|
Name |
Accession |
Description |
Interval |
E-value |
| CENP-F_N |
pfam10481 |
Cenp-F N-terminal domain; Mitosin or centromere-associated protein-F (Cenp-F) is found bound ... |
1-307 |
4.55e-140 |
|
Cenp-F N-terminal domain; Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal par to f the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein.
Pssm-ID: 463106 [Multi-domain] Cd Length: 304 Bit Score: 439.64 E-value: 4.55e-140
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1 MSWALEEWKEGLPTRALQKIQELEGQLDKLKKERQQRQFQLETLEAALQKQKQKVENEKTEGANLKRENQSLMEICENLE 80
Cdd:pfam10481 1 MSWAVEEWKEGLPTKALQKIQELESQLDKLKKERQQKQFQLESLEAALQKQKQKVENEKNEGSALKRENQSLMESCDNLE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 81 KTKQKISHELQVKESQVNFQEGQLNSSKKQIEKLEQELKRCKSELERSQQAAQSADVSLNSCLTPQKIFATPLTPSQYYS 160
Cdd:pfam10481 81 KSRQKISHDLQVKESQVNFLEGQLNSSKKQIEKLEQELKRYKSELERSQQALLAGDVSLQPCSTPQKSFATPLTPSQRHN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 161 GSKYEDLKEKYNKEVEERKRLEAEVKALQAKKASQTIPQSTMNHRDIARHQASSSVFSWQQEKTPSRLSSNTLKTPVRRD 240
Cdd:pfam10481 161 DSKYEELQEKYNKEVEERKRLEAELKVLQVKKTNQTLPQSTVSHRDIARHQASSSVFPWQQEKTPSRQSSDAQETPLKRG 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 528980992 241 FSASHFSGEQEVTPSRSTLqigKTDANSSFCDNSSNSHLLDQLKAQNQELRSKMSELELRLQGQEKE 307
Cdd:pfam10481 241 FTASHFLWEHEETPSKRSQ---RSSSNSSLQSNSSSSQLMDQLKAQNQELRSRVSELELRLQAQEKD 304
|
|
| CENP-F_leu_zip |
pfam10473 |
Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, ... |
2276-2415 |
4.14e-41 |
|
Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance.
Pssm-ID: 463102 [Multi-domain] Cd Length: 140 Bit Score: 148.98 E-value: 4.14e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2276 DKKKQLQILEKLKESEHQADFLKDTVENLERELKLSGENQEHVTLEAEKSKAEVETLKATVEKMDQNLRGLQLDLVNIRS 2355
Cdd:pfam10473 1 DEKKQLHVLEKLKESERKADSLKDKVENLERELEMSEENQELAILEAENSKAEVETLKAEIEEMAQNLRDLELDLVTLRS 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2356 EKEDLTKELQKEQSRVSELETLNSSFENLLREKEQEKVQMKEESKAAVEMLQTQLKELSE 2415
Cdd:pfam10473 81 EKENLTKELQKKQERVSELESLNSSLENLLEEKEQEKVQMKEESKTAVEMLQTQLKELNE 140
|
|
| CENP-F_leu_zip |
pfam10473 |
Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, ... |
2458-2597 |
2.15e-40 |
|
Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance.
Pssm-ID: 463102 [Multi-domain] Cd Length: 140 Bit Score: 147.06 E-value: 2.15e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2458 DKKQQLHILEKLKESEHQADFLKDTVENLERELKLSGENQEHVTLEAEKSKAEVETLKATVEEMDQNLRGLQLDLVNIRS 2537
Cdd:pfam10473 1 DEKKQLHVLEKLKESERKADSLKDKVENLERELEMSEENQELAILEAENSKAEVETLKAEIEEMAQNLRDLELDLVTLRS 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2538 DKEDLTKELQKEQSRVSELETLNSSFENLLREKEQEKVQMKEESKAAVEMLQKELEELNE 2597
Cdd:pfam10473 81 EKENLTKELQKKQERVSELESLNSSLENLLEEKEQEKVQMKEESKTAVEMLQTQLKELNE 140
|
|
| CENP-F_leu_zip |
pfam10473 |
Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, ... |
2094-2233 |
3.54e-39 |
|
Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance.
Pssm-ID: 463102 [Multi-domain] Cd Length: 140 Bit Score: 143.59 E-value: 3.54e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2094 DEKKQLHVSEKLKESERRNDSLQDKVETLERELQMAEENQELVILDAENCKAEVETLKTQIELMTERLKDLELDLVTIRS 2173
Cdd:pfam10473 1 DEKKQLHVLEKLKESERKADSLKDKVENLERELEMSEENQELAILEAENSKAEVETLKAEIEEMAQNLRDLELDLVTLRS 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2174 EKENLLKQLQEKQGQASELDTLLSSLKNLLEEKEREKIQTKEEAKSAVEMLQTQLRELTE 2233
Cdd:pfam10473 81 EKENLTKELQKKQERVSELESLNSSLENLLEEKEQEKVQMKEESKTAVEMLQTQLKELNE 140
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2083-2917 |
3.52e-26 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 119.01 E-value: 3.52e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2083 GIEKLRVRIEADEKKQLHVSEKLKESERRNDSLQDKVETLERELQMAEENQELvildaencKAEVETLktQIELMTERLK 2162
Cdd:TIGR02168 166 GISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKEL--------KAELREL--ELALLVLRLE 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2163 DLeldlvtiRSEKENLLKQLQEKQGQASELDTLLSSLKNLLEEKEREKiqtkEEAKSAVEMLQTQLRELTEEIAALcddq 2242
Cdd:TIGR02168 236 EL-------REELEELQEELKEAEEELEELTAELQELEEKLEELRLEV----SELEEEIEELQKELYALANEISRL---- 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2243 etwkveEQSLDSPAQEVQQLRNNIEKLKVHLDIDKKKQLQILEKLKESEHQADFLKDTVENLERELKLSGENQEHVTLEA 2322
Cdd:TIGR02168 301 ------EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRL 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2323 EKSKAEVETLKATVEKMDQNLRGLQLDLVNIRSEKEDLTKELQKEQSRVSELETLNSSFE-NLLREKEQEKVQMKEESKA 2401
Cdd:TIGR02168 375 EELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAElKELQAELEELEEELEELQE 454
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2402 AVEMLQTQLKELSEEVAILCVDQETWKVEEQSLDSPLEEIQQLRNNIGKLkvclDADKKQQLHILEKLKESEHQADFLKD 2481
Cdd:TIGR02168 455 ELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGF----SEGVKALLKNQSGLSGILGVLSELIS 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2482 TVENLER--ELKLSGENQEHVTLEAEKSKAEVETLK---------------------ATVEEMDQNLRGLQLDLVNIRSD 2538
Cdd:TIGR02168 531 VDEGYEAaiEAALGGRLQAVVVENLNAAKKAIAFLKqnelgrvtflpldsikgteiqGNDREILKNIEGFLGVAKDLVKF 610
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2539 KEDLTKELQKEQSRVSELETLNSSFENLLREKEQEK-------------VQMKEESKAAVEML--QKELEELNEKMAALG 2603
Cdd:TIGR02168 611 DPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRivtldgdlvrpggVITGGSAKTNSSILerRREIEELEEKIEELE 690
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2604 NDQETRKVKEQSLSSQVDSLEHEKAQLLQDLDDAKSNYMILQSSVNDLIQEVEDGKQKLEKKDEEISILKSQTRDQEQLV 2683
Cdd:TIGR02168 691 EKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERL 770
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2684 SKLSQMEGEQ-QLWKKQKADLENLMVELEQKIQVLQSKNDALQDTLEALQNSSRNLEKELELTKLEKMSFVEKVNTMTVK 2762
Cdd:TIGR02168 771 EEAEEELAEAeAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEEL 850
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2763 ETELQKEIHAViqktvalkEEFSGEKNRLMEELNLMLEEVKSSKGQLKELMLENSELKKSLDCVHKDRMEEQGKM---RG 2839
Cdd:TIGR02168 851 SEDIESLAAEI--------EELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELeelRE 922
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 528980992 2840 EIAEYQLRLQEAENKHQALLLDTNKQHEMEIQTYREKLTSKEECLSSQKVEIDLLKSSKEELNNSLKATTEILEELKK 2917
Cdd:TIGR02168 923 KLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKE 1000
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1920-2679 |
5.64e-25 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 114.77 E-value: 5.64e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1920 LEAVQTEKlYLEKDNENKQtvitcLEEGLSV--VTSERDQLRGELDTLSKENQELDQMSEKMKEKIRELESHQSECLHLQ 1997
Cdd:TIGR02168 207 RQAEKAER-YKELKAELRE-----LELALLVlrLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1998 EWLQSLEKDSQALSLVRSELENQIEQLNKEKDSLVWESESLQTKLSESEHEKLAITKALEAALMEKGEVAVRLSSTQEEV 2077
Cdd:TIGR02168 281 EEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2078 HQLRKGIEKLRVRIEADEKKQLHVSEKLKESERRNDSLQDKVETLERELQMAEENQE------------LVILDAENCKA 2145
Cdd:TIGR02168 361 EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRErlqqeieellkkLEEAELKELQA 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2146 EVETLKTQIELMTERLKDLELDLVTIRSEKENLLKQLQEKQGQASELDTLLSSLKNLLEEKER----------------- 2208
Cdd:TIGR02168 441 ELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGfsegvkallknqsglsg 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2209 ------EKIQTKEEAKSAVEmlqTQLRELTEeiAALCDDQETWKVEEQSL-------------------DSPAQEVQQLR 2263
Cdd:TIGR02168 521 ilgvlsELISVDEGYEAAIE---AALGGRLQ--AVVVENLNAAKKAIAFLkqnelgrvtflpldsikgtEIQGNDREILK 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2264 NNIEKLKVHLDIDK-KKQLQI------------------LEKLKESEHQADFLKDTVENLERELKLSG--ENQEHVTL-- 2320
Cdd:TIGR02168 596 NIEGFLGVAKDLVKfDPKLRKalsyllggvlvvddldnaLELAKKLRPGYRIVTLDGDLVRPGGVITGgsAKTNSSILer 675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2321 --EAEKSKAEVETLKATVEKMDQNLRGLQLDLVNIRSEKEDLTKELQKEQSRVSELETLNSSFENLLREKEQEKVQMKEE 2398
Cdd:TIGR02168 676 rrEIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE 755
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2399 SKAAVEMLQTQLKELSEEVAILCVDQETWKVEEQSLDSPLEEIQQLRNNIGKLKVCLDADKKQQLHILEKLKESEHQADF 2478
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAA 835
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2479 LKDTVENLERELKLSGENQEHVTLEAEKSKAEVETLKATVEEMDQNLRGLQLDLVNIRSDKEDLTKELQKEQSRVSELet 2558
Cdd:TIGR02168 836 TERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSEL-- 913
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2559 lnssfENLLREKEQEKVQMKEESKAAVEMLQKELEELNEK----MAALGNDQETRKVKEQSLSSQVDSLEHEKAQL---- 2630
Cdd:TIGR02168 914 -----RRELEELREKLAQLELRLEGLEVRIDNLQERLSEEysltLEEAEALENKIEDDEEEARRRLKRLENKIKELgpvn 988
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|..
gi 528980992 2631 ---LQDLDDAKSNYMILQSSVNDLIQEVEDGKQKLEKKDEEISILKSQTRDQ 2679
Cdd:TIGR02168 989 laaIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQ 1040
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2013-2803 |
8.72e-24 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 110.92 E-value: 8.72e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2013 VRSELENQIEQLNKEKDSLVwesESLQTKLSESEHEKLAITKALEAALMEKGEVAVRLSSTQEEVHQLRKGIEKLRVRIE 2092
Cdd:TIGR02168 194 ILNELERQLKSLERQAEKAE---RYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2093 ADEKKQLHVSEKLKESERRNDSLQDKVETLERELQMAEENQELVILDAENCKAEVETLKTQIELMTERLKDLELDLVTIR 2172
Cdd:TIGR02168 271 ELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2173 SEKENLLKQLQEKQGQASELDTLLSSLKNLLEEKEREKIQTKEEAKSavemLQTQLRELTEEIAALCDDQETWKVEEQSL 2252
Cdd:TIGR02168 351 EELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIAS----LNNEIERLEARLERLEDRRERLQQEIEEL 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2253 DSPAQEVQqlrnnieklkvhldidKKKQLQILEKLKESEHQADFLKDTVENLERELKLSGENQEHVTLEAEKSKAEVETL 2332
Cdd:TIGR02168 427 LKKLEEAE----------------LKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQAR 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2333 KATVEKMDQNLRGLQLDLVNIRSEKEDLTKELQKEQSRVSELETLNSSFENLLREKEQEKVQmkEESKAAVEMLQTQLKE 2412
Cdd:TIGR02168 491 LDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQAVVV--ENLNAAKKAIAFLKQN 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2413 LSEEVAILCVDQETwkvEEQSLDSPLEEIQQLRNNIGKLKVCLDADKKqqlhiLEKLKESEHQADFLKDTVENLERELKL 2492
Cdd:TIGR02168 569 ELGRVTFLPLDSIK---GTEIQGNDREILKNIEGFLGVAKDLVKFDPK-----LRKALSYLLGGVLVVDDLDNALELAKK 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2493 SGENQEHVTLEAE--------------------KSKAEVETLKATVEEMDQNLRGLQLDLVNIRSDKEDLTKELQKEQSR 2552
Cdd:TIGR02168 641 LRPGYRIVTLDGDlvrpggvitggsaktnssilERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKE 720
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2553 VSELETLNSSFENLLREKEQEKVQMKEEskaaVEMLQKELEELNEKMAALGNDQETRKVKEQSLSSQVDSLEHEKAQLLQ 2632
Cdd:TIGR02168 721 LEELSRQISALRKDLARLEAEVEQLEER----IAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKE 796
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2633 DLDDAKSNYMILQSSVNDLIQEVEDGKQKLEKKDEEISilkSQTRDQEQLVSKLSQMEGEQQLWKKQKADLENLMVELEQ 2712
Cdd:TIGR02168 797 ELKALREALDELRAELTLLNEEAANLRERLESLERRIA---ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELES 873
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2713 KIQVLQSKNDALQDTLEALQNSSRNLEKELEltKLEKmsfveKVNTMTVKETELQKEIHAVIQKTVALKEEFSGEKNRLM 2792
Cdd:TIGR02168 874 ELEALLNERASLEEALALLRSELEELSEELR--ELES-----KRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS 946
|
810
....*....|.
gi 528980992 2793 EELNLMLEEVK 2803
Cdd:TIGR02168 947 EEYSLTLEEAE 957
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2019-2815 |
1.83e-23 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 109.76 E-value: 1.83e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2019 NQIEQLNKEKDSLVWESESLQTKLSESEHEKLAITKALEAALMEKGEVAVRLSSTQEEVHQLRKGIEKLRVRIEADEKKQ 2098
Cdd:TIGR02168 232 LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2099 LHVSEKLKESERRNDSLQDKVETLERELQMAEENQELVILDAENCKAEVETLKTQIELMTERLKDLELDLVTIRSEKENL 2178
Cdd:TIGR02168 312 ANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQL 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2179 LKQLQEKQGQASELDTLLSSLKnllEEKEREKIQTKEEAKSAVEM-LQTQLRELTEEIAALCDDQETWKVEEQSLDSPAQ 2257
Cdd:TIGR02168 392 ELQIASLNNEIERLEARLERLE---DRRERLQQEIEELLKKLEEAeLKELQAELEELEEELEELQEELERLEEALEELRE 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2258 EVQQLRnnieklkvhldidkkkqlQILEKLKESEHQADFLKDTVENLERELKLSGENQEHVTLEAEKSKAEVETLKATVE 2337
Cdd:TIGR02168 469 ELEEAE------------------QALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELIS 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2338 -------KMDQNLRGLQLDLVNIRSEKEDLTKELQKEQS--RVSELEtLNSSFENLLREKEQEKVQMKEESKAAVEMLQT 2408
Cdd:TIGR02168 531 vdegyeaAIEAALGGRLQAVVVENLNAAKKAIAFLKQNElgRVTFLP-LDSIKGTEIQGNDREILKNIEGFLGVAKDLVK 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2409 QLKELSEEVA-----ILCVDqetwkveeqSLDSPLEEIQQLRNN----------IGKLKVCLDADKKQQLHILEKLKEse 2473
Cdd:TIGR02168 610 FDPKLRKALSyllggVLVVD---------DLDNALELAKKLRPGyrivtldgdlVRPGGVITGGSAKTNSSILERRRE-- 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2474 hqadflkdtVENLERELKLSGEnqehvtlEAEKSKAEVETLKATVEEMDQNLRGLQLDLVNIRSDKEDLTKELQKEQSRV 2553
Cdd:TIGR02168 679 ---------IEELEEKIEELEE-------KIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV 742
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2554 SELETLNSSFENLLREKEQEkvqmKEESKAAVEMLQKELEELNEKMAALGNDQETRKVKEQSLSSQVDSLEHEKAQLLQD 2633
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAE----IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEE 818
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2634 LDDAKSNYMILQSSVNDLIQEVEDGKQKLEKKDEEISILKSQTRD--------QEQLVSKLSQMEGEQQLWKKQKADLEN 2705
Cdd:TIGR02168 819 AANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEEleelieelESELEALLNERASLEEALALLRSELEE 898
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2706 LMV----------ELEQKIQVLQSKNDALQDTLEALQNSSRNLEKEL-ELTKLEKMSFVEKVNTMTVKETELQKEIHAVI 2774
Cdd:TIGR02168 899 LSEelreleskrsELRRELEELREKLAQLELRLEGLEVRIDNLQERLsEEYSLTLEEAEALENKIEDDEEEARRRLKRLE 978
|
810 820 830 840
....*....|....*....|....*....|....*....|....*...
gi 528980992 2775 QKTVALK-------EEFSGEKNRLmEELNLMLEEVKSSKGQLKELMLE 2815
Cdd:TIGR02168 979 NKIKELGpvnlaaiEEYEELKERY-DFLTAQKEDLTEAKETLEEAIEE 1025
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2010-2632 |
3.28e-21 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 102.32 E-value: 3.28e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2010 LSLVRSELENQIEQLNKEKDslvweseslQTK----LSESEHEKLAitkalEAALMEKGEVAVRLSSTQEEVHQLRKGIE 2085
Cdd:COG1196 191 LEDILGELERQLEPLERQAE---------KAEryreLKEELKELEA-----ELLLLKLRELEAELEELEAELEELEAELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2086 KLRVRIEADEKKQLHVSEKLKESERRNDSLQDKVETLERELQMAEENQELVILDAENCKAEVETLKTQIELMTERLKDLE 2165
Cdd:COG1196 257 ELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELE 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2166 LDLVTIRSEKENLLKQLQEKQGQASEldtllssLKNLLEEKEREKIQTKEEAKSAVEMLQTQLRELTEEIAALCDDQETW 2245
Cdd:COG1196 337 EELEELEEELEEAEEELEEAEAELAE-------AEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAE 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2246 KVEEQSLDSPAQEVQQLRNNIEKLKVHLDIDKKKQLQILEKLKESEHQADFLKDTVENLERELKLSGENQEHVTLEAEKS 2325
Cdd:COG1196 410 EALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2326 KAEVETLKATVEKMDQNLRGLQLDLVNIrsEKEDLTKELQKEQSRVSELET-----LNSSFENLLREKEQEKVQMKEESK 2400
Cdd:COG1196 490 AARLLLLLEAEADYEGFLEGVKAALLLA--GLRGLAGAVAVLIGVEAAYEAaleaaLAAALQNIVVEDDEVAAAAIEYLK 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2401 AAVEMLQTQLKELSEEVAILCVDQETWKVEEQ------SLDSPLEEIQQLRNNIGKLKVCLDADKKQQLHILEKLKESEH 2474
Cdd:COG1196 568 AAKAGRATFLPLDKIRARAALAAALARGAIGAavdlvaSDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLR 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2475 QADFLKDTVENLERELKLSGENQEHVTLEAEKSKAEVETLKATVEEMDQNLRGLQLDLVNIRSDKEDLTKELQKEQSRVS 2554
Cdd:COG1196 648 EVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALE 727
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2555 ELETLNSSFENLLREKEQ----EKVQMKEESKAAVEMLQKELEELNEKMAALGN-----DQETRKVKE--QSLSSQVDSL 2623
Cdd:COG1196 728 EQLEAEREELLEELLEEEelleEEALEELPEPPDLEELERELERLEREIEALGPvnllaIEEYEELEEryDFLSEQREDL 807
|
....*....
gi 528980992 2624 EHEKAQLLQ 2632
Cdd:COG1196 808 EEARETLEE 816
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1773-2632 |
6.56e-21 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 101.67 E-value: 6.56e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1773 LKVKETSNENLRLLHGIEERDQKVENLLNEIK----------ELDSKFHLLEVQLTTKIEACVALEkiVEELKKEKLDLN 1842
Cdd:TIGR02168 168 SKYKERRKETERKLERTRENLDRLEDILNELErqlkslerqaEKAERYKELKAELRELELALLVLR--LEELREELEELQ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1843 EKLESfschNQREESSggLTSNLEMVTSKfpHEGIEDDVAKVtdnwREKCLQVENELQRIQSEKDSMEHHALSAEASLEA 1922
Cdd:TIGR02168 246 EELKE----AEEELEE--LTAELQELEEK--LEELRLEVSEL----EEEIEELQKELYALANEISRLEQQKQILRERLAN 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1923 VQTEKLYLEKDNENKQTVITCLEEGLSVVTSERDQLRGELDTLSKENQELDQMSEKMKEKIRELESHQSEclhLQEWLQS 2002
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLET---LRSKVAQ 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2003 LEKDSQALSLVRSELENQIEQLNKEKDSLVWESESLQTKLSESE----HEKLAITKALEAALMEKGEVAVR--------- 2069
Cdd:TIGR02168 391 LELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAElkelQAELEELEEELEELQEELERLEEaleelreel 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2070 ------LSSTQEEVHQLRKGIEKLRVRIEADEKKQLHVSEKLKESERRND---SLQDKVETLER-----ELQMAEENQEL 2135
Cdd:TIGR02168 471 eeaeqaLDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGilgVLSELISVDEGyeaaiEAALGGRLQAV 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2136 VILDAENCKAEVETLKtqiELMTERLKDLELDLV---TIRSEKENLLKQLQEKQGQASELDTLLSSLKNLLeekerekiQ 2212
Cdd:TIGR02168 551 VVENLNAAKKAIAFLK---QNELGRVTFLPLDSIkgtEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAL--------S 619
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2213 TKEEAKSAVEMLQT---QLRELTEEIAALCDDQETWK---VEEQSLDSPAQEVQQLRNNIEKLkvhldidKKKQLQILEK 2286
Cdd:TIGR02168 620 YLLGGVLVVDDLDNaleLAKKLRPGYRIVTLDGDLVRpggVITGGSAKTNSSILERRREIEEL-------EEKIEELEEK 692
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2287 LKESEHQADFLKDTVENLERELKLSGENQEHVTLEAEKSKAEVETLKATVEKMDQNLRGLQLDLVNIRSEKEDLTKELQK 2366
Cdd:TIGR02168 693 IAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEE 772
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2367 EQSRVSELETlnssfenlLREKEQEKVqmkEESKAAVEMLQTQLKELSEEVAILcvdqetwkveEQSLDSPLEEIQQLRN 2446
Cdd:TIGR02168 773 AEEELAEAEA--------EIEELEAQI---EQLKEELKALREALDELRAELTLL----------NEEAANLRERLESLER 831
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2447 NIGKLKVCLDADKKQQLHILEKLKESEHQADFLKDTVENLERELKLSGENQEHVTLEAEKSKAEVETLKATVEEMDQNLR 2526
Cdd:TIGR02168 832 RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRS 911
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2527 GLQLDLVNIRSDKEDLTKELQKEQSRVSEL-ETLNSSFENLLREKEQEKVQMKEESKAAvemlQKELEELNEKMAALGN- 2604
Cdd:TIGR02168 912 ELRRELEELREKLAQLELRLEGLEVRIDNLqERLSEEYSLTLEEAEALENKIEDDEEEA----RRRLKRLENKIKELGPv 987
|
890 900 910
....*....|....*....|....*....|....
gi 528980992 2605 ----DQETRKVKE--QSLSSQVDSLEHEKAQLLQ 2632
Cdd:TIGR02168 988 nlaaIEEYEELKEryDFLTAQKEDLTEAKETLEE 1021
|
|
| CENP-F_C_Rb_bdg |
pfam10490 |
Rb-binding domain of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, ... |
3117-3158 |
3.51e-20 |
|
Rb-binding domain of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway. This domain is at the very C-terminus of the C-terminal coiled-coil, and is one of the key Rb-binding domains.
Pssm-ID: 463111 Cd Length: 47 Bit Score: 85.96 E-value: 3.51e-20
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 528980992 3117 EDAEFEPEGLPEVVKKGFADIPTGKTSPYILRRTTMATRTSP 3158
Cdd:pfam10490 6 DDEEFEPEGLPEVVQKGFADIPSGEVSPYILRRTTLQLRCSP 47
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1998-2858 |
7.17e-20 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 98.22 E-value: 7.17e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1998 EWLQSLEKDSQALSLVRSELENQIEQLNKEKDSLVwESESLQTKLSESEHEKLAitKALEAALMEKGEVAVRLSSTQEEV 2077
Cdd:TIGR02169 177 EELEEVEENIERLDLIIDEKRQQLERLRREREKAE-RYQALLKEKREYEGYELL--KEKEALERQKEAIERQLASLEEEL 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2078 HQLRKGIEKLRVRIEADEKKQLHVSEKLKE-SERRNDSLQDKVETLERELqmaeenqelvildaENCKAEVETLKTQIEL 2156
Cdd:TIGR02169 254 EKLTEEISELEKRLEEIEQLLEELNKKIKDlGEEEQLRVKEKIGELEAEI--------------ASLERSIAEKERELED 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2157 MTERLKDLELDLVTIRSEKENLLKQLQEKQGQaseldtllsslknlleekerekiqtKEEAKSAVEMLQTQLRELTEEIA 2236
Cdd:TIGR02169 320 AEERLAKLEAEIDKLLAEIEELEREIEEERKR-------------------------RDKLTEEYAELKEELEDLRAELE 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2237 ALCDDQETWKveeqsldspaQEVQQLRNNIEKLKVHLDIDKKKQLQILEKLKESEHQADFLKDTVENLERELKLSGENQE 2316
Cdd:TIGR02169 375 EVDKEFAETR----------DELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKE 444
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2317 HVTLEAEKSKAEVETLKATVEKMDQNLRGLQLDLVNIRSEKEDLTKEL---QKEQSRVSELETLNSSFENLLREKEQ--- 2390
Cdd:TIGR02169 445 DKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELaeaEAQARASEERVRGGRAVEEVLKASIQgvh 524
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2391 ----EKVQMKEESKAAVEM-----LQTQLKElSEEVAILCVDQETWKVEEQSLDSPLEEIQQLRNNIGKLKvcldadKKQ 2461
Cdd:TIGR02169 525 gtvaQLGSVGERYATAIEVaagnrLNNVVVE-DDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDLSILS------EDG 597
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2462 QLHILEKLKESEHQ-----ADFLKDT--VENLERELKLSGENQeHVTLEA---EKSKAevetlkatveeMDQNLRGLQLD 2531
Cdd:TIGR02169 598 VIGFAVDLVEFDPKyepafKYVFGDTlvVEDIEAARRLMGKYR-MVTLEGelfEKSGA-----------MTGGSRAPRGG 665
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2532 LVNIRSDKEdltkELQKEQSRVSELETLNSSFENLLREKEQ---EKVQMKEESKAAVEMLQKELEELNEKMAALGNDQET 2608
Cdd:TIGR02169 666 ILFSRSEPA----ELQRLRERLEGLKRELSSLQSELRRIENrldELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEE 741
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2609 RKVKEQSLSSQVDSLEHEKAQLLQDLDDAKSNYMILQSSVNDL-----IQEVEDGKQKLEKKDEEISILKSQTRDQEQLV 2683
Cdd:TIGR02169 742 LEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLearlsHSRIPEIQAELSKLEEEVSRIEARLREIEQKL 821
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2684 SKLSQ----MEGEQQLWKKQKADLENLMVELEQKIQVLQSKNDALQDTLEALQNSSRNLEKELEltKLEKmsfvekvntm 2759
Cdd:TIGR02169 822 NRLTLekeyLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLG--DLKK---------- 889
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2760 tvKETELQKEIHAVIQKTVALKEEFSgEKNRLMEELNLMLEEVK---SSKGQLKELMLENSELKKSLDCVHKDRMEEQGK 2836
Cdd:TIGR02169 890 --ERDELEAQLRELERKIEELEAQIE-KKRKRLSELKAKLEALEeelSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEE 966
|
890 900 910
....*....|....*....|....*....|..
gi 528980992 2837 MRG----------EIAEYQLRLQEAENKHQAL 2858
Cdd:TIGR02169 967 IRAlepvnmlaiqEYEEVLKRLDELKEKRAKL 998
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1944-2523 |
1.49e-19 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 96.93 E-value: 1.49e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1944 LEEGLSVVTSERDQLRGELDTLSKENQELDQMSEKMKEKIREL----ESHQSECLHLQEWLQSLEKDSQALSLVRSELEN 2019
Cdd:COG1196 237 LEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELelelEEAQAEEYELLAELARLEQDIARLEERRRELEE 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2020 QIEQLNKEKDSLVWESESLQTKLSESEHEKLAITKALEAALMEKGEVAVRLSSTQEEVHQLRKGIEKLRVRIEADEKKQL 2099
Cdd:COG1196 317 RLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAA 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2100 HVSEKLKESERRNDSLQDKVETLERELQMAEENQELVILDAENCKAEVETLKTQIELMTERLKDLELDLVTIRSEKENLL 2179
Cdd:COG1196 397 ELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLE 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2180 KQLQEKQGQASELDTLLSSLKNLLEEKEREKIQTKEEAKSAvemlqtQLRELTEEIAALCDDQET-WKVEEQSLDspAQE 2258
Cdd:COG1196 477 AALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLA------GLRGLAGAVAVLIGVEAAyEAALEAALA--AAL 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2259 VQQLRNNIEKLKVHLDIDKKKQL-----QILEKLKESEHQADFLKDTVENLERELKLSGENQEHVTLEAEKSKAEVETLK 2333
Cdd:COG1196 549 QNIVVEDDEVAAAAIEYLKAAKAgratfLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLV 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2334 ATVEKMDQNL-RGLQLDLVNIRSEKEDLTKELQKEQSRVSELETLNSSFENLLREKEQEKVQMKEESKAAVEMLQTQLKE 2412
Cdd:COG1196 629 AARLEAALRRaVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERE 708
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2413 LSEEVAILCVDQETWKVEEQSLDSPLEEIQQLrnnigklkvcLDADKKQQLHILEKLKESEHQADFLKDTVENLERELKL 2492
Cdd:COG1196 709 LAEAEEERLEEELEEEALEEQLEAEREELLEE----------LLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 528980992 2493 SG------------ENQEHVTLEAEKS--KAEVETLKATVEEMDQ 2523
Cdd:COG1196 779 LGpvnllaieeyeeLEERYDFLSEQREdlEEARETLEEAIEEIDR 823
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1788-2713 |
2.19e-19 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 96.68 E-value: 2.19e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1788 GIEERDQKVENLLNEIKELDSKFHLLEVQLTTKIEACVALEKivEELKKEK-LDLNEKLESFschnqreESSGGLTSNLE 1866
Cdd:TIGR02169 164 GVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRR--EREKAERyQALLKEKREY-------EGYELLKEKEA 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1867 MVTSKfphEGIEDDVAkvtdnwrekclQVENELQRIQSEKDSMEHHALSAEASLEAVQTEklyLEKDNENKQTVITcleE 1946
Cdd:TIGR02169 235 LERQK---EAIERQLA-----------SLEEELEKLTEEISELEKRLEEIEQLLEELNKK---IKDLGEEEQLRVK---E 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1947 GLSVVTSERDQLRgelDTLSKENQELDQMSEKMKEKIRELESHQSEclhlqewLQSLEKDSQALSLVRSELENQIEQLNK 2026
Cdd:TIGR02169 295 KIGELEAEIASLE---RSIAEKERELEDAEERLAKLEAEIDKLLAE-------IEELEREIEEERKRRDKLTEEYAELKE 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2027 EKDSLVWESESLQTKLSESEHEKLAITKALEAALMEKGEVAVRLSSTQEEVHQLRKGIEKLRVRIEADEkkqlhvsEKLK 2106
Cdd:TIGR02169 365 ELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIE-------AKIN 437
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2107 ESERRNDSLQDKVETLERELQMAEEnqelvilDAENCKAEVETLKTQIELMTERLKDLELDLvtirSEKENLLKQLQEKQ 2186
Cdd:TIGR02169 438 ELEEEKEDKALEIKKQEWKLEQLAA-------DLSKYEQELYDLKEEYDRVEKELSKLQREL----AEAEAQARASEERV 506
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2187 GQASELDTLLSSLKNLLEEKEREKIQTKEEAKSAVEM-----LQTQLRElTEEIAALCddQETWKVEEQSLDS--PAQEV 2259
Cdd:TIGR02169 507 RGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEVaagnrLNNVVVE-DDAVAKEA--IELLKRRKAGRATflPLNKM 583
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2260 QQLRNNIEKLKVHLDIDKKKQLQILEKLKESEHQADFlKDT--VENLERELKLSGeNQEHVTLEAE-------------- 2323
Cdd:TIGR02169 584 RDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFKYVF-GDTlvVEDIEAARRLMG-KYRMVTLEGElfeksgamtggsra 661
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2324 ---------KSKAEVETLKATVEKMDQNLRGLQLDLVNIRSEKEDLTKELQKEQSRVSELEtlnSSFENLLREKEQEKVQ 2394
Cdd:TIGR02169 662 prggilfsrSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIE---KEIEQLEQEEEKLKER 738
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2395 MKEeskaavemLQTQLKELSEEVAilcvdqetwkVEEQSLDSPLEEIQQLRNNIGKLKVCLDADKKQQLHilEKLKESEH 2474
Cdd:TIGR02169 739 LEE--------LEEDLSSLEQEIE----------NVKSELKELEARIEELEEDLHKLEEALNDLEARLSH--SRIPEIQA 798
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2475 QADFLKDTVENLERELKLSGENQEHVTLEAEKSKAEVETLKATVEEMDQNLRGLQLDLVNIRSDKEDLTKELQKEQSRVS 2554
Cdd:TIGR02169 799 ELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALR 878
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2555 ELEtlnSSFENLLREKEQEKVQMKEeskaavemLQKELEELNEKMAALGNDQETRKVKEQSLSSQVDSLEHEKAQLlqdl 2634
Cdd:TIGR02169 879 DLE---SRLGDLKKERDELEAQLRE--------LERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGED---- 943
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2635 ddaksnymilqSSVNDLIQEVEDGKQKLEKKDEEISILKS----QTRDQEQLVSKLSQMEGEQQLWKKQKADLENLMVEL 2710
Cdd:TIGR02169 944 -----------EEIPEEELSLEDVQAELQRVEEEIRALEPvnmlAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEY 1012
|
...
gi 528980992 2711 EQK 2713
Cdd:TIGR02169 1013 EKK 1015
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1768-2449 |
3.01e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 96.28 E-value: 3.01e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1768 IQSLELKVKETSNENLRLLHGIEERDQKVENLLNEIKELDSKFHLLEVQLTTKIEACVALEKIVEELKKEKLDLNEKLES 1847
Cdd:TIGR02168 283 IEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEE 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1848 FscHNQREESsggltsnlemvtskfphEGIEDDVAKVTDNWREKCLQVENELQRIQSEKDSMEHHALSAEASLEAVQTEK 1927
Cdd:TIGR02168 363 L--EAELEEL-----------------ESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEI 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1928 LYLEKDNENKQtvITCLEEGLSVVTSERDQLRGELDT----LSKENQELDQMSEKMKEKIRELESHQSECLHLQEWLQSL 2003
Cdd:TIGR02168 424 EELLKKLEEAE--LKELQAELEELEEELEELQEELERleeaLEELREELEEAEQALDAAERELAQLQARLDSLERLQENL 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2004 EKDSQALSL--------------------VRSELENQIE----------------QLNKEKDSLVWESESLQTKLSESEH 2047
Cdd:TIGR02168 502 EGFSEGVKAllknqsglsgilgvlselisVDEGYEAAIEaalggrlqavvvenlnAAKKAIAFLKQNELGRVTFLPLDSI 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2048 EKLAITKALEAALMEKGEVAVRLSSTQEEVHQLRKGIEKL--RVRIEADEKKQLHVSEKLKESERrNDSLQDKV------ 2119
Cdd:TIGR02168 582 KGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlgGVLVVDDLDNALELAKKLRPGYR-IVTLDGDLvrpggv 660
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2120 ---ETLERELQMAEENQELvildaENCKAEVETLKTQIELMTERLKDLELDLVTIRSEKENLLKQLQEKQGQASELDTLL 2196
Cdd:TIGR02168 661 itgGSAKTNSSILERRREI-----EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDL 735
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2197 SSLKNLLEEKEREKIQTKEEAKSAVEMLQTQLRELTEEIAALCDDQETWKVEEQSLDSPAQEVQQLRNNIEKLKVHLDID 2276
Cdd:TIGR02168 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLL 815
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2277 KKKQLQILEKLKESEHQADFLKDTVENLERELKLSGENQEHVTLEAEKSKAEVETLKATVEKMDQNLRGLQLDLVNIRSE 2356
Cdd:TIGR02168 816 NEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSE 895
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2357 KEDLTKELQKEQSRVSELetlnssfENLLREKEQEKVQMKEESKAAVEMLQTQLKELSEEVAILCVDQETWKV----EEQ 2432
Cdd:TIGR02168 896 LEELSEELRELESKRSEL-------RRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENkiedDEE 968
|
730
....*....|....*..
gi 528980992 2433 SLDSPLEEIQQLRNNIG 2449
Cdd:TIGR02168 969 EARRRLKRLENKIKELG 985
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2256-3038 |
2.34e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 93.20 E-value: 2.34e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2256 AQEVQQLRNNIEKLKVHLDIDKKKQLQilEKLKESEHQADFLKDTVENLERELKlsgenqehvtleaeKSKAEVETLKAT 2335
Cdd:TIGR02168 212 AERYKELKAELRELELALLVLRLEELR--EELEELQEELKEAEEELEELTAELQ--------------ELEEKLEELRLE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2336 VEKMDQNLRGLQLDLVNIRSEKEDLTKELQKEQSRVSELETLNSSFENLLREKEQEKVQMKEESKAAVEMLQTQLKELSE 2415
Cdd:TIGR02168 276 VSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELES 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2416 EVAILCVDQETWKVEEQSLDSPLEEIQQLRNNIGKLKVCLDADKKQQLHILEKLKESEHQADFLKDTVENLERELKLSge 2495
Cdd:TIGR02168 356 LEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA-- 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2496 NQEHVTLEAEKSKAEVETLKATVEEMDQNLRGLQLDLVNIRSDKEDLTKELQKEQSRVSELETLNSSFENLLRekeqekv 2575
Cdd:TIGR02168 434 ELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSE------- 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2576 qmkeeskaAVEMLQKELEELNEKMAALGN----DQETRKVKEQSLSSQVDSLEHEKAQ-------LLQDLDDAKSNYMIL 2644
Cdd:TIGR02168 507 --------GVKALLKNQSGLSGILGVLSElisvDEGYEAAIEAALGGRLQAVVVENLNaakkaiaFLKQNELGRVTFLPL 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2645 QSSVNDLIQEveDGKQKLEKKDEEISILKSqtrdqeqLVSKLSQMEGEQQLWKKQKADLENLMVELEQKIQVLQSKNDAL 2724
Cdd:TIGR02168 579 DSIKGTEIQG--NDREILKNIEGFLGVAKD-------LVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVT 649
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2725 QD----------TLEALQNSSRNLEKELELTKLEkmsfvEKVNTMTVKETELQKEIHAVIQKTVALKEEFSgEKNRLMEE 2794
Cdd:TIGR02168 650 LDgdlvrpggviTGGSAKTNSSILERRREIEELE-----EKIEELEEKIAELEKALAELRKELEELEEELE-QLRKELEE 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2795 LNLMLEEVKSSKGQLKELMLENSELKKSLDcvhkdrmEEQGKMRGEIAEYQLRLQEAEnkhqalllDTNKQHEMEIQTYR 2874
Cdd:TIGR02168 724 LSRQISALRKDLARLEAEVEQLEERIAQLS-------KELTELEAEIEELEERLEEAE--------EELAEAEAEIEELE 788
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2875 EKLTSKEECLSSQKVEIDLLKSSKEELNNSLKATTEILEELKKTKMENLKHADKLKKENDRAQSKIKLLVKSCKQLEEEK 2954
Cdd:TIGR02168 789 AQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELI 868
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2955 VMLQKELSHLEAAQEKQRADtvVDANVDELITEMKELKETLEEKTKEADEYLDKYCSLLISHEKLEKAKEMLETQVARLS 3034
Cdd:TIGR02168 869 EELESELEALLNERASLEEA--LALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS 946
|
....
gi 528980992 3035 SQQS 3038
Cdd:TIGR02168 947 EEYS 950
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1944-2521 |
7.97e-17 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 87.79 E-value: 7.97e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1944 LEEGLSVVTSERDQLRGELDTLSKENQELDQMSEKMKEKIRELESHQSECLHLQEWLQSLEKDSQALSLVRSELENQIEQ 2023
Cdd:PRK02224 211 LESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2024 LNKEKDSLVWESEslqtkLSESEHEKlaitkaleaalmekgeVAVRLSSTQEEVHQLRKGIEKLRVRIEADEKKQLHVSE 2103
Cdd:PRK02224 291 LEEERDDLLAEAG-----LDDADAEA----------------VEARREELEDRDEELRDRLEECRVAAQAHNEEAESLRE 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2104 KLKESERRNDSLQDKVETLERELQMAEEnqelvilDAENCKAEVETLKTQIELMTERLKDLELDLVTIRSEKENLLKQLQ 2183
Cdd:PRK02224 350 DADDLEERAEELREEAAELESELEEARE-------AVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERD 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2184 EKQGQASELDTLLSSLKNLLEEKER-----------------EKIQTKEEAKSAVEMLQTQLRELTEEIAALCDDQETWK 2246
Cdd:PRK02224 423 ELREREAELEATLRTARERVEEAEAlleagkcpecgqpvegsPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAE 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2247 veeqSLDSPAQEVQQLRNNIEKLKVHLDIDKkkqlqilEKLKESEHQADFLKDTVENLERELKLSGENQEHVTLEAEKSK 2326
Cdd:PRK02224 503 ----DLVEAEDRIERLEERREDLEELIAERR-------ETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAR 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2327 AEVETLKATVEKMDQNLRGLQlDLVNIRSEKEDLTKELQKEQSRVSELETLNSSFENLLREKEQEKVQMKEE-SKAAVEM 2405
Cdd:PRK02224 572 EEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEfDEARIEE 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2406 LQTQLKELSEEVAilcvdqetwKVEEQsLDSPLEEIQQLRNNIGKLKVCLDAdkkqqlhiLEKLKEsEHQAdfLKDTVEN 2485
Cdd:PRK02224 651 AREDKERAEEYLE---------QVEEK-LDELREERDDLQAEIGAVENELEE--------LEELRE-RREA--LENRVEA 709
|
570 580 590
....*....|....*....|....*....|....*..
gi 528980992 2486 LERELKLSGENQE-HVTLEAEKSKAEVETLKATVEEM 2521
Cdd:PRK02224 710 LEALYDEAEELESmYGDLRAELRQRNVETLERMLNET 746
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2475-3052 |
6.14e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 82.03 E-value: 6.14e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2475 QADFLKDTVENLERELKLSGENQEHVTLEAEKSKAEVETLKATVEEMDQNLRGLQLDLVNIRSDKEDLTKELQKEQSRVS 2554
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLA 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2555 ELETLNSSFENLLREKEQEKVQMKEESKAA----------VEMLQKELEELNEKMAALGNDQETRKVKEQSLSSQVDSLE 2624
Cdd:TIGR02168 313 NLERQLEELEAQLEELESKLDELAEELAELeekleelkeeLESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2625 HEKAQLLQDLDDAKSNYMILQSSVNDLIQEVEDGKQKLEKKDEEISILKSQTRDQE--QLVSKLSQMEGEQQLWKKQKAD 2702
Cdd:TIGR02168 393 LQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEEleELQEELERLEEALEELREELEE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2703 LENLMVELEQKIQVLQSKNDALQDTLEALQNSSRNLeKELELTKLEKMSFVEKVNTMTVKETELQKEIHAVIQKTV---- 2778
Cdd:TIGR02168 473 AEQALDAAERELAQLQARLDSLERLQENLEGFSEGV-KALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLqavv 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2779 ------------ALKEEFSG----------EKNRLMEELNLMLEEVKSSKGQLKELMLENSELKK-------------SL 2823
Cdd:TIGR02168 552 venlnaakkaiaFLKQNELGrvtflpldsiKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKalsyllggvlvvdDL 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2824 DCVHKDRMEEQGKMR-----GEIAEYQLRLQEAENKHQALLLDTNKqhemEIQTYREKLTSKEECLSSQKVEIDLLKSSK 2898
Cdd:TIGR02168 632 DNALELAKKLRPGYRivtldGDLVRPGGVITGGSAKTNSSILERRR----EIEELEEKIEELEEKIAELEKALAELRKEL 707
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2899 EELNNSLKATTEILEELKKTKMENLKHADKLKKENDRAQSKIKLLVKSCKQLEEEKVMLQKELSHLEAAQEKQRADTV-V 2977
Cdd:TIGR02168 708 EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEeL 787
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 528980992 2978 DANVDELITEMKELKETLEEKTKEADEYLDKYCSLLISHEKLEKAKEMLETQVARLSSQQSKLNLRRSPLVNSLA 3052
Cdd:TIGR02168 788 EAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIE 862
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
2000-2576 |
8.75e-15 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 81.26 E-value: 8.75e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2000 LQSLEKDSQALSLVRSELENQIEQLNKekdsLVWESESLQTKLSESEHEKLAITK----------ALEAALMEKGEVAVR 2069
Cdd:PRK03918 157 LDDYENAYKNLGEVIKEIKRRIERLEK----FIKRTENIEELIKEKEKELEEVLReineisselpELREELEKLEKEVKE 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2070 LSSTQEEVHQLRKGIEKLRVRIEADEKKQLHVSEKLKESERRNDSLQDKVETLERELQMAEENQELVILDAE------NC 2143
Cdd:PRK03918 233 LEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEyldelrEI 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2144 KAEVETLKTQIELMTERLKDLELD---LVTIRSEKENLLKQLQEKQGQASELDTLLSSLKNLLEEKEREKIQTKEEAKSA 2220
Cdd:PRK03918 313 EKRLSRLEEEINGIEERIKELEEKeerLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2221 VEMLQTQLRELTEEIAALCDDQETWKVEEQSLDSPAQEVQQLRNNIEKLKVHLDIDKKKQL---------QILEKLKESE 2291
Cdd:PRK03918 393 LEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELleeytaelkRIEKELKEIE 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2292 HQADFLKDTVENLERELKLSGENQEHVTLEAEKSKAEVETLKATVEKMDQN---LRGLQLDLVNIRSEKEDLTKELQKEQ 2368
Cdd:PRK03918 473 EKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKaeeYEKLKEKLIKLKGEIKSLKKELEKLE 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2369 SRVSELETLNSSFENLLREKEQEKVQMKEESKAAVEMLQTQLKELSE---EVAILCVDQETWKVEEQSLDSPLEEIQQLR 2445
Cdd:PRK03918 553 ELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPfynEYLELKDAEKELEREEKELKKLEEELDKAF 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2446 NNIGKLKVCLDADKKQQLHILEKLKESEHQAdfLKDTVENLERELklsgenqehvtleaEKSKAEVETLKATVEEMDQNL 2525
Cdd:PRK03918 633 EELAETEKRLEELRKELEELEKKYSEEEYEE--LREEYLELSREL--------------AGLRAELEELEKRREEIKKTL 696
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 528980992 2526 RGLQLDLVNIRSDKEDLtKELQKEQSRVSELETLNSSFENLLREKEQEKVQ 2576
Cdd:PRK03918 697 EKLKEELEEREKAKKEL-EKLEKALERVEELREKVKKYKALLKERALSKVG 746
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2321-3047 |
1.15e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 80.88 E-value: 1.15e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2321 EAEKSKAEVETLKATVEKMDQNLRGLQLDLVNIRSEKEDLTK--ELQKEQSRVsELETLNSSFENLLREKEQ--EKVQMK 2396
Cdd:TIGR02169 171 KKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERyqALLKEKREY-EGYELLKEKEALERQKEAieRQLASL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2397 EESKAAVEMLQTQLKELSEEVAILcVDQETWKVEEQSLDSPL---EEIQQLRNNIGKLKVCLDADKKQQLHILEKLKESE 2473
Cdd:TIGR02169 250 EEELEKLTEEISELEKRLEEIEQL-LEELNKKIKDLGEEEQLrvkEKIGELEAEIASLERSIAEKERELEDAEERLAKLE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2474 HQADFLKDTVENLERELKLSGENQEHVTLEAEKSKAEVETLKATVEEMDQNLRGLQLDLVNIRSDKEDLTKE---LQKEQ 2550
Cdd:TIGR02169 329 AEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREineLKREL 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2551 SRVSELETLNSSFENLLREKEQEKVQMKEESKAAVEMLQKELEELNEKMAALGNDQETRKVKEQSLSSQVDSLEHEKAQL 2630
Cdd:TIGR02169 409 DRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKL 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2631 LQDLDDAKSNYMILQSSVNDLIQEVEdgkqklekkdeeisILKSQTRDQEQLVSKLSQMEGEQQLWKKQKAD--LENLMV 2708
Cdd:TIGR02169 489 QRELAEAEAQARASEERVRGGRAVEE--------------VLKASIQGVHGTVAQLGSVGERYATAIEVAAGnrLNNVVV 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2709 ELE----QKIQVLQSKN--DALQDTLEALQNSSRNLEKELEL-------------TKLEKMSFVEKVNTMTVKETELQKE 2769
Cdd:TIGR02169 555 EDDavakEAIELLKRRKagRATFLPLNKMRDERRDLSILSEDgvigfavdlvefdPKYEPAFKYVFGDTLVVEDIEAARR 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2770 iHAVIQKTVALKEEFSgEKNRLMEELNLMLEEVKSSKGQLKELMLENSELKKSLDCVHKDRMEEQGKMRGEIAEYQLRLQ 2849
Cdd:TIGR02169 635 -LMGKYRMVTLEGELF-EKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELS 712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2850 EAENKHQALLLDTNkQHEMEIQTYREKLTSKEECLSSQKVEIDLLKSSKEELNNSLKATTEILEELKKtKMENLK----- 2924
Cdd:TIGR02169 713 DASRKIGEIEKEIE-QLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEE-ALNDLEarlsh 790
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2925 --------HADKLKKENDRAQSKIKLLVKSCKQLEEEKVMLQKELSHLEAAQ---EKQRADtvVDANVDELITEMKELKE 2993
Cdd:TIGR02169 791 sripeiqaELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRidlKEQIKS--IEKEIENLNGKKEELEE 868
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....
gi 528980992 2994 TLEEKTKEADEYLDKYCSLLISHEKLEKAKEMLETQVARLSSQQSKLNLRRSPL 3047
Cdd:TIGR02169 869 ELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSEL 922
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
2103-2961 |
3.48e-14 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 79.63 E-value: 3.48e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2103 EKLKESERRNDSLQDKVETLERELQMAEENQELVILDAENCKAEVETLKTQIELMTERLKDLELDLVTIRSEKENLLKQL 2182
Cdd:pfam02463 180 EETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2183 QEKqgqasELDTLLSSLKNLLEEKEREKIQTKEEAKSAVEmLQTQLRELTEEIAALCDDQETWKVEEQSLDSPAQEVQQL 2262
Cdd:pfam02463 260 IEK-----EEEKLAQVLKENKEEEKEKKLQEEELKLLAKE-EEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKE 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2263 RNNIEKLKVHLDIDKKKQLQILEKLKESEHQADFLKDTVENLERELKLSGENQEHVTLEAEKSKAEVETLKATVEKMDQN 2342
Cdd:pfam02463 334 KEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLEL 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2343 LRGLQLDLVNIRSEKEDLTKELQKEQSRVSELETLNSSFENLLREKEQEKVQMKEESKAAVEMLQTQLKELSEEVAILCV 2422
Cdd:pfam02463 414 ARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQ 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2423 DQETWKVEEQSLDSPLEEIQQLRNNIGKLKVCLDADKKQQLHILEKLkeSEHQADFLKDTVENLERELKLSGENQEHVTL 2502
Cdd:pfam02463 494 KLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVEN--YKVAISTAVIVEVSATADEVEERQKLVRALT 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2503 EAEKSKAEVETLKATVEEMDQNLRGLQLDLVNIRSDKEDLTKELQKEQSRVSELETLNSSfenLLREKEQEKVQMKEESK 2582
Cdd:pfam02463 572 ELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKD---TELTKLKESAKAKESGL 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2583 AAVEMLQKELEELNEKMAALGNDQETRKVKEQSLSSQVDSLEHEKAQLLQDLDDAKSNYMILQSSVNDLIQEV--EDGKQ 2660
Cdd:pfam02463 649 RKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEEllADRVQ 728
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2661 KLEKKDEEISILKSQTRDQEQLVSKLSQMEGEQQLWKKQKADLENLMVELEQKIQVLQSKNDALQDTLEALQNSSRNLEK 2740
Cdd:pfam02463 729 EAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEE 808
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2741 ELELTKLEKMSFVEKVNTMTVKETELQKEIHAVIQKTVALKEEFSGEKNRLMEELNLMLEEVKSSKGQLKELMLENSELK 2820
Cdd:pfam02463 809 ELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDEL 888
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2821 KSLDCvhKDRMEEQGKMRGEIAEYQLRLQEAENKHQALLLDTNKQHemeiqtyreKLTSKEECLSSQKVEIDLLKSSKEE 2900
Cdd:pfam02463 889 ESKEE--KEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLK---------YEEEPEELLLEEADEKEKEENNKEE 957
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 528980992 2901 LNNSLKATTEILEELKKTKMENLKHADKLKKENDRAQSKIKLLVKSCKQLEEEKVMLQKEL 2961
Cdd:pfam02463 958 EEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQR 1018
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1978-2715 |
1.63e-13 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 76.98 E-value: 1.63e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1978 KMKEKIRELESHQSECLHLQEWLQSLEKDSQALSLVRSELENQIEQLNKEKDSLVWESESLQTKLSESEHEKLAITKALE 2057
Cdd:TIGR04523 34 EEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIK 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2058 AALMEKGEVAVRLSSTQEEVHQLRKGIEKLRVRIEADEKKQLHVSEKLKESERRNDSLQDKVETLERELQMAEENqelvI 2137
Cdd:TIGR04523 114 NDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKN----I 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2138 LDAENCKAEVETLKTQIELMTERLKDLELDLVTIRSEKENLLKQLQEKQGQASELDTLLSS----LKNLLEEKEREKIQT 2213
Cdd:TIGR04523 190 DKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNtqtqLNQLKDEQNKIKKQL 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2214 KEEaksavemlQTQLRELTEEIAALCDDQETWKVEEQSLDSPAQEvqqlrNNIEKLKVHLDIDKKKQLQILEKLKESEHQ 2293
Cdd:TIGR04523 270 SEK--------QKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQ-----DWNKELKSELKNQEKKLEEIQNQISQNNKI 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2294 ADFLKDTVENLERELKLSGENQEHVTLEAEKSKAEVETLKATVEKMDQNLRGLQLDLVNIRSEKEDLTKELQKEQSRVSE 2373
Cdd:TIGR04523 337 ISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKK 416
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2374 LETlnssfENLLREKEQEKVqmkeesKAAVEMLQTQLKELSEEVAILcvdQETWKVEEQSLDSPLEEIQQLRNNIGKLKV 2453
Cdd:TIGR04523 417 LQQ-----EKELLEKEIERL------KETIIKNNSEIKDLTNQDSVK---ELIIKNLDNTRESLETQLKVLSRSINKIKQ 482
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2454 CLDADKKQQLHILEKLKESEHQADFLKDTVENLERELKLSGENQEHVTLEAEKSKAEVETLKATVEEMDQNLRGLQLDLV 2533
Cdd:TIGR04523 483 NLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKE 562
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2534 nirsdKEDLTKELQKEQSRVSELETLNSSFENLLREKEQEKVQMK---EESKAAVEMLQKELEELNEKMAALGNDQETRK 2610
Cdd:TIGR04523 563 -----IDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIkeiEEKEKKISSLEKELEKAKKENEKLSSIIKNIK 637
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2611 VKEQSLSSQVDSLEHEKAQLLQDLDDAKSNYMILQSSVNDLIQEVEDGKQKLEKKDEEISILKSQTRDQEQLVSKLSQME 2690
Cdd:TIGR04523 638 SKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDWLKELSLHYKKYITRMIRIKDLPKLEEKYKEIE 717
|
730 740
....*....|....*....|....*
gi 528980992 2691 GEQQLWKKQKADLENLMVELEQKIQ 2715
Cdd:TIGR04523 718 KELKKLDEFSKELENIIKNFNKKFD 742
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
400-1185 |
2.04e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.02 E-value: 2.04e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 400 LSRQQRSFQTLDQECTQMKARLTQELQQAKNTYNILQAELDKVTSVKQQIEKKLEEFKQNFSKTEQALQASQTKENELRR 479
Cdd:TIGR02168 237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLER 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 480 SSEEMKRENSLLKSQSEQRAREVCHLEEELKKAKQCLSQSQNFAEEMKAKNTSQETMLRDLQEKINQQENSLTLEKLKLA 559
Cdd:TIGR02168 317 QLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIA 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 560 LADLEKQRdcsqdllkkREHHIEQLNEKLSKTERESEALLSALELKKkeyeelkeektlfsrwKSENEQLLNQMESEKES 639
Cdd:TIGR02168 397 SLNNEIER---------LEARLERLEDRRERLQQEIEELLKKLEEAE----------------LKELQAELEELEEELEE 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 640 LQSKVNHLETCLKTQQIKSHEYNERVRTLEMERENLNVEIRNLQNvidsktaeaetqkraygeLQQKAEfSDQKHEKEIE 719
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER------------------LQENLE-GFSEGVKALL 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 720 NMCLKISHLTGQVedlehklqllsSEIMDKDQRYQD--LHAESESLRDLLKSRDSSAM----TIEPHQRSRLAF-----E 788
Cdd:TIGR02168 513 KNQSGLSGILGVL-----------SELISVDEGYEAaiEAALGGRLQAVVVENLNAAKkaiaFLKQNELGRVTFlpldsI 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 789 QQSALNNSFANIIGEQESVPSERSRCHVATDQSPKS-SSMLQNRVV--SLEFSLESQKQMNSDlqkqcEELVQIKGEI-- 863
Cdd:TIGR02168 582 KGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAlSYLLGGVLVvdDLDNALELAKKLRPG-----YRIVTLDGDLvr 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 864 -EENLMKAEQMHQSFVAETSQRISKLQEDTSVHQNVVAETLAALESKERELQLLNEKLETEQAETGELKKNNHLLQESLK 942
Cdd:TIGR02168 657 pGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLA 736
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 943 ELQFLSETLSLEKKELNSIISLNKKDIEELTQENGTLKEINATLTQEKMNLLQKTESFSNCIDERDRSISELSNQYKQER 1022
Cdd:TIGR02168 737 RLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLN 816
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1023 LTLLQRCEETGNAFQDLSEKYKAVQEKNSKLECLLSECTGVcEDRKNELGQLKETFAREHQAFVSQLALAEERNQNLIVE 1102
Cdd:TIGR02168 817 EEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESL-AAEIEELEELIEELESELEALLNERASLEEALALLRSE 895
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1103 LETVQQALQ---SEITDIQNSSKRETDGLKQEIMNLKEEQNKMQQEVSALLQENEHLMELMKTKHEHQCLELEPIQDSEK 1179
Cdd:TIGR02168 896 LEELSEELReleSKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLK 975
|
....*..
gi 528980992 1180 E-EREIN 1185
Cdd:TIGR02168 976 RlENKIK 982
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2456-3033 |
6.55e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 75.36 E-value: 6.55e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2456 DADKKQQLHILEKLKESEHQADFLKDTVENLERELklsgenqEHVTLEAEKSKAEVETLKATVEEMDQNLRGLQLDLVNI 2535
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELEAEL-------EELEAELAELEAELEELRLELEELELELEEAQAEEYEL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2536 RSDKEDLTKELQKEQSRVSELETLNSSFENLLREKEQEKVQMKEESKAAVEMLQKELEELNEKMAALGNDQETRKVKEQS 2615
Cdd:COG1196 294 LAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2616 LSSQVDSLEHEKAQLLQDLDDAKSnymiLQSSVNDLIQEVEDGKQKLEKKDEEISILKSQTRDQEQLVSKLSQMEGEQQL 2695
Cdd:COG1196 374 LAEAEEELEELAEELLEALRAAAE----LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2696 WKKQKADLENLMVELEQKIQVLQSKNDALQDTLEALQNSSRNLEKELELTKLEKMSFVEKVNTMTVKE--TELQKEIHAV 2773
Cdd:COG1196 450 EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAglRGLAGAVAVL 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2774 IQKTVALKEEFSGEKNRLMEELNLMLEEV--------KSSKGQLKELMLENSELKKSLDCVHKDRMEEQGKMRGEIAEYQ 2845
Cdd:COG1196 530 IGVEAAYEAALEAALAAALQNIVVEDDEVaaaaieylKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLR 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2846 LRLQEAENKHQALLLDTNKQHEMEIQTYREKLTSKEECLSSQKVEIDLLKSSKEELNNSLKATTEILEELKKTKMENLKH 2925
Cdd:COG1196 610 EADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLA 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2926 ADKLKKENDRAQskikllvksckqlEEEKVMLQKELSHLEAAQEKQRADTVVDANVDELITEMKELKETLEEKTKEADEY 3005
Cdd:COG1196 690 EEELELEEALLA-------------EEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEEL 756
|
570 580
....*....|....*....|....*...
gi 528980992 3006 LDKYcslliSHEKLEKAKEMLETQVARL 3033
Cdd:COG1196 757 PEPP-----DLEELERELERLEREIEAL 779
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1789-2394 |
1.51e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 73.94 E-value: 1.51e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1789 IEERDQKVENLLNEIKELDSKFHLLEVQLTTKIEACVALEKIVEELKKEKLDLNEKLESFSCHNQREESSGGLTSNLEmv 1868
Cdd:PRK03918 181 LEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLE-- 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1869 tskfphegieddvakvtdnwrEKCLQVENELQRIQSEKDSMEHHALSAEaSLEAVQTEKLYLEKDNENKQTVITCLEEGL 1948
Cdd:PRK03918 259 ---------------------EKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDELREIEKRL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1949 SVVTSERDQLRGELDTLSKENQELDQMSEKMKEKIRELE----SHQ--SECLHLQEWLQSLEKDSQALSLvrSELENQIE 2022
Cdd:PRK03918 317 SRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEeleeRHElyEEAKAKKEELERLKKRLTGLTP--EKLEKELE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2023 QLNKEKDSLVWESESLQTKLSESEHEKLAITKALEAALMEKGEVAV--RLSSTQEEVHQLRKGIEKLRvRIEADEKKQLH 2100
Cdd:PRK03918 395 ELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVcgRELTEEHRKELLEEYTAELK-RIEKELKEIEE 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2101 VSEKLKESERRNDSLQDKVETLERELQMAEENQELVILDAENCKAEVETLKTQIELMTERlkdleldLVTIRSEKENLLK 2180
Cdd:PRK03918 474 KERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEK-------LIKLKGEIKSLKK 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2181 QLQEKQGQASELDTLLSSLKNLLEEKEREKIQTKEEAKSAVEMLQTQLRELTE---EIAALCDDQETWKVEEQSLDSPAQ 2257
Cdd:PRK03918 547 ELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPfynEYLELKDAEKELEREEKELKKLEE 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2258 EVQQLRNNIEKLKVHLDIDKKKQLQILEKLKESEHQAdfLKDTVENLERELklsgenqehvtleaEKSKAEVETLKATVE 2337
Cdd:PRK03918 627 ELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEE--LREEYLELSREL--------------AGLRAELEELEKRRE 690
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 528980992 2338 KMDQNLRGLQLDLVNIRSEKEDLtKELQKEQSRVSELETLNSSFENLLREKEQEKVQ 2394
Cdd:PRK03918 691 EIKKTLEKLKEELEEREKAKKEL-EKLEKALERVEELREKVKKYKALLKERALSKVG 746
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
288-568 |
4.24e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 72.66 E-value: 4.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 288 QELRSKMSELE-----LRLQGQEKEMKGQVNKLQELQLQLEKAKVELNEKEKVLNKNRDELVRTTSQYDQASAKCTALEQ 362
Cdd:COG1196 216 RELKEELKELEaelllLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 363 KLKKLTEDLSCQRQNAESARcsleqKIKEKEKEFQEELSRQQRSFQTLDQECTQMKARLTQELQQAKNTYNILQAELDKV 442
Cdd:COG1196 296 ELARLEQDIARLEERRRELE-----ERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 443 TSVKQQIEKKLEEFKQNFSKTEQALQASQTKENELRRSSEEMKRENSLLKSQSEQRAREVCHLEEELKKAKQCLSQSQNF 522
Cdd:COG1196 371 EAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 528980992 523 AEEMKAKNTSQETMLRDLQEKINQQENSLTLEKLKLALADLEKQRD 568
Cdd:COG1196 451 EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLL 496
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2221-2969 |
4.37e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 72.41 E-value: 4.37e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2221 VEMLQTQLRELTEEIAALCD-DQETWKVEEqsldspaqEVQQLRNNIEKLKVHLDIdKKKQLQILEKLKESEHQADFLKD 2299
Cdd:TIGR02169 148 ISMSPVERRKIIDEIAGVAEfDRKKEKALE--------ELEEVEENIERLDLIIDE-KRQQLERLRREREKAERYQALLK 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2300 TVENLERELKLsGENQEHVTlEAEKSKAEVETLKATVEKMDQNLRGLQLDLVNIRSEKEDLTKELQKE--------QSRV 2371
Cdd:TIGR02169 219 EKREYEGYELL-KEKEALER-QKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgeeeqlrvKEKI 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2372 SELETLNSSFENLLREKEQEKVQMKEESKAAVEmlqtQLKELSEEVAILCVDQETWKVEEQSLDSPLEEIQQ----LRNN 2447
Cdd:TIGR02169 297 GELEAEIASLERSIAEKERELEDAEERLAKLEA----EIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEeledLRAE 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2448 IGKLKVCLDADKKQQLHILEKLKESEHQADFLKDTVENLERELKLSGENQEHVTLEAEKSKAEVETLKATVEEMDQNLRG 2527
Cdd:TIGR02169 373 LEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKK 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2528 LQLDLVNIRSDKEDLTKELQKEQSRVSELETLNSSFENLLREKEQEKVQMKEE---SKAAVEMLQK----------ELEE 2594
Cdd:TIGR02169 453 QEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERvrgGRAVEEVLKAsiqgvhgtvaQLGS 532
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2595 LNEKMA-----ALGN--------DQETRK-----VKEQSLS------------SQVD-SLEHEKAQL-----LQDLDD-- 2636
Cdd:TIGR02169 533 VGERYAtaievAAGNrlnnvvveDDAVAKeaielLKRRKAGratflplnkmrdERRDlSILSEDGVIgfavdLVEFDPky 612
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2637 AKSNYMILQSSVndLIQEVEDGKQKL----------EKKDEEISILKSQTRDQEQLVSKLSQMEGEQQLwKKQKADLENL 2706
Cdd:TIGR02169 613 EPAFKYVFGDTL--VVEDIEAARRLMgkyrmvtlegELFEKSGAMTGGSRAPRGGILFSRSEPAELQRL-RERLEGLKRE 689
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2707 MVELEQKIQVLQSKNDALQDTLEALQNSSRNLEKELELTKLEKMSFVEKVNTMTVKETELQKEIHAVIQKTVALKEEFSg 2786
Cdd:TIGR02169 690 LSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIE- 768
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2787 EKNRLMEELNLMLEEVksskgqlkELMLENSELKKSldcvhkdrMEEQGKMRGEIAEYQLRLQEAENKHQALLLDtNKQH 2866
Cdd:TIGR02169 769 ELEEDLHKLEEALNDL--------EARLSHSRIPEI--------QAELSKLEEEVSRIEARLREIEQKLNRLTLE-KEYL 831
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2867 EMEIQTYREKLTSKEECLSSQKVEIDLLKSSKEELNNSLKATTEILEELKKTKMEnlkhadkLKKENDRAQSKIKLLVKS 2946
Cdd:TIGR02169 832 EKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGD-------LKKERDELEAQLRELERK 904
|
810 820
....*....|....*....|...
gi 528980992 2947 CKQLEEEKVMLQKELSHLEAAQE 2969
Cdd:TIGR02169 905 IEELEAQIEKKRKRLSELKAKLE 927
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
2014-2526 |
4.85e-12 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 72.38 E-value: 4.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2014 RSELENQIEQLNKEK----------DSLVWESESLQTKLSESEHEKLAITKALEAALMEKGEVAVRLSSTQEEVHQLRKG 2083
Cdd:PRK02224 215 LAELDEEIERYEEQReqaretrdeaDEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2084 IEKLRVRIEADEKKQLHVSEKLKESERRNDSLQDKVETLERELQMAEENQELVILDAENCKAEVETLKTQIELMTERLKD 2163
Cdd:PRK02224 295 RDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEE 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2164 LELDLVTIRSEKENLLKQLQEKQGQASELDTLLSSLKNLLEEKEREKIQTKEEAKSAVEMLQTqLRELTEEIAALCDDQE 2243
Cdd:PRK02224 375 AREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRT-ARERVEEAEALLEAGK 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2244 TWKVEEQSLDSP--------AQEVQQLRNNIEKLKVHLDiDKKKQLQILEKLKESEHQADFLKDTVENLERELKLSGENQ 2315
Cdd:PRK02224 454 CPECGQPVEGSPhvetieedRERVEELEAELEDLEEEVE-EVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETI 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2316 EHVTLEAEKSKAEVETLKATVEKMDQNLRGLQLDLVNIRSEKEDLTKELQKEQSRVSELETLNSSFENL---------LR 2386
Cdd:PRK02224 533 EEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIadaedeierLR 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2387 EKEQEKVQMKEESKAAVEMLQTQLKELSEEVAilcvdqetwkveeqslDSPLEEIQQLRNNIgklkvcldadKKQQLHIL 2466
Cdd:PRK02224 613 EKREALAELNDERRERLAEKRERKRELEAEFD----------------EARIEEAREDKERA----------EEYLEQVE 666
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 528980992 2467 EKLKESEHQADFLKDTVENLERELK-LSGENQEHVTLEAEKSK-----AEVETLKATVEEMDQNLR 2526
Cdd:PRK02224 667 EKLDELREERDDLQAEIGAVENELEeLEELRERREALENRVEAlealyDEAEELESMYGDLRAELR 732
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
2124-2686 |
5.42e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 72.02 E-value: 5.42e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2124 RELQMAEENQELVILDAENCKAEVETLKTQIELMTERLKDLELDLVTIRSEKENLLKQLQEKQGQASELDTLLSSLKNL- 2202
Cdd:PRK03918 172 KEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLe 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2203 -----LEEKEREKIQTKEEAKSAVEMLQTQLRELTE------EIAALCDDQETWKVEEQSLDSPAQEVQQLRNNIEKLKV 2271
Cdd:PRK03918 252 gskrkLEEKIRELEERIEELKKEIEELEEKVKELKElkekaeEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2272 HLDIDKKKQLQILEKLKESEHQADFLKDTVENLERELKLSGENQEhvtLEAEKSKAEVETLKATVEKMDQNLRGLQLDLV 2351
Cdd:PRK03918 332 ELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELER---LKKRLTGLTPEKLEKELEELEKAKEEIEEEIS 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2352 NIRSEKEDLTKELQKEQSRVSELETLNSSFENLLRE-KEQEKVQMKEESKAAVEMLQTQLKELSEEVAILcvdqetwKVE 2430
Cdd:PRK03918 409 KITARIGELKKEIKELKKAIEELKKAKGKCPVCGRElTEEHRKELLEEYTAELKRIEKELKEIEEKERKL-------RKE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2431 EQSLDSPLEEIQQLRNNIGKLKVCLDADKKQQLHILEKLKESEHQADFLKDTVENLERELKLSGENQEHVTlEAEKSKAE 2510
Cdd:PRK03918 482 LRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLE-ELKKKLAE 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2511 VETLKATVEEMDQNL--RGLQLDLVNIRSDKEDLtKELQKEQSRVSELETLNSSFENLLREKEQEKVQMKE------ESK 2582
Cdd:PRK03918 561 LEKKLDELEEELAELlkELEELGFESVEELEERL-KELEPFYNEYLELKDAEKELEREEKELKKLEEELDKafeelaETE 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2583 AAVEMLQKELEELNEKMaalgNDQETRKVKEQ--SLSSQVDSLEHEKAQLLQDLDDAKSNymilqssvndlIQEVEDGKQ 2660
Cdd:PRK03918 640 KRLEELRKELEELEKKY----SEEEYEELREEylELSRELAGLRAELEELEKRREEIKKT-----------LEKLKEELE 704
|
570 580
....*....|....*....|....*.
gi 528980992 2661 KLEKKDEEISILKSQTRDQEQLVSKL 2686
Cdd:PRK03918 705 EREKAKKELEKLEKALERVEELREKV 730
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
2104-2785 |
5.44e-12 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 71.98 E-value: 5.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2104 KLKESERRNDSLQDKVETLERELQMAEENQELVILDAENCKAEVETLKTQIELMTERLKDLELDLVTIRSEKENLLKQLQ 2183
Cdd:TIGR04523 34 EEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIK 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2184 EKQGQASELDTLLSSLKNLLEEKEREKIQTKEEAK---SAVEMLQTQLRELTEEIAALCDDQETWKVEEQSLDSPAQEVQ 2260
Cdd:TIGR04523 114 NDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKkkeKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIK 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2261 QLRNNIEKLKVHLDIDKKKQLQILEKLKESEHQADFLKDTVENLERELklsgenqEHVTLEAEKSKAEVETLKATVEKMD 2340
Cdd:TIGR04523 194 NKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEI-------NEKTTEISNTQTQLNQLKDEQNKIK 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2341 QNLRGLQLDLVNIRSEKEDLTKELQKEQSRVSEL-----ETLNSSFENLLREKEQEKVQMKEEskaaVEMLQTQLKELSE 2415
Cdd:TIGR04523 267 KQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLnnqkeQDWNKELKSELKNQEKKLEEIQNQ----ISQNNKIISQLNE 342
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2416 EVAILCVDQETWKVEEQSLDSPLEEIQQLRNNIgklkvcldadKKQQLHILEKLKESEHQADFLKDTVENLERELKLSGE 2495
Cdd:TIGR04523 343 QISQLKKELTNSESENSEKQRELEEKQNEIEKL----------KKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDE 412
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2496 NQEHVTLEAEKSKAEVETLKATVEEMDQNLRglqlDLVNIRSDKEDLTKEL-QKEQSRVSELETLNSSFENLLREKEQEK 2574
Cdd:TIGR04523 413 QIKKLQQEKELLEKEIERLKETIIKNNSEIK----DLTNQDSVKELIIKNLdNTRESLETQLKVLSRSINKIKQNLEQKQ 488
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2575 VQMKEEskaavemlQKELEELNEKMAALGNDQETRKVKEQSLSSQVDSLEHEKAQLLQDLDDAKSNYMILQSSVN-DLIQ 2653
Cdd:TIGR04523 489 KELKSK--------EKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKkENLE 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2654 EVEDGKQK-LEKKDEEISILKSQtrdQEQLVSKLSQMEGEQQLWKKQKADLENLMVELEQKIQVLQSKNDALQDTLEALQ 2732
Cdd:TIGR04523 561 KEIDEKNKeIEELKQTQKSLKKK---QEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIK 637
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|...
gi 528980992 2733 NSSRNLEKELELTKLEKMSFVEKVNTMTVKETELQKEIHAVIQKTVALKEEFS 2785
Cdd:TIGR04523 638 SKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDWLKELS 690
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
2176-2770 |
6.16e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 72.02 E-value: 6.16e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2176 ENLLKQLQEKQGQASELDTLLSS---LKNLLEEKEREKIQTKEEAKSavemLQTQLRELTEEIAALcddqetwkveeqsl 2252
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRtenIEELIKEKEKELEEVLREINE----ISSELPELREELEKL-------------- 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2253 DSPAQEVQQLRNNIEKLKVHLDIDKKKQLQILEKLKESEHQADFLKDTVENLERELKLSGenqehvtlEAEKSKAEVETL 2332
Cdd:PRK03918 227 EKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK--------ELKEKAEEYIKL 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2333 KATVEKMDQNLRGLQLDLVNIRSEKEDLTKELQKEQSRVSELETLNSSFENLLREKE--QEKVQMKEESKAavemLQTQL 2410
Cdd:PRK03918 299 SEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEelEERHELYEEAKA----KKEEL 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2411 KELSEEVAILCVDQETWKVEEqsLDSPLEEIQQLRNNIGKLKVCLDADKKQQLHILEKLKESehqadflKDTVENLEREL 2490
Cdd:PRK03918 375 ERLKKRLTGLTPEKLEKELEE--LEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKA-------KGKCPVCGREL 445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2491 klsgeNQEHVTLEAEKSKAEVETLKATVEEMDQNLRGLQLDLVNIRSDKEDlTKELQKEQSRVSELETLNSSFENLLREK 2570
Cdd:PRK03918 446 -----TEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKK-ESELIKLKELAEQLKELEEKLKKYNLEE 519
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2571 EQEKVQMKEESKAAVEMLQKELEELN---EKMAALGNDQETRKVKEQSLSSQVDSLEHEKAQL-----------LQDLDD 2636
Cdd:PRK03918 520 LEKKAEEYEKLKEKLIKLKGEIKSLKkelEKLEELKKKLAELEKKLDELEEELAELLKELEELgfesveeleerLKELEP 599
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2637 AKSNYMILQSSVNDL---IQEVEDGKQKLEKKDEEISILKSqtrDQEQLVSKLSQMegEQQLWKKQKADLENLMVELEQK 2713
Cdd:PRK03918 600 FYNEYLELKDAEKELereEKELKKLEEELDKAFEELAETEK---RLEELRKELEEL--EKKYSEEEYEELREEYLELSRE 674
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 528980992 2714 IQVLQSKNDALQDTLEALQNSSRNLEKELELTKLEKMSfVEKVNTMTVKETELQKEI 2770
Cdd:PRK03918 675 LAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKE-LEKLEKALERVEELREKV 730
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
420-1167 |
6.30e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.01 E-value: 6.30e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 420 RLTQELQQAKNTYNILQAELDKVTSVKQQIEKKLEEFKQNFSKTEQALQASQTKENELRRSSEEMKRENSLLKSQSEQRA 499
Cdd:TIGR02168 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 500 REVCHLEEELKKAKQCLSQSQNFAEEMKAKNTSQETMLRDLQEKINQQENslTLEKLKLALADLEKQRDCSQDLLKKREH 579
Cdd:TIGR02168 316 RQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEA--ELEELESRLEELEEQLETLRSKVAQLEL 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 580 HIEQLNEKLSKTERESEALLSALElkkkeyeelkeektlfsRWKSENEQLLNQM-ESEKESLQSKVNHLETCLKTQQIKS 658
Cdd:TIGR02168 394 QIASLNNEIERLEARLERLEDRRE-----------------RLQQEIEELLKKLeEAELKELQAELEELEEELEELQEEL 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 659 HEYNERVRTLEMERENLNVEIRNLQNVIDSKTAEAETQKRAYGELQQKaefsdQKHEKEIENMCLKISHLTGQVedlehk 738
Cdd:TIGR02168 457 ERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGF-----SEGVKALLKNQSGLSGILGVL------ 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 739 lqllsSEIMDKDQRYQD--LHAESESLRDLLKSRDSSAM----TIEPHQRSRLAF-----EQQSALNNSFANIIGEQESV 807
Cdd:TIGR02168 526 -----SELISVDEGYEAaiEAALGGRLQAVVVENLNAAKkaiaFLKQNELGRVTFlpldsIKGTEIQGNDREILKNIEGF 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 808 PSERSRCHVATDQSPKS-SSMLQNRVV--SLEFSLESQKQMNSdlqkqceelvqikgeieenlmkaeqmHQSFVAETSQR 884
Cdd:TIGR02168 601 LGVAKDLVKFDPKLRKAlSYLLGGVLVvdDLDNALELAKKLRP--------------------------GYRIVTLDGDL 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 885 ISKlqeDTSVHQNVVAETLAALEsKERELQLLNEKLETEQAETGELKKNNHLLQESLKELQFLSETLSLEKKELNSIISL 964
Cdd:TIGR02168 655 VRP---GGVITGGSAKTNSSILE-RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISA 730
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 965 NKKDIEELTQENGTLKEINATLTQEKMNLLQKTESFSNCIDERDRSISELsnqyKQERLTLLQRCEETGNAFQDLSEKYK 1044
Cdd:TIGR02168 731 LRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA----EAEIEELEAQIEQLKEELKALREALD 806
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1045 AVQEKNSKLECLLSECTGVCEDRKNELGQLKETFAREHQAFvSQLALAEERNQNLIVELETVQQALQSEI---TDIQNSS 1121
Cdd:TIGR02168 807 ELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQI-EELSEDIESLAAEIEELEELIEELESELealLNERASL 885
|
730 740 750 760
....*....|....*....|....*....|....*....|....*.
gi 528980992 1122 KRETDGLKQEIMNLKEEQNKMQQEVSALLQENEHLMELMKTKHEHQ 1167
Cdd:TIGR02168 886 EEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRL 931
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
2144-3000 |
7.01e-12 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 71.93 E-value: 7.01e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2144 KAEVETLKTQIElMTERLKDLELDLVTIRSEKENLLKQLQEKQGQASELDTLLSSLKNLLEEKEREKIQTKEEAKSAVEM 2223
Cdd:pfam02463 169 RKKKEALKKLIE-ETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLR 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2224 LQTQLRELTEEIAALCDDQETWKVEEQSLDSPAQEVQqlrnniEKLKVHLDIDKKKQLQILEKLKESEHQADFLKDTVEN 2303
Cdd:pfam02463 248 DEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQ------EEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEK 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2304 LERELKLSGENQEHVTLEAEKSKAEVETLKATVEKMDQNLRGLQLDLVNIRSEKED-LTKELQKEQSRVSELETLNSSFE 2382
Cdd:pfam02463 322 EKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAkKKLESERLSSAAKLKEEELELKS 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2383 NLLREKEQEKVQMKEESKAAVEMLQTQLKELSEEVAILCVDQETWKVEEQSLDSPLEEIQQLRNNIGKLKVCLDADKKQQ 2462
Cdd:pfam02463 402 EEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVK 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2463 LHILEKLKESEHQADFLKDTVENLERELKLSGENQEHVTLEAEKSKAEVETLKATVEEMDQNLRGLQLDLVNirSDKEDL 2542
Cdd:pfam02463 482 LQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEV--SATADE 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2543 TKELQKEQSRVSELETLNSSFENLLREKEQEKVQMKEESKAAVEMLQKELEELNEKMaalgNDQETRKVKEQSLSSQVDS 2622
Cdd:pfam02463 560 VEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEAD----EDDKRAKVVEGILKDTELT 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2623 LEHEKAQLLQDLDDAKSNYMILQSSVNDLIQEVEDGKQKLEKKDEEISILKSQTRDQEQLvskLSQMEGEQQLWKKQKAD 2702
Cdd:pfam02463 636 KLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEIL---RRQLEIKKKEQREKEEL 712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2703 LENLMVELEQKIQVLQSKNDALQDTLEALQNSSRNLEKELELTKLEKMSFVEKVNTMTVKETELQKEIHAVIQKTVALKE 2782
Cdd:pfam02463 713 KKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEK 792
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2783 EfsGEKNRLMEELNLMLEEVKSSKGQLKELM-LENSELKKSLDCVHKDRMEEQGKMRGEIA--EYQLRLQEAENKHQALL 2859
Cdd:pfam02463 793 E--EKLKAQEEELRALEEELKEEAELLEEEQlLIEQEEKIKEEELEELALELKEEQKLEKLaeEELERLEEEITKEELLQ 870
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2860 LDTNKQHEMEIQTYREKLTSKEECLSSQKVEIDLLKSSKEELNNSlkaTTEILEELKKTKMENLKHADKLKKENDRAQSK 2939
Cdd:pfam02463 871 ELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEK---ENEIEERIKEEAEILLKYEEEPEELLLEEADE 947
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 528980992 2940 IKLLVKSCKQLEEEKVMLQKELSHLEAAQEKQRADtVVDANVDELITEMKELKETLEEKTK 3000
Cdd:pfam02463 948 KEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEE-FEEKEERYNKDELEKERLEEEKKKL 1007
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1976-2685 |
1.18e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 71.33 E-value: 1.18e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1976 SEKMKEKIRELESHQSECLHLQEWLQSLEKDSQALSLVRSELENQIEQLNKEKDSLVWESESlqtKLSESEHEKLAITKA 2055
Cdd:PTZ00121 1181 ARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEA---KKAEEERNNEEIRKF 1257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2056 LEAALMEKGEVAVRLSSTQE-EVHQLRKGIEKLRVR--IEADEKKQLHVSEKLKESERRNDSLQDKVETLERELQMAEEN 2132
Cdd:PTZ00121 1258 EEARMAHFARRQAAIKAEEArKADELKKAEEKKKADeaKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKK 1337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2133 QELVILDAENCKAEVETLKTQIELMTERLKDLELDLVTIRSEKENLLKQLQEKQgQASELDTllsslKNLLEEKEREKIQ 2212
Cdd:PTZ00121 1338 AEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK-KADEAKK-----KAEEDKKKADELK 1411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2213 TKEEAKSAVEMLQTQLRELTEEIAALCDDQETWKVEEqsLDSPAQEVQQLRNNIEKlkvhldIDKKKQLQILEKLKESEH 2292
Cdd:PTZ00121 1412 KAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADE--AKKKAEEAKKAEEAKKK------AEEAKKADEAKKKAEEAK 1483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2293 QADFLKDTVENLERELKLSGENQEHVTLEAEKSKAEVETLKATVEKMDQNLRGLQLDlvniRSEKEDLTKELQKEQSRVS 2372
Cdd:PTZ00121 1484 KADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAK----KAEEKKKADELKKAEELKK 1559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2373 ELETLNSSFENLLREKEQEKVQMKEESKAAVEMLQTQLKELSEEVAILCVDQETWKVEEQSLDSPLEEIQQLRNNIGKLK 2452
Cdd:PTZ00121 1560 AEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLK 1639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2453 VCLDADKKQQlhilEKLKESEHQADFLKDTVENLERELKLSGEnqEHVTLEAEKSKAEvETLKATVEEMDQnlrglqldl 2532
Cdd:PTZ00121 1640 KKEAEEKKKA----EELKKAEEENKIKAAEEAKKAEEDKKKAE--EAKKAEEDEKKAA-EALKKEAEEAKK--------- 1703
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2533 vnIRSDKEDLTKELQKEQSRVSELETLNSSFENLLREKEQEK-----VQMKEESKAAVEMLQKELEELNEkmaalgndqE 2607
Cdd:PTZ00121 1704 --AEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKkkaeeAKKDEEEKKKIAHLKKEEEKKAE---------E 1772
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 528980992 2608 TRKVKEQSLSSQVDSL-EHEKAQLLQDLDDAKSNYMILQSSVNDLIQEVEDGKQKLEKKDEEISILKSQTRDQEQLVSK 2685
Cdd:PTZ00121 1773 IRKEKEAVIEEELDEEdEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEK 1851
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
2359-2941 |
1.25e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 70.86 E-value: 1.25e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2359 DLTKELQKEQSRVSELETLNSSFENLLREKEQEKVQMKEEskaaVEMLQTQLKELSEEVAILcvdqetwKVEEQSLDSPL 2438
Cdd:PRK03918 169 EVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLRE----INEISSELPELREELEKL-------EKEVKELEELK 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2439 EEIQQLRNNIGKLKVCLDADKKQQLHILEKLKESEHQADFLKDTVENLErelKLSGENQEHVTLEAEKSK-----AEVET 2513
Cdd:PRK03918 238 EEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK---ELKEKAEEYIKLSEFYEEyldelREIEK 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2514 LKATVEEMDQNLRGLQLDLVNIRSDKEDLTKELQKEQSRVSELETLNSSFENLLREKEQEKVQMKEESKAAVEMLQKELE 2593
Cdd:PRK03918 315 RLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2594 ELNEKmaalgndQETRKVKEQSLSSQVDSLEHEKAQLLQDLDDAKS--------NYMILQSSVNDLIQEVEDGKQKLEKK 2665
Cdd:PRK03918 395 ELEKA-------KEEIEEEISKITARIGELKKEIKELKKAIEELKKakgkcpvcGRELTEEHRKELLEEYTAELKRIEKE 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2666 DEEISILKSQTRDQEQLVSKLSQMEGEQQLWKKQKADLENLMVELEqKIQVLQSKNDAlqDTLEALQNSSRNLEKELELT 2745
Cdd:PRK03918 468 LKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLK-KYNLEELEKKA--EEYEKLKEKLIKLKGEIKSL 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2746 KLEkmsfVEKVNTMTVKETELQKEIHAVIQKTVALKEEFSGEKNRLMEELNLMLEEVKSSKGQLKELMLENSELKKSLDC 2825
Cdd:PRK03918 545 KKE----LEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKE 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2826 VHKDRmEEQGKMRGEIAEYQLRLQEAENKHQALLLDTNKQHEMEIqtyREKLTSKEECLSSQKVEIDLLKSSKEELNNSL 2905
Cdd:PRK03918 621 LKKLE-EELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEEL---REEYLELSRELAGLRAELEELEKRREEIKKTL 696
|
570 580 590
....*....|....*....|....*....|....*.
gi 528980992 2906 KATTEILEELKKTKMEnLKHADKLKKENDRAQSKIK 2941
Cdd:PRK03918 697 EKLKEELEEREKAKKE-LEKLEKALERVEELREKVK 731
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
2191-2785 |
2.70e-11 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 69.76 E-value: 2.70e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2191 ELDTLLSSLKNLLEEKEREKIQTKEEAKSAVEMLQTQLRELTE--------EIAALCDDQETWKVEEQSLDSPAQEVQ-Q 2261
Cdd:pfam15921 228 ELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEqlisehevEITGLTEKASSARSQANSIQSQLEIIQeQ 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2262 LRNNIEKLKVHLDIDKKKQLQILEKLKESEHQADflkDTVENLERELKLSGEnqehvtlEAEKSKAEVETLKATVEKMDQ 2341
Cdd:pfam15921 308 ARNQNSMYMRQLSDLESTVSQLRSELREAKRMYE---DKIEELEKQLVLANS-------ELTEARTERDQFSQESGNLDD 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2342 NLRGLQLDLvnirsEKEDLTKELQKEQS-RVSELETLNSSFENLLREKEQEKVQMKEESKAAVEMLQTQLKELSEE--VA 2418
Cdd:pfam15921 378 QLQKLLADL-----HKREKELSLEKEQNkRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERqmAA 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2419 ILCVDQETWKVEEQS--LDSPLEEIQQLRNNIGKLKVCLDADKKQQLHILEKLKESEHQADFLKDTVENLERELKLSGEN 2496
Cdd:pfam15921 453 IQGKNESLEKVSSLTaqLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQE 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2497 QEHVTLEAE---KSKAEVETLKATVEEMDQNLRGLqldlvniRSDKEDLTKELQKEQSRVSELETLNSSFENLLREKE-- 2571
Cdd:pfam15921 533 LQHLKNEGDhlrNVQTECEALKLQMAEKDKVIEIL-------RQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRle 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2572 -QEKVQMKEESKAAVEMLQKELEELNEKMAALGNDQETRKVKEQSLSSQVDSLEHEKAQLLQDLDDAKSNYMILQSSVND 2650
Cdd:pfam15921 606 lQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRN 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2651 LIQEVEDGKQKLEKKdeeisiLKSQTRDQEQLVSKLSQMEGEQQLWKKqkadlenLMVELEQKIQVLQSKNDALQDTLEA 2730
Cdd:pfam15921 686 KSEEMETTTNKLKMQ------LKSAQSELEQTRNTLKSMEGSDGHAMK-------VAMGMQKQITAKRGQIDALQSKIQF 752
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 528980992 2731 LQNSSRNLEKELELTKLEKMSFVEKVNTMTVKETELQKEIHAVIQKTVALKEEFS 2785
Cdd:pfam15921 753 LEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVA 807
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2440-3008 |
4.83e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.20 E-value: 4.83e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2440 EIQQLRNNIGKLKVCLDADKKQQLHILEKLKESEHQADFLKDTVENLERELKLSGENQEHVTLEAEKSKAEVETLKATVE 2519
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2520 EMDQNLRGLQLDLVNIRSDKEDLTKELQKEQSRVSELEtlnssfenllrEKEQEKVQMKEESKAAVEMLQKELEELNEKM 2599
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAE-----------EELEEAEAELAEAEEALLEAEAELAEAEEEL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2600 AALGNDQETRKVKEQSLSSQVDSLEHEKAQLLQDLDDAKSNYMILQSSVNDLIQEVEDGKQKLEKKDEEisiLKSQTRDQ 2679
Cdd:COG1196 382 EELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE---EAELEEEE 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2680 EQLVSKLSQMEGEQQLWKKQKADLENLMVELEQKIQVLQSKNDALQDTLEALQNSSRNLEKELELTKLEKMSFVEKVNTM 2759
Cdd:COG1196 459 EALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEA 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2760 TVKETELQKEIHAVIQKTVALKEEFSGEKNRLMEELNLmLEEVKSSKGQLKELMLENSELKKSLDCVHKDRMEEQGKMRG 2839
Cdd:COG1196 539 ALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATF-LPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYV 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2840 EIAEYQLRLQEAENKHQALlldtnkqHEMEIQTYREKLTSKEECLSSQKVEIDLLKSSKEELNNSLKATTEILEELKKTK 2919
Cdd:COG1196 618 LGDTLLGRTLVAARLEAAL-------RRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAE 690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2920 MENLKHADKLKKENDRAQSKIKLLVKSCKQLEEEKVMLQKELSHLEAAQEKQRADTVVDANVDELITEMKELkETLEEKT 2999
Cdd:COG1196 691 EELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDL-EELEREL 769
|
....*....
gi 528980992 3000 KEADEYLDK 3008
Cdd:COG1196 770 ERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
280-1014 |
6.13e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.93 E-value: 6.13e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 280 LDQLKAQNQELRSKMSELELRLQGQEKEMKGQVNKLQELQLQLEKAKVELNEKEKVLNKNRDELVRTTSQYDQASAKCTA 359
Cdd:TIGR02168 262 LQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAE 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 360 LEQKLKKLTEDLSCQRQNAESARCSLEQKIKEKEKEFQEELSRQQRSFQTLDQEctqmkARLTQELQQAKNTYNILQAEL 439
Cdd:TIGR02168 342 LEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI-----ASLNNEIERLEARLERLEDRR 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 440 DKVTSVKQQIEKKLE-----EFKQNFSKTEQALQASQTKENELRRSSEEMKRENSLLKSQSEQRAREVCHLEEELKKAKQ 514
Cdd:TIGR02168 417 ERLQQEIEELLKKLEeaelkELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 515 CLSQSQNFAEEMKA--KNTSQETMLRD-LQEKINQQE--------------NSLTLEKLKLALADLEKQRDCSQD----L 573
Cdd:TIGR02168 497 LQENLEGFSEGVKAllKNQSGLSGILGvLSELISVDEgyeaaieaalggrlQAVVVENLNAAKKAIAFLKQNELGrvtfL 576
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 574 LKKREHHIEQLNEKLSKTERESEALLSALELKKKEYEELKEEKTLFS----------------------RWKSENEQLLN 631
Cdd:TIGR02168 577 PLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGgvlvvddldnalelakklrpgyRIVTLDGDLVR 656
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 632 -------QMESEKESLQSKVNHLETClkTQQIKSHEynERVRTLEMERENLNVEIRNLQNVIDSKTAEAETQKRAYGELQ 704
Cdd:TIGR02168 657 pggvitgGSAKTNSSILERRREIEEL--EEKIEELE--EKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALR 732
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 705 QKAEfsdqKHEKEIENMCLKISHLTGQVEDLEHKLQLLSSEIMDKDQRYQDLHAESESLRDLLKSRDSSAMTIEphQRSR 784
Cdd:TIGR02168 733 KDLA----RLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR--EALD 806
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 785 LAFEQQSALNNSFANIIGEQESVPSERSRCHVATDQSPKSSSMLQNRVVSLEFSLESQKQMNSDLQKQCEELVQIKGEIE 864
Cdd:TIGR02168 807 ELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLE 886
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 865 ENLMKAEQMHQSF---VAETSQRISKLQEDTSVHQNVVAETLAALESKERELQLLNEKLETEQAETGELKKNNHLLQESl 941
Cdd:TIGR02168 887 EALALLRSELEELseeLRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIED- 965
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 528980992 942 kELQFLSETLSLEKKELNSIISLNKKDIEELTQENGTLKEinatLTQEKMNLLQKTESFSNCIDERDRSISEL 1014
Cdd:TIGR02168 966 -DEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDF----LTAQKEDLTEAKETLEEAIEEIDREARER 1033
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1983-2787 |
6.71e-11 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 68.71 E-value: 6.71e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1983 IRELESHQSECLHLQEWLQSLEKDSQALSLVRSELENQIEQlnkekdslvweSESLQTKLSESEHEKLAITKALEAALME 2062
Cdd:pfam12128 233 IAGIMKIRPEFTKLQQEFNTLESAELRLSHLHFGYKSDETL-----------IASRQEERQETSAELNQLLRTLDDQWKE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2063 K-GEVAVRLSSTQEEVHQLRKGIEKLRVRIEADEKKQLhvsEKLKESERRNDSLQDKVETLERELQMAEENQELVildae 2141
Cdd:pfam12128 302 KrDELNGELSAADAAVAKDRSELEALEDQHGAFLDADI---ETAAADQEQLPSWQSELENLEERLKALTGKHQDV----- 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2142 ncKAEVETLKTQIELMTER-LKDLELDLVTIRSEKENLLKQLQEK-QGQASELDTLLSSLKNLLEEKEREKIQTKEEAK- 2218
Cdd:pfam12128 374 --TAKYNRRRSKIKEQNNRdIAGIKDKLAKIREARDRQLAVAEDDlQALESELREQLEAGKLEFNEEEYRLKSRLGELKl 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2219 -----SAVEMLQTQLRELTEEIAALCDDQETWKVEEQSLDSpaqEVQQLRNNIEKLKVHLDIDKKKQLQILEKLKESEHQ 2293
Cdd:pfam12128 452 rlnqaTATPELLLQLENFDERIERAREEQEAANAEVERLQS---ELRQARKRRDQASEALRQASRRLEERQSALDELELQ 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2294 ADFLKDT-VENLERELKLSGENQEHVTLEAEKSKAEVE-TLKATVEKMDQNLRGLQLDLVNI------------RSEKED 2359
Cdd:pfam12128 529 LFPQAGTlLHFLRKEAPDWEQSIGKVISPELLHRTDLDpEVWDGSVGGELNLYGVKLDLKRIdvpewaaseeelRERLDK 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2360 LTKELQKEQSRVSELE----------------------TLNSSFENLLR---EKEQEKVQMKEESKAAVEMLQTQLKELS 2414
Cdd:pfam12128 609 AEEALQSAREKQAAAEeqlvqangelekasreetfartALKNARLDLRRlfdEKQSEKDKKNKALAERKDSANERLNSLE 688
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2415 EEVAILCVDQETWKVE--EQSLDSPLEEIQQLRNNIGKLKVCLDADKKqqlhilEKLKESEHQADFLKDTVENLERELKL 2492
Cdd:pfam12128 689 AQLKQLDKKHQAWLEEqkEQKREARTEKQAYWQVVEGALDAQLALLKA------AIAARRSGAKAELKALETWYKRDLAS 762
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2493 SGENQEHVTleaeKSKAEVETLKATVEEMDQN----LRGLQLDLVNIRSDKEDLTKELQKEQSRVSELEtlnssfENLLR 2568
Cdd:pfam12128 763 LGVDPDVIA----KLKREIRTLERKIERIAVRrqevLRYFDWYQETWLQRRPRLATQLSNIERAISELQ------QQLAR 832
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2569 EKEQEKVQMKE---ESKAavemLQKELEELNEKMAALgnDQETRKVKEQSLSSQVDSLEHEKAQLLQDLDDAKSnymILQ 2645
Cdd:pfam12128 833 LIADTKLRRAKlemERKA----SEKQQVRLSENLRGL--RCEMSKLATLKEDANSEQAQGSIGERLAQLEDLKL---KRD 903
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2646 SSVNDLIQEVEDGKQKLEKKD-EEISILKSQTRDQEQLVSKLSQMEGEQQLWKKQKADLENLMVE-----LEQKIQVLQS 2719
Cdd:pfam12128 904 YLSESVKKYVEHFKNVIADHSgSGLAETWESLREEDHYQNDKGIRLLDYRKLVPYLEQWFDVRVPqsimvLREQVSILGV 983
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 528980992 2720 KNDALQDTLEA----LQNSSRNLEKEL-ELTKLEKMSFVEKVNTMTVKETELQKEIHAVIQKTVALKEEFSGE 2787
Cdd:pfam12128 984 DLTEFYDVLADfdrrIASFSRELQREVgEEAFFEGVSESAVRIRSKVSELEYWPELRVFVKAFRLWKSDGFGE 1056
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2259-2802 |
6.89e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.42 E-value: 6.89e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2259 VQQLRNNIEKLK-----------VHLDIDKKKQLQILEKLKESEHQADFLKDTVENLERELklsgenqEHVTLEAEKSKA 2327
Cdd:COG1196 195 LGELERQLEPLErqaekaeryreLKEELKELEAELLLLKLRELEAELEELEAELEELEAEL-------EELEAELAELEA 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2328 EVETLKATVEKMDQNLRGLQLDLVNIRSEKEDLTKELQKEQSRVSELEtlnssfENLLREKEQEkvqmkEESKAAVEMLQ 2407
Cdd:COG1196 268 ELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELE------ERLEELEEEL-----AELEEELEELE 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2408 TQLKELSEEVAILCVDQETWKVEEQSLDSPLEEIQQLRNNIGKLkvcLDADKKQQLHILEKLKESEHQADFLKDTVENLE 2487
Cdd:COG1196 337 EELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE---LEELAEELLEALRAAAELAAQLEELEEAEEALL 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2488 RELKLSGENQEHVTLEAEKSKAEVETLKATVEEMDQNLRGLQLDLVNIRSDKEDLTKELQKEQSRVSELETLNSSFENLL 2567
Cdd:COG1196 414 ERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARL 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2568 REKEQEKVQMKEESKAAVEMLQKEL-----------------------EELNEKMAALGNDQETRKVKEQSLSSQVDSLE 2624
Cdd:COG1196 494 LLLLEAEADYEGFLEGVKAALLLAGlrglagavavligveaayeaaleAALAAALQNIVVEDDEVAAAAIEYLKAAKAGR 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2625 HEKAQLLQDLDDAKSNYMILQSSVNDLIQEVE-DGKQKLEKKDEEISILKSQTRDQEQLVSKLSQMEGEQQLWKKQKADL 2703
Cdd:COG1196 574 ATFLPLDKIRARAALAAALARGAIGAAVDLVAsDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEG 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2704 ENLMVELEQKIQVLQSKNDALQDTLEALQNSSRNLEKELELTKLEKMSFVEKVNTMTVKETELQKEIHAVIQKTVALKEE 2783
Cdd:COG1196 654 EGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAE 733
|
570
....*....|....*....
gi 528980992 2784 FSGEKNRLMEELNLMLEEV 2802
Cdd:COG1196 734 REELLEELLEEEELLEEEA 752
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
2204-3027 |
8.36e-11 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 68.46 E-value: 8.36e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2204 EEKEREKIQTKEEAKSAVEMLQTQLRELTEEIAAL-CDDQETWKVEEQSLDSPAQEVQQLRNNIEKLKVHLDIDKKKQLQ 2282
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQELkLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQEL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2283 ILEKLKESEHQADFLKDTVENLERELKLSGEN---QEHVTLEAEKSKAEVETLKATVEKMDQNLRGLQLDLVNIRSEKED 2359
Cdd:pfam02463 246 LRDEQEEIESSKQEIEKEEEKLAQVLKENKEEekeKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKK 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2360 LTKELQKEQSRVSELETLNSSFENLLREKEQEKVQMKEESKAAVEMLQTQLKELSEEVAILcvdQETWKVEEQSLDSPLE 2439
Cdd:pfam02463 326 AEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERL---SSAAKLKEEELELKSE 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2440 EIQQLRNNIGKLKVCLDADKKQQLHILEKLKESEHQADFLKDTVENLERELKLSGENQEHVTLEAEKSKAEVETLKATVE 2519
Cdd:pfam02463 403 EEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKL 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2520 EMDQNLRGLQLDLVNIRSDKEDLTKELQKEQSRVSELETLNSSFENLLREKEQEKVQMKEESKAAVEMlqkeLEELNEKM 2599
Cdd:pfam02463 483 QEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVI----VEVSATAD 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2600 AALGNDQETRKVKEQSLSSQVDSLEHEKAQLLQDLDDAKSNYMILQSSVNDLIQEVEDGKQKLEKKDEEISILKSQTRDQ 2679
Cdd:pfam02463 559 EVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLK 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2680 EQLVSKLSQMegeqqlwKKQKADLENLMVELEQKIQVLQSKnDALQDTLEALQNSSRNLEKELELTKLEKMSFVEKVNTM 2759
Cdd:pfam02463 639 ESAKAKESGL-------RKGVSLEEGLAEKSEVKASLSELT-KELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKE 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2760 TVKETELQKEIHAVIQKTVALKEEFSGEKNRLMEELNLMLEEVKSSKGQLKELMLENSELkksldcvhkdrmEEQGKMRG 2839
Cdd:pfam02463 711 ELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELS------------LKEKELAE 778
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2840 EIAEYQLRLQEAENKHQALLLDTNKQHEMEIQTYREKLTSKEECLSSQKVEIDLLKSSKEELN--NSLKATTEILEELKK 2917
Cdd:pfam02463 779 EREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALElkEEQKLEKLAEEELER 858
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2918 TKMENLKHADKLKKENDRAQSKIKLLVKSCKQLEEEKVMLQKELSHLEAAQEKQRADTVVDANVDELITEMKELKETLEE 2997
Cdd:pfam02463 859 LEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPE 938
|
810 820 830
....*....|....*....|....*....|
gi 528980992 2998 KTKEADEYLDKYCSLLISHEKLEKAKEMLE 3027
Cdd:pfam02463 939 ELLLEEADEKEKEENNKEEEEERNKRLLLA 968
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
401-975 |
8.73e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.04 E-value: 8.73e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 401 SRQQRSFQTLDQECTQMKARL--------TQELQQAKNTYNILQAELDKVTSVKQQIEKKLEEFKQNFSKTEQALQASQT 472
Cdd:COG1196 209 AEKAERYRELKEELKELEAELlllklrelEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQA 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 473 KENELRRSSEEMKRENSLLKSQSEQRAREVCHLEEELKKAKQCLSQSQNFAEEMKAKNTSQETMLRDLQEKINQQENSLt 552
Cdd:COG1196 289 EEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL- 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 553 LEKLKLALADLEKQRDCSQDLLKKREHHIEQLNEKLSKTERESEALLSALELKKKeyeelkeektlfsrwKSENEQLLNQ 632
Cdd:COG1196 368 LEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEE---------------LEELEEALAE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 633 MESEKESLQSKVNHLETCLKTQQIKSHEYNERVRTLEMERENLNVEIRNLQNVIDSKTAEAETQKRAYGELQQKAEFSDQ 712
Cdd:COG1196 433 LEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKA 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 713 KHEKEIENMCLKISHLTGQVEDLEHKLQLLSSEIMDKDQRYQDLHAESEsLRDLLKSRDSSAMTIEPHQRSRLAFEQQSA 792
Cdd:COG1196 513 ALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAA-AIEYLKAAKAGRATFLPLDKIRARAALAAA 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 793 LNNSFAN--IIGEQESVPSERSRCHVATDQS------PKSSSMLQNRVVSLEFSLESQKQMNSDLQKQCEELVQIKGEIE 864
Cdd:COG1196 592 LARGAIGaaVDLVASDLREADARYYVLGDTLlgrtlvAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELL 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 865 ENLMKAEQMHQSFVAETSQRISKLQEDTsvhqnvVAETLAALESKERELQLLNEKLETEQAETGELKKNNHLLQESLKEL 944
Cdd:COG1196 672 AALLEAEAELEELAERLAEEELELEEAL------LAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEE 745
|
570 580 590
....*....|....*....|....*....|.
gi 528980992 945 QFLSETLSLEKKELNSIISLnKKDIEELTQE 975
Cdd:COG1196 746 ELLEEEALEELPEPPDLEEL-ERELERLERE 775
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
16-800 |
8.74e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.16 E-value: 8.74e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 16 ALQKIQELEGQLDKLKKERQQRQFQLETLEAALQKQKQKVENEKTEGANLKRENQSLMEICENLEKTKQKISHELQVKES 95
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 96 QVNFQEGQLNSSKKQIEKLEQELKRCKSELERSQQAAQSADVSLNSCLTPQKIFAtpltpsqyysgSKYEDLKEKYNKEV 175
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELE-----------AELEELESRLEELE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 176 EERKRLEAEVKALQAKKASQTIPQSTMNHRdIARHQASSSVFSWQQEKTPSRLSSNTLKTPVRRdfSASHFSGEQEVTPS 255
Cdd:TIGR02168 379 EQLETLRSKVAQLELQIASLNNEIERLEAR-LERLEDRRERLQQEIEELLKKLEEAELKELQAE--LEELEEELEELQEE 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 256 RSTLQIGKTDANSSFCDNSSnshLLDQLKAQNQELRSKMSELELRLQGQEKEMKGQVNKLQELQ-----LQLEKAKVELN 330
Cdd:TIGR02168 456 LERLEEALEELREELEEAEQ---ALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSglsgiLGVLSELISVD 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 331 EK-----EKVLNKNRDELV-RTTSQYDQA--------SAKCTALEQKLKKLTEDLSCQRQNAESARCSLEQKIKEKEKEF 396
Cdd:TIGR02168 533 EGyeaaiEAALGGRLQAVVvENLNAAKKAiaflkqneLGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDP 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 397 Q------------------------EELSRQQRSFQTLDQE-------CTQMKARLTQELQQAKNTYNILQAELDKVTSV 445
Cdd:TIGR02168 613 KlrkalsyllggvlvvddldnalelAKKLRPGYRIVTLDGDlvrpggvITGGSAKTNSSILERRREIEELEEKIEELEEK 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 446 KQQIEKKLEEFKQNFSKTEQALQASQTKENELRRSSEEMKRENSLLKSQSEQRAREVCHLEEELKKAKQCLSQSQNFAEE 525
Cdd:TIGR02168 693 IAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEE 772
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 526 MKAKNTSQETMLRDLQEKINQQENSLTLEK------------LKLALADLEKQRDCSQDLLKKREHHIEQLNEKLSKTER 593
Cdd:TIGR02168 773 AEEELAEAEAEIEELEAQIEQLKEELKALRealdelraeltlLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSE 852
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 594 ESEALLSALELKKKEYEELKEEKTLFSRWKSENEQLLNQMESEKESLQSKVNHLETCLKTQQIKSHEYNERVRTLEMERE 673
Cdd:TIGR02168 853 DIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLE 932
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 674 NLNVEIRNLQnviDSKTAEAETQKRAYGELQQKAEFSDQKHEKEIENMCLKISHLtGQVedlehklQLLS-SEIMDKDQR 752
Cdd:TIGR02168 933 GLEVRIDNLQ---ERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL-GPV-------NLAAiEEYEELKER 1001
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|
gi 528980992 753 YQDLHAESESLRDLLKSRDS--SAMTIEPHQRSRLAFEQqsaLNNSFANI 800
Cdd:TIGR02168 1002 YDFLTAQKEDLTEAKETLEEaiEEIDREARERFKDTFDQ---VNENFQRV 1048
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2137-2692 |
9.70e-11 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 68.02 E-value: 9.70e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2137 ILDAENCKAEVETLKTQIElmteRLKDLELDLVTIRsEKENLLKQL-------QEKQGQASELDTLLSSLK--------N 2201
Cdd:COG4913 217 MLEEPDTFEAADALVEHFD----DLERAHEALEDAR-EQIELLEPIrelaeryAAARERLAELEYLRAALRlwfaqrrlE 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2202 LLEEKEREKIQTKEEAKSAVEMLQTQLRELTEEIAALcddqetwkvEEQSLDSPAQEVQQLRNNIEKLKVHLDidkkkql 2281
Cdd:COG4913 292 LLEAELEELRAELARLEAELERLEARLDALREELDEL---------EAQIRGNGGDRLEQLEREIERLERELE------- 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2282 QILEKLKESEHQADFLKDTVENLERELKlsgenqehvtleaekskAEVETLKATVEKMDQNLRGLQLDLVNIRSEKEDLT 2361
Cdd:COG4913 356 ERERRRARLEALLAALGLPLPASAEEFA-----------------ALRAEAAALLEALEEELEALEEALAEAEAALRDLR 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2362 KELQKEQSRVSELETLNSSFEnllrekeqekvqmkEESKAAVEMLQTQLKELSEEVAILC------VDQETWK------- 2428
Cdd:COG4913 419 RELRELEAEIASLERRKSNIP--------------ARLLALRDALAEALGLDEAELPFVGelievrPEEERWRgaiervl 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2429 --------VEEQSLDSPLEEIQQLRN----NIGKLKVCLDADKKQQLH---ILEKLKESEHQA-DFLK------------ 2480
Cdd:COG4913 485 ggfaltllVPPEHYAAALRWVNRLHLrgrlVYERVRTGLPDPERPRLDpdsLAGKLDFKPHPFrAWLEaelgrrfdyvcv 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2481 DTVENLERE---------LKLSGENQEHvtleaEKSKAEVETL------KATVEEMDQNLRGLQLDLVNIRSDKEDLTKE 2545
Cdd:COG4913 565 DSPEELRRHpraitragqVKGNGTRHEK-----DDRRRIRSRYvlgfdnRAKLAALEAELAELEEELAEAEERLEALEAE 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2546 LQKEQSRVSELETL-NSSFENL--------LREKEQEKVQMkEESKAAVEMLQKELEELNEKMAALGNDQETRKVKEQSL 2616
Cdd:COG4913 640 LDALQERREALQRLaEYSWDEIdvasaereIAELEAELERL-DASSDDLAALEEQLEELEAELEELEEELDELKGEIGRL 718
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 528980992 2617 SSQVDSLEHEKAQLLQDLDDAksnymiLQSSVNDLIQEVEDGKQKLEKKDEEISILKSQTRDQEQLVSKLSQMEGE 2692
Cdd:COG4913 719 EKELEQAEEELDELQDRLEAA------EDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEE 788
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
2175-2953 |
2.40e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 66.68 E-value: 2.40e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2175 KENLLKQLQEKQGQASELDTLLSSlKNLLEEKEREKIqtkeeaKSAVEMLQTQLRELTEEIAALCDDQEtwkveeqsldS 2254
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNE-SNELHEKQKFYL------RQSVIDLQTKLQEMQMERDAMADIRR----------R 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2255 PAQEVQQLRNNIEKlKVHldidkkkQLQILEKLKEsehqaDFLKDTVENLE--RELKLSGENQEHvtleaEKSKAEVETL 2332
Cdd:pfam15921 136 ESQSQEDLRNQLQN-TVH-------ELEAAKCLKE-----DMLEDSNTQIEqlRKMMLSHEGVLQ-----EIRSILVDFE 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2333 KATVEKMDQNLrglQLDLVNIRSEKEDLTKELQkeqsrvsELETLNSSFENLLREKEQEKVQMKEESKAAVEMLQTQ--- 2409
Cdd:pfam15921 198 EASGKKIYEHD---SMSTMHFRSLGSAISKILR-------ELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQhqd 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2410 -----LKELSEEVAILCVDQETWKVEEQSLDSPLEEIQQLRNNIGKLKVCLDADKKQQLHILE-KLKESEHQADflkDTV 2483
Cdd:pfam15921 268 rieqlISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRsELREAKRMYE---DKI 344
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2484 ENLERELKLSGEnqehvtlEAEKSKAEVETLKATVEEMDQNLRGLQLDLvnirsDKEDLTKELQKEQS-RVSELETLNSS 2562
Cdd:pfam15921 345 EELEKQLVLANS-------ELTEARTERDQFSQESGNLDDQLQKLLADL-----HKREKELSLEKEQNkRLWDRDTGNSI 412
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2563 FENLLREKEQEKVQMKEESKAAVEMLQKELE-ELNEKMAALGNDQETRKvKEQSLSSQVDSLEHEKAQLLQDLDDAKSNY 2641
Cdd:pfam15921 413 TIDHLRRELDDRNMEVQRLEALLKAMKSECQgQMERQMAAIQGKNESLE-KVSSLTAQLESTKEMLRKVVEELTAKKMTL 491
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2642 MILQSSVNDLIQEVEDGKQKLEKKDEEISILKSQTRDQEQlvsKLSQMEGEQQLWKKQKADLENLMVELEQKIQVLQSKN 2721
Cdd:pfam15921 492 ESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQ---ELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILR 568
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2722 DALQDTLE----------ALQNSSRNLEKELELTKLEKMSFVEKVNTMTVKETELQKEIHAVIQKTVAL----KEEFSGE 2787
Cdd:pfam15921 569 QQIENMTQlvgqhgrtagAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLvnagSERLRAV 648
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2788 KNrLMEELNLMLEEVKSSKGQLKELMLENSELKKSLDCVHKDRMEEQGKMRGEIAEYQLRLQEAENKHQAllLDTNKQHE 2867
Cdd:pfam15921 649 KD-IKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKS--MEGSDGHA 725
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2868 MEIQTYREKLtskeecLSSQKVEIDLLKSSKEELNNSLKATTEILEELKKTKMENLKHADKLKKENDRAQSKIKLLVKSC 2947
Cdd:pfam15921 726 MKVAMGMQKQ------ITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQE 799
|
....*.
gi 528980992 2948 KQLEEE 2953
Cdd:pfam15921 800 RRLKEK 805
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
280-598 |
3.36e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 66.24 E-value: 3.36e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 280 LDQLKAQNQELRSKMSELELRLQGQEKEmkgQVNKLQELQLQLEKAKVELNEKEKVLNKNRDELVRTTSQYDqasakctA 359
Cdd:TIGR02169 179 LEEVEENIERLDLIIDEKRQQLERLRRE---REKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLA-------S 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 360 LEQKLKKLTEDLSCQRQNAESARCSLEQKIKEKEKEFQEELSRQQRSFQTLDQECTQMKARLT---QELQQAKNTYNILQ 436
Cdd:TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAekeRELEDAEERLAKLE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 437 AELDKVTSVKQQIEKKLEEFKQNFSKTEQALQASQTKENELRRSSEEM--------------KRENSLLKSQSEQRAREV 502
Cdd:TIGR02169 329 AEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVdkefaetrdelkdyREKLEKLKREINELKREL 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 503 CHLEEELKKAKQCLSQSQNFAEEMKAKNTSQETMLRDLQEKINQQEnsltlEKLKLALADLEKQRdcsqDLLKKREHHIE 582
Cdd:TIGR02169 409 DRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQE-----WKLEQLAADLSKYE----QELYDLKEEYD 479
|
330
....*....|....*.
gi 528980992 583 QLNEKLSKTERESEAL 598
Cdd:TIGR02169 480 RVEKELSKLQRELAEA 495
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
300-1123 |
3.45e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.23 E-value: 3.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 300 RLQGQEKEMKGQVNKLQelqLQLEKA------KVELNEKEKVLNKNR-----DELVRTTSQYDQASAKCTALEQKLKKLT 368
Cdd:TIGR02168 190 RLEDILNELERQLKSLE---RQAEKAerykelKAELRELELALLVLRleelrEELEELQEELKEAEEELEELTAELQELE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 369 EDLScqrqnaesarcsleqKIKEKEKEFQEELSRQQRSFQTLDQE---CTQMKARLTQELQQAKNTYNILQAELDKVTSV 445
Cdd:TIGR02168 267 EKLE---------------ELRLEVSELEEEIEELQKELYALANEisrLEQQKQILRERLANLERQLEELEAQLEELESK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 446 KQQIEKKLEEFKQNFSKTEQALQASQTKENELRRSSEEMKRENSLLKSQSEQRAREVCHLEEELKKAK---QCLSQSQNF 522
Cdd:TIGR02168 332 LDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNneiERLEARLER 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 523 AEEMKAKNTSQETMLRDLQEKINQQENSLTLEKLKLALADLEKQRDCSQDLLKKREHHIEQLNEKLSKTERESEALLSAL 602
Cdd:TIGR02168 412 LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARL 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 603 ELKKKEYEELKEEKTLFSRWKSENEQ-------LLNQMESEKE-------SLQSKVNHLETCLKTQQIKSHEYNERVRTl 668
Cdd:TIGR02168 492 DSLERLQENLEGFSEGVKALLKNQSGlsgilgvLSELISVDEGyeaaieaALGGRLQAVVVENLNAAKKAIAFLKQNEL- 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 669 emERENLNVEIRNLQNVIDSKTAEAETQKRAYGELQQKAEFSDQKHEKEIENMclkiSHLTGQVEDLEHKLQLLSSeiMD 748
Cdd:TIGR02168 571 --GRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYL----LGGVLVVDDLDNALELAKK--LR 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 749 KDQRYQDLHAESESLRDLL--KSRDSSAMTIEPHQRSRLAFEQQSALNNSFANI-------IGEQESVPSERSRCHVATD 819
Cdd:TIGR02168 643 PGYRIVTLDGDLVRPGGVItgGSAKTNSSILERRREIEELEEKIEELEEKIAELekalaelRKELEELEEELEQLRKELE 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 820 QSPKSSSMLQNRVVSLEFSLESQKQMNSDLQKQCEELVQIKGEIEENLMKAEQMhqsfVAETSQRISKLQEDTSVHQNVV 899
Cdd:TIGR02168 723 ELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEE----LAEAEAEIEELEAQIEQLKEEL 798
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 900 AETLAALESKERELQLLNEKLETEQAETGELKKNNHLLQESLKELQFLSETLSLEKKELNSIISLNKKDIEELTQEngtl 979
Cdd:TIGR02168 799 KALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESE---- 874
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 980 keinatltqekmnllqktesfsnciderdrsISELSNQYKQERLTLLQRCEEtgnaFQDLSEKYKAVQEKNSKLECLLSE 1059
Cdd:TIGR02168 875 -------------------------------LEALLNERASLEEALALLRSE----LEELSEELRELESKRSELRRELEE 919
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 528980992 1060 CTGVCEDRKNELGQLKETFAREHQAFVSQLALAEERNQNLIVELETVQQALQSEITDIQNSSKR 1123
Cdd:TIGR02168 920 LREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
2541-3051 |
5.90e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 65.47 E-value: 5.90e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2541 DLTKELQKEQSRVSELETLNSSFENLLREKEQEKVQMKEEskaaVEMLQKELEELNEKMAALgndqETRKVKEQSLSSQV 2620
Cdd:PRK03918 169 EVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLRE----INEISSELPELREELEKL----EKEVKELEELKEEI 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2621 DSLEHEKAQLLQDLDDAKSNYMILQSSVNDLIQEVEDgkqkLEKKDEEISILKSQTRDQEQLVSKLSQMEGEQQLWKKQK 2700
Cdd:PRK03918 241 EELEKELESLEGSKRKLEEKIRELEERIEELKKEIEE----LEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2701 ADLENLMVELEQKIQVLQSKNDALQDTlealqnssRNLEKELELTKLEKMSFVEKVNTMTVKETELQ----KEIHAVIQK 2776
Cdd:PRK03918 317 SRLEEEINGIEERIKELEEKEERLEEL--------KKKLKELEKRLEELEERHELYEEAKAKKEELErlkkRLTGLTPEK 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2777 TVALKEEFSGEKNRLMEELNLMLEEVKSSKGQLKELMLENSELKKSLDCVHKDRMEEQGKMRGEI-AEYQLRLQEAENKH 2855
Cdd:PRK03918 389 LEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELlEEYTAELKRIEKEL 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2856 QALlldTNKQHEMEIQTYR-EKLTSKEECLSSQKVEIDLLKSSKEELNN----SLKATTEILEELKKTKMENLKHADKLK 2930
Cdd:PRK03918 469 KEI---EEKERKLRKELRElEKVLKKESELIKLKELAEQLKELEEKLKKynleELEKKAEEYEKLKEKLIKLKGEIKSLK 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2931 KENDRAQ---SKIKLLVKSCKQLEEEKVMLQKELSHL--------------------------EAAQEKQRADTVVDANV 2981
Cdd:PRK03918 546 KELEKLEelkKKLAELEKKLDELEEELAELLKELEELgfesveeleerlkelepfyneylelkDAEKELEREEKELKKLE 625
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 528980992 2982 DELITEMKELKET---LEEKTKEADEYLDKYCSLliSHEKLEKAKEMLETQVARLSSQQSKLNLRRSPLVNSL 3051
Cdd:PRK03918 626 EELDKAFEELAETekrLEELRKELEELEKKYSEE--EYEELREEYLELSRELAGLRAELEELEKRREEIKKTL 696
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1955-2417 |
7.94e-10 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 64.79 E-value: 7.94e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1955 RDQLRGELDTLSKENQELDQMS----EKMKEKIRELESHQSECLHLQEWLQSLEKDSQALSLVRSELENQIEQLNKEKD- 2029
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNlkelKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQl 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2030 -SLVWESESLQTKLSESEHEKlaitKALEAALMEKGEVAVRLSSTQEEVHQLRKGIEKLRVRIEADEKKQLH-VSEKLKE 2107
Cdd:COG4717 128 lPLYQELEALEAELAELPERL----EELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQdLAEELEE 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2108 SERRNDSLQDKVETLERELQMAEENQELVILDAENCKAEVETLKTQIELMTERLkdleldLVTIRSEKENLLKQLQEKQG 2187
Cdd:COG4717 204 LQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAA------LLALLGLGGSLLSLILTIAG 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2188 QASELDTLLSSLKNLLEEKEREKIQTKEEAKSAVEMLQTQLRELTEEIAALCDDQETWKVEEQSLDSPAQEVQQLRNNIE 2267
Cdd:COG4717 278 VLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAE 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2268 KLKVHLDID--KKKQLQILEKLKESEHQAdfLKDTVENLERELKLSGENQEHVT-LEAEKSKAEVETLKATVEKMDQNLR 2344
Cdd:COG4717 358 ELEEELQLEelEQEIAALLAEAGVEDEEE--LRAALEQAEEYQELKEELEELEEqLEELLGELEELLEALDEEELEEELE 435
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 528980992 2345 GLQLDLVNIRSEKEDLTKELQKEQSRVSELETlNSSFENLLREKEQEKVQMKEESK--AAVEMLQTQLKELSEEV 2417
Cdd:COG4717 436 ELEEELEELEEELEELREELAELEAELEQLEE-DGELAELLQELEELKAELRELAEewAALKLALELLEEAREEY 509
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2092-3004 |
1.02e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 64.78 E-value: 1.02e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2092 EADEKKQLHVSEKLKESERRNDSLQDK----VETLERELQMAEENQElvildAENCKAEVETLKTQIELMTERLKDLEld 2167
Cdd:PTZ00121 1059 KAEAKAHVGQDEGLKPSYKDFDFDAKEdnraDEATEEAFGKAEEAKK-----TETGKAEEARKAEEAKKKAEDARKAE-- 1131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2168 lvtiRSEKENLLKQLQEkqGQASELDTLLSSLKNLLEEKEREKIQTKEEAKSAVEMLQTQLRELTEEIAalcddqetwKV 2247
Cdd:PTZ00121 1132 ----EARKAEDARKAEE--ARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELR---------KA 1196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2248 EEQSLDSPAQEVQQLRNnIEKLKVHLDIDKKKQLQILEKLKESEHQADfLKDTVENLERELKLSGENQEHVTLEAEKSKA 2327
Cdd:PTZ00121 1197 EDARKAEAARKAEEERK-AEEARKAEDAKKAEAVKKAEEAKKDAEEAK-KAEEERNNEEIRKFEEARMAHFARRQAAIKA 1274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2328 EVETLKATVEKMDQNLRGLQLDlvniRSEKEDLTKELQKEQSRVSELETLNSSFENL------LREKEQEKVQMKEESKA 2401
Cdd:PTZ00121 1275 EEARKADELKKAEEKKKADEAK----KAEEKKKADEAKKKAEEAKKADEAKKKAEEAkkkadaAKKKAEEAKKAAEAAKA 1350
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2402 AVEMLQTQLKELSEEVAILCVDQETWKVEEQSLDSPLEEIQQLRnnigKLKVCLDADKKQQLHiLEKLKESEHQADFLKD 2481
Cdd:PTZ00121 1351 EAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAD----EAKKKAEEDKKKADE-LKKAAAAKKKADEAKK 1425
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2482 TVENLERELKLSGENQEHVTLEAEKSKAE----VETLKATVEEmdqnlrglqldlvnirSDKEDLTKELQKEQSRVSELE 2557
Cdd:PTZ00121 1426 KAEEKKKADEAKKKAEEAKKADEAKKKAEeakkAEEAKKKAEE----------------AKKADEAKKKAEEAKKADEAK 1489
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2558 TLNSSFE---NLLREKEQEKVQMKEESKAAVEMLQKELEELNEKMAAlgndQETRKVKEQSLSSQVDSLEH-EKAQLLQD 2633
Cdd:PTZ00121 1490 KKAEEAKkkaDEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKA----DEAKKAEEKKKADELKKAEElKKAEEKKK 1565
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2634 LDDAKsnymilqssvndliQEVEDGKQKLEKKDEEISILKSQTRDQEQLVSKLSQMEGEQQlwkkQKADLENLMVELEQK 2713
Cdd:PTZ00121 1566 AEEAK--------------KAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEA----KKAEEAKIKAEELKK 1627
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2714 IQVLQSKNDALQDTLEALQNSSRNLEKELELTKLEKMSFVEKVNTMTVKETELQKEIHAVIQKTVALKEEfsGEKNRLME 2793
Cdd:PTZ00121 1628 AEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKE--AEEAKKAE 1705
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2794 ELNLMLEEVKSSKGQLKELMLENSELKKSLDcvhkdRMEEQGKMRGEiaeyQLRLQEAENKHQALLLDTNKQHEMEIQTY 2873
Cdd:PTZ00121 1706 ELKKKEAEEKKKAEELKKAEEENKIKAEEAK-----KEAEEDKKKAE----EAKKDEEEKKKIAHLKKEEEKKAEEIRKE 1776
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2874 REKLTSKEECLSSQKVEIDLLKSSKEELNNSlkatteileelkktkmENLKHADKlkKENDRAQSKIKLLVKSCKQLEEE 2953
Cdd:PTZ00121 1777 KEAVIEEELDEEDEKRRMEVDKKIKDIFDNF----------------ANIIEGGK--EGNLVINDSKEMEDSAIKEVADS 1838
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|.
gi 528980992 2954 KVMLQKELSHLEAAQEKQRADTVVDANVDELITEMKELKETLEEKTKEADE 3004
Cdd:PTZ00121 1839 KNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADE 1889
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
296-1141 |
1.35e-09 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 64.22 E-value: 1.35e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 296 ELELRLQGQEKEMKGQVNKLQELQLQLE----KAKVELNEKEKVLNKNRDELVRTTSQYDQASAKCTALEQKLKKLTEDL 371
Cdd:pfam02463 167 LKRKKKEALKKLIEETENLAELIIDLEElklqELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 372 SCQRQ--NAESARCSLEQKIKEKEKEFQEELSRQQRSFQTLDQECTQMKARLTQELQQAKNTYNILQAELDKVTSVKQQI 449
Cdd:pfam02463 247 RDEQEeiESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 450 EKKLEEFKQNFSKTEQALQASQTKENELRRSSEEMKRENSLLKSQSEQRAREVCHLEEELKKAKQCLSQSQNFAEEMKAK 529
Cdd:pfam02463 327 EKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 530 NTSQ---ETMLRDLQEKINQQENSLTLEKLKLALADLEKQRDCSQDLLKKREHHIEQLNEKL---SKTERESEALLSALE 603
Cdd:pfam02463 407 AQLLlelARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKkseDLLKETQLVKLQEQL 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 604 LKKKEYEELKEEKTLFSRWKSENEQLLNQMESEKESLQSKVNHLETCLKTQQIKSHEYNERVRTLEMERENLNVEIRNLQ 683
Cdd:pfam02463 487 ELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKL 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 684 NVIDSKTAEAETQKRAYGELQQKAEFSDQKHEKEIENMCLKIsHLTGQVEDLEHKLQLLSSEIMDKDQRYQDLHAESESL 763
Cdd:pfam02463 567 VRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQL-DKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKE 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 764 RDLLKSRDSSAMTIEPHQRSRLAFEQQSALNNSFANIIGEQESVPSERSRCHVATDQSPKSSSMLQNRVVSLEFSLESQK 843
Cdd:pfam02463 646 SGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLAD 725
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 844 QMNSDLQKQCEELVQIKGEIEENLMKAEQMHQSFVAETSQRISKLQEDTSVHQNVVAETLAALESKERElqLLNEKLETE 923
Cdd:pfam02463 726 RVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEE--KLKAQEEEL 803
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 924 QAETGELKKNNHLLQESLKELQFLSETLSLEKKELNSIISLNKKDIEELTQENGTLKEINATLTQEKMNLLQKTESFSNC 1003
Cdd:pfam02463 804 RALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQK 883
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1004 IDERDRSISELSNQYKQERLTLLQRCEETGNAFQDLSEKYKAVQEKNSKLECLLSECTGVCEDRKNELGQLKETFAREHQ 1083
Cdd:pfam02463 884 LKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNK 963
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*...
gi 528980992 1084 AFVSQLALAEERNQNLIVELETVQQALQSEITDIQNSSKRETDGLKQEIMNLKEEQNK 1141
Cdd:pfam02463 964 RLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKE 1021
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1889-2589 |
1.37e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 64.37 E-value: 1.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1889 REKCLQVENELQRIQSEKDSMEHHALSAEASLEAVQTEklyLEKDNENKQTVITCLEEGLSVVTSERDQLRGELDTLSKE 1968
Cdd:pfam15921 109 RQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQ---LQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGV 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1969 NQE----LDQMSEKMKEKIRELES-----HQSECLHLQEWLQSLEKDSQALSLVRSELENQIEQLNKEKDS-----LVWE 2034
Cdd:pfam15921 186 LQEirsiLVDFEEASGKKIYEHDSmstmhFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNkiellLQQH 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2035 SESLQTKLSESEHEKLAITKALEAALMEKGEVAVRLSSTQEevhQLRKGIEKLRVRIEADEKKQLHVSEKLKESERrndS 2114
Cdd:pfam15921 266 QDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQE---QARNQNSMYMRQLSDLESTVSQLRSELREAKR---M 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2115 LQDKVETLERELQMAEENQELVILDAENCKAEVETLKTQIELMTERLKDLELDLVTIRSEK--------------ENLLK 2180
Cdd:pfam15921 340 YEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNkrlwdrdtgnsitiDHLRR 419
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2181 QLQEKQGQASELDTLLSSLKNLLE---EKEREKIQTKEEA-----------KSAVEMLQTQLRELTEEIAALCDDQETWK 2246
Cdd:pfam15921 420 ELDDRNMEVQRLEALLKAMKSECQgqmERQMAAIQGKNESlekvssltaqlESTKEMLRKVVEELTAKKMTLESSERTVS 499
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2247 VEEQSLDSPAQEVQQLRNNIEKLKVHLDIdkkkQLQILEKLKESEHQADFLKDTVENLERE----------LKLSGENQE 2316
Cdd:pfam15921 500 DLTASLQEKERAIEATNAEITKLRSRVDL----KLQELQHLKNEGDHLRNVQTECEALKLQmaekdkvieiLRQQIENMT 575
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2317 HVTLEAEKSKAEVETLKATVEKmDQNLRGLQLDLVNIRSEKEDltKELQKEQSRVSELE-----TLNSSFENL--LREKE 2389
Cdd:pfam15921 576 QLVGQHGRTAGAMQVEKAQLEK-EINDRRLELQEFKILKDKKD--AKIRELEARVSDLElekvkLVNAGSERLraVKDIK 652
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2390 QEKVQMKEESKAAvemlQTQLKELSEEVAILC---------VDQETWKVEEQsLDSPLEEIQQLRNNIGKLKVCLDADKK 2460
Cdd:pfam15921 653 QERDQLLNEVKTS----RNELNSLSEDYEVLKrnfrnkseeMETTTNKLKMQ-LKSAQSELEQTRNTLKSMEGSDGHAMK 727
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2461 QQLHILEKLKESEHQADFLKDTVENLERelKLSGENQEHVTLEAEKSKAEVETlkATVEEMDQNLRGlqlDLVNIRSDKE 2540
Cdd:pfam15921 728 VAMGMQKQITAKRGQIDALQSKIQFLEE--AMTNANKEKHFLKEEKNKLSQEL--STVATEKNKMAG---ELEVLRSQER 800
|
730 740 750 760
....*....|....*....|....*....|....*....|....*....
gi 528980992 2541 DLTKELQKEQSRVSELETLNSSFENLLREKEQEKVQMKEESKAAVEMLQ 2589
Cdd:pfam15921 801 RLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKELQ 849
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1790-2632 |
1.68e-09 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 64.22 E-value: 1.68e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1790 EERDQKVENLLNEIKELDSKFHLLEVQLTTKIEACVALEKIVEELKKEKLDLNEKLESFSCHNQREESSggLTSNLEMVT 1869
Cdd:pfam02463 173 EALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDL--LQELLRDEQ 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1870 SKFPHEGIEDDVAKvtdnwrEKCLQVENELQRIQSEKDSMEHHALSAEASLEAVQTEKLYLEKDNENKQTVITCLEEGLS 1949
Cdd:pfam02463 251 EEIESSKQEIEKEE------EKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKK 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1950 VVTSERDQLRGELDTLSKENQELDQMSEKMKEKIRELES-HQSECLHLQEWLQSLEKDSQALSLVRSELENQIEQLNKEK 2028
Cdd:pfam02463 325 KAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKlQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEE 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2029 DSLVWESESLQTKLSESEHEKLAITKALEAALMEKGEVAVRLSSTQEEVHQLRKGIEKLRV---RIEADEKKQLHVSEKL 2105
Cdd:pfam02463 405 KEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELelkKSEDLLKETQLVKLQE 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2106 KESERRNDSLQDKVETLERELQ-MAEENQELVILDAENCKAEVETLKTQIELMTERLKDLELDLVTIRSEKENllkqlQE 2184
Cdd:pfam02463 485 QLELLLSRQKLEERSQKESKARsGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATA-----DE 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2185 KQGQASELDTLLSSLKNLLEEKEREKIQTKEEAKSAVEMLQTQLRELTEEIAALCDDQETWKVEEQSLDSPAQEVQQLRN 2264
Cdd:pfam02463 560 VEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKE 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2265 NIEKLKVHLDIDKKKQLQILEKLKESEHQADFLKDTVENLERELKLSGENQ-EHVTLEAEKSKAEVETLKATVEKMDQNL 2343
Cdd:pfam02463 640 SAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAkEEILRRQLEIKKKEQREKEELKKLKLEA 719
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2344 RGLQLDLVNIRSEKEDLTKELQKEQSRVSELETLNSSFENLLREKEQEKVQMKEESKAAVEMLQTQLKELSEEVAILCVD 2423
Cdd:pfam02463 720 EELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQ 799
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2424 QETWKVEEQSLDSPLEEIQQLRNNIGKLKVCLDADKKQQLHILEKLKESEHQADFLKDTVENLERELKLSGENQEHVTLE 2503
Cdd:pfam02463 800 EEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEEL 879
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2504 AEKSKAEVETLKATVEEMDQNL---RGLQLDLVNIRSDKEDLTKELQKEQSRVSELETLNSSFENLLREKEQEKVQMKEE 2580
Cdd:pfam02463 880 EEQKLKDELESKEEKEKEEKKEleeESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEE 959
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|..
gi 528980992 2581 SKAAVEMLQKELEELNEKMAALgnDQETRKVKEQSLSSQVDSLEHEKAQLLQ 2632
Cdd:pfam02463 960 ERNKRLLLAKEELGKVNLMAIE--EFEEKEERYNKDELEKERLEEEKKKLIR 1009
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1944-2665 |
4.45e-09 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 62.43 E-value: 4.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1944 LEEGLSVVTSERDQLRGELDTLSKENQELDQMSEKMKEKIRELESHQSECLHLQEWLQSLEKDSQALSLVRSELENQIEQ 2023
Cdd:pfam05483 108 LQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLCNLLKETCARSAEKTKKYEYEREETRQVYMD 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2024 LNKEKDSLVWESESLQTKLSESEHEklaitkaLEAALMEKGEVAVRLSST-QEEVHQLRKGIEKLRVRIEADEKKQLHVS 2102
Cdd:pfam05483 188 LNNNIEKMILAFEELRVQAENARLE-------MHFKLKEDHEKIQHLEEEyKKEINDKEKQVSLLLIQITEKENKMKDLT 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2103 EKLKESERRNDSLQDKVETLERELQMAEENQELVILDAENCKAEVETLKTQIELMTERLKDLELDLVTIRSEKENLLKQL 2182
Cdd:pfam05483 261 FLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEEL 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2183 QEKQGQASELDTLLSSLKNLLEEKEREKIQTKEEAKSAVEMLQTQLRELTEEIAALCDDQETWKVEEQSLDSPAQEVQQL 2262
Cdd:pfam05483 341 NKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKL 420
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2263 rnnieklkvhldIDKKKQLQ-ILEKLKESEHQADFLKDT----VENLERELKLSGENQEHVTLEAEKSKAEVETLKATVE 2337
Cdd:pfam05483 421 ------------LDEKKQFEkIAEELKGKEQELIFLLQArekeIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNI 488
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2338 KMDQNLRGLQLDLVNIRSEKEDLTKELQKEQsrvseletlnssfENLLREKEQEKVQMKEeskaaVEMLQTQLKELSEEv 2417
Cdd:pfam05483 489 ELTAHCDKLLLENKELTQEASDMTLELKKHQ-------------EDIINCKKQEERMLKQ-----IENLEEKEMNLRDE- 549
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2418 ailcvdqetwkveeqsLDSPLEEIQQLRNNIgklKVCLDADKKQQLHILEKLKESEHQADFLKDTVENLERELKLSGENQ 2497
Cdd:pfam05483 550 ----------------LESVREEFIQKGDEV---KCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNI 610
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2498 EHVTLE--AEKSKAEVETLKATVEEMDQNlrGLQLDLVNIRSDKEDLTKELQKeqsrvsELETLNSSFENLLREKEQEKV 2575
Cdd:pfam05483 611 EELHQEnkALKKKGSAENKQLNAYEIKVN--KLELELASAKQKFEEIIDNYQK------EIEDKKISEEKLLEEVEKAKA 682
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2576 QMKEESK--------------AAVEMLQKELEELNEKMAALGNDQETRKVKEQSLSSQVDSLEHEKAQLLQDLDDAKSNY 2641
Cdd:pfam05483 683 IADEAVKlqkeidkrcqhkiaEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQL 762
|
730 740
....*....|....*....|....
gi 528980992 2642 MILQSSVNDLIQEVEDGKQKLEKK 2665
Cdd:pfam05483 763 EIEKEEKEKLKMEAKENTAILKDK 786
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1896-2448 |
1.30e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 60.80 E-value: 1.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1896 ENELQRIQSEKDSMEHHALSAEASLEAVQTEKLYLEKDNENKQTVITCLEEGLSVVTSERDQLRGELDTLSKENQELDQM 1975
Cdd:TIGR04523 123 EVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELL 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1976 SEKMKEKIRELESHQSECLHLQEWLQSLEKDSQALSLVRSELENQIEQLNKEKDSLVWESESLQTKLSESEHEKLAITKA 2055
Cdd:TIGR04523 203 LSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKK 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2056 LEAALMEKGEVAVRLSSTQEEVHQlrKGIEKLRVRIEADEKKQLHVSEKLKESERRNDSLQDKVETLERELQMAEENQEL 2135
Cdd:TIGR04523 283 IKELEKQLNQLKSEISDLNNQKEQ--DWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSE 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2136 VILDAENCKAEVETLKTQIELMTERLKDLEldlvtirSEKENLLKQLQEKQGQASELDTLLSSLKNLLEEKEREkiqtKE 2215
Cdd:TIGR04523 361 KQRELEEKQNEIEKLKKENQSYKQEIKNLE-------SQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKE----IE 429
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2216 EAKSAVEMLQTQLRELTEEIAALcddQETWKVEEQSLDSPAQEVQQLRNNIEKLKVHLDIDKKKQLQILEKLKESEHQAD 2295
Cdd:TIGR04523 430 RLKETIIKNNSEIKDLTNQDSVK---ELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKK 506
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2296 FLKDTVENLERELKLSGENQEHVTLEAEKSKAEVETLKATVEKMDQNlrglqLDLVNIRSEKEDLTKELQKEQSRVSELE 2375
Cdd:TIGR04523 507 ELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFE-----LKKENLEKEIDEKNKEIEELKQTQKSLK 581
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 528980992 2376 TLNSSFENLLREKEQEKVQMKEEskaaVEMLQTQLKELSEEVAILCVDQETWKVEEQSLDSPLEEIQQLRNNI 2448
Cdd:TIGR04523 582 KKQEEKQELIDQKEKEKKDLIKE----IEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQI 650
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2765-3041 |
1.42e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.84 E-value: 1.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2765 ELQKEI-HAVIQKTVALKEEFSGEKNRLMEELNLMLEEVKSSKGQLKELMLENSELKKSLDCVHKDRMEEQGKM---RGE 2840
Cdd:TIGR02168 217 ELKAELrELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELyalANE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2841 IAEYQLRLQEAENKhQALLLDTNKQHEMEIQTYREKLTSKEECLSSQKVEIDLLKSSKEELNNSLKATTEILEELKKtkm 2920
Cdd:TIGR02168 297 ISRLEQQKQILRER-LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELES--- 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2921 enlkHADKLKKENDRAQSKIKLLVKSCKQLEEEKVMLQKELSHLEAAQEKQRADT------VVDANVDELITEMKELKET 2994
Cdd:TIGR02168 373 ----RLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIeellkkLEEAELKELQAELEELEEE 448
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 528980992 2995 LEEKTKEADEYLDKYCSLLISHEKLEKAKEMLETQVARLSSQQSKLN 3041
Cdd:TIGR02168 449 LEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLE 495
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
2375-2916 |
1.72e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 60.44 E-value: 1.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2375 ETLNSSFENLLREKEQEkVQMKEESK--AAVEMLQTQLKELSEEVAILCVDQETWKVEEQSLDSPLEEIQQLRNNIGKLK 2452
Cdd:PRK02224 179 ERVLSDQRGSLDQLKAQ-IEEKEEKDlhERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2453 VCLDadkkqqlHILEKLKESEHQADFLKDTVENLERELKLSGENQEHVTLEAEKSKAEVETLKATVEEMDQNLRGLQLDL 2532
Cdd:PRK02224 258 AEIE-------DLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRL 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2533 VNIRSDKEDLTKELQKEQSRVSELETLNSSfenlLREKEQEKVQMKEESKAAVEMLQKELEELNEKMAALGNDQETRKVK 2612
Cdd:PRK02224 331 EECRVAAQAHNEEAESLREDADDLEERAEE----LREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVD 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2613 EQSLSSQVDSLEHEKAQLLQDLDDAKSNYMILQSSVNDLIQEVEDGK-----QKLEkkDEEISILKSQTRDQ-EQLVSKL 2686
Cdd:PRK02224 407 LGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKcpecgQPVE--GSPHVETIEEDRERvEELEAEL 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2687 SQMEGEQQLWKKQKADLENLmVELEQKIQVLQSKNDALQDTLEalQNSSRNLEKELELTKLEKMsfVEKVNTMTVKETEL 2766
Cdd:PRK02224 485 EDLEEEVEEVEERLERAEDL-VEAEDRIERLEERREDLEELIA--ERRETIEEKRERAEELRER--AAELEAEAEEKREA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2767 QKEIHAVIQKTVALKEEFSGEKNRLMEELNlMLEEVKSSKGQLKELMLENSELKKSLDcvHKDRMEEQGKMRgeIAEYQL 2846
Cdd:PRK02224 560 AAEAEEEAEEAREEVAELNSKLAELKERIE-SLERIRTLLAAIADAEDEIERLREKRE--ALAELNDERRER--LAEKRE 634
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2847 RLQEAENKHQALLLDTNKQHEMEIQTYREKLTSKEECLSSQKveiDLLKSSKEELNNSLKATTEILEELK 2916
Cdd:PRK02224 635 RKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREER---DDLQAEIGAVENELEELEELRERRE 701
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2500-2743 |
2.81e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 59.01 E-value: 2.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2500 VTLEAEKSKAEVETLKATVEEMDQNLRGLQLDLVNIRSDKEDLTKELQKEQSRVSELETLNSSFENLLREKEQEKVQMKE 2579
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2580 ESKAavemLQKELEELNEKMAALgndqetrkVKEQSLSSQVDSLEHEKAQllQDLDDAKSNYMILQSSVNDLIQEVEDGK 2659
Cdd:COG4942 91 EIAE----LRAELEAQKEELAEL--------LRALYRLGRQPPLALLLSP--EDFLDAVRRLQYLKYLAPARREQAEELR 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2660 QKLEKkdeeisiLKSQTRDQEQLVSKLSQMEGEQQlwkKQKADLENLMVELEQKIQVLQSKNDALQDTLEALQNSSRNLE 2739
Cdd:COG4942 157 ADLAE-------LAALRAELEAERAELEALLAELE---EERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELE 226
|
....
gi 528980992 2740 KELE 2743
Cdd:COG4942 227 ALIA 230
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
2194-2660 |
3.37e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 59.40 E-value: 3.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2194 TLLSSLKNLLE---EKEREKIQTKEEAKSavEMLQTQLRELTEEIAALCDDQETWKVEEQSLDSPAQEVQQLRNNIEKLK 2270
Cdd:COG4717 38 TLLAFIRAMLLerlEKEADELFKPQGRKP--ELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELR 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2271 VHLD-IDKKKQLQ-ILEKLKESEHQADFLKDTVENLERELKLSGENQ---EHVTLEAEKSKAEVETLKATV-EKMDQNLR 2344
Cdd:COG4717 116 EELEkLEKLLQLLpLYQELEALEAELAELPERLEELEERLEELRELEeelEELEAELAELQEELEELLEQLsLATEEELQ 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2345 GLQLDLVNIRSEKEDLTKELQKEQSRVSELET-LNSSFENLLREKEQEKVQMKEESKAAVEMLQTQLKELSEEVAILCVD 2423
Cdd:COG4717 196 DLAEELEELQQRLAELEEELEEAQEELEELEEeLEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTI 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2424 QETWKVEEQSLdsPLEEIQQLRNNIGKLKVCLDADKKQQLHILEKLKESEHQADFLKDTVENLERELKLSGENQEHVTLE 2503
Cdd:COG4717 276 AGVLFLVLGLL--ALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELL 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2504 AEKSKAEVE-TLKATVEEMDQNLRGLQLDLVNIRSDKEDLTKELQKEQSRVSE----LETLNSSFENLLREKEQEKVQMK 2578
Cdd:COG4717 354 REAEELEEElQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEEleeqLEELLGELEELLEALDEEELEEE 433
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2579 -EESKAAVEMLQKELEELNEKMAALgnDQETRKVKEQSLSSQVDSLEHEKAQLLQDLDDAKSNYMILQSSVNDLIQEVED 2657
Cdd:COG4717 434 lEELEEELEELEEELEELREELAEL--EAELEQLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYRE 511
|
...
gi 528980992 2658 GKQ 2660
Cdd:COG4717 512 ERL 514
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
2277-2926 |
3.69e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 59.69 E-value: 3.69e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2277 KKKQLQILEKLKESEHQADFLKDTVENLERELKlsgenqehvtlEAEKSKAEVETLKATVEKMDQNLRGLQLDLVNIRSE 2356
Cdd:PRK03918 199 EKELEEVLREINEISSELPELREELEKLEKEVK-----------ELEELKEEIEELEKELESLEGSKRKLEEKIRELEER 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2357 KEDLTKELQKEQSRVSELETLnssfenllREKEQEKVQMKEESKAAVEMLQTQLKELSeevailcvdqeTWKVEEQSLDS 2436
Cdd:PRK03918 268 IEELKKEIEELEEKVKELKEL--------KEKAEEYIKLSEFYEEYLDELREIEKRLS-----------RLEEEINGIEE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2437 PLEEIQQLRNNIGKLKvcldADKKQQLHILEKLKESEHQADFLKDTVENLER-ELKLSGENQEhvtlEAEKSKAEVETLK 2515
Cdd:PRK03918 329 RIKELEEKEERLEELK----KKLKELEKRLEELEERHELYEEAKAKKEELERlKKRLTGLTPE----KLEKELEELEKAK 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2516 ATVEEMDQNLRGLQLDLVNIRSDKEDLTKELQKEQSR--VSELETLNSSFENLLREKEQEKVQMKEESKAAVEMLQKELE 2593
Cdd:PRK03918 401 EEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKcpVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRK 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2594 ELNEKMAALGNDQETRKVKEqsLSSQVDSLEHEKAQLlqDLDDAKSNYmilqssvndliQEVEDGKQKLEKKDEEISILK 2673
Cdd:PRK03918 481 ELRELEKVLKKESELIKLKE--LAEQLKELEEKLKKY--NLEELEKKA-----------EEYEKLKEKLIKLKGEIKSLK 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2674 SQTrdqeqlvsklsqmegeqqlwkKQKADLENLMVELEQKIQVLQSKNDALQDTLEALQNSSrnlEKELELTKLEKMSFV 2753
Cdd:PRK03918 546 KEL---------------------EKLEELKKKLAELEKKLDELEEELAELLKELEELGFES---VEELEERLKELEPFY 601
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2754 EKVNTMTVKETELQKEIHAVIQKTVALKEEFsgeknrlmEELNLMLEEVKSSKGQLKELMLENSELKksldcvHKDRMEE 2833
Cdd:PRK03918 602 NEYLELKDAEKELEREEKELKKLEEELDKAF--------EELAETEKRLEELRKELEELEKKYSEEE------YEELREE 667
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2834 QGKMRGEIAEYQLRLQEAENKhqallldtnkqhemeiqtyREKLTSKEECLSSQKVEIDLLKSSKEELNNSLKATTEILE 2913
Cdd:PRK03918 668 YLELSRELAGLRAELEELEKR-------------------REEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELRE 728
|
650
....*....|...
gi 528980992 2914 ELKKTKMENLKHA 2926
Cdd:PRK03918 729 KVKKYKALLKERA 741
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
2144-2869 |
3.95e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 59.60 E-value: 3.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2144 KAEVETLKTQIELMTERLKDLELDLVTIRSEKENLLKQLQEKQGQASELDTLLSSLKNLLEEKEREKIQTKEeaksavem 2223
Cdd:TIGR00618 193 HGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQ-------- 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2224 LQTQLRELTEEIAALCDDQETWKVEEQS--LDSPAQEVQQLRNNIEKLKVHLdidkkkQLQILEKLKESEHQADFLKDTV 2301
Cdd:TIGR00618 265 LRARIEELRAQEAVLEETQERINRARKAapLAAHIKAVTQIEQQAQRIHTEL------QSKMRSRAKLLMKRAAHVKQQS 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2302 ENLERELKLSGENQEHVTLEAEKSKAEVETLKATVEKMD-QNLRGLQLDLVNIRSEKEDLTKELQKEQSRVSELETLNSS 2380
Cdd:TIGR00618 339 SIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLtQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSA 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2381 FENLLREKEQEKVQMKEESKAAVEMLQTQLKELSEEVAILCVDQETwkveEQSLDsplEEIQQLRNnigKLKVCLDADKK 2460
Cdd:TIGR00618 419 FRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQES----AQSLK---EREQQLQT---KEQIHLQETRK 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2461 QQLHILEKLKESEHQADFLKDTVE-NLERELKLSGENQEHVTLEAEKSKAEVETLKATVEEMDQNLRGlqldlvNIRSDK 2539
Cdd:TIGR00618 489 KAVVLARLLELQEEPCPLCGSCIHpNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERK------QRASLK 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2540 EDLTKELQKEQSRVSELETLNSSFENLLREKEQEKVQMKEESKA---AVEMLQKELEELNEKMAALGNDQETRKvKEQSL 2616
Cdd:TIGR00618 563 EQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAedmLACEQHALLRKLQPEQDLQDVRLHLQQ-CSQEL 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2617 SSQVDSLEHEKAQLLQDlddaksnyMILQSSVNDLIQEVEDGKQKLEKKDEEISILKSQTRDQEQLVSKLSQMEGEQQLW 2696
Cdd:TIGR00618 642 ALKLTALHALQLTLTQE--------RVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHI 713
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2697 KKQKADLENLMVELEQKIQVLQSKNDALQDTLEALQNSSRNLEKELELTKLEKMSFVEKVNTMTVKETELQKEIHaviqk 2776
Cdd:TIGR00618 714 EEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQ----- 788
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2777 tvalkeefsgEKNRLMEELNLMLEEVKSSKGQ-----LKELMLENSELKKSLDCVHKdRMEEQGKMRGEIAEYQLRLQEA 2851
Cdd:TIGR00618 789 ----------FFNRLREEDTHLLKTLEAEIGQeipsdEDILNLQCETLVQEEEQFLS-RLEEKSATLGEITHQLLKYEEC 857
|
730
....*....|....*...
gi 528980992 2852 ENKHQALLLDTNKQHEME 2869
Cdd:TIGR00618 858 SKQLAQLTQEQAKIIQLS 875
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
2328-2919 |
5.06e-08 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 59.14 E-value: 5.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2328 EVETLKATVEKMDQNLRGLQLDLVNIRSEKEDLtkelqkeQSRVSELETLNSSFEnllrekeqekvqmkeESKAAVEMLQ 2407
Cdd:PRK01156 160 EINSLERNYDKLKDVIDMLRAEISNIDYLEEKL-------KSSNLELENIKKQIA---------------DDEKSHSITL 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2408 TQLKELSEEVAILCVDQETWKVEEQSLDSPLEEIQQLRNNIGKLkvclDADKKQQLHILEKLKESEHQADFLKDTVENLE 2487
Cdd:PRK01156 218 KEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTA----ESDLSMELEKNNYYKELEERHMKIINDPVYKN 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2488 RElklsgENQEHVTL--EAEKSKAEVETLKATVEEMDQNLRGLQlDLVNIRSDKEDLTKELQKEQSRVSELETLNSSFEN 2565
Cdd:PRK01156 294 RN-----YINDYFKYknDIENKKQILSNIDAEINKYHAIIKKLS-VLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNS 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2566 LLREKEQEKVQMKEESKAAVEMLQKELEELNEKMA---ALGNDQETRKVKEQSLSSQVDSLEHEKAQLLQDLDDAKSNYM 2642
Cdd:PRK01156 368 YLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIdpdAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNME 447
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2643 ILQ--------------SSVNDLIQEVEDGKQKLEKK----DEEISILKSQTRDQEQLVSKLS-----QMEGEQQLWKKQ 2699
Cdd:PRK01156 448 MLNgqsvcpvcgttlgeEKSNHIINHYNEKKSRLEEKireiEIEVKDIDEKIVDLKKRKEYLEseeinKSINEYNKIESA 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2700 KADLENLMVElEQKIQVLQSKNDALQDTLEALQNSSRNLEKELELTKLEKMSFVEkVNTMTVKETELQKEIHAVIQKTVA 2779
Cdd:PRK01156 528 RADLEDIKIK-INELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLID-IETNRSRSNEIKKQLNDLESRLQE 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2780 LKEEFSGEKNRLMEELNLMLEEVKSSKGQLKELmlenSELKKSLDcvhkdrmeeqgKMRGEIAEYQLRLQEAEN--KHQA 2857
Cdd:PRK01156 606 IEIGFPDDKSYIDKSIREIENEANNLNNKYNEI----QENKILIE-----------KLRGKIDNYKKQIAEIDSiiPDLK 670
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 528980992 2858 LLLDTNKQHEMEIQTYREKLTSKEECLSSQKVEIDLLKSSKEELNNSLKATTEILEELKKTK 2919
Cdd:PRK01156 671 EITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKKIK 732
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2067-2326 |
6.13e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.85 E-value: 6.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2067 AVRLSSTQEEVHQLRKGIEKLRVRIEADEKKQLHVSEKLKESERRNDSLQDKVETLERELQMAEEnqelvildaenckae 2146
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEA--------------- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2147 vetlktQIELMTERLKDLELDLVTIRSEKENLLKQLQeKQGQASELDTLLSSlKNLLEEKEREKI--QTKEEAKSAVEML 2224
Cdd:COG4942 84 ------ELAELEKEIAELRAELEAQKEELAELLRALY-RLGRQPPLALLLSP-EDFLDAVRRLQYlkYLAPARREQAEEL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2225 QTQLRELTEEIAALCDDQETWKVEEQSLDSPAQEVQQLRNNIEKLKVHLDIDKKKQLQILEKLKESEHQadfLKDTVENL 2304
Cdd:COG4942 156 RADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE---LEALIARL 232
|
250 260
....*....|....*....|..
gi 528980992 2305 ERELKLSGENQEHVTLEAEKSK 2326
Cdd:COG4942 233 EAEAAAAAERTPAAGFAALKGK 254
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
280-543 |
1.51e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.64 E-value: 1.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 280 LDQLKAQNQELRSKMSELELRLQGQEKEMKGQVNKLQELQLQLEKAKVELNEKEKVLNKNRDELVRTTSQYDQASAKCTA 359
Cdd:COG1196 248 LEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAE 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 360 LEQKLKKLTEDLSCQRQNAESARcSLEQKIKEKEKEFQEELSRQQRSFQTLDQEctqmKARLTQELQQAKNTYNILQAEL 439
Cdd:COG1196 328 LEEELEELEEELEELEEELEEAE-EELEEAEAELAEAEEALLEAEAELAEAEEE----LEELAEELLEALRAAAELAAQL 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 440 DKVTSVKQQIEKKLEEFKQNFSKTEQALQASQTKENELRRSSEEMKRENSLLKSQSEQRAREVCHLEEELKKAKQCLSQS 519
Cdd:COG1196 403 EELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAEL 482
|
250 260
....*....|....*....|....
gi 528980992 520 QNFAEEMKAKNTSQETMLRDLQEK 543
Cdd:COG1196 483 LEELAEAAARLLLLLEAEADYEGF 506
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2069-2641 |
2.31e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.85 E-value: 2.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2069 RLSSTQEEVHQLRKGIEKL-----------RVRIEADEKKQLHVSEKLKESERRNDSLQDKVETLERELQMAEENQELVI 2137
Cdd:COG4913 236 DLERAHEALEDAREQIELLepirelaeryaAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2138 LDAENCKAEVETLKTQI-ELMTERLKDLELDLvtirsekENLLKQLQEKQGQASELDTLLSSLKNLLEEKEREKIQTKEE 2216
Cdd:COG4913 316 ARLDALREELDELEAQIrGNGGDRLEQLEREI-------ERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAE 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2217 AKSAVEMLQTQLRELTEEIAALCDDQETWKVEEQSLDSPAQEVQQLRNNI--------EKLKVHLDIDKKK------QLQ 2282
Cdd:COG4913 389 AAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIparllalrDALAEALGLDEAElpfvgeLIE 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2283 ILEK-------------------LKESEHQADFLKdTVENLERELKLSGENQEHVTLEAEKSKAEVETLkatVEKMD--- 2340
Cdd:COG4913 469 VRPEeerwrgaiervlggfaltlLVPPEHYAAALR-WVNRLHLRGRLVYERVRTGLPDPERPRLDPDSL---AGKLDfkp 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2341 -------QNLRGLQLDLVNIRSEKEdltkeLQKEQSRVSELETLNSSFEnlLREKEQEKVQMKE-----ESKAAVEMLQT 2408
Cdd:COG4913 545 hpfrawlEAELGRRFDYVCVDSPEE-----LRRHPRAITRAGQVKGNGT--RHEKDDRRRIRSRyvlgfDNRAKLAALEA 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2409 QLKELSEEVAilcvdqetwkveeqSLDSPLEEIQQLRNNIgklkvcldADKKQQLHILEKLKESEHQADFLKDTVENLER 2488
Cdd:COG4913 618 ELAELEEELA--------------EAEERLEALEAELDAL--------QERREALQRLAEYSWDEIDVASAEREIAELEA 675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2489 ELKlsgenqehvtlEAEKSKAEVETLKATVEEmdqnlrgLQLDLVNIRSDKEDLTKELQKEQSRVSELETlnssfenllr 2568
Cdd:COG4913 676 ELE-----------RLDASSDDLAALEEQLEE-------LEAELEELEEELDELKGEIGRLEKELEQAEE---------- 727
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 528980992 2569 ekEQEKVQMKEESKAAVEMLQkELEELNEKMAALGNDQETRKVKEQsLSSQVDSLEHEKAQLLQDLDDAKSNY 2641
Cdd:COG4913 728 --ELDELQDRLEAAEDLARLE-LRALLEERFAAALGDAVERELREN-LEERIDALRARLNRAEEELERAMRAF 796
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
2380-3030 |
2.44e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 56.57 E-value: 2.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2380 SFENLLREKEQEKVQMKEESKAAVEMLQTQLKELSEEVAILCVDQETWKVEEQSLDSPLEEIQQLRNNIGKLKVCLDADK 2459
Cdd:TIGR04523 23 GYKNIANKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLN 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2460 KQQLHILEKLKESEHQADFLKDTVENLERELKLSGENQEHVTLEAEKSKAEVETLKATVEEMDQNLRGLQLDLVNIRSDK 2539
Cdd:TIGR04523 103 SDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEK 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2540 EDLTKELQKEQSRVSELETLNSSFENLLREKEQekvqmkeeskaavemLQKELEELNEKMAALGNDQETRKVKEQSLSSQ 2619
Cdd:TIGR04523 183 LNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKS---------------LESQISELKKQNNQLKDNIEKKQQEINEKTTE 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2620 VDSLEHEKAQLLQDLDDAKSNYMILQSSV---NDLIQEVEDGKQKLEKKDEEISILKSQTRDQEqLVSKLSQMEGEQQLW 2696
Cdd:TIGR04523 248 ISNTQTQLNQLKDEQNKIKKQLSEKQKELeqnNKKIKELEKQLNQLKSEISDLNNQKEQDWNKE-LKSELKNQEKKLEEI 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2697 KKQKADLENLMVELEQKIQVLQSKNDALQDTLEALQNSSRNLEKELELTKLEKMSFVEKVNTMTVKETELQKEIHAVIQK 2776
Cdd:TIGR04523 327 QNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKL 406
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2777 TVALKEEFSG---EKNRLMEELNLMLEEVKSSKGQLKELMLENSELKKSLDCVHKDRMEEQGKMRGEIAEYQLRLQEAEN 2853
Cdd:TIGR04523 407 NQQKDEQIKKlqqEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQ 486
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2854 KHQALlldtnKQHEMEIQTYREKLTSKEECLSSQKVEIDLLKSSKEELNNSLKATTEILEELKK--TKMENLKHADKLKK 2931
Cdd:TIGR04523 487 KQKEL-----KSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDelNKDDFELKKENLEK 561
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2932 ENDRAQSKIKLLVKSCKQLEEEKVMLQKELSHLEAaqekqradtvvdaNVDELITEMKELKETLEEKTKEADEYLDKYCS 3011
Cdd:TIGR04523 562 EIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEK-------------EKKDLIKEIEEKEKKISSLEKELEKAKKENEK 628
|
650
....*....|....*....
gi 528980992 3012 LLISHEKLEKAKEMLETQV 3030
Cdd:TIGR04523 629 LSSIIKNIKSKKNKLKQEV 647
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
280-487 |
2.92e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.54 E-value: 2.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 280 LDQLKAQNQELRSKMSELELRLQGQEKEMKGQVNKLQELQLQLEKAKVELNEKEKVLNKNRDELVRTTSQYDQasakcta 359
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE------- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 360 LEQKLKKLTEDLSCQRQNAE-------------SARCSLEQKIKEKEKEFQEELSRQQRSFQTLDQECTQMKARLTQELQ 426
Cdd:COG4942 95 LRAELEAQKEELAELLRALYrlgrqpplalllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 528980992 427 QAKNTYNILQAELDKVTSVKQQIEKKLEEFKQNFSKTEQALQASQTKENELRRSSEEMKRE 487
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1963-2209 |
3.66e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.54 E-value: 3.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1963 DTLSKENQELDQMSEKMKEKIRELESHQSECLHLQEWLQSLEKDSQALSLVRSELENQIEQLNKEKDSLVWESESLQTKL 2042
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2043 SESEHEklaITKALEAALMEKGEVAVRLSSTQEEVHQLRKGIEKLRVRIEADEKKQLHVSEKLKESERRNDSLQDKVETL 2122
Cdd:COG4942 100 EAQKEE---LAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2123 ERELQMAEENQelvildaenckAEVETLKTQIELMTERLkdleldlvtiRSEKENLLKQLQEKQGQASELDTLLSSLKNL 2202
Cdd:COG4942 177 EALLAELEEER-----------AALEALKAERQKLLARL----------EKELAELAAELAELQQEAEELEALIARLEAE 235
|
....*..
gi 528980992 2203 LEEKERE 2209
Cdd:COG4942 236 AAAAAER 242
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
2258-3005 |
3.74e-07 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 56.60 E-value: 3.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2258 EVQQLRNNIEKLKVHLDIDKKKQLQILEKLKEsehQADFLKDTVENLER---ELKLSG-ENQEHVTLE--AEKSKAEVET 2331
Cdd:TIGR01612 672 DIDALYNELSSIVKENAIDNTEDKAKLDDLKS---KIDKEYDKIQNMETatvELHLSNiENKKNELLDiiVEIKKHIHGE 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2332 LKATVEKMDQNLRGLQLDLVNIRSEKEDLTKELQKEQSRVSELETLNSSFENLLREKEQEKVQMKEESKAAVEMLQTQLK 2411
Cdd:TIGR01612 749 INKDLNKILEDFKNKEKELSNKINDYAKEKDELNKYKSKISEIKNHYNDQINIDNIKDEDAKQNYDKSKEYIKTISIKED 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2412 ELSEEVailcvdqETWKVEEQSLDSPLEEIQQLRNNigkLKVCLDADKKQQLHILEKLKesehqADFLKDTVENLERELK 2491
Cdd:TIGR01612 829 EIFKII-------NEMKFMKDDFLNKVDKFINFENN---CKEKIDSEHEQFAELTNKIK-----AEISDDKLNDYEKKFN 893
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2492 LSGENQEHVTLEAEKSKAEVETLKaTVEEMDQNLRGLQLDLVNIRSDKEDLTKELQKEQSRVSELETLNSS----FENLL 2567
Cdd:TIGR01612 894 DSKSLINEINKSIEEEYQNINTLK-KVDEYIKICENTKESIEKFHNKQNILKEILNKNIDTIKESNLIEKSykdkFDNTL 972
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2568 REK--EQEKVqMKEESKAAVEMLQKEL-EELNEKMAALGndqetrKVKEQSLSSQVDSLEHEKAQLLQDLDDAKSNY--- 2641
Cdd:TIGR01612 973 IDKinELDKA-FKDASLNDYEAKNNELiKYFNDLKANLG------KNKENMLYHQFDEKEKATNDIEQKIEDANKNIpni 1045
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2642 -MILQSSVNDLIQEVEdgkqKLEKKDEEiSILKSQTRDQEQLVSKLSQMEGEQQLW------KKQKADLENLMVELEQKI 2714
Cdd:TIGR01612 1046 eIAIHTSIYNIIDEIE----KEIGKNIE-LLNKEILEEAEINITNFNEIKEKLKHYnfddfgKEENIKYADEINKIKDDI 1120
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2715 QVLQSKNDALQDTLEALQNSSRNLEKELElTKLEKMSFVEKVNTMTVKETELQKEIHAVIQKtVALKEEFSGEKNRLMEE 2794
Cdd:TIGR01612 1121 KNLDQKIDHHIKALEEIKKKSENYIDEIK-AQINDLEDVADKAISNDDPEEIEKKIENIVTK-IDKKKNIYDEIKKLLNE 1198
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2795 LNLM------LEEVKS---SKGQ-LKELMLE--NSELKKS-------------LDCVHKDRMEEQGKMRGEI-AEYQLRL 2848
Cdd:TIGR01612 1199 IAEIekdktsLEEVKGinlSYGKnLGKLFLEkiDEEKKKSehmikameayiedLDEIKEKSPEIENEMGIEMdIKAEMET 1278
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2849 QEAENKHQALLLDTNKQHEMEIQTYREKLTSKEECLSSQKVEIDLLKSSKEELNNSLKATTEILEELKK-TKMENLKHAD 2927
Cdd:TIGR01612 1279 FNISHDDDKDHHIISKKHDENISDIREKSLKIIEDFSEESDINDIKKELQKNLLDAQKHNSDINLYLNEiANIYNILKLN 1358
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2928 KLKKENDRAQSKIKLLVKSCKQLEEE------KVMLQKELSHLEAAQEKQRAdTVVDANVDELITEMKELKE-TLEEKT- 2999
Cdd:TIGR01612 1359 KIKKIIDEVKEYTKEIEENNKNIKDEldksekLIKKIKDDINLEECKSKIES-TLDDKDIDECIKKIKELKNhILSEESn 1437
|
810
....*....|.
gi 528980992 3000 -----KEADEY 3005
Cdd:TIGR01612 1438 idtyfKNADEN 1448
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
418-708 |
4.16e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.23 E-value: 4.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 418 KARLTQELQQAKNTYNILQAELDKVTSVKQQIEKKLEEFKQNFSKTEQALQASQTKENELRRSSEEMKRENSLLKSQSEQ 497
Cdd:TIGR02169 690 LSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEE 769
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 498 RAREVCHLEEELKKAKQCLSQS-----QNFAEEMKAKNTSQETMLRDLQEKINqqENSLTLEKLKLALADLEKQRDCSQD 572
Cdd:TIGR02169 770 LEEDLHKLEEALNDLEARLSHSripeiQAELSKLEEEVSRIEARLREIEQKLN--RLTLEKEYLEKEIQELQEQRIDLKE 847
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 573 LLKKREHHIEQLNEKLSKTERESEALLSALELKKKEYEELKEEKTLFSRWKSENEQLLNQMESEKESLQSKVNHLETCLK 652
Cdd:TIGR02169 848 QIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLE 927
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 528980992 653 TQQIKSHEYNERVR-------------TLEMERENLNVEIRNLQNVIDSKTAEAETQKRAYGELQQKAE 708
Cdd:TIGR02169 928 ALEEELSEIEDPKGedeeipeeelsleDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRA 996
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
2488-3051 |
4.37e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 56.13 E-value: 4.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2488 RELKLSGENQEHVTLEAEKSKAEVETLKATVEEMDQNLRGLQLDLVNIRSDKEDLTKELQKEQSRVSELETLNSSFENLL 2567
Cdd:TIGR00618 166 KELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2568 ReKEQEKVQMKEESKAAVEMLQKELEELNEKMAALGNDQETRkvkeqSLSSQVDSLEHEKAQLLQDLDDAKSNYMILQSS 2647
Cdd:TIGR00618 246 T-QKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERI-----NRARKAAPLAAHIKAVTQIEQQAQRIHTELQSK 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2648 VNDLIQEVEDgKQKLEKKDEEISILKSQTRDQEQLVSKLSQMEGEQQLWKKQKADlenlMVELEQKIQVLQSKNDALQDT 2727
Cdd:TIGR00618 320 MRSRAKLLMK-RAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQ----QHTLTQHIHTLQQQKTTLTQK 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2728 LEALQNSSRNLEKELELTKLEKMSFVEKVNTMTVKETELQKEIHAVIQKTVALKEEFSGEK--NRLMEELNLMLEEVKSS 2805
Cdd:TIGR00618 395 LQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKleKIHLQESAQSLKEREQQ 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2806 KGQLKELMLENSELKKSLDCVHKDRMEEQGKMRGEIAEYQLRLQEAEN-----KHQALLLDTNKQHEMEIQTYREKLTSK 2880
Cdd:TIGR00618 475 LQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNpgpltRRMQRGEQTYAQLETSEEDVYHQLTSE 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2881 EECLSSQKVEIDLLK-----------SSKEELNNSLKATTEILEELK-----KTKMENLKHADKLKKENDRAQSKIKLLV 2944
Cdd:TIGR00618 555 RKQRASLKEQMQEIQqsfsiltqcdnRSKEDIPNLQNITVRLQDLTEklseaEDMLACEQHALLRKLQPEQDLQDVRLHL 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2945 KSCKQlEEEKVMLQKELSHLEAAQEKQRADTVVDANVDELITEMKELKETLEEKTKEADEYLDK---YCSLLIS--HEKL 3019
Cdd:TIGR00618 635 QQCSQ-ELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEmlaQCQTLLRelETHI 713
|
570 580 590
....*....|....*....|....*....|..
gi 528980992 3020 EKAKEMLETQVARLSSQQSKLNLRRSPLVNSL 3051
Cdd:TIGR00618 714 EEYDREFNEIENASSSLGSDLAAREDALNQSL 745
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
2156-2447 |
4.95e-07 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 55.70 E-value: 4.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2156 LMTERLKdlELDLVTIRSEKENLLKQLQE----------------KQGQASELDTLLSSLKNLLeEKEREKIQTKEEAKS 2219
Cdd:PRK05771 1 LAPVRMK--KVLIVTLKSYKDEVLEALHElgvvhiedlkeelsneRLRKLRSLLTKLSEALDKL-RSYLPKLNPLREEKK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2220 AVEMLQtqlrelTEEIAAlcDDQETWKVEEQSLDSPAQEVQQLRNNIEKLKvhldiDKKKQLQI-------LEKLKESEH 2292
Cdd:PRK05771 78 KVSVKS------LEELIK--DVEEELEKIEKEIKELEEEISELENEIKELE-----QEIERLEPwgnfdldLSLLLGFKY 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2293 QADFLKDTVENLERELKLSGENQEHVTLEAEKSK--AEVETLKATVEKMDQNLRGLQLDLVNI---------RSEKEDLT 2361
Cdd:PRK05771 145 VSVFVGTVPEDKLEELKLESDVENVEYISTDKGYvyVVVVVLKELSDEVEEELKKLGFERLELeeegtpselIREIKEEL 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2362 KELQKEQSRV-SELETLNSSFENLLREKEQEKVQMKEESKAAVEMLQT-------------QLKELSEevailCVDQETW 2427
Cdd:PRK05771 225 EEIEKERESLlEELKELAKKYLEELLALYEYLEIELERAEALSKFLKTdktfaiegwvpedRVKKLKE-----LIDKATG 299
|
330 340
....*....|....*....|....
gi 528980992 2428 K---VEEQSLDSPLEEIQ-QLRNN 2447
Cdd:PRK05771 300 GsayVEFVEPDEEEEEVPtKLKNP 323
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
2535-3039 |
5.38e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 55.80 E-value: 5.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2535 IRSDKEDLTKELQKEQSRVSELETLNSSFENLLREKEQEKVQMKEESKaavemlqkeleELNEKMAALGNDQETRKVKEQ 2614
Cdd:TIGR04523 133 KKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEK-----------EKLNIQKNIDKIKNKLLKLEL 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2615 SLSSqVDSLEHEKAQLLQDLDDAKSNYMILQSSVNDLIQEVEDGKQKLEKKDEEISILKSQtrdQEQLVSKLSQMEGEQQ 2694
Cdd:TIGR04523 202 LLSN-LKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDE---QNKIKKQLSEKQKELE 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2695 LWKKQKADLENLMVELEQKIQVLqsKNDALQDTLEALQNSSRNLEKELELTKLEKMSFVEKVNTMTVKETELQKEIHAVI 2774
Cdd:TIGR04523 278 QNNKKIKELEKQLNQLKSEISDL--NNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSE 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2775 QKTVALKEEFSgEKNRLMEELNlmlEEVKSSKGQLKELMLENSELKKSLDCVHKDRMEEQGKMRGEIAEYQLRLQEAENk 2854
Cdd:TIGR04523 356 SENSEKQRELE-EKQNEIEKLK---KENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIER- 430
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2855 hqalLLDTNKQHEMEIQTYREKLTSKEECLSSQKVEIDLLKSSKEELNNSLKATTEILEELKKTKMENLKHADKLKKEND 2934
Cdd:TIGR04523 431 ----LKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKK 506
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2935 RAQSKIKLLVKSCKQLEEEkvmlQKELSHLEAAQEKQRADTVVDANVDELITEMKELKETLEEKTKEADEYLDKYCSLLI 3014
Cdd:TIGR04523 507 ELEEKVKDLTKKISSLKEK----IEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKK 582
|
490 500
....*....|....*....|....*
gi 528980992 3015 SHEKLEKAKEMLETQVARLSSQQSK 3039
Cdd:TIGR04523 583 KQEEKQELIDQKEKEKKDLIKEIEE 607
|
|
| Macoilin |
pfam09726 |
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 ... |
360-588 |
6.23e-07 |
|
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 trasnmembrane helices, followed by a C-terminal coiled-coil region. Macoilin is a highly conserved protein present in eukaryotes. Macoilin appears to be found in the ER and be involved in the function of neurons.
Pssm-ID: 462859 [Multi-domain] Cd Length: 670 Bit Score: 55.24 E-value: 6.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 360 LEQKLKKLTEDLSCQRQNAESAR--CSLEQKIKEKEKEFQEELSRQQRSFQTLDQECTQMKARLTQELQQAKNTyniLQA 437
Cdd:pfam09726 400 LEQDIKKLKAELQASRQTEQELRsqISSLTSLERSLKSELGQLRQENDLLQTKLHNAVSAKQKDKQTVQQLEKR---LKA 476
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 438 ELDKVTSVKQQI--EKKLEEFKQNFSKTEQALQASQTKE--NELRRSSEEMKRENSLLKSQ---SEQRAREVCHLEEELK 510
Cdd:pfam09726 477 EQEARASAEKQLaeEKKRKKEEEATAARAVALAAASRGEctESLKQRKRELESEIKKLTHDiklKEEQIRELEIKVQELR 556
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 511 KAKQclsqsqnfaeemKAKNTsqETMLRDL---QEKINQQENSLTLE-KLKL----ALADLEKQRDCSQDLLKKREHHIE 582
Cdd:pfam09726 557 KYKE------------SEKDT--EVLMSALsamQDKNQHLENSLSAEtRIKLdlfsALGDAKRQLEIAQGQIYQKDQEIK 622
|
....*.
gi 528980992 583 QLNEKL 588
Cdd:pfam09726 623 DLKQKI 628
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2247-2743 |
7.22e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.31 E-value: 7.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2247 VEEQSLDSPA--QEVQQLRNNIEKLK-VHLDIDK-KKQLQILEKLKES-------EHQADFLKD-----TVENLERELKL 2310
Cdd:COG4913 213 VREYMLEEPDtfEAADALVEHFDDLErAHEALEDaREQIELLEPIRELaeryaaaRERLAELEYlraalRLWFAQRRLEL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2311 SGENQEHVTLEAEKSKAEVETLKATVEKMDQNLRGLQLDLVNI-RSEKEDLTKELQKEQSRVSELETLNSSFENLLR--- 2386
Cdd:COG4913 293 LEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLEALLAalg 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2387 ----EKEQEKVQMKEESKAAVEMLQTQLKELSEEVAILCVDQETWKVEEQSLDSPLEEIQQLRNNI-GKLKVCLDAdkkq 2461
Cdd:COG4913 373 lplpASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIpARLLALRDA---- 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2462 qlhILEKLKESEHQADFLKDTVENLERElklsgenqEHVTLEAEK---SKA-----EVETLKATVEEMDQNLRGLQLDLV 2533
Cdd:COG4913 449 ---LAEALGLDEAELPFVGELIEVRPEE--------ERWRGAIERvlgGFAltllvPPEHYAAALRWVNRLHLRGRLVYE 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2534 NIRSDKEDLTKELQKEQSRVSELETLNSSFENLLREKEQEKV----------------------QMKE------------ 2579
Cdd:COG4913 518 RVRTGLPDPERPRLDPDSLAGKLDFKPHPFRAWLEAELGRRFdyvcvdspeelrrhpraitragQVKGngtrhekddrrr 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2580 ---------ESKAAVEMLQKELEELNEKMAALGNDQETRKVKEQSLSSQ----------------VDSLEHEKAQL---L 2631
Cdd:COG4913 598 irsryvlgfDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERrealqrlaeyswdeidVASAEREIAELeaeL 677
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2632 QDLDDAKSNYMILQSSVNDLIQEVEDGKQKLEKKDEEISILKSQ----TRDQEQLVSKLSQMEGEQQLWkkQKADLENlM 2707
Cdd:COG4913 678 ERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKEleqaEEELDELQDRLEAAEDLARLE--LRALLEE-R 754
|
570 580 590
....*....|....*....|....*....|....*.
gi 528980992 2708 VELEQKIQVLQSKNDALQDTLEALQNSSRNLEKELE 2743
Cdd:COG4913 755 FAAALGDAVERELRENLEERIDALRARLNRAEEELE 790
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1874-2529 |
1.06e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.92 E-value: 1.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1874 HEGIEDDVAKVTDnwREKCLQVENEL-QRIQSEKDSMEHH-ALSAEASLEAVQTEKLYLEKDNENKQTVITCLEEGLSVV 1951
Cdd:COG4913 237 LERAHEALEDARE--QIELLEPIRELaERYAAARERLAELeYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1952 TSERDQLRGELDTLSKE-----NQELDQMSEKMKEKIRELESHQSECLHLQEWLQSLEkdsQALSLVRSELENQIEQLNK 2026
Cdd:COG4913 315 EARLDALREELDELEAQirgngGDRLEQLEREIERLERELEERERRRARLEALLAALG---LPLPASAEEFAALRAEAAA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2027 EKDSLVWESESLQTKLSESEHEKLAITKALEAALMEKGEVAVRLSSTQEEVHQLRKGIEKlrvRIEADEKKQLHVSEKLK 2106
Cdd:COG4913 392 LLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAE---ALGLDEAELPFVGELIE 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2107 eserrndslqdkVETLERELQMAEE----NQELVILDAENCKAE----VETLKTQIELMTERLKDLELDLVTIRSEKENL 2178
Cdd:COG4913 469 ------------VRPEEERWRGAIErvlgGFALTLLVPPEHYAAalrwVNRLHLRGRLVYERVRTGLPDPERPRLDPDSL 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2179 LKQLQEKQGQASE-LDTLLSSLKNLL-----EEKEREK--I----QTKE---------------------EAKSAVEMLQ 2225
Cdd:COG4913 537 AGKLDFKPHPFRAwLEAELGRRFDYVcvdspEELRRHPraItragQVKGngtrhekddrrrirsryvlgfDNRAKLAALE 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2226 TQLRELTEEIAALcddqetwkveeqsldspAQEVQQLRNNIEKLKvhldiDKKKQLQILEKLKESEHQADFLKDTVENLE 2305
Cdd:COG4913 617 AELAELEEELAEA-----------------EERLEALEAELDALQ-----ERREALQRLAEYSWDEIDVASAEREIAELE 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2306 REL-KLSGENQEHVTLEaekskAEVETLKATVEKMDQNLRGLQLDLVNIRSEKEDLTKELQKEQSRVSELE-----TLNS 2379
Cdd:COG4913 675 AELeRLDASSDDLAALE-----EQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEdlarlELRA 749
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2380 SFENLLREKEQEKV--QMKEESKAAVEMLQTQLKELSEEVAILCVD-QETWKVEEQSLDSPLEEIQQLRNnigklkvcld 2456
Cdd:COG4913 750 LLEERFAAALGDAVerELRENLEERIDALRARLNRAEEELERAMRAfNREWPAETADLDADLESLPEYLA---------- 819
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 528980992 2457 adkkqqlhILEKLKES---EHQADFlkdtvenLERELKLSGENQEHVtleAEKSKAEVETLKATVEEMDQNLRGLQ 2529
Cdd:COG4913 820 --------LLDRLEEDglpEYEERF-------KELLNENSIEFVADL---LSKLRRAIREIKERIDPLNDSLKRIP 877
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
2276-2964 |
1.34e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 54.59 E-value: 1.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2276 DKKKQLQILEKLKESEHQADFLKDTVENLERELKLSGENQEHVTLEAEKSKAEVETLKATVEKMDQNLRGLQLDLvniRS 2355
Cdd:TIGR00618 164 EKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQT---QQ 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2356 EKEDLTKELQKEQSRVSELETLNSSFENLLREKEQEKVQMKEESKAAVEMLQTQLKELSEEVAILCVDQETWKVEEQSLD 2435
Cdd:TIGR00618 241 SHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKM 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2436 SPLEEIQQLRNNIGKLKVCLDADKKQQLHILEKLKESEHQADFLKDTVENLERELKLS------GENQEHVTLEAEKSKA 2509
Cdd:TIGR00618 321 RSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTqhihtlQQQKTTLTQKLQSLCK 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2510 EVETLK---ATVEEMDQNLRGLQLDLVNIRSdkedlTKELQKEQSRVSELETLNSSFENLLREKEQEKVQMKEESKaavE 2586
Cdd:TIGR00618 401 ELDILQreqATIDTRTSAFRDLQGQLAHAKK-----QQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKER---E 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2587 MLQKELEELNEKMAALGNDQETRKVKEQSLSSQVDSLEHEKAQLLQDLDDAKSNymilQSSVNDLIQEVEDGKQKLEKKD 2666
Cdd:TIGR00618 473 QQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPL----TRRMQRGEQTYAQLETSEEDVY 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2667 EE-ISILKSQTRDQEQLVSKLSQMEGEQQLWKKQKADLENLMVELEQKIQVLQ-------SKNDALQDTLEALQNSSRNL 2738
Cdd:TIGR00618 549 HQlTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEklseaedMLACEQHALLRKLQPEQDLQ 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2739 EKELELTKLEKMSFVEKVNTMTVKETELQKEIHAVIQKTVALKEEFSGEKNRLMEELNLMLEEVKSSKGQLKELMLENSE 2818
Cdd:TIGR00618 629 DVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRE 708
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2819 LKKSLDCVHKDRMEEQGKMRGEIAEyqlrLQEAENKHQALLLDTNKQHEMEIQTYREKLTSKEECLSSQKVEIDLLKSSK 2898
Cdd:TIGR00618 709 LETHIEEYDREFNEIENASSSLGSD----LAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLA 784
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 528980992 2899 EELNNSLKATTEILEELKKTKMENLKHADKLKKENDRAQSKIKLLVKSCKQLEEEKVMLQKELSHL 2964
Cdd:TIGR00618 785 AEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQ 850
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1944-2633 |
1.45e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 54.58 E-value: 1.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1944 LEEGLSVVTSERDQLRGELDTLSKENQELDQMSEKMKEKIRELESHQSECLHLQEWLQSLEKDSQALSLVRSELEN---Q 2020
Cdd:PRK04863 364 LEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNaedW 443
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2021 IEQLNKEKDSLVWESESLQTKLSESEHEKLAITKALEAALMEKGEVAvRLSSTQEEVHQLRKGIEKlrvRIEADEKKQLh 2100
Cdd:PRK04863 444 LEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVS-RSEAWDVARELLRRLREQ---RHLAEQLQQL- 518
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2101 vSEKLKESERRNDSLQDkvetLERELQMAEENQELVILDAENCKAEVETLKTQIELMTERLKDLELDLVTIRSEKENL-- 2178
Cdd:PRK04863 519 -RMRLSELEQRLRQQQR----AERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLqa 593
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2179 ------------------LKQLQEKQGQASELDTLLSSLKNLLEEKEREKIQTKEEAKSAVEMLQTQLRELT-------E 2233
Cdd:PRK04863 594 riqrlaarapawlaaqdaLARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIERLSqpggsedP 673
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2234 EIAALCDDQETWKVEEQSLDSPAQEVQ-------QLRNNIeklkVHLDIDK-KKQLQILEKLKES----EHQADFLKDTV 2301
Cdd:PRK04863 674 RLNALAERFGGVLLSEIYDDVSLEDAPyfsalygPARHAI----VVPDLSDaAEQLAGLEDCPEDlyliEGDPDSFDDSV 749
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2302 enLERELKLSGENQEHVTLEAEKSKAEVETL--KATVEKMdqnlrglqldLVNIRSEKEDLTKELQKEQSRVSELETLNS 2379
Cdd:PRK04863 750 --FSVEELEKAVVVKIADRQWRYSRFPEVPLfgRAAREKR----------IEQLRAEREELAERYATLSFDVQKLQRLHQ 817
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2380 SFENLLREKEQekVQMKEESKAAVEMLQTQLKELSEEVAILcvDQETWKVEEQsLDSPLEEIQQLRNNIGKLKVCLDADK 2459
Cdd:PRK04863 818 AFSRFIGSHLA--VAFEADPEAELRQLNRRRVELERALADH--ESQEQQQRSQ-LEQAKEGLSALNRLLPRLNLLADETL 892
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2460 KQQLH-ILEKLKESEHQADFLK---DTVENLEREL-KLSGENQEHVTLeaeksKAEVETLKATVEEMDQNLRglqlDLVN 2534
Cdd:PRK04863 893 ADRVEeIREQLDEAEEAKRFVQqhgNALAQLEPIVsVLQSDPEQFEQL-----KQDYQQAQQTQRDAKQQAF----ALTE 963
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2535 IRSDKEDLTKElqKEQSRVSELETLNSSFENLLREKEQEKVQMKEESKAAVEMLQKELEELNEKMAALGNDQETRKVKEQ 2614
Cdd:PRK04863 964 VVQRRAHFSYE--DAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQ 1041
|
730 740
....*....|....*....|..
