|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
77-879 |
5.20e-22 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 103.21 E-value: 5.20e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 77 KLTRENNELHLEVLKLK-EQSDHHIKDLKASLRRAENEAADLRFLNNQYVHKIKLLEKESKAKTEKIQQLQEK--NLQAV 153
Cdd:TIGR02168 217 ELKAELRELELALLVLRlEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKElyALANE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 154 VQTPGGRKRNIPFRRQRMQIDQPvppsavsaypvpqpedpYIADLLQVADNRIQELQSEVTQLQEKLEISENGKKNYSKQ 233
Cdd:TIGR02168 297 ISRLEQQKQILRERLANLERQLE-----------------ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 234 VEYLQQSNKELENRIQDLLDTKKNVTSEVVHLSNKNEELCQELNEIDHLAQQLERHKEI---VLETADKEIGEAKK---- 306
Cdd:TIGR02168 360 LEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERlqqEIEELLKKLEEAELkelq 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 307 -EIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDKENLELLLNQLEQEKQRLTEKTEN--FEIKERE--- 380
Cdd:TIGR02168 440 aELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGvkALLKNQSgls 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 381 ----LVLEIERMRLEYGIALGDKSPSRLDAFVKtleDDRDYYKRELEYLQKMIKRRPS----PSRRSPEKSEDLRLITRE 452
Cdd:TIGR02168 520 gilgVLSELISVDEGYEAAIEAALGGRLQAVVV---ENLNAAKKAIAFLKQNELGRVTflplDSIKGTEIQGNDREILKN 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 453 RDELQSMLDRFEKHMIEIQSNVKLLTAerdrlNILYEQSQSELNRLRREAKHNlvsQSHVGEDGDASLADFRRLmaeKES 532
Cdd:TIGR02168 597 IEGFLGVAKDLVKFDPKLRKALSYLLG-----GVLVVDDLDNALELAKKLRPG---YRIVTLDGDLVRPGGVIT---GGS 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 533 LREKLKIQQEAANLEKskmqhdisvLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAELC 612
Cdd:TIGR02168 666 AKTNSSILERRREIEE---------LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLA 736
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 613 SLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTISVLDKEKDNLQETVDEKT 692
Cdd:TIGR02168 737 RLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLN 816
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 693 EKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDL 772
Cdd:TIGR02168 817 EEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSEL 896
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 773 ATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESLIaskekenQELLEKFRmlhtqaEDWEIKAHQAEGESSSI 852
Cdd:TIGR02168 897 EELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRI-------DNLQERLS------EEYSLTLEEAEALENKI 963
|
810 820
....*....|....*....|....*..
gi 2024408252 853 rlellsvDTDRRHLRERVELLEKEIQE 879
Cdd:TIGR02168 964 -------EDDEEEARRRLKRLENKIKE 983
|
|
| cc_Cep135_MBD |
cd22292 |
coiled-coil microtubule binding domain of centrosomal protein of 135 kDa (Cep135) and similar ... |
81-142 |
5.85e-21 |
|
coiled-coil microtubule binding domain of centrosomal protein of 135 kDa (Cep135) and similar proteins; Cep135, also called centrosomal protein 4, is involved in early centriole assembly, duplication, biogenesis, and formation. It is required for the recruitment of CEP295 to the proximal end of new-born centrioles at the centriolar microtubule wall during early S phase in a PLK4-dependent manner. This model corresponds to a conserved coiled-coil domain of Cep135, which is critical for microtubule binding.
Pssm-ID: 412088 [Multi-domain] Cd Length: 62 Bit Score: 87.24 E-value: 5.85e-21
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024408252 81 ENNELHLEVLKLKEQSDHHIKDLKASLRRAENEAADLRFLNNQYVHKIKLLEKESKAKTEKI 142
Cdd:cd22292 1 ENNELHLELIKLKEESDAKIKDLKSSLRKLEHENADLRFLNSQYLHKIKVLEKESKAKSEKI 62
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
271-1011 |
5.07e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 87.03 E-value: 5.07e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 271 ELCQELNEIDH--LAQQLERHKEiVLETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKAd 348
Cdd:TIGR02168 217 ELKAELRELELalLVLRLEELRE-ELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALA- 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 349 dkenlelllnqleQEKQRLTEKTEnfEIKERELVLEIERMRLEYGIALGDKSPSRLDAFVKTLEDdrdyykrELEYLQKM 428
Cdd:TIGR02168 295 -------------NEISRLEQQKQ--ILRERLANLERQLEELEAQLEELESKLDELAEELAELEE-------KLEELKEE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 429 IKRRPSPSRRSPEKSEDLRLITRERDELqsmLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAKHNLVS 508
Cdd:TIGR02168 353 LESLEAELEELEAELEELESRLEELEEQ---LETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKK 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 509 QShvgedgDASLADFRRLMAEKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLEN 588
Cdd:TIGR02168 430 LE------EAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEG 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 589 ------ELKLKSSKLIQTSDDSSQL-----KAELCSLHLLNEQLQR-TVEDL-----------QHRF---------SLKK 636
Cdd:TIGR02168 504 fsegvkALLKNQSGLSGILGVLSELisvdeGYEAAIEAALGGRLQAvVVENLnaakkaiaflkQNELgrvtflpldSIKG 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 637 DELQSAQEEIVKLEEK----IDRLNQKSTSQDEAVNVLRSTISVLD--KEKDNLQETVDEKtEKIACLDDNLANKEKTIT 710
Cdd:TIGR02168 584 TEIQGNDREILKNIEGflgvAKDLVKFDPKLRKALSYLLGGVLVVDdlDNALELAKKLRPG-YRIVTLDGDLVRPGGVIT 662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 711 hlrltlseleSSTDQLKDLLSSRDREISSLRRQLDASHTEIAETgrvkEIALKENRRLQDDLATMTRENQAvssELEDAI 790
Cdd:TIGR02168 663 ----------GGSAKTNSSILERRREIEELEEKIEELEEKIAEL----EKALAELRKELEELEEELEQLRK---ELEELS 725
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 791 REKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKFRMLHTQAEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERV 870
Cdd:TIGR02168 726 RQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL 805
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 871 ELLEKEIQEHMIAHQAYESQISSITKNMSKLEEDIKREHQDKSSVLADLTSVRELCVKLEASKDLLSRQLASKSMDYEKV 950
Cdd:TIGR02168 806 DELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASL 885
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2024408252 951 LGELEDVKSEAELLKKQLSSERLTIQNLETLLATSRDKEFQNHLTSHEKDSEIQLLKDKLT 1011
Cdd:TIGR02168 886 EEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS 946
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
408-1060 |
2.99e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 74.72 E-value: 2.99e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 408 VKTLEDDRDYYKRELEYLQKMIKRRPSPSRRSPEKSEdlrlitRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNIL 487
Cdd:TIGR02169 200 LERLRREREKAERYQALLKEKREYEGYELLKEKEALE------RQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQL 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 488 YEQSQSELNRLRREAKHNLVSQSHvgeDGDASLADFRRLMAEKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFEL 567
Cdd:TIGR02169 274 LEELNKKIKDLGEEEQLRVKEKIG---ELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERK 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 568 ERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAELcslhllnEQLQRTVEDLQHRFSLKKDELQSAQEEIV 647
Cdd:TIGR02169 351 RRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKL-------EKLKREINELKRELDRLQEELQRLSEELA 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 648 KLEEKIDRLNQKSTSQDEAVNVLRSTISVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLK 727
Cdd:TIGR02169 424 DLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASE 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 728 DLLSSRDREISSLRRQLDASHTEIAETGRVKE-----IALKENRRLQ-----DDL----------------ATMTRENQA 781
Cdd:TIGR02169 504 ERVRGGRAVEEVLKASIQGVHGTVAQLGSVGEryataIEVAAGNRLNnvvveDDAvakeaiellkrrkagrATFLPLNKM 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 782 VSSELEDAIREKEEMKTRVHNYITEVSRFES---------LIASKEKENQELLEKFRML----------------HTQAE 836
Cdd:TIGR02169 584 RDERRDLSILSEDGVIGFAVDLVEFDPKYEPafkyvfgdtLVVEDIEAARRLMGKYRMVtlegelfeksgamtggSRAPR 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 837 DWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQEHMIAHQAYESQISSITKNMSKLEEDIKREHQDKSSVL 916
Cdd:TIGR02169 664 GGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELE 743
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 917 ADLTSVRELCVKLEASKDLLSRQLASKSMDYEKVLGELEDVK-----SEAELLKKQLSSERLTIQNLETLLATSRDKEFQ 991
Cdd:TIGR02169 744 EDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEarlshSRIPEIQAELSKLEEEVSRIEARLREIEQKLNR 823
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2024408252 992 NHLTSHEKDSEIQLLKDKLTLAEGKLSSHNREVSMLRSKVAQLQT---DYDVLKRQLTTERF----ERERAIQEMR 1060
Cdd:TIGR02169 824 LTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEeleELEAALRDLESRLGdlkkERDELEAQLR 899
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
582-827 |
1.29e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.20 E-value: 1.29e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 582 RIKSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKST 661
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 662 SQDEAVNVLRSTISVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLR 741
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 742 RQLDASHTEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESLIASKEKEN 821
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
....*.
gi 2024408252 822 QELLEK 827
Cdd:COG1196 473 ALLEAA 478
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
203-934 |
2.11e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 68.56 E-value: 2.11e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 203 DNRIQELQSEVTQLQEklEISENGKKNYSKQVEyLQQSNKEL----ENRIQDLLDTKKNVTSEVVHLSNKNEELCQELNE 278
Cdd:TIGR02169 243 ERQLASLEEELEKLTE--EISELEKRLEEIEQL-LEELNKKIkdlgEEEQLRVKEKIGELEAEIASLERSIAEKERELED 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 279 IDHLAQQLERHKEIVLETA---DKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDKENLEL 355
Cdd:TIGR02169 320 AEERLAKLEAEIDKLLAEIeelEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKR 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 356 LLNQLEQEKQRLTEKTENFEIKERELVLEIERMRleygialgdkspSRLDAFVKTLEDDRDYYKRELEYLQKMIKRRPSP 435
Cdd:TIGR02169 400 EINELKRELDRLQEELQRLSEELADLNAAIAGIE------------AKINELEEEKEDKALEIKKQEWKLEQLAADLSKY 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 436 SRRSPEKSEDLRLITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQ---SQSELNRLRRE-------AKHN 505
Cdd:TIGR02169 468 EQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGvhgTVAQLGSVGERyataievAAGN 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 506 LVSQSHVGEDGDA--SLADFRRLMAEKESLREKLKIQQEAANLEKSKMQHDISVLENNI---QQFE------------LE 568
Cdd:TIGR02169 548 RLNNVVVEDDAVAkeAIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDLVefdPKYEpafkyvfgdtlvVE 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 569 RCELKSTISIlKERIKSLENEL------------KLKSSKLIQTSD--DSSQLKAELCSLHLLNEQLQRTVEDLQHRFSL 634
Cdd:TIGR02169 628 DIEAARRLMG-KYRMVTLEGELfeksgamtggsrAPRGGILFSRSEpaELQRLRERLEGLKRELSSLQSELRRIENRLDE 706
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 635 KKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTISVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRL 714
Cdd:TIGR02169 707 LSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEA 786
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 715 TLSEleSSTDQLKDLLSSRDREISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKE 794
Cdd:TIGR02169 787 RLSH--SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKE 864
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 795 EMKTRVHNYITEVSRFESLIASKEKENQELLEKFRMLHTQAEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLE 874
Cdd:TIGR02169 865 ELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDE 944
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 875 KEIQEHMIAHQAYEsQISSITKNMSKLEEDIKREHQDKSSVLADLTSVRELCVKLEASKD 934
Cdd:TIGR02169 945 EIPEEELSLEDVQA-ELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERK 1003
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
265-977 |
5.52e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 66.97 E-value: 5.52e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 265 LSNKNEELCQELNEIDHLAQQLErHKEIVLETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELF 344
Cdd:TIGR04523 28 ANKQDTEEKQLEKKLKTIKNELK-NKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLS 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 345 GKADDKENLELLLNQLEQEKQRLTEKTEnfEIKERELVLEIERMRLEYGIALGDKSPSRLDAFVKTLEDDRDYYKRELEY 424
Cdd:TIGR04523 107 KINSEIKNDKEQKNKLEVELNKLEKQKK--ENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLN 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 425 LQKMIKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAKH 504
Cdd:TIGR04523 185 IQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNK 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 505 NLVSQSHvgedgdasladfrrlmAEKESLREKLKIQQEAANLEKSKMQhdISVLENNIQQFELErcELKSTISILKERIK 584
Cdd:TIGR04523 265 IKKQLSE----------------KQKELEQNNKKIKELEKQLNQLKSE--ISDLNNQKEQDWNK--ELKSELKNQEKKLE 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 585 SLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQD 664
Cdd:TIGR04523 325 EIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQE 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 665 EAVNVLRSTISVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQL 744
Cdd:TIGR04523 405 KLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNL 484
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 745 DAshteiaetgRVKEIALKENrrlqdDLATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESLIASKEKEnqel 824
Cdd:TIGR04523 485 EQ---------KQKELKSKEK-----ELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDE---- 546
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 825 lekfrmlhtqaedweikahqaegesssirleLLSVDTDRRHlrervELLEKEIQEhmiahqayesqissitknmskLEED 904
Cdd:TIGR04523 547 -------------------------------LNKDDFELKK-----ENLEKEIDE---------------------KNKE 569
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024408252 905 IKREHQDKSSVLADLTSVRELCVKLEASKDLLSRQLASKSMDYEKVLGELEDVKSEaellKKQLSSERLTIQN 977
Cdd:TIGR04523 570 IEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKE----NEKLSSIIKNIKS 638
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
205-981 |
7.48e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 66.63 E-value: 7.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 205 RIQELQSEVTQLQEKLEISENGKKNYSKQVEYLQQSN-KELENRIQDLLDTKKNVTSEvvhLSNKNEELCQELNEIDHLA 283
Cdd:TIGR02169 188 RLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEgYELLKEKEALERQKEAIERQ---LASLEEELEKLTEEISELE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 284 QQLERhKEIVLETADKEIGEA--------KKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDKENLEL 355
Cdd:TIGR02169 265 KRLEE-IEQLLEELNKKIKDLgeeeqlrvKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELER 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 356 LLNQLEQEKQRLTEktenfEIKERELVLEIERMRLEYGIALGDKSPSRLDAFVKTLEDdrdyYKRELEYLQKMIKRRPSP 435
Cdd:TIGR02169 344 EIEEERKRRDKLTE-----EYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEK----LKREINELKRELDRLQEE 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 436 SRRSPEKSEDLRL--------ITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNIL---YEQSQSELNRLRREAKH 504
Cdd:TIGR02169 415 LQRLSEELADLNAaiagieakINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLkeeYDRVEKELSKLQRELAE 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 505 NLVSQSHVGEDG----------DASLADFRRLMAEKESLREKL------------------------------------- 537
Cdd:TIGR02169 495 AEAQARASEERVrggraveevlKASIQGVHGTVAQLGSVGERYataievaagnrlnnvvveddavakeaiellkrrkagr 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 538 -------KIQQEAANLEKSKMQHDISVLENNI---QQFE------------LERCELKSTISIlKERIKSLENELKLKSS 595
Cdd:TIGR02169 575 atflplnKMRDERRDLSILSEDGVIGFAVDLVefdPKYEpafkyvfgdtlvVEDIEAARRLMG-KYRMVTLEGELFEKSG 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 596 KLIQTSDDSSqlkaelcSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTIS 675
Cdd:TIGR02169 654 AMTGGSRAPR-------GGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIE 726
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 676 VLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSS-----RDREISSLRRQLDASHTE 750
Cdd:TIGR02169 727 QLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDlearlSHSRIPEIQAELSKLEEE 806
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 751 IAE-TGRVKEIALKENRRLQdDLATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKFR 829
Cdd:TIGR02169 807 VSRiEARLREIEQKLNRLTL-EKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLG 885
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 830 MLHTqaedwEIKAHQAEGESSSIRLELLSVDTDRrhLRERVELLEKEIqehmiahQAYESQISSItknmskleEDIKREH 909
Cdd:TIGR02169 886 DLKK-----ERDELEAQLRELERKIEELEAQIEK--KRKRLSELKAKL-------EALEEELSEI--------EDPKGED 943
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024408252 910 QDKSSVLADLTSVRELCVKLEASKDLLSRQLASKSMDYEKVLGELEDVKSEAELLKKQLSSERLTIQNLETL 981
Cdd:TIGR02169 944 EEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
520-981 |
7.53e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 66.60 E-value: 7.53e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 520 LADFRRLMAEKESLREKLKIQQEAANL----------EKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENE 589
Cdd:PRK02224 215 LAELDEEIERYEEQREQARETRDEADEvleeheerreELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 590 LKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLnqkstsqdeavnv 669
Cdd:PRK02224 295 RDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEEL------------- 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 670 lRSTISVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTI-----------THLRLTLSELESSTDQLKDL---LSSRDR 735
Cdd:PRK02224 362 -REEAAELESELEEAREAVEDRREEIEELEEEIEELRERFgdapvdlgnaeDFLEELREERDELREREAELeatLRTARE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 736 EISSLRRQLDASH-----TEIAETGRVKEIALKENRR--LQDDLATMTRENQAVSSELE------DAIREKEEMKTRVHN 802
Cdd:PRK02224 441 RVEEAEALLEAGKcpecgQPVEGSPHVETIEEDRERVeeLEAELEDLEEEVEEVEERLEraedlvEAEDRIERLEERRED 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 803 YITEVSRFESLIASKEKENQELLEKFRMLHTQAEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKeIQEHMI 882
Cdd:PRK02224 521 LEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER-IRTLLA 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 883 AHQAYESQISSITKNMSKLEEdikREHQDKSSVLADLTSVRELCVKLEASKDLLSRQLASKSMDY-EKVLGELEDVKSEA 961
Cdd:PRK02224 600 AIADAEDEIERLREKREALAE---LNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYlEQVEEKLDELREER 676
|
490 500
....*....|....*....|
gi 2024408252 962 ELLKKQLSSERLTIQNLETL 981
Cdd:PRK02224 677 DDLQAEIGAVENELEELEEL 696
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
271-813 |
3.34e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 64.29 E-value: 3.34e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 271 ELCQELNEIDHLAQQLERHKEIVLETADkEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGK---- 346
Cdd:PRK02224 210 GLESELAELDEEIERYEEQREQARETRD-EADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLrerl 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 347 ---ADDKENLELLLNQLEQEKQRLTEKTENFEIKERELVLEIERMRLEYGIALGDKSPSRLDAfvKTLEDDRDYYKRELE 423
Cdd:PRK02224 289 eelEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDA--DDLEERAEELREEAA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 424 YLQKMIKRRPSPSRRSPEKSEDLrlitreRDELQSMLDRFEKhmieiqsnvklLTAERDRLNILYEQSQSELNRLRREAK 503
Cdd:PRK02224 367 ELESELEEAREAVEDRREEIEEL------EEEIEELRERFGD-----------APVDLGNAEDFLEELREERDELREREA 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 504 hnlvsqshvgeDGDASLADFRRLMAEKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERI 583
Cdd:PRK02224 430 -----------ELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERL 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 584 KSLEnelklksskliqtsdDSSQLKAELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQ 663
Cdd:PRK02224 499 ERAE---------------DLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEA 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 664 DEAVNVLRSTISVLDKEKDNLQETVdEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQ 743
Cdd:PRK02224 564 EEEAEEAREEVAELNSKLAELKERI-ESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAE 642
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024408252 744 LDASHTEIAETGRVKEIALKENrrLQDDLATMTRENQAVSSE---LEDAIREKEEMKTRVHNYITEVSRFESL 813
Cdd:PRK02224 643 FDEARIEEAREDKERAEEYLEQ--VEEKLDELREERDDLQAEigaVENELEELEELRERREALENRVEALEAL 713
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
535-1049 |
4.05e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 4.05e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 535 EKLKIQQEAAN----LEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAE 610
Cdd:TIGR02168 203 KSLERQAEKAErykeLKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEE 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 611 LCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTISVLDKEKDNLQETVDE 690
Cdd:TIGR02168 283 IEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 691 KTEKIACLD--------------DNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRR-----QLDASHTEI 751
Cdd:TIGR02168 363 LEAELEELEsrleeleeqletlrSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKkleeaELKELQAEL 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 752 AETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESL--IASKEKENQELLEKFR 829
Cdd:TIGR02168 443 EELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFseGVKALLKNQSGLSGIL 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 830 MLHTQ----AEDWE----------------------IKAHQAEGESSSIRLELLSVDTDR-RHLRERVELLEKEIQEHMI 882
Cdd:TIGR02168 523 GVLSElisvDEGYEaaieaalggrlqavvvenlnaaKKAIAFLKQNELGRVTFLPLDSIKgTEIQGNDREILKNIEGFLG 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 883 AHQAYESQISSITKNMSKL-------------EEDIKREHQDKSSVLADLTSVRE---------------LCVK-----L 929
Cdd:TIGR02168 603 VAKDLVKFDPKLRKALSYLlggvlvvddldnaLELAKKLRPGYRIVTLDGDLVRPggvitggsaktnssiLERRreieeL 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 930 EASKDLLSRQLASKSMDYEKVLGELEDVKSEAELLKKQLSSERLTIQNLETLLATSRDKEFQNHLTSHEKDSEIQLLKDK 1009
Cdd:TIGR02168 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE 762
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 2024408252 1010 LTLAEGKLSSHNREVSMLRSKVAQLQTDYDVLKRQLTTER 1049
Cdd:TIGR02168 763 IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR 802
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
301-689 |
9.55e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 9.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 301 IGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDKENLELLLNQLEQEKQRLTEKTENFEikERE 380
Cdd:TIGR02168 672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE--ERI 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 381 LVLEIERMRLEYGIALGDKSPSRLDAFVKTLEDDRDYYKRELEYLQkmikrrpspsrrspeksEDLRLITRERDELQSML 460
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK-----------------EELKALREALDELRAEL 812
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 461 DRFEKHMIEIQSNVKLLTAERDRLnilyEQSQSELNRLRREAKHNLVSQSHVGEDGDASLADFRRLMAEKESLREKLKIQ 540
Cdd:TIGR02168 813 TLLNEEAANLRERLESLERRIAAT----ERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEA 888
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 541 QEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELklksskliqtsddsSQLKAELcslhllNEQ 620
Cdd:TIGR02168 889 LALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRI--------------DNLQERL------SEE 948
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 621 LQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDR---------------------LNQKSTSQDEAVNVLRSTISVLDK 679
Cdd:TIGR02168 949 YSLTLEEAEALENKIEDDEEEARRRLKRLENKIKElgpvnlaaieeyeelkerydfLTAQKEDLTEAKETLEEAIEEIDR 1028
|
410
....*....|.
gi 2024408252 680 E-KDNLQETVD 689
Cdd:TIGR02168 1029 EaRERFKDTFD 1039
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
232-746 |
1.42e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 62.39 E-value: 1.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 232 KQVEYLQQSNKELENRIQDLLDTKKNVTSEVVHLSNKNEELCQELNEIDHLAQQLERHKEIvLETADKEIGEAKKEIERK 311
Cdd:PRK03918 179 ERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEE-IEELEKELESLEGSKRKL 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 312 DSEIQDLEETITRLKSELSSCRRQNERLsEELFGKADDKENLELLLNQLEQEKQRLTEKTENFEIKERELVLEIERM--- 388
Cdd:PRK03918 258 EEKIRELEERIEELKKEIEELEEKVKEL-KELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELeek 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 389 -----RLEYGIALGDKSPSRLDAFVKTLED--------DRDYYKRELEYLQKMIKRRPSPSRRSPEKSEDLRLITRERDE 455
Cdd:PRK03918 337 eerleELKKKLKELEKRLEELEERHELYEEakakkeelERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGE 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 456 LQSMLDRFEKHMIEIQSN------VKLLTAERDRLNILYEQSqSELNRLRREAKhnlvSQSHVGEDGDASLADFRRLMAE 529
Cdd:PRK03918 417 LKKEIKELKKAIEELKKAkgkcpvCGRELTEEHRKELLEEYT-AELKRIEKELK----EIEEKERKLRKELRELEKVLKK 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 530 KESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFEL---ERCELKSTISILKERIKSLEnELKLKSSKLIQTSDDSSQ 606
Cdd:PRK03918 492 ESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKlkeKLIKLKGEIKSLKKELEKLE-ELKKKLAELEKKLDELEE 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 607 LKAELcsLHLLNEQLQRTVEDLQHR------FSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTISVLDKE 680
Cdd:PRK03918 571 ELAEL--LKELEELGFESVEELEERlkelepFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKE 648
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2024408252 681 KDNLQETVDEKTEKiaclddnlaNKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQLDA 746
Cdd:PRK03918 649 LEELEKKYSEEEYE---------ELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEE 705
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
274-879 |
3.59e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.11 E-value: 3.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 274 QELNEIDHLAQQLE-RHKEIVLETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDKEN 352
Cdd:COG1196 220 EELKELEAELLLLKlRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 353 LELLLNQLEQEKQRLTEKTENFEIKERELVLEIERMRLEygialgdkspsrldafVKTLEDDRDYYKRELEYLQKMIKRR 432
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEE----------------LEELEEELEEAEEELEEAEAELAEA 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 433 PSPSRRSPEKSEDLRlitRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAKHNLVSQSHV 512
Cdd:COG1196 364 EEALLEAEAELAEAE---EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 513 GEDGDASLADFRRLMAEKESLREKLKIQQEAANLekskmqhdisvLENNIQQFELERCELKSTISILKERIKSLENELK- 591
Cdd:COG1196 441 EEALEEAAEEEAELEEEEEALLELLAELLEEAAL-----------LEAALAELLEELAEAAARLLLLLEAEADYEGFLEg 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 592 LKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLR 671
Cdd:COG1196 510 VKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALA 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 672 STISVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQldashtEI 751
Cdd:COG1196 590 AALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGS------LT 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 752 AETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRvhnyitevsrfesLIASKEKENQELLEKFRML 831
Cdd:COG1196 664 GGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAE-------------AEEERLEEELEEEALEEQL 730
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 2024408252 832 HTQAEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQE 879
Cdd:COG1196 731 EAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
482-987 |
4.80e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 60.90 E-value: 4.80e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 482 DRLNILYEQSQSELNRLRREAK---HNLVSQSHVGEDGDASLADFRRlmAEKESLREKLKIQQEAANLEKSKMQHDISVL 558
Cdd:pfam15921 245 DQLEALKSESQNKIELLLQQHQdriEQLISEHEVEITGLTEKASSAR--SQANSIQSQLEIIQEQARNQNSMYMRQLSDL 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 559 ENNIQQFeleRCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAELCSLhllNEQLQRTVEDLQHR---FSLK 635
Cdd:pfam15921 323 ESTVSQL---RSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNL---DDQLQKLLADLHKRekeLSLE 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 636 KD---------------------ELQSAQEEIVKLEEKIDRLNQKSTSQ-----------DEAVNVLRSTISVLDKEKDN 683
Cdd:pfam15921 397 KEqnkrlwdrdtgnsitidhlrrELDDRNMEVQRLEALLKAMKSECQGQmerqmaaiqgkNESLEKVSSLTAQLESTKEM 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 684 LQETVDEKTEK----------IACLDDNLANKEKTI-------THLR----LTLSELE-------------SSTDQLKDL 729
Cdd:pfam15921 477 LRKVVEELTAKkmtlessertVSDLTASLQEKERAIeatnaeiTKLRsrvdLKLQELQhlknegdhlrnvqTECEALKLQ 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 730 LSSRDREISSLRRQLDASHTEIAETGRV-----------------KEIALKENRRLQDDLATMTRENQAVSSELE----- 787
Cdd:pfam15921 557 MAEKDKVIEILRQQIENMTQLVGQHGRTagamqvekaqlekeindRRLELQEFKILKDKKDAKIRELEARVSDLElekvk 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 788 ------DAIREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKFR----MLHTQAEDWEIKAHQAEGESSSIRLELL 857
Cdd:pfam15921 637 lvnagsERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRnkseEMETTTNKLKMQLKSAQSELEQTRNTLK 716
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 858 SVDTDRRHLRERVELLEKEIQEHMIAHQAYESQISSITKNMSKLEEDIKREHQDKSSVLADLTSVrelcvkleaskdlls 937
Cdd:pfam15921 717 SMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTV--------------- 781
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 2024408252 938 rqlaskSMDYEKVLGELEDVKSEAELLKKQLSSERLTIQNLETLLATSRD 987
Cdd:pfam15921 782 ------ATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQD 825
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
283-907 |
6.51e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.34 E-value: 6.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 283 AQQLERHKEIVLETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELfgkaddkenlelllnqlEQ 362
Cdd:COG1196 209 AEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAEL-----------------EE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 363 EKQRLTEKTENFEIK-ERELVLEIERMRLEYGIALgdkspsrldafvktLEDDRDYYKRELEYLQKmikrrpspsrRSPE 441
Cdd:COG1196 272 LRLELEELELELEEAqAEEYELLAELARLEQDIAR--------------LEERRRELEERLEELEE----------ELAE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 442 KSEDLRLITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREakhnlvsqshvgedgdasLA 521
Cdd:COG1196 328 LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE------------------LL 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 522 DFRRLMAEKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKlksskliQTS 601
Cdd:COG1196 390 EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE-------ALL 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 602 DDSSQLKAELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQdeAVNVLRSTISVLDKEK 681
Cdd:COG1196 463 ELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAG--AVAVLIGVEAAYEAAL 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 682 DN------LQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRD--REISSLRRQLDASHTEIAE 753
Cdd:COG1196 541 EAalaaalQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAavDLVASDLREADARYYVLGD 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 754 TGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRVhnyITEVSRFESLIASKEKENQELLEKFRMLHT 833
Cdd:COG1196 621 TLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSR---RELLAALLEAEAELEELAERLAEEELELEE 697
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024408252 834 QAEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQEHMIAHQAYESQISSITKNMSKLEEDIKR 907
Cdd:COG1196 698 ALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELER 771
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
734-1055 |
1.67e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.93 E-value: 1.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 734 DREISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTR-----------ENQAVSSELEDAIREKEEMKTRVHN 802
Cdd:TIGR02169 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERyqallkekreyEGYELLKEKEALERQKEAIERQLAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 803 YITEVSRFESLIASKEKENQELLEKFRMLHTQAEDweikahQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQEHMI 882
Cdd:TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKD------LGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 883 AHQAYESQISSITKNMSKLEEDIKREHQDKSSV---LADLTSVRELCVKLEASKDLLSRQLASKSMDYEKvlgELEDVKS 959
Cdd:TIGR02169 323 RLAKLEAEIDKLLAEIEELEREIEEERKRRDKLteeYAELKEELEDLRAELEEVDKEFAETRDELKDYRE---KLEKLKR 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 960 EAELLKKQLSSERLTIQNLETLLATSRDKEFQNHLTSHEKDSEIQLLKDKLTLAEGKLSSHNREVSMLRSKVAQLQTDYD 1039
Cdd:TIGR02169 400 EINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYD 479
|
330
....*....|....*.
gi 2024408252 1040 VLKRQLTTERFERERA 1055
Cdd:TIGR02169 480 RVEKELSKLQRELAEA 495
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
101-656 |
1.77e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.79 E-value: 1.77e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 101 KDLKASLRRAENEAadlrflnnqYVHKIKLLEKESKAKTEKIQQLQEKNLQAVVQTpggRKRNIPFRRQRMQIDQpvpps 180
Cdd:COG1196 216 RELKEELKELEAEL---------LLLKLRELEAELEELEAELEELEAELEELEAEL---AELEAELEELRLELEE----- 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 181 avsaypvpqpedpyIADLLQVADNRIQELQSEVTQLQEKLEISENGKKNYSKQVEYLQQSNKELENRIQDLLDTKKNVTS 260
Cdd:COG1196 279 --------------LELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 261 EVVHLSNKNEELCQELNEIDHLAQQLER---HKEIVLETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNE 337
Cdd:COG1196 345 ELEEAEEELEEAEAELAEAEEALLEAEAelaEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELE 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 338 RLSEELFGKADDKENLELLLNQLEQEKQRLTEKTENFEIKERELVLEIERMRLEYGIALGDKSPSR-LDAFVKTLEDDRD 416
Cdd:COG1196 425 ELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAaRLLLLLEAEADYE 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 417 YYKRELEYLQKMIKRRPSPSRRSPEKSEDLRLITRERDELQSML-------DRFEKHMIEIQSNVKLLTAERDRLNILYE 489
Cdd:COG1196 505 GFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALqnivvedDEVAAAAIEYLKAAKAGRATFLPLDKIRA 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 490 QSQSELNRLR----------------REAKHNLVSQSHVGEDGDASLADFRRLMAEKESLREKLK------IQQEAANLE 547
Cdd:COG1196 585 RAALAAALARgaigaavdlvasdlreADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVtlegegGSAGGSLTG 664
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 548 KSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVED 627
Cdd:COG1196 665 GSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEE 744
|
570 580 590
....*....|....*....|....*....|....*
gi 2024408252 628 LQHRFSLKKDE------LQSAQEEIVKLEEKIDRL 656
Cdd:COG1196 745 EELLEEEALEElpeppdLEELERELERLEREIEAL 779
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
279-1058 |
1.96e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.93 E-value: 1.96e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 279 IDHLA--QQLERHKEIVLEtadkEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSE----ELFGKADDKEN 352
Cdd:TIGR02169 159 IDEIAgvAEFDRKKEKALE----ELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEkreyEGYELLKEKEA 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 353 LELLLNQLEQEKQRLTEKTENFEIKERELVLEIERMRLEYgialgdkspSRLDAFVKTL-EDDRDYYKRELEYLQKMIKR 431
Cdd:TIGR02169 235 LERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLL---------EELNKKIKDLgEEEQLRVKEKIGELEAEIAS 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 432 RPSPSRRSPEKSEDLRlitRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAkhnlvsqsh 511
Cdd:TIGR02169 306 LERSIAEKERELEDAE---ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAEL--------- 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 512 vgEDGDaslADFRRLMAEKESLREKLkiqqEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELK 591
Cdd:TIGR02169 374 --EEVD---KEFAETRDELKDYREKL----EKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKE 444
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 592 LKSSKLIQTSDDSSQLKAELcslhllnEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLR 671
Cdd:TIGR02169 445 DKALEIKKQEWKLEQLAADL-------SKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLK 517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 672 S-------TISVLDKEKDNLQ----------------ETVDEKTEKIACLDDNLA--------NKEKTiTHLRLTLSELE 720
Cdd:TIGR02169 518 AsiqgvhgTVAQLGSVGERYAtaievaagnrlnnvvvEDDAVAKEAIELLKRRKAgratflplNKMRD-ERRDLSILSED 596
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 721 SSTDQLKDLLSSRDR----------------EISSLRRQLDASHT-----EIAE-----TG--RVKEIALKENRRLQDDL 772
Cdd:TIGR02169 597 GVIGFAVDLVEFDPKyepafkyvfgdtlvveDIEAARRLMGKYRMvtlegELFEksgamTGgsRAPRGGILFSRSEPAEL 676
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 773 ATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKFRMLHTQAEDWEIKAHQAEGESSSI 852
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENV 756
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 853 RLELLSVDTDRRHLRERVELLEKEIQ--EHMIAHQ----------AYESQISSITKNMSKLEEDIKREHQDKSSVLADLT 920
Cdd:TIGR02169 757 KSELKELEARIEELEEDLHKLEEALNdlEARLSHSripeiqaelsKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQ 836
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 921 SVRELCVKLEASKDLLSRQLASKSMDYEKVLGELEDVKSEAELLKKQLSSERLTIQNLETLLATSRDKEFQNHLTSHEKD 1000
Cdd:TIGR02169 837 ELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKR 916
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024408252 1001 SEIQLLKDKLTLAEGKLSSHNREVSMLRSKVAQLQTDYDVlkrQLTTERFERE---------RAIQE 1058
Cdd:TIGR02169 917 KRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDV---QAELQRVEEEiralepvnmLAIQE 980
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
199-799 |
2.25e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.41 E-value: 2.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 199 LQVADNRIQELQSEVTQLQEKLEISENGKKNYSKQVEYLQQSNKELENRIQDLLDTKKNVTSEVVHLSNKNEELCQELNE 278
Cdd:COG1196 269 LEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEE 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 279 IdhlaqqlerhkEIVLETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDKENLELLLN 358
Cdd:COG1196 349 A-----------EEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLE 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 359 QLEQEKQRLTEKTENFEIKERELVLEIERMRLEYgialgdkspSRLDAFVKTLEDDRDYYKRELEYLQKmiKRRPSPSRR 438
Cdd:COG1196 418 RLEEELEELEEALAELEEEEEEEEEALEEAAEEE---------AELEEEEEALLELLAELLEEAALLEA--ALAELLEEL 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 439 SPEKSEDLRLITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEqsQSELNRLRREAKHNLVSQSHVGEDGDA 518
Cdd:COG1196 487 AEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYE--AALEAALAAALQNIVVEDDEVAAAAIE 564
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 519 SLADFRRLMAEKESLReklkiQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLI 598
Cdd:COG1196 565 YLKAAKAGRATFLPLD-----KIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRA 639
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 599 QTsddssqLKAELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTISVLD 678
Cdd:COG1196 640 VT------LAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAE 713
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 679 KEKDNLQETVDEKTEKiaclddnlanKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQLDASHTEIAETGRVK 758
Cdd:COG1196 714 EERLEEELEEEALEEQ----------LEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGPVN 783
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 2024408252 759 EIALKENRRLQDDLATMTRENQAVSSE---LEDAIRE-KEEMKTR 799
Cdd:COG1196 784 LLAIEEYEELEERYDFLSEQREDLEEAretLEEAIEEiDRETRER 828
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
210-779 |
2.38e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 58.59 E-value: 2.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 210 QSEVTQLQEKLEISENGKKN----YSKQVEYLQQSNKEL-----------ENRIQDLLDTKKNVTSEVVHLSNKNEELCQ 274
Cdd:pfam15921 291 RSQANSIQSQLEIIQEQARNqnsmYMRQLSDLESTVSQLrselreakrmyEDKIEELEKQLVLANSELTEARTERDQFSQ 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 275 ELNEIDHLAQQL-----ERHKEIVLETA------DKEIGEA------KKEIERKDSEIQDLEETITRLKSElssCRRQNE 337
Cdd:pfam15921 371 ESGNLDDQLQKLladlhKREKELSLEKEqnkrlwDRDTGNSitidhlRRELDDRNMEVQRLEALLKAMKSE---CQGQME 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 338 RLSEELFGKADDKENLELLLNQLEQEK-------QRLTEKTENFEIKERELV-LEIERMRLEYGIALGDKSPSRLDAFVK 409
Cdd:pfam15921 448 RQMAAIQGKNESLEKVSSLTAQLESTKemlrkvvEELTAKKMTLESSERTVSdLTASLQEKERAIEATNAEITKLRSRVD 527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 410 TLEDDRDYYKRELEYLQKMIKRRPSPSRRSPEKSEDLRLITRERDELQSMLDR---------FEKHMIEIQSNVKLLtaE 480
Cdd:pfam15921 528 LKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQhgrtagamqVEKAQLEKEINDRRL--E 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 481 RDRLNILYEQSQSELNRLRREAKHNLVSQSHVGEDGDASLADFRRLMAEKESLREKLKIQQEAANleksKMQHDISVLEN 560
Cdd:pfam15921 606 LQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELN----SLSEDYEVLKR 681
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 561 NiqqFELERCELKSTISILKERIKSLENELKlksskliqtsddssQLKAELCSLHLLNEQLQRTVEDLQHRFSLKKDELQ 640
Cdd:pfam15921 682 N---FRNKSEEMETTTNKLKMQLKSAQSELE--------------QTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQID 744
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 641 SAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTISVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELE 720
Cdd:pfam15921 745 ALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQ 824
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 2024408252 721 sstdqlkDLLSSRDREISSLRRQLDASHTEIAETGRVKEIALKEnRRLQDDLATMTREN 779
Cdd:pfam15921 825 -------DIIQRQEQESVRLKLQHTLDVKELQGPGYTSNSSMKP-RLLQPASFTRTHSN 875
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
817-1072 |
4.18e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.64 E-value: 4.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 817 KEKENQELLEKFRMLHTQAEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQEhmiAHQAYESQISSItk 896
Cdd:COG1196 223 KELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEE---AQAEEYELLAEL-- 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 897 nmSKLEEDIKREHQDKSSVLADLTSVRELCVKLEASKDLLSRQLASKSMDYEKVLGELEDVKSEAELLKKQLSSERLTIQ 976
Cdd:COG1196 298 --ARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 977 NLETLLATSRDKEFQNHLTSHEKDSEIQLLKDKLTLAEGKLSSHNREVSMLRSKVAQLQTDYDVLKRQLTTERFERERAI 1056
Cdd:COG1196 376 EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE 455
|
250
....*....|....*.
gi 2024408252 1057 QEMRRHGLSTSSLRAS 1072
Cdd:COG1196 456 EEEEALLELLAELLEE 471
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
418-800 |
5.15e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 5.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 418 YKRELEYLQKMIKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNR 497
Cdd:TIGR02169 669 SRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSS 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 498 LRREAkhnlvsqshvgEDGDASLADfrrLMAEKESLREKL-KIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTI 576
Cdd:TIGR02169 749 LEQEI-----------ENVKSELKE---LEARIEELEEDLhKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARL 814
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 577 SILKERIKSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRL 656
Cdd:TIGR02169 815 REIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDEL 894
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 657 NQKSTSQDEAVNVLRSTISVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTithlrltlSELESSTDQLKDLLSSRDRE 736
Cdd:TIGR02169 895 EAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEI--------PEEELSLEDVQAELQRVEEE 966
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024408252 737 ISSLRrqlDASHTEIAETgrvkEIALKENRRLQDDLATMTREnqavSSELEDAIREKEEMKTRV 800
Cdd:TIGR02169 967 IRALE---PVNMLAIQEY----EEVLKRLDELKEKRAKLEEE----RKAILERIEEYEKKKREV 1019
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
533-1062 |
6.25e-08 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 57.04 E-value: 6.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 533 LREKLKIQQEAANLEKSKMQHDISVLEN---NIQQFELERCELKSTISILKERIKSL--ENELKLKSSKLIQTSDD--SS 605
Cdd:pfam05483 273 LEEKTKLQDENLKELIEKKDHLTKELEDikmSLQRSMSTQKALEEDLQIATKTICQLteEKEAQMEELNKAKAAHSfvVT 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 606 QLKAELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEivkLEEKIDRLNQKSTSQDEAVNVLRSTISVLDkEKDNLQ 685
Cdd:pfam05483 353 EFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSE---LEEMTKFKNNKEVELEELKKILAEDEKLLD-EKKQFE 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 686 ETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKdllssrdREISSLRRQLDASHTEIAETGRVKEIALKEN 765
Cdd:pfam05483 429 KIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYL-------KEVEDLKTELEKEKLKNIELTAHCDKLLLEN 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 766 RRLQDDLATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESLIaskEKENQELLEKFRMLHTQAEDWEIKAHQA 845
Cdd:pfam05483 502 KELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDEL---ESVREEFIQKGDEVKCKLDKSEENARSI 578
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 846 EGESSSIRLELLSVDTDRRHLRERVELLEKEIQEHMIAHQAYESQISSITKNMSKLEEDIKRehqdkssVLADLTSVREl 925
Cdd:pfam05483 579 EYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNK-------LELELASAKQ- 650
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 926 cvKLEASKDLLSRQLASKSMDYEKVLGELEDVKSEA-ELLKKQLSSERLTIQNLETLLATSRDKEFQNHLTSHEKDSEIQ 1004
Cdd:pfam05483 651 --KFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIAdEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELG 728
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*...
gi 2024408252 1005 LLKDKLTLAEGKLSSHNREVSMLRSKVAQLqtdydvlKRQLTTERFERERAIQEMRRH 1062
Cdd:pfam05483 729 LYKNKEQEQSSAKAALEIELSNIKAELLSL-------KKQLEIEKEEKEKLKMEAKEN 779
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
202-426 |
1.02e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.46 E-value: 1.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 202 ADNRIQELQSEVTQLQEKLEISENGKKNYSKQVEYLQQSnKELENRIQDLLDTKKNVTSEVVHLSNKNEELcQEL----N 277
Cdd:COG4913 608 NRAKLAALEAELAELEEELAEAEERLEALEAELDALQER-REALQRLAEYSWDEIDVASAEREIAELEAEL-ERLdassD 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 278 EIDHLAQQLERHKEIvLETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRR-----QNERLsEELFGKADDKEN 352
Cdd:COG4913 686 DLAALEEQLEELEAE-LEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDlarleLRALL-EERFAAALGDAV 763
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024408252 353 LELLLNQLEQEKQRLTEKTENfeiKERELVLEIERMRLEYGIALGDkspsrLDAFVktleDDRDYYKRELEYLQ 426
Cdd:COG4913 764 ERELRENLEERIDALRARLNR---AEEELERAMRAFNREWPAETAD-----LDADL----ESLPEYLALLDRLE 825
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
196-777 |
5.38e-07 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 54.14 E-value: 5.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 196 ADLLQVADNRIQELQSEVTQLQEKLEISENGKKNYSKQVEylqqsnkELENRIQDLLDTKKNVTSEVVHLSNKNEELCQE 275
Cdd:PRK01156 168 YDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIA-------DDEKSHSITLKEIERLSIEYNNAMDDYNNLKSA 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 276 LNEIDHLAQQLERHKEIVletadKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDKENLEL 355
Cdd:PRK01156 241 LNELSSLEDMKNRYESEI-----KTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILS 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 356 LLNQLEQEKQRLTEKTENFEIKERELVLEIERMRleygialgDKSPSRLDafVKTLEDDRDYYKRELEYLQKMIKR-RPS 434
Cdd:PRK01156 316 NIDAEINKYHAIIKKLSVLQKDYNDYIKKKSRYD--------DLNNQILE--LEGYEMDYNSYLKSIESLKKKIEEySKN 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 435 PSRRSPEKSEDLRLITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAKHNlVSQSHVGE 514
Cdd:PRK01156 386 IERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCP-VCGTTLGE 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 515 DGDASLadfrrlmaekeslreklkiqQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISIL-KERIKSLENELKLK 593
Cdd:PRK01156 465 EKSNHI--------------------INHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLeSEEINKSINEYNKI 524
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 594 SSKLIQTSDD-------------SSQLKAELCSLHLLNEQLQRT--VEDLQHRFSLKKDELQSAQEEIVK-LEEKIDRLN 657
Cdd:PRK01156 525 ESARADLEDIkikinelkdkhdkYEEIKNRYKSLKLEDLDSKRTswLNALAVISLIDIETNRSRSNEIKKqLNDLESRLQ 604
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 658 QKSTSQDEAVNVLRSTISVLDKEKDNLQETVDEKTEKIACLDDnlanKEKTITHLRLTLSELESSTDQLKDL---LSSRD 734
Cdd:PRK01156 605 EIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEK----LRGKIDNYKKQIAEIDSIIPDLKEItsrINDIE 680
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 2024408252 735 REISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTR 777
Cdd:PRK01156 681 DNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINE 723
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
247-795 |
1.30e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.63 E-value: 1.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 247 RIQDLLDTKKNVTSEVVHLSNKNEELCQELNEIDHLAQQLERHkeivLETADKEIGEAKKEIERKDSEIQDLEETITRLK 326
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLE----LEELELELEEAQAEEYELLAELARLEQDIARLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 327 SELSSCRRQNERLSEELfgkADDKENLELLLNQLEQEKQRLTEKTENFEIKERELvLEIERMRLEygialgdkspsRLDA 406
Cdd:COG1196 309 ERRRELEERLEELEEEL---AELEEELEELEEELEELEEELEEAEEELEEAEAEL-AEAEEALLE-----------AEAE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 407 FVKTLEDDRDYYKRELEYLQKMIKRRPSPSRRSPEKSEDLRLITRERDELQsmldrfekhmiEIQSNVKLLTAERDRLNI 486
Cdd:COG1196 374 LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELE-----------ELEEALAELEEEEEEEEE 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 487 LYEQSQSELNRLRREAKHNLVSQSHVGEDGDASLADFRRLMAEKESLREKLKIQQEAANLEKSKMQhDISVLENNIQQFE 566
Cdd:COG1196 443 ALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLE-GVKAALLLAGLRG 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 567 LERcelksTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRtVEDLQHRfSLKKDELQSAQEEI 646
Cdd:COG1196 522 LAG-----AVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGR-ATFLPLD-KIRARAALAAALAR 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 647 VKLEEKIDRLNQKSTSQDEAVNVLRSTISVLDKEKDNLqetvDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQL 726
Cdd:COG1196 595 GAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARL----EAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRREL 670
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2024408252 727 KDLLSSRDREISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEE 795
Cdd:COG1196 671 LAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLE 739
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
409-969 |
1.41e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.76 E-value: 1.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 409 KTLEDDRDYYKRELEYLQKMIKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILY 488
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 489 EQSQSELNRLR---------REAKHNLVSQSHVGEDGDASLADFRRLMAEKESLRE-KLKIQQEAANLEK--SKMQHDIS 556
Cdd:PRK03918 245 KELESLEGSKRkleekirelEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEfYEEYLDELREIEKrlSRLEEEIN 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 557 VLENNIQQFElercELKSTISILKERIKSLENELKlKSSKLIQTSDDSSQLKAELCSLHllNEQLQRTVEDLQHRFSLKK 636
Cdd:PRK03918 325 GIEERIKELE----EKEERLEELKKKLKELEKRLE-ELEERHELYEEAKAKKEELERLK--KRLTGLTPEKLEKELEELE 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 637 DELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTISVLDKEKDNLQEtvDEKTEKIACLDDNLANKEKTITHLRLTL 716
Cdd:PRK03918 398 KAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTE--EHRKELLEEYTAELKRIEKELKEIEEKE 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 717 SELESSTDQLKDLLsSRDREISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEM 796
Cdd:PRK03918 476 RKLRKELRELEKVL-KKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEEL 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 797 KTRVHNYITEVSRFESLIASKEKENQEL-LEKFRMLHTQAEDWEiKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEK 875
Cdd:PRK03918 555 KKKLAELEKKLDELEEELAELLKELEELgFESVEELEERLKELE-PFYNEYLELKDAEKELEREEKELKKLEEELDKAFE 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 876 EIQEHMIAHQAYESQISSITKNMSKLE-EDIKREHQDKSSVLADLTSvrelcvKLEASKDLLsRQLASKSMDYEKVLGEL 954
Cdd:PRK03918 634 ELAETEKRLEELRKELEELEKKYSEEEyEELREEYLELSRELAGLRA------ELEELEKRR-EEIKKTLEKLKEELEER 706
|
570
....*....|....*
gi 2024408252 955 EDVKSEAELLKKQLS 969
Cdd:PRK03918 707 EKAKKELEKLEKALE 721
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
726-1058 |
1.75e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.25 E-value: 1.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 726 LKDLLSSRDREISSLRRQLDA--SHTEIAETGRVKEI--ALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTrvh 801
Cdd:COG1196 191 LEDILGELERQLEPLERQAEKaeRYRELKEELKELEAelLLLKLRELEAELEELEAELEELEAELEELEAELAELEA--- 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 802 nyitEVSRFESLIASKEKENQELLEKFRMLHTQAEDWEikahqaegesssirlellsvdTDRRHLRERVELLEKEIQEhm 881
Cdd:COG1196 268 ----ELEELRLELEELELELEEAQAEEYELLAELARLE---------------------QDIARLEERRRELEERLEE-- 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 882 iahqaYESQISSITKNMSKLEEDIKREHQDKSSVLADLTSVRELCVKLEASKDLLSRQLASKSMDYEKVLGELEDVKSEA 961
Cdd:COG1196 321 -----LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAA 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 962 ELLKKQLSSERLTIQNLETLLATSRDKEFQNHLTSHEKDSEIQLLKDKLTLAEGKLSSHNREVSMLRSKVAQLQTDYDVL 1041
Cdd:COG1196 396 AELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALL 475
|
330
....*....|....*..
gi 2024408252 1042 KRQLTTERFERERAIQE 1058
Cdd:COG1196 476 EAALAELLEELAEAAAR 492
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
619-827 |
1.92e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 1.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 619 EQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTISVLDKEKDNLQETVDEKTEKIACL 698
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 699 DDNLAN------KEKTITHLRLTLS-----ELESSTDQLKDLLSSRDREISSLRRQ---LDASHTEIAETGRVKEIALKE 764
Cdd:COG4942 103 KEELAEllralyRLGRQPPLALLLSpedflDAVRRLQYLKYLAPARREQAEELRADlaeLAALRAELEAERAELEALLAE 182
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024408252 765 NRRLQDDLATMTRENQAVSSELEdaiREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEK 827
Cdd:COG4942 183 LEEERAALEALKAERQKLLARLE---KELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
635-827 |
3.07e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 50.98 E-value: 3.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 635 KKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTISVLDKEKDNLQETVDEKTEKIACLDDNLANkektitHLRl 714
Cdd:COG3883 21 KQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGE------RAR- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 715 TLSELESSTDQLKDLLSSRD-----REISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDA 789
Cdd:COG3883 94 ALYRSGGSVSYLDVLLGSESfsdflDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAEL 173
|
170 180 190
....*....|....*....|....*....|....*...
gi 2024408252 790 IREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEK 827
Cdd:COG3883 174 EAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
529-1053 |
3.62e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.17 E-value: 3.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 529 EKESLREKLKIQQEAANLEKskmqhDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLK 608
Cdd:TIGR04523 35 EKQLEKKLKTIKNELKNKEK-----ELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKIN 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 609 AELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTISVLDKEKDNLQETV 688
Cdd:TIGR04523 110 SEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNI 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 689 DEKTEKIACLDDNLAN---KEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQLDASHTEIAETgrvKEIALKEN 765
Cdd:TIGR04523 190 DKIKNKLLKLELLLSNlkkKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQL---KDEQNKIK 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 766 RRLQDDLATMTREN----------QAVSSELEDAIREKEEMKTR-VHNYITEVSRFESLIASKEKENQELLEKfrmLHTQ 834
Cdd:TIGR04523 267 KQLSEKQKELEQNNkkikelekqlNQLKSEISDLNNQKEQDWNKeLKSELKNQEKKLEEIQNQISQNNKIISQ---LNEQ 343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 835 AEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQEHMIAHQAYESQISSITKNMSKLEEDIKREHQDKSS 914
Cdd:TIGR04523 344 ISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKEL 423
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 915 VLADLTSVRELCVKLEASKDLLSRQLASKSMDYEKVLGELEDVKSEAELLKKQLSSERLTIQNLETLLaTSRDKEFqNHL 994
Cdd:TIGR04523 424 LEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKEL-KSKEKEL-KKL 501
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2024408252 995 TSHEKDSE--IQLLKDKLTLAEGKLSSHNREVSMLRSKVAQLQTDYDVLKRQLTTERFERE 1053
Cdd:TIGR04523 502 NEEKKELEekVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKE 562
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
277-800 |
4.22e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.22 E-value: 4.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 277 NEIDHLAQQLERHKEIvletaDKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLsEELFGKADDKenlELL 356
Cdd:PRK03918 176 RRIERLEKFIKRTENI-----EELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEL-EELKEEIEEL---EKE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 357 LNQLEQEKQRLTEKTENFEIKERELVLEIERMRLEYG----IALGDKSPSRLDAFVKTLEDDRDYYKRELEYLQKMIKRR 432
Cdd:PRK03918 247 LESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKelkeLKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGI 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 433 PSPSRRSPEKSEDLRLITRERDELQSMLDRFEKHMIEIQsNVKLLTAERDRLNilYEQSQSELNRLRREAKHNLVSQSHV 512
Cdd:PRK03918 327 EERIKELEEKEERLEELKKKLKELEKRLEELEERHELYE-EAKAKKEELERLK--KRLTGLTPEKLEKELEELEKAKEEI 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 513 GEDGDASLADFRRLMAEKESLR---EKLKIQQEAANLEKSKMQHDISvlENNIQQFELERCELKSTISILKERIKSLENE 589
Cdd:PRK03918 404 EEEISKITARIGELKKEIKELKkaiEELKKAKGKCPVCGRELTEEHR--KELLEEYTAELKRIEKELKEIEEKERKLRKE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 590 LKLKSSKLIQTSddssqlkaELCSLHLLNEQLQRTVEDLQhrfSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNV 669
Cdd:PRK03918 482 LRELEKVLKKES--------ELIKLKELAEQLKELEEKLK---KYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEK 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 670 LRStisvLDKEKDNLQETVDEKTEKIACLDDNLANKE-KTITHLRLTLSELESSTDQLKDLLSSRDR------EISSLRR 742
Cdd:PRK03918 551 LEE----LKKKLAELEKKLDELEEELAELLKELEELGfESVEELEERLKELEPFYNEYLELKDAEKElereekELKKLEE 626
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024408252 743 QLDASHTEIAETGRV-----KEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRV 800
Cdd:PRK03918 627 ELDKAFEELAETEKRleelrKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRR 689
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
461-1068 |
4.41e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.27 E-value: 4.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 461 DRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELnrlrREAKHNLVSQSHVGEDGDASLADFRRLMAE-KESLREKLki 539
Cdd:pfam15921 74 EHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYL----RQSVIDLQTKLQEMQMERDAMADIRRRESQsQEDLRNQL-- 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 540 QQEAANLEKSKMQHDiSVLENNIQQFELERCELKSTISILKErIKSLENELKLKSSKLIQTSDDSSQL--KAELCSLHLL 617
Cdd:pfam15921 148 QNTVHELEAAKCLKE-DMLEDSNTQIEQLRKMMLSHEGVLQE-IRSILVDFEEASGKKIYEHDSMSTMhfRSLGSAISKI 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 618 NEQLQRTVEDLQHRFSLKKDELQSAQEEI-----VKLEEKIDRLNQKSTSQDEAVNVLRSTISVLDKEKDNLQETVDEKT 692
Cdd:pfam15921 226 LRELDTEISYLKGRIFPVEDQLEALKSESqnkieLLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQ 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 693 EKIaclddnlanKEKTITHLRlTLSELESSTDQLKDLLSSRDR----EISSLRRQLDASHTEIAETGRVKEIALKENRRL 768
Cdd:pfam15921 306 EQA---------RNQNSMYMR-QLSDLESTVSQLRSELREAKRmyedKIEELEKQLVLANSELTEARTERDQFSQESGNL 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 769 QDDL----ATMTRENQAVSSELEDAIR----------EKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKfRMLHTQ 834
Cdd:pfam15921 376 DDQLqkllADLHKREKELSLEKEQNKRlwdrdtgnsiTIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMER-QMAAIQ 454
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 835 AEDWEI-KAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQEHMIAHQAYESQISSITKNMSKLEEDIKREHQDks 913
Cdd:pfam15921 455 GKNESLeKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQE-- 532
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 914 svLADLTSVRELCVKLEASKDLLSRQLASKSMDYEKVLGELED--------------VKSEAELLKKQLSSERLTIQNLE 979
Cdd:pfam15921 533 --LQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENmtqlvgqhgrtagaMQVEKAQLEKEINDRRLELQEFK 610
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 980 TLlatsRDKEFQNHLTSHEKDSEIQLLKDKLTLAEGKLSSHNR-----------EVSMLRSKVAQLQTDYDVLKRQLTTE 1048
Cdd:pfam15921 611 IL----KDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKdikqerdqllnEVKTSRNELNSLSEDYEVLKRNFRNK 686
|
650 660
....*....|....*....|
gi 2024408252 1049 RFERERAIQEMRRHGLSTSS 1068
Cdd:pfam15921 687 SEEMETTTNKLKMQLKSAQS 706
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
587-792 |
6.96e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 49.83 E-value: 6.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 587 ENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLN--------- 657
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERReelgerara 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 658 -QKSTSQDEAVNVLRST---------ISVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLK 727
Cdd:COG3883 95 lYRSGGSVSYLDVLLGSesfsdfldrLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELE 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024408252 728 DLLSSRDREISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIRE 792
Cdd:COG3883 175 AQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 239
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
716-987 |
7.84e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.04 E-value: 7.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 716 LSELESSTDQLKDLLSsrDREISSLRRQLDASHTEIAETGrvKEIALKENRRLQddlATMTREnqavssELEDAIREKEE 795
Cdd:PRK02224 182 LSDQRGSLDQLKAQIE--EKEEKDLHERLNGLESELAELD--EEIERYEEQREQ---ARETRD------EADEVLEEHEE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 796 MKTRVHNYITEVSRFESLIASKEKENQELLEKFRMLHTQAEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEK 875
Cdd:PRK02224 249 RREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRD 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 876 EIQEHMIAHQAYESQISSITKNMSKLEEDIKREHQDKSSVLADLTSVRELCVKLEASKDLLSRQLASKSMDYEKVLGELE 955
Cdd:PRK02224 329 RLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLG 408
|
250 260 270
....*....|....*....|....*....|..
gi 2024408252 956 DVKSEAELLKKQLSSERLTIQNLETLLATSRD 987
Cdd:PRK02224 409 NAEDFLEELREERDELREREAELEATLRTARE 440
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
703-1062 |
8.25e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.06 E-value: 8.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 703 ANKEKTITHLRLTLSELesstDQLKDLLSSRDREISSLRRQldashTEIAEtgRVKEIAlKENRRLQDDLATMT-----R 777
Cdd:TIGR02168 172 ERRKETERKLERTRENL----DRLEDILNELERQLKSLERQ-----AEKAE--RYKELK-AELRELELALLVLRleelrE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 778 ENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESLIASKEKENQELlekfrmlhtQAEDWEIKAHQAEgesssirlell 857
Cdd:TIGR02168 240 ELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEEL---------QKELYALANEISR----------- 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 858 sVDTDRRHLRERVELLEKEIQEHMIAHQAYESQISSITKNMSKLEEDIKREHQDKSSVLADLTSVRELCVKLEASKDLLS 937
Cdd:TIGR02168 300 -LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELE 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 938 RQLASKSMDYEKVLGELEDVKSEAELLKKQLSSERLTIQNLETLLATSRDKEFQNHLtsHEKDSEIQLLKDKLTLAEGKL 1017
Cdd:TIGR02168 379 EQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAEL--KELQAELEELEEELEELQEEL 456
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 2024408252 1018 SSHNREVSMLRSKVAQLQTDYDVLKRQLTTERFeRERAIQEMRRH 1062
Cdd:TIGR02168 457 ERLEEALEELREELEEAEQALDAAERELAQLQA-RLDSLERLQEN 500
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
520-979 |
8.92e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 50.17 E-value: 8.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 520 LADFRRLMAEKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELER-------CELKSTISILKERIKSLeNELKL 592
Cdd:pfam01576 105 IQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERklleeriSEFTSNLAEEEEKAKSL-SKLKN 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 593 KSSKLIQTSDD---------------SSQLKAELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVK-------LE 650
Cdd:pfam01576 184 KHEAMISDLEErlkkeekgrqelekaKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEetaqknnAL 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 651 EKIDRLNQKSTSQDEAVNVLRSTISVLDKEKDNLQETVDE-KTEKIACLDDNLAN------KEKTITHLRLTLSELESST 723
Cdd:pfam01576 264 KKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEAlKTELEDTLDTTAAQqelrskREQEVTELKKALEEETRSH 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 724 D-QLKDLLSSRDREISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTREN--------------QAVSSELED 788
Cdd:pfam01576 344 EaQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKqdsehkrkklegqlQELQARLSE 423
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 789 AIREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKFRMLHTQAEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRE 868
Cdd:pfam01576 424 SERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQE 503
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 869 RVEllekeiqEHMIAHQAYESQISSITKNMSkleeDIKREHQDKSSVLADLTSVRElcvKLEASKDLLSRQLASKSMDYE 948
Cdd:pfam01576 504 QLE-------EEEEAKRNVERQLSTLQAQLS----DMKKKLEEDAGTLEALEEGKK---RLQRELEALTQQLEEKAAAYD 569
|
490 500 510
....*....|....*....|....*....|.
gi 2024408252 949 KVLGELEDVKSEAELLKKQLSSERLTIQNLE 979
Cdd:pfam01576 570 KLEKTKNRLQQELDDLLVDLDHQRQLVSNLE 600
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
543-747 |
9.06e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 9.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 543 AANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQ 622
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 623 RTVEDLQH--------------------------------RFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVL 670
Cdd:COG4942 97 AELEAQKEelaellralyrlgrqpplalllspedfldavrRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024408252 671 RSTISVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTIThlrltlsELESSTDQLKDLLSSRDREISSLRRQLDAS 747
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELA-------ELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
199-693 |
1.10e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 49.63 E-value: 1.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 199 LQVADNRIQELQSEVTQLQEKleiSENGKKNYSKQVEYLQQSNKELENRIQDLLDTKKNVTSEVVHLSNKNEELCQELNE 278
Cdd:TIGR04523 206 LKKKIQKNKSLESQISELKKQ---NNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKK 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 279 IDHLAQQLERHKEIVLETADKE----IGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDKENLE 354
Cdd:TIGR04523 283 IKELEKQLNQLKSEISDLNNQKeqdwNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQ 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 355 LLLNQLEQEKQRLteKTENFEIKERELVLEIERMRLEYGIALGDKSPSRLDAFVKTLEDDRDYYKRELEYLQKMIKRRPS 434
Cdd:TIGR04523 363 RELEEKQNEIEKL--KKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNS 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 435 PSRRSPEKSEDLRLITRE----RDELQSMLDRFEKHMIEIQSNVKLLTAErdrlnilYEQSQSELNRLRREAKhnlvsqs 510
Cdd:TIGR04523 441 EIKDLTNQDSVKELIIKNldntRESLETQLKVLSRSINKIKQNLEQKQKE-------LKSKEKELKKLNEEKK------- 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 511 hvgedgdaslaDFRRLMAEKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQ--FELERCELKSTISILKERIKSLEN 588
Cdd:TIGR04523 507 -----------ELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKddFELKKENLEKEIDEKNKEIEELKQ 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 589 ELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVN 668
Cdd:TIGR04523 576 TQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIK 655
|
490 500
....*....|....*....|....*
gi 2024408252 669 VLRSTISVLDKEKDNLQETVDEKTE 693
Cdd:TIGR04523 656 EIRNKWPEIIKKIKESKTKIDDIIE 680
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
530-879 |
1.17e-05 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 49.44 E-value: 1.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 530 KESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKA 609
Cdd:pfam10174 301 KESELLALQTKLETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKSTLAG 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 610 ELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTISVLDKEKDNLQETVD 689
Cdd:pfam10174 381 EIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEEALSEKERIIERLKEQRE 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 690 ----EKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSS---------------------RDREISSLRRQL 744
Cdd:pfam10174 461 redrERLEELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSlassglkkdsklksleiaveqKKEECSKLENQL 540
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 745 DASHtEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESLIASKEKENQEL 824
Cdd:pfam10174 541 KKAH-NAEEAVRTNPEINDRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAELESLTLRQMKEQNKK 619
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 2024408252 825 LEKFRMLHTQaedwEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQE 879
Cdd:pfam10174 620 VANIKHGQQE----MKKKGAQLLEEARRREDNLADNSQQLQLEELMGALEKTRQE 670
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
195-772 |
1.57e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 49.25 E-value: 1.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 195 IADLLQVADNRIQELQSEVTQLQEKLEISENGKKNYSKQVEYLQQSNKELENRIQDLLDTKKNVTSEVVHLSNKNEELCQ 274
Cdd:TIGR04523 87 LNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKK 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 275 ELNEIDHLAQQLERHKEIVLETADKeIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDKENLE 354
Cdd:TIGR04523 167 QKEELENELNLLEKEKLNIQKNIDK-IKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKT 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 355 LLLNQLEQEKQRLTEKTENFEIKERELVLEIERMrleygialgdkspsrlDAFVKTLEDDRDYYKRELEYL--QKMIKRR 432
Cdd:TIGR04523 246 TEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQN----------------NKKIKELEKQLNQLKSEISDLnnQKEQDWN 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 433 PSPSRRSPEKSEDLRLITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRRE------AKHNL 506
Cdd:TIGR04523 310 KELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKEnqsykqEIKNL 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 507 VSQShvgEDGDASLADFRRLMAEKESL-----REKLKIQQEAANL--EKSKMQHDISVLENNIQQFELERCELKSTISIL 579
Cdd:TIGR04523 390 ESQI---NDLESKIQNQEKLNQQKDEQikklqQEKELLEKEIERLkeTIIKNNSEIKDLTNQDSVKELIIKNLDNTRESL 466
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 580 KERIKSLEN--------------ELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEE 645
Cdd:TIGR04523 467 ETQLKVLSRsinkikqnleqkqkELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDE 546
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 646 IVK---------LEEKIDRLNQKstsqdeaVNVLRSTISVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTL 716
Cdd:TIGR04523 547 LNKddfelkkenLEKEIDEKNKE-------IEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKEL 619
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 2024408252 717 SELESSTDQLKDLLSSRDREISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDL 772
Cdd:TIGR04523 620 EKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKI 675
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
242-1061 |
1.84e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 49.27 E-value: 1.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 242 KELENRIQDLLDTKKNVTS---EVVHLSNKNEELCQELNEIDHLAQQLERHKEIV--LETADKEIGEAKKEIERKDSEIQ 316
Cdd:TIGR00606 186 KALETLRQVRQTQGQKVQEhqmELKYLKQYKEKACEIRDQITSKEAQLESSREIVksYENELDPLKNRLKEIEHNLSKIM 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 317 DLEETITRLKS---ELSSCRRQNERLSEELFGKADDK-----ENLELLLNQLEQEKQRLTEKTENFEIKERELVLEIERM 388
Cdd:TIGR00606 266 KLDNEIKALKSrkkQMEKDNSELELKMEKVFQGTDEQlndlyHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTEL 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 389 RLEYGIALGDKSPSRLDAFVKTLEDDRDYYKRELEYLQK----MIKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRFE 464
Cdd:TIGR00606 346 LVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERgpfsERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQ 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 465 KHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAKHNLVSQSHVGEDGDASLADFRRL-MAEKESLREKLKIQQEA 543
Cdd:TIGR00606 426 EQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELsKAEKNSLTETLKKEVKS 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 544 ANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSskliQTSDDSSQLKAELCSlhllNEQLQR 623
Cdd:TIGR00606 506 LQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKS----RHSDELTSLLGYFPN----KKQLED 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 624 TVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTI------SVLDKEKDNLQETVDEKTEKIAC 697
Cdd:TIGR00606 578 WLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLfdvcgsQDEESDLERLKEEIEKSSKQRAM 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 698 LDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQLDASHTEIAETGrvKEIALKENRRlqddlATMTR 777
Cdd:TIGR00606 658 LAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTE--SELKKKEKRR-----DEMLG 730
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 778 ENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKFRM-------------LHTQAEDWEIKAHQ 844
Cdd:TIGR00606 731 LAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESakvcltdvtimerFQMELKDVERKIAQ 810
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 845 AEGESSSIRLELLSVDTDR---------RHLRERVELLEKEIQEHMIAHQAYESQISSITKNMSKLEEDIKREHQDKSSV 915
Cdd:TIGR00606 811 QAAKLQGSDLDRTVQQVNQekqekqhelDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQL 890
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 916 LADLTSVRELCVKLEASKD-------LLSRQLASKSMDYEKVLGELEDVKSEAELLKKQLSSERLTIQNLETLLATSRDK 988
Cdd:TIGR00606 891 VELSTEVQSLIREIKDAKEqdspletFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDD 970
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024408252 989 EFQnhltshEKDSEIQLLKDKLTLAEGKLSSHNREVSMLRSKVAQLQTDYDVLKRQLTteRFERERAIQEMRR 1061
Cdd:TIGR00606 971 YLK------QKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLT--LRKRENELKEVEE 1035
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
579-785 |
2.15e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 2.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 579 LKERIKSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQ 658
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 659 K---------STSQDEAVNVLRSTISVLDKEK---------DNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELE 720
Cdd:COG4942 105 ElaellralyRLGRQPPLALLLSPEDFLDAVRrlqylkylaPARREQAEELRADLAELAALRAELEAERAELEALLAELE 184
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024408252 721 SSTDQLKDLLSSRDREISSLRRQLDASHTEIAEtgrvkeiALKENRRLQDDLATMTRENQAVSSE 785
Cdd:COG4942 185 EERAALEALKAERQKLLARLEKELAELAAELAE-------LQQEAEELEALIARLEAEAAAAAER 242
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
413-642 |
3.21e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 3.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 413 DDRDYYKRELEYLQKMIKRRPSPSRRSPEK----SEDLRLITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILY 488
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEekalLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 489 EQSQSELNRLRREA-KHNLVSQSHVGEDGDASLADFRRLMAEKESLREklkIQQEAANLEKskmqhDISVLENNIQQFEL 567
Cdd:COG4942 100 EAQKEELAELLRALyRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPA---RREQAEELRA-----DLAELAALRAELEA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024408252 568 ERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSA 642
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
584-1010 |
3.53e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 48.15 E-value: 3.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 584 KSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVedlqhrfslkKDELQSAQEEIVKLEEKIDRLNQKSTSQ 663
Cdd:COG5022 785 RLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTI----------KREKKLRETEEVEFSLKAEVLIQKFGRS 854
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 664 DEAVNVLRSTI--SVLDKEKDNLQETVDEKTEKiacLDDNlankeKTITHLRLTLSELESSTDQLKDLLSSRDREISSLR 741
Cdd:COG5022 855 LKAKKRFSLLKkeTIYLQSAQRVELAERQLQEL---KIDV-----KSISSLKLVNLELESEIIELKKSLSSDLIENLEFK 926
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 742 RQLDASHTEIAETGRVKEIALKE---NRRLQDDLATMTRENQAvSSELEDAIREKEEMKTRVHNYITEVSRFESLIASKE 818
Cdd:COG5022 927 TELIARLKKLLNNIDLEEGPSIEyvkLPELNKLHEVESKLKET-SEEYEDLLKKSTILVREGNKANSELKNFKKELAELS 1005
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 819 KENQELLEKFRML-HTQAEDWEIKAHQAEGES-SSIRLELLSVDTDRRHLRERVELLEKEIQE--------HMIAHQAYE 888
Cdd:COG5022 1006 KQYGALQESTKQLkELPVEVAELQSASKIISSeSTELSILKPLQKLKGLLLLENNQLQARYKAlklrrensLLDDKQLYQ 1085
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 889 SQissITKNMSKLEEDIKREHQDKSSVLadLTSVRELCVKLEASKDLLSRQ---LASKSMDYEKVLGELEDVKSEAELLK 965
Cdd:COG5022 1086 LE---STENLLKTINVKDLEVTNRNLVK--PANVLQFIVAQMIKLNLLQEIskfLSQLVNTLEPVFQKLSVLQLELDGLF 1160
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 2024408252 966 KQLSSERLTiqNLETLLATSRDKEFQNHLT---SHEKDSEIQLLKDKL 1010
Cdd:COG5022 1161 WEANLEALP--SPPPFAALSEKRLYQSALYdekSKLSSSEVNDLKNEL 1206
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
593-1063 |
6.27e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.14 E-value: 6.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 593 KSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVK-LEEKIDRLNQKSTSQDEAVNVLR 671
Cdd:pfam12128 242 EFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDqWKEKRDELNGELSAADAAVAKDR 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 672 STISVLDKEK------------------DNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSE-----LESSTDQLKD 728
Cdd:pfam12128 322 SELEALEDQHgafldadietaaadqeqlPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEqnnrdIAGIKDKLAK 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 729 LLSSRDREI-----------SSLRRQLDASHTEIAETGRVKEIALKENRRLQDDlATMTRE---NQAVSSELEDAIREKE 794
Cdd:pfam12128 402 IREARDRQLavaeddlqaleSELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQ-ATATPElllQLENFDERIERAREEQ 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 795 E---------------MKTRVHNYITEVSRFESLIASKEKENQELLEK--------FRMLHTQAEDW------------- 838
Cdd:pfam12128 481 EaanaeverlqselrqARKRRDQASEALRQASRRLEERQSALDELELQlfpqagtlLHFLRKEAPDWeqsigkvispell 560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 839 -------EIKAHQAEGESS--SIRLELLSVDTDRRH-----LRERVELLEKEIQEHMIAHQAYESQISSITK---NMSKL 901
Cdd:pfam12128 561 hrtdldpEVWDGSVGGELNlyGVKLDLKRIDVPEWAaseeeLRERLDKAEEALQSAREKQAAAEEQLVQANGeleKASRE 640
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 902 EEDIKREHQDkssvlADLTsVRELCVKLEASKDLLSRQLASKSmdyEKVLGELEDVKSEAELLKKQLSSERLTIQnlETL 981
Cdd:pfam12128 641 ETFARTALKN-----ARLD-LRRLFDEKQSEKDKKNKALAERK---DSANERLNSLEAQLKQLDKKHQAWLEEQK--EQK 709
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 982 LATSRDKEFQNHLTSHEKDSEIQLLKDKLTLAEgklSSHNREVSMLRS----KVAQLQTDYDVLKRqLTTERFERERAIQ 1057
Cdd:pfam12128 710 REARTEKQAYWQVVEGALDAQLALLKAAIAARR---SGAKAELKALETwykrDLASLGVDPDVIAK-LKREIRTLERKIE 785
|
....*.
