NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1390102804|ref|XP_004935928|]
View 

stathmin-4 isoform X2 [Gallus gallus]

Protein Classification

stathmin family protein( domain architecture ID 10467180)

stathmin family protein is a small regulatory phosphoprotein, similar to human stathmin that is involved in the regulation of the microtubule filament system by destabilizing microtubules

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Stathmin pfam00836
Stathmin family; The Stathmin family of proteins play an important role in the regulation of ...
 48-169 1.49e-55

Stathmin family; The Stathmin family of proteins play an important role in the regulation of the microtubule cytoskeleton. They regulate microtubule dynamics by promoting depolymerization of microtubules and/or preventing polymerization of tubulin heterodimers.


:

Pssm-ID: 459956 [Multi-domain]  Cd Length: 136  Bit Score: 173.30  E-value: 1.49e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390102804  48 DMEVIELNKRTSGQSFEVILKPPSFDGIPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQ 127
Cdd:pfam00836   2 DTEVKELEKRASGQAFEVILKPPSVNAAPPKLSLSPKKKDSSLEEIQKKLEAAEERRKSLEAQKLKQLAEKREKEEEALQ 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1390102804 128 KAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEK 169
Cdd:pfam00836  82 KADEENNNFSKMAEEKLKQKMEAYKENREAQIAALKEKLKEK 123
 
Name Accession Description Interval E-value
Stathmin pfam00836
Stathmin family; The Stathmin family of proteins play an important role in the regulation of ...
 48-169 1.49e-55

Stathmin family; The Stathmin family of proteins play an important role in the regulation of the microtubule cytoskeleton. They regulate microtubule dynamics by promoting depolymerization of microtubules and/or preventing polymerization of tubulin heterodimers.


Pssm-ID: 459956 [Multi-domain]  Cd Length: 136  Bit Score: 173.30  E-value: 1.49e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390102804  48 DMEVIELNKRTSGQSFEVILKPPSFDGIPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQ 127
Cdd:pfam00836   2 DTEVKELEKRASGQAFEVILKPPSVNAAPPKLSLSPKKKDSSLEEIQKKLEAAEERRKSLEAQKLKQLAEKREKEEEALQ 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1390102804 128 KAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEK 169
Cdd:pfam00836  82 KADEENNNFSKMAEEKLKQKMEAYKENREAQIAALKEKLKEK 123
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 90-167 4.09e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 37.44  E-value: 4.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390102804  90 LEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQ--KAIEENNNFIKMAKEKLAQ------KMESNKENREAHLAA 161
Cdd:COG4942    29 LEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAAlaRRIRALEQELAALEAELAElekeiaELRAELEAQKEELAE 108


                  ....*.
gi 1390102804 162 MLERLQ 167
Cdd:COG4942   109 LLRALY 114
 
Name Accession Description Interval E-value
Stathmin pfam00836
Stathmin family; The Stathmin family of proteins play an important role in the regulation of ...
 48-169 1.49e-55

Stathmin family; The Stathmin family of proteins play an important role in the regulation of the microtubule cytoskeleton. They regulate microtubule dynamics by promoting depolymerization of microtubules and/or preventing polymerization of tubulin heterodimers.


Pssm-ID: 459956 [Multi-domain]  Cd Length: 136  Bit Score: 173.30  E-value: 1.49e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390102804  48 DMEVIELNKRTSGQSFEVILKPPSFDGIPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQ 127
Cdd:pfam00836   2 DTEVKELEKRASGQAFEVILKPPSVNAAPPKLSLSPKKKDSSLEEIQKKLEAAEERRKSLEAQKLKQLAEKREKEEEALQ 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1390102804 128 KAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEK 169
Cdd:pfam00836  82 KADEENNNFSKMAEEKLKQKMEAYKENREAQIAALKEKLKEK 123
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 90-167 4.09e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 37.44  E-value: 4.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390102804  90 LEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQ--KAIEENNNFIKMAKEKLAQ------KMESNKENREAHLAA 161
Cdd:COG4942    29 LEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAAlaRRIRALEQELAALEAELAElekeiaELRAELEAQKEELAE 108


                  ....*.
gi 1390102804 162 MLERLQ 167
Cdd:COG4942   109 LLRALY 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH