEVLEEAAEELEPHRLANYLYELASAFHSFYNNCRV 80
|
90 100 110
....*....|....*....|....*....|....*..
gi 124805963 556 LNNENE--KSRLLLCSITKSLLKLCMELLGMKPIEKL 590
Cdd:pfam05746 81 LDEDNEerNARLALLKAVRQVLKNGLDLLGIEAPEKM 117
|
|
| DALR_1 |
smart00836 |
DALR anticodon binding domain; This all alpha helical domain is the anticodon binding domain ... |
478-590 |
1.12e-28 |
|
DALR anticodon binding domain; This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids.
Pssm-ID: 214846 [Multi-domain] Cd Length: 122 Bit Score: 110.36 E-value: 1.12e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 478 YGYSRICSIFRKS---TINVEDISKDELS-LTSIYEINLGLHILKFPDIFYYILKNMLVHKLAEYMYDLTTTFTAFYENC 553
Cdd:smart00836 3 YAHARICSILRKAgeaGETLPDIADADLSlLTEPEEWALLLKLARFPEVLEAAAEQLEPHRLANYLYDLAAAFHSFYNRV 82
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 124805963 554 KVLNNENE---KSRLLLCSITKSLLKLCMELLGMKPIEKL 590
Cdd:smart00836 83 RVLGEENPelrKARLALLKAVRQVLANGLRLLGISAPERM 122
|
|
| Arg_tRNA_synt_N |
pfam03485 |
Arginyl tRNA synthetase N terminal domain; This domain is found at the amino terminus of ... |
11-94 |
3.28e-11 |
|
Arginyl tRNA synthetase N terminal domain; This domain is found at the amino terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition.
Pssm-ID: 460943 [Multi-domain] Cd Length: 83 Bit Score: 59.55 E-value: 3.28e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 11 IKTIFQNSIQKCFPSISED---AIVTYANLKFGHYQCNNAINIYKKYGKelnyeNAQKISEFIISNINET-IFEEIKSSP 86
Cdd:pfam03485 1 LKKAIAKALSKLGGPDLELidiVIETPKNPKFGDYATNVAMQLAKKLKK-----NPREIAEEIAEKLEKSdIIEKVEVAG 75
|
....*...
gi 124805963 87 QGFITVKL 94
Cdd:pfam03485 76 PGFINFFL 83
|
|
| Arg_tRNA_synt_N |
smart01016 |
Arginyl tRNA synthetase N terminal dom; This domain is found at the amino terminus of Arginyl ... |
9-94 |
5.17e-10 |
|
Arginyl tRNA synthetase N terminal dom; This domain is found at the amino terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition.
Pssm-ID: 214975 [Multi-domain] Cd Length: 85 Bit Score: 56.05 E-value: 5.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124805963 9 KKIKTIFQNSIQKCFPS--ISEDAIVTYA-NLKFGHYQCNNAINIYKKYGKelnyeNAQKISEFIISNINET-IFEEIKS 84
Cdd:smart01016 1 DLLKEAIAEALKKALGVegEPIDIALERPkDPDHGDYATNVAFRLAKKLKK-----NPRELAEEIAEKLPKSdLVEKVEI 75
|
90
....*....|
gi 124805963 85 SPQGFITVKL 94
Cdd:smart01016 76 AGPGFINFFL 85
|
|
| class_I_aaRS_core |
cd00802 |
catalytic core domain of class I amino acyl-tRNA synthetase; Class I amino acyl-tRNA ... |
133-200 |
5.42e-07 |
|
catalytic core domain of class I amino acyl-tRNA synthetase; Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Pssm-ID: 173901 [Multi-domain] Cd Length: 143 Bit Score: 49.40 E-value: 5.42e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 124805963 133 VDFSSPNIAKEMHVGHLRSTIIGDSICRVFEFLKINTHRVNHVGDWGTQFGMIINYIKTHYPNFKEEM 200
Cdd:cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGENAKAFVERW 68
|
|
| |