gi 2024408252 1058 EMRRHG 1063
Cdd:pfam12128 786 RIAVRR 791
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
204-350 |
8.24e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 8.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 204 NRIQELQSEVTQLQEKLEISENGKKNYSKQVEYLQ--QSNKELENRIQDLLDTKKNVTSEVVHLSNKNEELCQELNEIDH 281
Cdd:COG4717 95 EELEELEEELEELEAELEELREELEKLEKLLQLLPlyQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAE 174
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2024408252 282 LAQQLERHKEIVLETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDK 350
Cdd:COG4717 175 LQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEE 243
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
270-792 |
1.24e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 1.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 270 EELCQELNEIDHLAQQLERHKEIV-LETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFG-KA 347
Cdd:COG4913 258 RELAERYAAARERLAELEYLRAALrLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGnGG 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 348 DDKENLELLLNQLEQEKQRLTEKTENFEIKERELVLEIERmrleygialgdkSPSRLDAFVKTLEDDRDYYKRELEYLQk 427
Cdd:COG4913 338 DRLEQLEREIERLERELEERERRRARLEALLAALGLPLPA------------SAEEFAALRAEAAALLEALEEELEALE- 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 428 miKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRFEKHMIEIQSN------------------VKLLTAERD------- 482
Cdd:COG4913 405 --EALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDAlaealgldeaelpfvgelIEVRPEEERwrgaier 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 483 -----RLNILYEQSQseLNRLRREAKHNLVSQSHVGEDGDASLADFRRLMAEKESLREKLKIQQ-EAANLEKSKMQHDIS 556
Cdd:COG4913 483 vlggfALTLLVPPEH--YAAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDPDSLAGKLDFKPhPFRAWLEAELGRRFD 560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 557 VLE-NNIQQFELER------CELKS--------------TISIL----KERIKSLENELKLKSSKLIQTSDDSSQLKAEl 611
Cdd:COG4913 561 YVCvDSPEELRRHPraitraGQVKGngtrhekddrrrirSRYVLgfdnRAKLAALEAELAELEEELAEAEERLEALEAE- 639
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 612 csLHLLNEQLQRTVEDLQHRFSLkkDELQSAQEEIVKLEEKIDRLNQkstSQDEaVNVLRSTISVLDKEKDNLQETVDEK 691
Cdd:COG4913 640 --LDALQERREALQRLAEYSWDE--IDVASAEREIAELEAELERLDA---SSDD-LAALEEQLEELEAELEELEEELDEL 711
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 692 TEKIACLDDNLANKEKTITHLRLTLSELEsstdqlkdllssrDREISSLRRQLDASHTEIAETGRVKEIAlkenRRLQDD 771
Cdd:COG4913 712 KGEIGRLEKELEQAEEELDELQDRLEAAE-------------DLARLELRALLEERFAAALGDAVERELR----ENLEER 774
|
570 580
....*....|....*....|.
gi 2024408252 772 LATMTRENQAVSSELEDAIRE 792
Cdd:COG4913 775 IDALRARLNRAEEELERAMRA 795
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
528-725 |
1.39e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.59 E-value: 1.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 528 AEKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLI-------QT 600
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGeraralyRS 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 601 SDDSSQLKAelcslhLLNeqlQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTISVLDKE 680
Cdd:COG3883 99 GGSVSYLDV------LLG---SESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAA 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2024408252 681 KDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQ 725
Cdd:COG3883 170 KAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAA 214
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
28-376 |
1.41e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.26 E-value: 1.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 28 ESLPLVEKLFSDLVHTTESLRSA--KLSAGKIEKECSnyDAIIEPYKTETAKLTRENNELHLEVLKLKEQSD------HH 99
Cdd:pfam15921 458 ESLEKVSSLTAQLESTKEMLRKVveELTAKKMTLESS--ERTVSDLTASLQEKERAIEATNAEITKLRSRVDlklqelQH 535
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 100 IKDLKASLRRAENEAADLRFLNNQYVHKIKLLEKESKAKTEKIQQlQEKNLQAVVQTPGGRKRNIPFRRQRMQidqpvpp 179
Cdd:pfam15921 536 LKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQ-HGRTAGAMQVEKAQLEKEINDRRLELQ------- 607
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 180 savsaypvpqpedpYIADLLQVADNRIQELQSEVTQLQ-EKLEISENGKKNYsKQVEYLQQSNKELENRIQDLLDTKKNV 258
Cdd:pfam15921 608 --------------EFKILKDKKDAKIRELEARVSDLElEKVKLVNAGSERL-RAVKDIKQERDQLLNEVKTSRNELNSL 672
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 259 TSEVVHLS----NKNEELCQELN----EIDHLAQQLERHKEIV--LETAD-----------KEIGEAKKEIERKDSEIQD 317
Cdd:pfam15921 673 SEDYEVLKrnfrNKSEEMETTTNklkmQLKSAQSELEQTRNTLksMEGSDghamkvamgmqKQITAKRGQIDALQSKIQF 752
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 2024408252 318 LEETITRLKSELSSCRRQNERLSEELFGKADDKENLELLLNQLEQEKQRLTEKTENFEI 376
Cdd:pfam15921 753 LEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEV 811
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
530-1061 |
1.66e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 46.05 E-value: 1.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 530 KESLREKLKIQQEAANLEKSKmqHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKA 609
Cdd:PRK01156 152 KKILDEILEINSLERNYDKLK--DVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNN 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 610 ELCSLHLLNEQLQR--TVEDLQHRFSLK----KDELQSAQEEIVKLEEKIDRLNQKSTSqdeAVNVLRSTIsvldKEKDN 683
Cdd:PRK01156 230 AMDDYNNLKSALNElsSLEDMKNRYESEiktaESDLSMELEKNNYYKELEERHMKIIND---PVYKNRNYI----NDYFK 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 684 LQETVDEKTEKIACLDDNLANKEKTIThlrlTLSELESSTDQLKDLLSSRD---REISSLRRQLDASHTEIAETGRVKEI 760
Cdd:PRK01156 303 YKNDIENKKQILSNIDAEINKYHAIIK----KLSVLQKDYNDYIKKKSRYDdlnNQILELEGYEMDYNSYLKSIESLKKK 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 761 ALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKFRMLHTQA----- 835
Cdd:PRK01156 379 IEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSvcpvc 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 836 -------------EDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQEHMIahqAYESQISSITKNMSKLE 902
Cdd:PRK01156 459 gttlgeeksnhiiNHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSI---NEYNKIESARADLEDIK 535
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 903 EDIKR-----------EHQDKSSVLADLTSVRELCVKLEASKDLL--------SRQLASKSMDYEKVLGELE----DVKS 959
Cdd:PRK01156 536 IKINElkdkhdkyeeiKNRYKSLKLEDLDSKRTSWLNALAVISLIdietnrsrSNEIKKQLNDLESRLQEIEigfpDDKS 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 960 ---------------------EAELLKKQLSSERLTIQNLETLLATSRDKE-FQNHLTSHEKDSEiqllkDKLTLAEGKL 1017
Cdd:PRK01156 616 yidksireieneannlnnkynEIQENKILIEKLRGKIDNYKKQIAEIDSIIpDLKEITSRINDIE-----DNLKKSRKAL 690
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 2024408252 1018 SSHNREVSMLRSKVAQLQTDYDVLKRQLTterfERERAIQEMRR 1061
Cdd:PRK01156 691 DDAKANRARLESTIEILRTRINELSDRIN----DINETLESMKK 730
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
660-879 |
1.72e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 1.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 660 STSQDEAVNVLRSTISVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISS 739
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 740 LRRQLDASHTEIAE-------TGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVsrfES 812
Cdd:COG4942 95 LRAELEAQKEELAEllralyrLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL---EA 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024408252 813 LIASKEKENQELLEKFRMLHTQAEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQE 879
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
205-744 |
1.73e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.80 E-value: 1.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 205 RIQELQSEVTQLQEKLEISENGKKNYSKQVEYLQQSNKELENRIQDLLDT-------KKNVTSEVVHLSNKNEELCQEL- 276
Cdd:PRK02224 252 ELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEaglddadAEAVEARREELEDRDEELRDRLe 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 277 ----------NEIDHLAQQLERHKEIVLE------TADKEIGEAKKEIERKDSEIQDLEETItrlkselsscrrqnERLS 340
Cdd:PRK02224 332 ecrvaaqahnEEAESLREDADDLEERAEElreeaaELESELEEAREAVEDRREEIEELEEEI--------------EELR 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 341 EELFGKADDKENLELLLNQLEQEKQRLTEKtenfeIKERELVLEIERMRLEYGIALGDK-------SPSRLDAFVKTLED 413
Cdd:PRK02224 398 ERFGDAPVDLGNAEDFLEELREERDELRER-----EAELEATLRTARERVEEAEALLEAgkcpecgQPVEGSPHVETIEE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 414 DRDyYKRELEYLQKMIKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRFEkhmieiqsnvKLLTAERDRLnilyEQSQS 493
Cdd:PRK02224 473 DRE-RVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLE----------ELIAERRETI----EEKRE 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 494 ELNRLRREAkhnlvsqshvgEDGDASLADFRRLMAEKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFElERCELK 573
Cdd:PRK02224 538 RAEELRERA-----------AELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLA-AIADAE 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 574 STISILKERIKSLENELKLKSSKLIQTSDDSSQLKAELcslhllneqlqrtvedLQHRFSLKKDELQSAQEEIVKLEEKI 653
Cdd:PRK02224 606 DEIERLREKREALAELNDERRERLAEKRERKRELEAEF----------------DEARIEEAREDKERAEEYLEQVEEKL 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 654 DRLNQKSTSqdeavnvLRSTISVLDKEKDNLQETVDEKTEkiaclddnLANKEKTITHLRLTLSELESSTDQLKDLLssR 733
Cdd:PRK02224 670 DELREERDD-------LQAEIGAVENELEELEELRERREA--------LENRVEALEALYDEAEELESMYGDLRAEL--R 732
|
570
....*....|.
gi 2024408252 734 DREISSLRRQL 744
Cdd:PRK02224 733 QRNVETLERML 743
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
617-846 |
1.91e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 45.69 E-value: 1.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 617 LNEQLQRTVEDLqHRFSL----------KKDELQSAQEEIVKLEEKIDRLNQ--------KSTSQDEAVNVLRSTISVLD 678
Cdd:PRK05771 14 LKSYKDEVLEAL-HELGVvhiedlkeelSNERLRKLRSLLTKLSEALDKLRSylpklnplREEKKKVSVKSLEELIKDVE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 679 KEKDNLQETVDEKTEKIAclddNLANKEKTITHLRLTLSELESSTDQLKDLLSSR--DREISSLRRQLDASHTEIAETGR 756
Cdd:PRK05771 93 EELEKIEKEIKELEEEIS----ELENEIKELEQEIERLEPWGNFDLDLSLLLGFKyvSVFVGTVPEDKLEELKLESDVEN 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 757 VKEIALKEN---------RRLQDDLATMTRENQAVSSELED------AIREKEEMKTRVHNYITEVSrfESLIASKEKEN 821
Cdd:PRK05771 169 VEYISTDKGyvyvvvvvlKELSDEVEEELKKLGFERLELEEegtpseLIREIKEELEEIEKERESLL--EELKELAKKYL 246
|
250 260
....*....|....*....|....*
gi 2024408252 822 QELLEKFRMLHTQAEDWEIKAHQAE 846
Cdd:PRK05771 247 EELLALYEYLEIELERAEALSKFLK 271
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
669-800 |
2.32e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 44.57 E-value: 2.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 669 VLRSTISVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQLDASH 748
Cdd:PRK09039 43 FLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELA 122
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 2024408252 749 TEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRV 800
Cdd:PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKI 174
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
571-1054 |
2.55e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.05 E-value: 2.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 571 ELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAELCSLhllnEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLE 650
Cdd:PRK03918 190 NIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEL----EELKEEIEELEKELESLEGSKRKLEEKIRELE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 651 EKIDRLNQKSTSQDEAVNVLRStISVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLL 730
Cdd:PRK03918 266 ERIEELKKEIEELEEKVKELKE-LKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELK 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 731 ssrdREISSLRRQLDASHTEIAETGRVKEIaLKENRRLQDDLATMTRENqaVSSELEDAIREKEEMKTRVHNYITEVSRF 810
Cdd:PRK03918 345 ----KKLKELEKRLEELEERHELYEEAKAK-KEELERLKKRLTGLTPEK--LEKELEELEKAKEEIEEEISKITARIGEL 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 811 ESLIASKEKENQELLEKFRM------LHTQAEDWEIKAHQAEgESSSIRLELLSVDTDRRHLRERVELLEKEI--QEHMI 882
Cdd:PRK03918 418 KKEIKELKKAIEELKKAKGKcpvcgrELTEEHRKELLEEYTA-ELKRIEKELKEIEEKERKLRKELRELEKVLkkESELI 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 883 AHQAYESQISSITKNMSKLE-EDIKREHQDkssvladLTSVRELCVKLEASKDLLSRQLaSKSMDYEKVLGELEDVKSEA 961
Cdd:PRK03918 497 KLKELAEQLKELEEKLKKYNlEELEKKAEE-------YEKLKEKLIKLKGEIKSLKKEL-EKLEELKKKLAELEKKLDEL 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 962 ELLKKQLSSE--RLTIQNLETLLATSRD-KEFQNHLTS--------HEKDSEIQLLKDKLTLAEGKLSSHNREVSMLRSK 1030
Cdd:PRK03918 569 EEELAELLKEleELGFESVEELEERLKElEPFYNEYLElkdaekelEREEKELKKLEEELDKAFEELAETEKRLEELRKE 648
|
490 500
....*....|....*....|....
gi 2024408252 1031 VAQLQTDYDVLKRQLTTERFERER 1054
Cdd:PRK03918 649 LEELEKKYSEEEYEELREEYLELS 672
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
529-728 |
3.12e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 44.62 E-value: 3.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 529 EKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLK 608
Cdd:PHA02562 189 KIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIK 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 609 AELCSLHLLNEQLQ---------RTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEA---VNVLRSTISV 676
Cdd:PHA02562 269 SKIEQFQKVIKMYEkggvcptctQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQskkLLELKNKIST 348
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2024408252 677 LD--------------KEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKD 728
Cdd:PHA02562 349 NKqslitlvdkakkvkAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIVTDLLKD 414
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
517-896 |
3.51e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 3.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 517 DASLADFRRLMAEKESLREKLkiqqEAANLEKSKMQHDISVLENNIQQFEL--ERCELKSTISILKERIKSLENELKL-- 592
Cdd:COG4717 84 EEKEEEYAELQEELEELEEEL----EELEAELEELREELEKLEKLLQLLPLyqELEALEAELAELPERLEELEERLEElr 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 593 -KSSKLIQTSDDSSQLKAELCSLHLLN--------EQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQ 663
Cdd:COG4717 160 eLEEELEELEAELAELQEELEELLEQLslateeelQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAA 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 664 DEA--------VNVLRSTISVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDR 735
Cdd:COG4717 240 ALEerlkearlLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEE 319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 736 EISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTRENQ-------------AVSSELEDAIREKEEMKTRVHN 802
Cdd:COG4717 320 ELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQleeleqeiaallaEAGVEDEEELRAALEQAEEYQE 399
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 803 YITEVSRFESLIASKEKENQELLEKFrmlhtQAEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEK--EIQEH 880
Cdd:COG4717 400 LKEELEELEEQLEELLGELEELLEAL-----DEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEdgELAEL 474
|
410
....*....|....*.
gi 2024408252 881 MIAHQAYESQISSITK 896
Cdd:COG4717 475 LQELEELKAELRELAE 490
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
206-560 |
3.79e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 44.71 E-value: 3.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 206 IQELQSEVTQLQEKLEISENGKKNYSKQVEYLQQsnkELENriQDLLDTKknVTSEVVHLSNKNEELCQELNEidhLAQQ 285
Cdd:pfam05483 445 LQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKT---ELEK--EKLKNIE--LTAHCDKLLLENKELTQEASD---MTLE 514
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 286 LERHKEivletadkEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDKENLELLLNQLEQEKQ 365
Cdd:pfam05483 515 LKKHQE--------DIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKE 586
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 366 RLTEKTENFEIKERELV---------LEIERMRLEYGIALGDKSPSRLDAFVKTLEDDRDYYKRELEYL----QKMIKRR 432
Cdd:pfam05483 587 KQMKILENKCNNLKKQIenknknieeLHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIidnyQKEIEDK 666
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 433 PSPSRRSPEKSEDLRLITRERDELQSMLDRFEKHmiEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAKhnlvSQSHV 512
Cdd:pfam05483 667 KISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQH--KIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQ----EQSSA 740
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 2024408252 513 GEDGDASLADFRrlmAEKESLREKLKIQQEAANLEKSKMQHDISVLEN 560
Cdd:pfam05483 741 KAALEIELSNIK---AELLSLKKQLEIEKEEKEKLKMEAKENTAILKD 785
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
191-343 |
4.07e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 44.46 E-value: 4.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 191 EDPYIADLLQVADNRIQELQSEVTQLQEKLeisengkKNYSKQVEYLQQSNKELENRIQDLLDTkknvtsevvhlsnkNE 270
Cdd:COG2433 386 IEKELPEEEPEAEREKEHEERELTEEEEEI-------RRLEEQVERLEAEVEELEAELEEKDER--------------IE 444
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024408252 271 ELCQELNEIdhlaqQLERHKEIvletadkeigeakkeieRKDSEIQDLEETITRLKSELSSCRRQNERLSEEL 343
Cdd:COG2433 445 RLERELSEA-----RSEERREI-----------------RKDREISRLDREIERLERELEEERERIEELKRKL 495
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
334-1060 |
4.31e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.58 E-value: 4.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 334 RQNERLSEELFGKADDKENLELLLNQLEQEKQRLTEKTENFEIKERELVLEIERMRLEYGIALGDKspsrLDAFVKTLED 413
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDY----LKLNEERIDL 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 414 DRDYYKRELEYLQKMIKRRPSPSRRSPEKSEDLRLITRerdELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQS 493
Cdd:pfam02463 242 LQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEK---EKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 494 ELNRLRR------EAKHNLVSQSHVGEDGDASLADFRRLMAEKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFEL 567
Cdd:pfam02463 319 SEKEKKKaekelkKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELE 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 568 ERCELKSTISILKERIKSLENELKLKSSKL------IQTSDDSSQLKAELCSLHL--LNEQLQRTVEDLQHRFSLKKDEL 639
Cdd:pfam02463 399 LKSEEEKEAQLLLELARQLEDLLKEEKKEEleileeEEESIELKQGKLTEEKEELekQELKLLKDELELKKSEDLLKETQ 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 640 QSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTISVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSEL 719
Cdd:pfam02463 479 LVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATAD 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 720 ESSTDQLKDLLSSRDREISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTR 799
Cdd:pfam02463 559 EVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLK 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 800 VHNYITE-----VSRFESLIASKEKENQELLEKFRMLHTQAEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLE 874
Cdd:pfam02463 639 ESAKAKEsglrkGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLE 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 875 KEIQEHMIAHQAYEsqISSITKNMSKLEEDIKREHQDKSSVLADLTSVRELCVKLEASKDLLSR-QLASKSMDYEKVLGE 953
Cdd:pfam02463 719 AEELLADRVQEAQD--KINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEReKTEKLKVEEEKEEKL 796
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 954 LEDVKSEAELLKKQLSSERLTIQNLETLLATSRDKEFQNHLtSHEKDSEIQLLKDKLTLAEGKLSSHNREVSMLRSKVAQ 1033
Cdd:pfam02463 797 KAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEE-LALELKEEQKLEKLAEEELERLEEEITKEELLQELLLK 875
|
730 740
....*....|....*....|....*..
gi 2024408252 1034 LQTDYDVLKRQLTTERFERERAIQEMR 1060
Cdd:pfam02463 876 EEELEEQKLKDELESKEEKEKEEKKEL 902
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
546-803 |
4.34e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 4.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 546 LEKSKMQHDISVLENNIQQFElercELKSTISILKERIKSLEnELKLKSSKLIQTSDDSSQLKAELcslhllneqLQRTV 625
Cdd:COG4913 218 LEEPDTFEAADALVEHFDDLE----RAHEALEDAREQIELLE-PIRELAERYAAARERLAELEYLR---------AALRL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 626 EDLQHRFSLKKDELQSAQEEIVKLEEKIDRLnqkstsqdeavnvlrstisvlDKEKDNLQETVDEKTEKIACLD-DNLAN 704
Cdd:COG4913 284 WFAQRRLELLEAELEELRAELARLEAELERL---------------------EARLDALREELDELEAQIRGNGgDRLEQ 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 705 KEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQLDASHTEIAETgrvKEIALKENRRLQDDLATMTRENQAVSS 784
Cdd:COG4913 343 LEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAAL---LEALEEELEALEEALAEAEAALRDLRR 419
|
250
....*....|....*....
gi 2024408252 785 ELEDAIREKEEMKTRVHNY 803
Cdd:COG4913 420 ELRELEAEIASLERRKSNI 438
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
464-802 |
4.56e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.34 E-value: 4.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 464 EKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAKHNLVSQSHVgEDGDASLADFRRLMAEKEslREKLKIQQEA 543
Cdd:pfam17380 281 QKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEM-DRQAAIYAEQERMAMERE--RELERIRQEE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 544 ANLEKSKMQHDisvlenniqqfelercELKSTISILKErIKSLENELKLKSSKLIQTSDDSSQLKaelcslhLLNEQLQR 623
Cdd:pfam17380 358 RKRELERIRQE----------------EIAMEISRMRE-LERLQMERQQKNERVRQELEAARKVK-------ILEEERQR 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 624 TV-EDLQHRFSLKKDELQSAQEEIVKLEEK----IDRLNQKSTSQDEAVNVLRSTISVLDKEKDNLQEtvdEKTEKIACL 698
Cdd:pfam17380 414 KIqQQKVEMEQIRAEQEEARQREVRRLEEErareMERVRLEEQERQQQVERLRQQEEERKRKKLELEK---EKRDRKRAE 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 699 DDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQldashtEIAETGRVKEIALKENRRLQDDLATMTRE 778
Cdd:pfam17380 491 EQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERR------REAEEERRKQQEMEERRRIQEQMRKATEE 564
|
330 340
....*....|....*....|....
gi 2024408252 779 NqavsSELEDAIREKEEMKTRVHN 802
Cdd:pfam17380 565 R----SRLEAMEREREMMRQIVES 584
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
198-1058 |
5.89e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.19 E-value: 5.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 198 LLQVADNRIQELQSEVTQLQEKLEISENGKKNYskqvEYLQQSNKELENRIQDLLDTKKNVTSEVVHLSNKNEELcqELN 277
Cdd:pfam02463 178 LIEETENLAELIIDLEELKLQELKLKEQAKKAL----EYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRD--EQE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 278 EIDHLAQQLERHKEIvLETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDKENLELLL 357
Cdd:pfam02463 252 EIESSKQEIEKEEEK-LAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKEL 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 358 NQLEQEKQRLTEKTENFEIKERELVLEIERMRLEYGIALGDKspSRLDAFVKTLEDDRDYYKRELEYLQKMIKRRPSPSR 437
Cdd:pfam02463 331 KKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLE--EELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQ 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 438 RSPEKSEDLRLITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAKHNLVSQSHVGEDGD 517
Cdd:pfam02463 409 LLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLEL 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 518 ASLADFRRLMAEKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKL 597
Cdd:pfam02463 489 LLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVR 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 598 IQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTISVL 677
Cdd:pfam02463 569 ALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGL 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 678 DKEKDNLQETVDEKTEKIACLDDNLANKEKTIThLRLTLSELESSTDQLKDLLSSRDREISSLRRQLDASHTEIAETGRV 757
Cdd:pfam02463 649 RKGVSLEEGLAEKSEVKASLSELTKELLEIQEL-QEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRV 727
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 758 KEIALKENRRLQddlatmtRENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKFRMLHTQAED 837
Cdd:pfam02463 728 QEAQDKINEELK-------LLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQE 800
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 838 WEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQEHMIAHQAYESQISSITKNMSKLEEDIKREHQDKSSVLA 917
Cdd:pfam02463 801 EELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELE 880
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 918 DLTSVRELCVKLEASKDLLSRQLASKSMDYEKVLGELEDVKSEAELLKKQLSSERltiQNLETLLATSRDKEFQNHLTSH 997
Cdd:pfam02463 881 EQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEE---EPEELLLEEADEKEKEENNKEE 957
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2024408252 998 EKDSEIQLLKDKLTLAEGKLsshnrevsMLRSKVAQLQTDYDVLKRQLTTERFERERAIQE 1058
Cdd:pfam02463 958 EEERNKRLLLAKEELGKVNL--------MAIEEFEEKEERYNKDELEKERLEEEKKKLIRA 1010
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
548-909 |
6.64e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.88 E-value: 6.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 548 KSKMQHDISVLENNIQQFELERCELKSTISILKERIKSL-------ENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQ 620
Cdd:TIGR00606 690 EAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMlglapgrQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEE 769
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 621 LQRTVEDLQHRFSLKKDEL------QSAQEEIVKLEEKIDRLNQKSTSQDeavnvLRSTISVLDKEKDNLQETVDEKTEK 694
Cdd:TIGR00606 770 QETLLGTIMPEEESAKVCLtdvtimERFQMELKDVERKIAQQAAKLQGSD-----LDRTVQQVNQEKQEKQHELDTVVSK 844
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 695 IACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRD----------REISSLRRQLDASHTEIAETGRVKEIALKE 764
Cdd:TIGR00606 845 IELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQqfeeqlvelsTEVQSLIREIKDAKEQDSPLETFLEKDQQE 924
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 765 NRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVSrfESLIASKEKENQELLEKFRMLHTQAEDWE--IKA 842
Cdd:TIGR00606 925 KEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGK--DDYLKQKETELNTVNAQLEECEKHQEKINedMRL 1002
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 843 HQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQEHMiaHQAYESQISSITKNMSKLEED---IKREH 909
Cdd:TIGR00606 1003 MRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHL--KEMGQMQVLQMKQEHQKLEENidlIKRNH 1070
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
202-328 |
1.33e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.84 E-value: 1.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 202 ADNRIQELQSEVTQLQEKLEISENgkkNYSKQVEYLQQSNKELENRIQDLLDTKKNVTSEVVHLSNKNEELCQELNEIDH 281
Cdd:PRK12704 73 FEKELRERRNELQKLEKRLLQKEE---NLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISG 149
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 2024408252 282 LAQqlERHKEIVLETADKEI------------GEAKKEIERKDSEIqdLEETITRLKSE 328
Cdd:PRK12704 150 LTA--EEAKEILLEKVEEEArheaavlikeieEEAKEEADKKAKEI--LAQAIQRCAAD 204
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
447-660 |
1.34e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 447 RLITRERDELQSMLDRFEKHMIEIQSNVklltaerdrlnilyEQSQSELNRLRReaKHNLVSQSHVGEDGDASLADFRRL 526
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKEL--------------EEAEAALEEFRQ--KNGLVDLSEEAKLLLQQLSELESQ 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 527 MAEKESLREKLKIQQEAANLEKSKMQHDISVLENNiqqfelercelkSTISILKERIKSLENELKLKSSKLIQTSDDSSQ 606
Cdd:COG3206 228 LAEARAELAEAEARLAALRAQLGSGPDALPELLQS------------PVIQQLRAQLAELEAELAELSARYTPNHPDVIA 295
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2024408252 607 LKAELCSL-HLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKS 660
Cdd:COG3206 296 LRAQIAALrAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELE 350
|
|
| DUF724 |
pfam05266 |
Protein of unknown function (DUF724); This family contains several uncharacterized proteins ... |
244-320 |
1.54e-03 |
|
Protein of unknown function (DUF724); This family contains several uncharacterized proteins found in Arabidopsis thaliana and other plants. This region is often found associated with Agenet domains and may contain coiled-coil.
Pssm-ID: 428400 [Multi-domain] Cd Length: 188 Bit Score: 40.72 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 244 LENRIQDLLDTKKNVTSEVVHLSNKNEELCQELNEIDHLAQQLERH---KEIVLETADKEIGEAKKEIERKDSEIQDLEE 320
Cdd:pfam05266 100 LKDRQTKLLEELKKLEKKIAEEESEKRKLEEEIDELEKKILELERQlalAKEKKEAADKEIARLKSEAEKLEQEIQDVEL 179
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
512-743 |
1.64e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 1.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 512 VGEDGDASLADFRRLM-AEKESLREKLKIQQ----EAANLEKSKMQHDISVLENNIQQFELERCELKstISILKERIKSL 586
Cdd:COG4913 223 TFEAADALVEHFDDLErAHEALEDAREQIELlepiRELAERYAAARERLAELEYLRAALRLWFAQRR--LELLEAELEEL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 587 ENELKlksskliQTSDDSSQLKAELcslhllnEQLQRTVEDLQH-RFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDE 665
Cdd:COG4913 301 RAELA-------RLEAELERLEARL-------DALREELDELEAqIRGNGGDRLEQLEREIERLERELEERERRRARLEA 366
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2024408252 666 AVNVLRSTISVLDKEKDNLQETVDEKTEKIACLDDNLANKektithlrltLSELESSTDQLKDLLSSRDREISSLRRQ 743
Cdd:COG4913 367 LLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEA----------LAEAEAALRDLRRELRELEAEIASLERR 434
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
529-656 |
1.75e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.54 E-value: 1.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 529 EKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLK 608
Cdd:COG2433 389 ELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARSEERREIRKDREIS 468
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2024408252 609 AelcslhllneqLQRTVEDLQHrfslkkdELQSAQEEIVKLEEKIDRL 656
Cdd:COG2433 469 R-----------LDREIERLER-------ELEEERERIEELKRKLERL 498
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
195-430 |
2.01e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.22 E-value: 2.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 195 IADLLQVADNRIQELQSEVTQLQEKLEISENGKKNYSKQ---VEYLQQSNKELENriqdlLDTKKNVTSEVVHLSNKNEE 271
Cdd:PRK05771 84 LEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEierLEPWGNFDLDLSL-----LLGFKYVSVFVGTVPEDKLE 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 272 LCQELNEIDHL--AQQLERHKEIVLETADKEIGEAKKEIERKDSEIQDLE------ETITRLKSELSSCRRQNERLSEEL 343
Cdd:PRK05771 159 ELKLESDVENVeyISTDKGYVYVVVVVLKELSDEVEEELKKLGFERLELEeegtpsELIREIKEELEEIEKERESLLEEL 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 344 fgkaddkenlelllnqleqekQRLTEKTENFEIKERELvLEIERMRLEygialgdkspsrldAFVKTLEDDRDYY----- 418
Cdd:PRK05771 239 ---------------------KELAKKYLEELLALYEY-LEIELERAE--------------ALSKFLKTDKTFAiegwv 282
|
250
....*....|...
gi 2024408252 419 -KRELEYLQKMIK 430
Cdd:PRK05771 283 pEDRVKKLKELID 295
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
513-760 |
2.06e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 2.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 513 GEDGDASLADFRRLMAEKESLREKLKIQQEAANLEKSKMQhDISVLENNIQQFELERCELKStisiLKERIKSLENELKl 592
Cdd:COG4913 605 GFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQ-ERREALQRLAEYSWDEIDVAS----AEREIAELEAELE- 678
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 593 kssKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKST----------- 661
Cdd:COG4913 679 ---RLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARlelralleerf 755
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 662 -------SQDEAVNVLRSTISVLDKEKDNLQETVDEKTEK--------IACLDDNLANKEKTITHL-RLTLSELESSTDQ 725
Cdd:COG4913 756 aaalgdaVERELRENLEERIDALRARLNRAEEELERAMRAfnrewpaeTADLDADLESLPEYLALLdRLEEDGLPEYEER 835
|
250 260 270
....*....|....*....|....*....|....*.
gi 2024408252 726 LKDLLSSR-DREISSLRRQLDASHTEIAEtgRVKEI 760
Cdd:COG4913 836 FKELLNENsIEFVADLLSKLRRAIREIKE--RIDPL 869
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
451-667 |
2.15e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 2.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 451 RERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAKhnlvsqshvgedgdASLADFRRLMAEK 530
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELA--------------ALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 531 ESLREKLKIQQEA-----ANLEKSKMQHDISVLENN------------IQQFELERCELKSTISILKERIKSLENELKLK 593
Cdd:COG4942 93 AELRAELEAQKEElaellRALYRLGRQPPLALLLSPedfldavrrlqyLKYLAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024408252 594 SSKLIQTSDDSSQLKAELCSLHllnEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAV 667
Cdd:COG4942 173 RAELEALLAELEEERAALEALK---AERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
444-690 |
2.42e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 42.20 E-value: 2.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 444 EDLRLITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQsqseLNRLRREAKHNLVSQSHVgedgdasladF 523
Cdd:PLN02939 156 EDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQ----LEKLRNELLIRGATEGLC----------V 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 524 RRLMAEKESLREKLKIQQEAANLEKSKMQHdISVLENNIQQFELERCELKSTISILKER-IKSLENELKLKSSKL----- 597
Cdd:PLN02939 222 HSLSKELDVLKEENMLLKDDIQFLKAELIE-VAETEERVFKLEKERSLLDASLRELESKfIVAQEDVSKLSPLQYdcwwe 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 598 ----IQTSDDSSQLKAELCSLHL-LNEQLQRTVEDLQ--------HRFSLKKDELQsaQEEIVKLEEKIDRLNQKSTSQ- 663
Cdd:PLN02939 301 kvenLQDLLDRATNQVEKAALVLdQNQDLRDKVDKLEaslkeanvSKFSSYKVELL--QQKLKLLEERLQASDHEIHSYi 378
|
250 260 270
....*....|....*....|....*....|..
gi 2024408252 664 ---DEAVNVLRSTISVLDKE--KDNLQETVDE 690
Cdd:PLN02939 379 qlyQESIKEFQDTLSKLKEEskKRSLEHPADD 410
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
227-487 |
2.51e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.84 E-value: 2.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 227 KKNYSKQVEYLQQSN--------KELEN-RIQDLLDTKKNVTSEVVHL---SNKNEELCQELNEIDHL-AQQLERHKEIV 293
Cdd:PRK05771 15 KSYKDEVLEALHELGvvhiedlkEELSNeRLRKLRSLLTKLSEALDKLrsyLPKLNPLREEKKKVSVKsLEELIKDVEEE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 294 LETADKEIGEAKKEIERKDSEIQDLEETITRLK--SELS---SCRRQNERLSEELFGKADDKENlelllnqleqekqrlt 368
Cdd:PRK05771 95 LEKIEKEIKELEEEISELENEIKELEQEIERLEpwGNFDldlSLLLGFKYVSVFVGTVPEDKLE---------------- 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 369 ektENFEIKERELVLEIERMRLEYGIALgdkspsrldAFVKTLEDDRDYYKRELEYLQKMIKRRPSPSRRSPEKSEDLRL 448
Cdd:PRK05771 159 ---ELKLESDVENVEYISTDKGYVYVVV---------VVLKELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEE 226
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 2024408252 449 ITRERDELQSMLDRF-EKHMIEIQSNVKLLTAERDRLNIL 487
Cdd:PRK05771 227 IEKERESLLEELKELaKKYLEELLALYEYLEIELERAEAL 266
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
888-1061 |
2.79e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.54 E-value: 2.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 888 ESQISSITKNMSKLEEDIKREHQDKSSVLADLtsvRELCVKLEASKDLLSRQLASKSMDYEKVLGELEDVKSEAELLKKQ 967
Cdd:PHA02562 194 QQQIKTYNKNIEEQRKKNGENIARKQNKYDEL---VEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSK 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 968 LSserlTIQNLETLL--------ATSRDKEFQNHLTS-HEKDSEIQLLKDKLTLAEGKLSSHNREVSMLRSKVAQLQTDY 1038
Cdd:PHA02562 271 IE----QFQKVIKMYekggvcptCTQQISEGPDRITKiKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKI 346
|
170 180
....*....|....*....|...
gi 2024408252 1039 DVLKRQLTTERFERERAIQEMRR 1061
Cdd:PHA02562 347 STNKQSLITLVDKAKKVKAAIEE 369
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
190-343 |
3.14e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.59 E-value: 3.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 190 PEDPYIADLLQVADNRIQELQSEVTQLQEKLEISENGKKNYSKQVEYLQQSNKELENRIQDLLDTKKNVTSEVVHLSNKN 269
Cdd:TIGR02169 784 LEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKK 863
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024408252 270 EELCQELNEIDHLAQQLE-RHKEIvletaDKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEEL 343
Cdd:TIGR02169 864 EELEEELEELEAALRDLEsRLGDL-----KKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEEL 933
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
562-735 |
3.37e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.29 E-value: 3.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 562 IQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRFSLKKD--EL 639
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNnkEY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 640 QSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTISVLDKEKDNLQETVDEKTEKiacLDDNLANKEKTITHLRLTLSEL 719
Cdd:COG1579 92 EALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAE---LDEELAELEAELEELEAEREEL 168
|
170
....*....|....*.
gi 2024408252 720 ESSTDqlKDLLSSRDR 735
Cdd:COG1579 169 AAKIP--PELLALYER 182
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
199-391 |
3.49e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 3.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 199 LQVADNRIQELQSEVTQLQEKLEISENGKKNYSKQVEYLQQSNKELENRIQDLLDTKKNVTSEVVHLSNKNEELCQELNE 278
Cdd:COG4942 29 LEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 279 IDHLAQQLERHKEIVLETADKEIGEA--------------KKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELF 344
Cdd:COG4942 109 LLRALYRLGRQPPLALLLSPEDFLDAvrrlqylkylaparREQAEELRADLAELAALRAELEAERAELEALLAELEEERA 188
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2024408252 345 GKADDKENLELLLNQLEQEKQRLTEKTENFEIKERELVLEIERMRLE 391
Cdd:COG4942 189 ALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
519-785 |
4.98e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 41.04 E-value: 4.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 519 SLADFRRLMAEKESLREKLKIQQ----EAANLEKSKMQHDISVlENNIQQFELERCELKSTISILKERIKSLENELKLKS 594
Cdd:PLN02939 154 ALEDLEKILTEKEALQGKINILEmrlsETDARIKLAAQEKIHV-EILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLK 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 595 SKLIQTSDDSSQLKAELCSLHLLNEQ----------LQRTVEDLQHRFSlkkdelqSAQEEIVKLEE-KIDRLNQKSTS- 662
Cdd:PLN02939 233 EENMLLKDDIQFLKAELIEVAETEERvfklekerslLDASLRELESKFI-------VAQEDVSKLSPlQYDCWWEKVENl 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 663 ---QDEAVNVLRSTISVLDKEKDnLQETVDEKTEKIaclddnlanKEKTITHLRLTLSELesstdqlkdllssRDREISS 739
Cdd:PLN02939 306 qdlLDRATNQVEKAALVLDQNQD-LRDKVDKLEASL---------KEANVSKFSSYKVEL-------------LQQKLKL 362
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 2024408252 740 LRRQLDASHTEIAETGRVKEIALKEnrrLQDDLATMTRENQAVSSE 785
Cdd:PLN02939 363 LEERLQASDHEIHSYIQLYQESIKE---FQDTLSKLKEESKKRSLE 405
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
785-1038 |
5.35e-03 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 40.83 E-value: 5.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 785 ELEDAIREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKFRMLHTQAEDWEI---KAHQAEGESSSIRLELLSVDT 861
Cdd:pfam05622 1 DLSEAQEEKDELAQRCHELDQQVSLLQEEKNSLQQENKKLQERLDQLESGDDSGTPggkKYLLLQKQLEQLQEENFRLET 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 862 DRRHLRERVELLEKEIQEhmIAHQAYESQISSITKNMSKLEEDIKREHQDKSSVL-ADLTSVRElcvKLEASKDLLS--R 938
Cdd:pfam05622 81 ARDDYRIKCEELEKEVLE--LQHRNEELTSLAEEAQALKDEMDILRESSDKVKKLeATVETYKK---KLEDLGDLRRqvK 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 939 QLASKSMDYEKVLGELEDVKSEAELLKKQLSSERLTIQNLETLLATSRDK----EFQNHlTSHEKDSEIQLLKDKLTLAE 1014
Cdd:pfam05622 156 LLEERNAEYMQRTLQLEEELKKANALRGQLETYKRQVQELHGKLSEESKKadklEFEYK-KLEEKLEALQKEKERLIIER 234
|
250 260
....*....|....*....|....
gi 2024408252 1015 GKLSSHNREVsmlrsKVAQLQTDY 1038
Cdd:pfam05622 235 DTLRETNEEL-----RCAQLQQAE 253
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
650-795 |
5.59e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 5.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 650 EEKIDRLNQKSTSQDEAVNVLRSTISVLDKEKDNLQEtvdektekIACLDDNLANKEKTITHLRLTLSELESSTDQLKDL 729
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQE--------RREALQRLAEYSWDEIDVASAEREIAELEAELERL 680
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2024408252 730 LSSRDrEISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEE 795
Cdd:COG4913 681 DASSD-DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARL 745
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
204-329 |
6.51e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.52 E-value: 6.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 204 NRIQELQSEVTQLQEKLEISENGKKNYSKQVEYLQQSNKELENRIQDLLDTKKNVTSEVVHLSNkNEELCQELNEIDHLA 283
Cdd:COG1579 24 HRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRN-NKEYEALQKEIESLK 102
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 2024408252 284 QQLERHKEIVLEtADKEIGEAKKEIERKDSEIQDLEETITRLKSEL 329
Cdd:COG1579 103 RRISDLEDEILE-LMERIEELEEELAELEAELAELEAELEEKKAEL 147
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
204-656 |
7.54e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.43 E-value: 7.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 204 NRIQELQSEVTQLQEKLEISENGKKNYSKQVEYLQQSNKELENRIQDLLDTKknvtSEVVHLSNKNEELCQELNEIDHLA 283
Cdd:PRK03918 286 KELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKE----ERLEELKKKLKELEKRLEELEERH 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 284 QQLERHKEIVLE-------TADKEIGEAKKEI---ERKDSEIQDLEETITRLKSELSSCRRQNERLSEEL---------F 344
Cdd:PRK03918 362 ELYEEAKAKKEElerlkkrLTGLTPEKLEKELeelEKAKEEIEEEISKITARIGELKKEIKELKKAIEELkkakgkcpvC 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 345 GKADDKENLELLLNQLEQEKQRLTEKTENFEIKERELVLEIERMRLEYgialgdKSPSRLDAFVKTLEddrdyykrELEY 424
Cdd:PRK03918 442 GRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVL------KKESELIKLKELAE--------QLKE 507
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 425 LQKmiKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRFEKHMIEIqsnvKLLTAERDRLNILYEQSQSELNRLRREakh 504
Cdd:PRK03918 508 LEE--KLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKL----EELKKKLAELEKKLDELEEELAELLKE--- 578
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 505 nlvsqshVGEDGDASLADFRRLMAEKESLREKLkIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIK 584
Cdd:PRK03918 579 -------LEELGFESVEELEERLKELEPFYNEY-LELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELE 650
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024408252 585 SL-----ENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRfslkKDELQSAQEEIVKLEEKIDRL 656
Cdd:PRK03918 651 ELekkysEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEE----LEEREKAKKELEKLEKALERV 723
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
237-665 |
7.93e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 40.34 E-value: 7.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 237 LQQSNKELENRIQdLLDTKKNVTSEVVHLSNKNEELCQELNEIDHLAQQLERHKEIVLETADkEIGEAKKEIERKDSEIQ 316
Cdd:TIGR00618 461 LQESAQSLKEREQ-QLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDID-NPGPLTRRMQRGEQTYA 538
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 317 DLEETITRLKSELSSCRRQNERLSEELFGKADDKENLELLLNQLEQEKQRLTEKTENFEiKERELVLEIERMRLEYGIAL 396
Cdd:TIGR00618 539 QLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQ-DLTEKLSEAEDMLACEQHAL 617
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 397 GDKSPSRLDAFVKTLEDDRDYYKRELEYLQKMIKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRFEKHMIEIQSNVKL 476
Cdd:TIGR00618 618 LRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKE 697
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 477 LTAERDRLNILYEQSQSELNRLRREAKHNLVSQ-SHVGEDGDASLADFRRLMAEKESLREKLKIQQEAANLEK------- 548
Cdd:TIGR00618 698 MLAQCQTLLRELETHIEEYDREFNEIENASSSLgSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVtaalqtg 777
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408252 549 SKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAEL-CSLHLLNEQLQRTVED 627
Cdd:TIGR00618 778 AELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKsATLGEITHQLLKYEEC 857
|
410 420 430
....*....|....*....|....*....|....*...
gi 2024408252 628 LQhrfslKKDELQSAQEEIVKLEEKIDRLNQKSTSQDE 665
Cdd:TIGR00618 858 SK-----QLAQLTQEQAKIIQLSDKLNGINQIKIQFDG 890
|
|
| |