gi 528980992 2615 SLSS---QVDSLEHEKAQLLQD 2633
Cdd:PRK04863 1042 ELQDlgvPADSGAEERARARRD 1063
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
280-599 |
1.55e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.30 E-value: 1.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 280 LDQLKAQNQELRSKMSELELRLQGQEKEMKGQVNKLQELQLQLEKAKVELNEKEKVLNKNRDELVRTTSQYDQASAKCTA 359
Cdd:TIGR02169 697 LRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHK 776
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 360 LEQKLKKLTEDLSCQRqnaesarcslEQKIKEKEKEFQEELSRQQRSFQTLDQECTqmkaRLTQELQQAKNTYNILQAEL 439
Cdd:TIGR02169 777 LEEALNDLEARLSHSR----------IPEIQAELSKLEEEVSRIEARLREIEQKLN----RLTLEKEYLEKEIQELQEQR 842
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 440 DKVTSVKQQIEKKLEEFKQNFSKTEQALQASQTKENELRRSSEEMKRENSLLKSQSEQRAREVCHLEEELKKAKQCLSQS 519
Cdd:TIGR02169 843 IDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSEL 922
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 520 QNFAEEMKAKNTSQETMLRDLQEkinQQENSLTLEKLKL-------ALADLEKQRDCSQDLLKKREHHIEQLNEKLSKTE 592
Cdd:TIGR02169 923 KAKLEALEEELSEIEDPKGEDEE---IPEEELSLEDVQAelqrveeEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLE 999
|
....*..
gi 528980992 593 RESEALL 599
Cdd:TIGR02169 1000 EERKAIL 1006
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
2565-2743 |
1.61e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 53.30 E-value: 1.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2565 NLLREKEQEKVQMKEESKAAVEMLQKELEELNEKMAALGNDQETRKVKEQSLSSQVDSLEHEKAQLLQDLDD-AKSNY-- 2641
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGErARALYrs 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2642 --------MILQS-SVNDLIQEVEDGKQKLEKKDEeisILKSQTRDQEQLVSKLSQMEGEQQLWKKQKADLENLMVELEQ 2712
Cdd:COG3883 99 ggsvsyldVLLGSeSFSDFLDRLSALSKIADADAD---LLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEA 175
|
170 180 190
....*....|....*....|....*....|.
gi 528980992 2713 KIQVLQSKNDALQDTLEALQNSSRNLEKELE 2743
Cdd:COG3883 176 QQAEQEALLAQLSAEEAAAEAQLAELEAELA 206
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1940-2997 |
1.63e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 54.28 E-value: 1.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1940 VITCLEEGLSVVTSERDQLRGELD---TLSKENQELDQMSEKMKEKIRELESHQSEclhlqewLQSLEKDSQALSLVRSE 2016
Cdd:TIGR00606 153 VIFCHQEDSNWPLSEGKALKQKFDeifSATRYIKALETLRQVRQTQGQKVQEHQME-------LKYLKQYKEKACEIRDQ 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2017 L---ENQIEQLNKEKDSLVWESESLQTKLSESEHEKLAItkaleaalMEKGEVAVRLSSTQEEVHQLRKGIEKLRVRIEA 2093
Cdd:TIGR00606 226 ItskEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKI--------MKLDNEIKALKSRKKQMEKDNSELELKMEKVFQ 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2094 DEKKQLHVSEKLKESERRndSLQDKVETLERELQmaEENQELVILDAENCKAEVETLKTQIELMTERLKDLELDLVTIRS 2173
Cdd:TIGR00606 298 GTDEQLNDLYHNHQRTVR--EKERELVDCQRELE--KLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSL 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2174 EKENLLKQLQEKQGQASELDTLLSSLKNLLEEKEREKIQTKEEAKSAVEMLQTQLRELTEEIAALCDDQETWKVEEQsld 2253
Cdd:TIGR00606 374 ATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILE--- 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2254 spaQEVQQLRNnieklkvhldidKKKQLQILEKlkesehqadflkdtveNLERELKLsgeNQEHVTLEAEKSKAEVETLK 2333
Cdd:TIGR00606 451 ---KKQEELKF------------VIKELQQLEG----------------SSDRILEL---DQELRKAERELSKAEKNSLT 496
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2334 ATVEKMDQNLRGLQLDLVNIRSEKEDLTKELQKEQSRVSELETLNssfenllREKEQEKVQMKEESKAAVEMLQTQLKEL 2413
Cdd:TIGR00606 497 ETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLT-------KDKMDKDEQIRKIKSRHSDELTSLLGYF 569
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2414 SEEvailcvdqetwKVEEQSLDSPLEEIQQLRNNIGKLKVCLDADKKQQLHILEKLKESEHQADFLKDTV---------- 2483
Cdd:TIGR00606 570 PNK-----------KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLfdvcgsqdee 638
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2484 ---ENLERELKLSGENQ--------------EHVTLEAEKSKAEVETLKATVEEMDQNLRGLQLDLVNIRSDKEDLTKEL 2546
Cdd:TIGR00606 639 sdlERLKEEIEKSSKQRamlagatavysqfiTQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESEL 718
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2547 QKEQSRVSELETLNSSFENLLREKEQEKVQMKEESKAAVEMLQKELEELNEKMAALGNDQETRKVKE---------QSLS 2617
Cdd:TIGR00606 719 KKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKvcltdvtimERFQ 798
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2618 SQVDSLEHEKAQLLQDLDDAKsnymiLQSSVNDLIQEVEDGKQKLEKKDEEISILKSQTRDQEQ----LVSKLSQMEGEQ 2693
Cdd:TIGR00606 799 MELKDVERKIAQQAAKLQGSD-----LDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEqiqhLKSKTNELKSEK 873
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2694 QLWKKQKADLENLMVELEQKIQVLQSKNDALQDTLEALQNSSRNLEKELEltklEKMSFVEKVNTmtvketelqkeihav 2773
Cdd:TIGR00606 874 LQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQ----EKEELISSKET--------------- 934
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2774 iqktvalkeefsgEKNRLMEELNLMLEEVKSSKGQLKELMlenSELKKSLDCVHKDRMEEQGKMRGEIAEYQLRLQEAEN 2853
Cdd:TIGR00606 935 -------------SNKKAQDKVNDIKEKVKNIHGYMKDIE---NKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINE 998
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2854 KHQALLLDTNKQHEMEiQTYREKLTskeeclssQKVEIDLLKSSKEELNNSLKAtteiLEELKKTKMENlkHADKLKKEN 2933
Cdd:TIGR00606 999 DMRLMRQDIDTQKIQE-RWLQDNLT--------LRKRENELKEVEEELKQHLKE----MGQMQVLQMKQ--EHQKLEENI 1063
|
1050 1060 1070 1080 1090 1100
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 528980992 2934 DRAQSKIKLLVKSCKQLEEEKVMLQKELSHLEA--AQEKQRADTVVDANVDELITEMKELKETLEE 2997
Cdd:TIGR00606 1064 DLIKRNHVLALGRQKGYEKEIKHFKKELREPQFrdAEEKYREMMIVMRTTELVNKDLDIYYKTLDQ 1129
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1889-2221 |
2.04e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 2.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1889 REKCLQVENELQRIQSEKDSMEHHALS-------AEASLEAVQTEKLYLEKDNENKQTVITCLEEGLSVVTSERDQLRGE 1961
Cdd:TIGR02169 680 RERLEGLKRELSSLQSELRRIENRLDElsqelsdASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSE 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1962 LDTLSKENQELDQMSEKMKEKIRELESH------------------------------QSECLHLQEWLQSLEKDSQALS 2011
Cdd:TIGR02169 760 LKELEARIEELEEDLHKLEEALNDLEARlshsripeiqaelskleeevsriearlreiEQKLNRLTLEKEYLEKEIQELQ 839
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2012 LVRSELENQIEQLNKEKDSLVWESESLQTKLSESEheklaitkaleaalmekgevaVRLSSTQEEVHQLRKGIEKLRVRI 2091
Cdd:TIGR02169 840 EQRIDLKEQIKSIEKEIENLNGKKEELEEELEELE---------------------AALRDLESRLGDLKKERDELEAQL 898
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2092 EADEKKQLHVSEKLKESERRNDSLQDKVETLERELQMAEENQELVILDAEnCKAEVETLKTQIELMTERLKDLELDLVTI 2171
Cdd:TIGR02169 899 RELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPE-EELSLEDVQAELQRVEEEIRALEPVNMLA 977
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 528980992 2172 RSEKENLLKQLQEKQGQASELDTLLSSLKNLLEEKEREKIQTKEEAKSAV 2221
Cdd:TIGR02169 978 IQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFMEAFEAI 1027
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
20-594 |
2.05e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.79 E-value: 2.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 20 IQELEGQLDKLKKERQQ-----------RQFQLETLEAALQKQKQKVENEKTEGANLKRENQSLMEICENLEKTKQKISH 88
Cdd:COG1196 195 LGELERQLEPLERQAEKaeryrelkeelKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 89 ELQVKESQVNFQEGQLNSSKKQIEKLEQELKRCKSELERSQQAAQSADVSLnscltpqkifatpltpsqyysgskyEDLK 168
Cdd:COG1196 275 ELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEEL-------------------------AELE 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 169 EKYNKEVEERKRLEAEVKALQAKKASQtipQSTMNHRDIARHQASSSVFSWQQEktpsrlssntlktpvRRDFSASHFSG 248
Cdd:COG1196 330 EELEELEEELEELEEELEEAEEELEEA---EAELAEAEEALLEAEAELAEAEEE---------------LEELAEELLEA 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 249 EQEVTPSRSTLQIGKTDANSSFCDNSSNSHLLDQLKAQNQELRSKMSELELRLQGQEKEMKGQVNKLQELQLQLEKAKVE 328
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 329 LNEKEKVLNKNRDELVRTTSQYD------------QASAKCTALEQKLKKLTEDLSCQRQ----------NAESARCSLE 386
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLllleaeadyegfLEGVKAALLLAGLRGLAGAVAVLIGveaayeaaleAALAAALQNI 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 387 QKIKEKEKEFQEELSRQQR----SFQTLDQECTQMKARLTQELQQAKNTYNILQAELDKVTSVKQQIEKKLEEFKQNFSK 462
Cdd:COG1196 552 VVEDDEVAAAAIEYLKAAKagraTFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAAR 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 463 TEQALQASQTKENELRRSSEEMKRENSLLKSQSEQRAREVCHLEEELKKAKQCLSQSQNFAEEMKAKNTSQETMLRDLQE 542
Cdd:COG1196 632 LEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAE 711
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 528980992 543 KINQQENSLTLEKLKLALADLEKQRDCSQDLLKKREHHIEQLNEKLSKTERE 594
Cdd:COG1196 712 AEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLE 763
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1794-2225 |
2.50e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 53.58 E-value: 2.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1794 QKVENLLNEIK-ELDSKFHLLEVQLTTKIEACVALEKIVEELKKEKLDLNEKLESFSCHNQREESSGGLTSNLeMVTSKF 1872
Cdd:pfam15921 429 QRLEALLKAMKsECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDL-TASLQE 507
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1873 PHEGIEDDVAKVTDNWREKCLQVEnELQRIQSEKDSMEHHALSAEA-SLEAVQTEKLY--LEKDNENKQTVITCLEEGLS 1949
Cdd:pfam15921 508 KERAIEATNAEITKLRSRVDLKLQ-ELQHLKNEGDHLRNVQTECEAlKLQMAEKDKVIeiLRQQIENMTQLVGQHGRTAG 586
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1950 VVTSERDQLRGELDTLSKENQELDQMSEKMKEKIRELESHQSEclhlqewlqsLEKDSQALSLVRSELENQIEQLNKEKD 2029
Cdd:pfam15921 587 AMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSD----------LELEKVKLVNAGSERLRAVKDIKQERD 656
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2030 SLVWESESLQTKLS----ESEHEKLAITKALEAALMEKGEVAVRLSSTQEEVHQLRKGIEKLRVRIEADEKKQLHVSEKL 2105
Cdd:pfam15921 657 QLLNEVKTSRNELNslseDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQI 736
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2106 KESERRNDSLQDKVETLERELQMAEENQELVILDAENCKAEVETLKTQIELMTERLKdleldlvTIRSEKENLLKQLQEK 2185
Cdd:pfam15921 737 TAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELE-------VLRSQERRLKEKVANM 809
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 528980992 2186 QGQASELDTLLSSLKNLLEEKEREKIQTKEEAKSAVEMLQ 2225
Cdd:pfam15921 810 EVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKELQ 849
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
18-675 |
2.52e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 53.69 E-value: 2.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 18 QKIQELEGQLDKLKKERQQRQFQLETLEA-ALQKQKQKVENEKTEGANL---KRENQSLMEICENLEKTKQKISHELQVK 93
Cdd:pfam12128 301 EKRDELNGELSAADAAVAKDRSELEALEDqHGAFLDADIETAAADQEQLpswQSELENLEERLKALTGKHQDVTAKYNRR 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 94 ESQVNFQegqlnsSKKQIEKLEQELKRCKSELERSQQAAQSADVSLNSCLTPQKIFATpltpsqyysgSKYEDLKEKYNK 173
Cdd:pfam12128 381 RSKIKEQ------NNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEAGK----------LEFNEEEYRLKS 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 174 EVEERKRLEAEVKALQAKKASQTIPQSTMNHRDIARHQASSSVFSWQQEKTPSR-LSSNTLKTPVRRDFSASHFSG---- 248
Cdd:pfam12128 445 RLGELKLRLNQATATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARkRRDQASEALRQASRRLEERQSalde 524
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 249 -EQEVTPSRSTL----------------------QIGKTDANSSFCDNSSNSHL--------LDQLK-----AQNQELRS 292
Cdd:pfam12128 525 lELQLFPQAGTLlhflrkeapdweqsigkvispeLLHRTDLDPEVWDGSVGGELnlygvkldLKRIDvpewaASEEELRE 604
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 293 KMSELELRLQGQEKEMKGQVNKLQELQLQLEKAKVELNEKEKVLNKNRDELVRTTSQYDQASAKCtaleqklkklTEDLS 372
Cdd:pfam12128 605 RLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKK----------NKALA 674
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 373 CQRQNAESARCSLEQKIKEKEKEFQEELSRQQRSFQTLDqecTQMKARLtQELQQAKNtynilqaelDKVTSVKQQIEKK 452
Cdd:pfam12128 675 ERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREAR---TEKQAYW-QVVEGALD---------AQLALLKAAIAAR 741
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 453 LEEFKQNFSKTEQALQASQTK-----ENELRRSSEEMKRENSLlkSQSEQRAREVCHLEEELKkaKQCLSQSQNFAEEMK 527
Cdd:pfam12128 742 RSGAKAELKALETWYKRDLASlgvdpDVIAKLKREIRTLERKI--ERIAVRRQEVLRYFDWYQ--ETWLQRRPRLATQLS 817
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 528 AKNTSQETMLRDLQEKInqqensltlEKLKLALADLEKQRDCSQDLLkkrehhiEQLNEKLSKTERESEALLSALELKKK 607
Cdd:pfam12128 818 NIERAISELQQQLARLI---------ADTKLRRAKLEMERKASEKQQ-------VRLSENLRGLRCEMSKLATLKEDANS 881
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 528980992 608 EYEELKEEKTLfsrwkSENEQLLNQMESEKESLQSKVNHLETClktqqIKSHEYNERVRTLEMERENL 675
Cdd:pfam12128 882 EQAQGSIGERL-----AQLEDLKLKRDYLSESVKKYVEHFKNV-----IADHSGSGLAETWESLREED 939
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1930-2491 |
2.69e-06 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 53.37 E-value: 2.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1930 LEKDNENKQTVITCLEEGLSVVTSERDQLRGELDTLSKENQELDQMSEKMKEKIRELESHQSECLHLQEWLQSLEKDSQA 2009
Cdd:PRK01156 164 LERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2010 LSlVRSELENQIEQLNKEKDSLVWESESLQTKLSESEHEKLAITKALEAALMEKGEVAVRLSSTQEEVHQLRKGIEKLRV 2089
Cdd:PRK01156 244 LS-SLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEIN 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2090 RIEADEKKqLHVSEKLKESERRNDSLQDKVETLERELQMAEENQELVILDAENCKAEVETLKTQIELM----TERLKDLE 2165
Cdd:PRK01156 323 KYHAIIKK-LSVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMsafiSEILKIQE 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2166 LDLVTIRSEKENLLKQLQEKQGQASELDTLLSSLKNLLEEKEREkiQTKEEAKSAVEMLQTQLRELTEEIAALCDDQETW 2245
Cdd:PRK01156 402 IDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRN--MEMLNGQSVCPVCGTTLGEEKSNHIINHYNEKKS 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2246 KVEEQsLDSPAQEVQQLRNNIEKLKVHLDIDKKKQLQILE----KLKESEHQ-ADFLKDTVENLERELKLSGENQEHVTL 2320
Cdd:PRK01156 480 RLEEK-IREIEIEVKDIDEKIVDLKKRKEYLESEEINKSIneynKIESARADlEDIKIKINELKDKHDKYEEIKNRYKSL 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2321 EAEKSKAEVETLKATVEKMDqnlrglQLDLVNIRSEKEDLTKELQKEQSRVSELET----LNSSFENLLREKEQE----- 2391
Cdd:PRK01156 559 KLEDLDSKRTSWLNALAVIS------LIDIETNRSRSNEIKKQLNDLESRLQEIEIgfpdDKSYIDKSIREIENEannln 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2392 -KVQMKEESKAAVEMLQTQLKELSEEVAILcvdqetwKVEEQSLDSPLEEIQQLRNNIGKLKVCLDADKKQQLHILEKLK 2470
Cdd:PRK01156 633 nKYNEIQENKILIEKLRGKIDNYKKQIAEI-------DSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIE 705
|
570 580
....*....|....*....|.
gi 528980992 2471 ESEHQADFLKDTVENLERELK 2491
Cdd:PRK01156 706 ILRTRINELSDRINDINETLE 726
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
2325-2598 |
2.93e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 53.01 E-value: 2.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2325 SKAEVETLKatvEKMDQNLRGLQ-LDLVNIRSEKEDL----TKELQKEQSRVSE-LETLNSSFENL-LREKEQEKVQMKE 2397
Cdd:PRK05771 7 KKVLIVTLK---SYKDEVLEALHeLGVVHIEDLKEELsnerLRKLRSLLTKLSEaLDKLRSYLPKLnPLREEKKKVSVKS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2398 eskaavemlqtqLKELSEEVAilcvdqETWKVEEQSLDSPLEEIQQLRNNIGKLkvcldadkKQQLHILEKLKESEHQAD 2477
Cdd:PRK05771 84 ------------LEELIKDVE------EELEKIEKEIKELEEEISELENEIKEL--------EQEIERLEPWGNFDLDLS 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2478 FLKDTvENLEREL-KLSGENQEHVTLEAEKSKAE-VETLKATVeemdqnlrglQLDLVNIRSDKEDLTKELQKEQsrVSE 2555
Cdd:PRK05771 138 LLLGF-KYVSVFVgTVPEDKLEELKLESDVENVEyISTDKGYV----------YVVVVVLKELSDEVEEELKKLG--FER 204
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 528980992 2556 LETLNS-SFENLLREKEQEkvqmKEESKAAVEMLQKELEELNEK 2598
Cdd:PRK05771 205 LELEEEgTPSELIREIKEE----LEEIEKERESLLEELKELAKK 244
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2072-2605 |
3.00e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.38 E-value: 3.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2072 STQEEVHQLRKGIEKLRvRIEA---DEKKQLHVSEKLKESERRNDSLQDKVETLERELQM-----AEENQELVILDAENC 2143
Cdd:COG4913 222 DTFEAADALVEHFDDLE-RAHEaleDAREQIELLEPIRELAERYAAARERLAELEYLRAAlrlwfAQRRLELLEAELEEL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2144 KAEVETLKTQIELMTERLKDLELDLVTIR--------SEKENLLKQLQEKQGQASELDTLLSSLKNLLEEKEREKIQTKE 2215
Cdd:COG4913 301 RAELARLEAELERLEARLDALREELDELEaqirgnggDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAE 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2216 EAKSAVEMLQTQLRELTEEIAALCDDQETWKVEEQSLDSPAQEVQQLRNNIEKLKVHLDidkKKQLQILEKLKES----- 2290
Cdd:COG4913 381 EFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIP---ARLLALRDALAEAlglde 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2291 --------------------------------------EHQADFLKdTVENLERELKLSGENQEHVTLEAEKSKAEVETL 2332
Cdd:COG4913 458 aelpfvgelievrpeeerwrgaiervlggfaltllvppEHYAAALR-WVNRLHLRGRLVYERVRTGLPDPERPRLDPDSL 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2333 katVEKMD----------QNLRGLQLDLVNIRSEkedltKELQKEQSRVSELETLNSSFEnlLREKEQEKVQMKE----- 2397
Cdd:COG4913 537 ---AGKLDfkphpfrawlEAELGRRFDYVCVDSP-----EELRRHPRAITRAGQVKGNGT--RHEKDDRRRIRSRyvlgf 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2398 ESKAAVEMLQTQLKELSEEVAilcvdqetwkveeqSLDSPLEEIQQLRNNIgklkvcldADKKQQLHILEKLKESEHQAD 2477
Cdd:COG4913 607 DNRAKLAALEAELAELEEELA--------------EAEERLEALEAELDAL--------QERREALQRLAEYSWDEIDVA 664
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2478 FLKDTVENLEREL-KLSGENQEHVTLEaekskAEVETLKATVEEMDQNLRGLQLDLVNIRSDKEDLTKELQKEQSRVSEL 2556
Cdd:COG4913 665 SAEREIAELEAELeRLDASSDDLAALE-----EQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAA 739
|
570 580 590 600
....*....|....*....|....*....|....*....|....*....
gi 528980992 2557 ETLNSSFENLLREKEQEKVQMKEESKAAVEMLQKELEELNEKMAALGND 2605
Cdd:COG4913 740 EDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEE 788
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
2484-3049 |
3.35e-06 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 52.90 E-value: 3.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2484 ENLERELKLSGENQEHVTLEAEKSKAEVETLKATVEEM--------------DQNLRGLqLDLVNIRSDKEDLTKELQKE 2549
Cdd:pfam10174 105 EDKFSTPELTEENFRRLQSEHERQAKELFLLRKTLEEMelrietqkqtlgarDESIKKL-LEMLQSKGLPKKSGEEDWER 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2550 QSRVSELETLNSSFENLLREKEQEKVQMKEESK---------AAVEMLQKELEELNEKMAALGNDQETRKVKEQSLSSQV 2620
Cdd:pfam10174 184 TRRIAEAEMQLGHLEVLLDQKEKENIHLREELHrrnqlqpdpAKTKALQTVIEMKDTKISSLERNIRDLEDEVQMLKTNG 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2621 DSLEHEKAQLLQDLDDAKSNYMILQSSVNDLIQEVEDGKQKLEKKDEEISILKSQTRDQEQLVSKLSQ-MEGEQQLWKKQ 2699
Cdd:pfam10174 264 LLHTEDREEEIKQMEVYKSHSKFMKNKIDQLKQELSKKESELLALQTKLETLTNQNSDCKQHIEVLKEsLTAKEQRAAIL 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2700 KADLENLMVELEQKIQVLQSKNDALQDTLE---ALQNSSRNLEKELELTKLEKMSFVEKVNTMTVKETELQKEIHAVIQK 2776
Cdd:pfam10174 344 QTEVDALRLRLEEKESFLNKKTKQLQDLTEeksTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKER 423
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2777 TVALK-------------EEFSGEKNRLMEELNLMLE-EVKSSKGQLKELMLENSELKKSLDCVHKDrMEEQGKMRGEIA 2842
Cdd:pfam10174 424 VKSLQtdssntdtalttlEEALSEKERIIERLKEQRErEDRERLEELESLKKENKDLKEKVSALQPE-LTEKESSLIDLK 502
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2843 EYQLRLQEAENKHQALLldtnKQHEMEIQTyrekltSKEECLssqKVEIDLLKSSKEELNNslKATTEILEELKKTKMEN 2922
Cdd:pfam10174 503 EHASSLASSGLKKDSKL----KSLEIAVEQ------KKEECS---KLENQLKKAHNAEEAV--RTNPEINDRIRLLEQEV 567
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2923 LKHADklkkENDRAQSKIKLLVKSCKQLEEEKVMLQKELSHLEAAQEKQRAD-TVVDANVDELITEM-KELKETLEEKTK 3000
Cdd:pfam10174 568 ARYKE----ESGKAQAEVERLLGILREVENEKNDKDKKIAELESLTLRQMKEqNKKVANIKHGQQEMkKKGAQLLEEARR 643
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 528980992 3001 EADEYLDKYCSLLISH--EKLEKAKEMLETQVARLSSQQSKLNLRRSPLVN 3049
Cdd:pfam10174 644 REDNLADNSQQLQLEElmGALEKTRQELDATKARLSSTQQSLAEKDGHLTN 694
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
884-1154 |
3.68e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.02 E-value: 3.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 884 RISKLQEDTSVHQNVVAETLAALESKERELQLLNEKLETEQAETGELKKNNHLLQESLKELQFLSETLSLEKKELNSIIS 963
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 964 LNKKDIEELTQENGTLKEINATLTQEKMNLLQKTESFSNCIDERDRSISELSNQYKQERLTLLQRCEETGNAFQDLSEKY 1043
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1044 KAVQEKNSKLECLLSECTGVcEDRKNELGQLKETFAREHQAFVSQLALAEERNQNLIVELETVQQALQSEITDIQnSSKR 1123
Cdd:COG1196 393 RAAAELAAQLEELEEAEEAL-LERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLA-ELLE 470
|
250 260 270
....*....|....*....|....*....|.
gi 528980992 1124 ETDGLKQEIMNLKEEQNKMQQEVSALLQENE 1154
Cdd:COG1196 471 EAALLEAALAELLEELAEAAARLLLLLEAEA 501
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
2440-3043 |
5.07e-06 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 52.60 E-value: 5.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2440 EIQQLRNNIGKLKVCLD---ADKKQQLHILEKLKESEHQADFLKDTVENLERELKLSGENQEHVTLEAEKSKAEVETLKA 2516
Cdd:PRK01156 160 EINSLERNYDKLKDVIDmlrAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKS 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2517 TVEEMDQNL---RGLQLDLVNIRSDKEDLTKELQKEQSRVSELETLNSSFENLLREKEQEKVQMKEESKAAVEMLQKELE 2593
Cdd:PRK01156 240 ALNELSSLEdmkNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNIDA 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2594 ELNEKMAALGNDQETRKVKEQSL--SSQVDSLEHEkaqlLQDLDDAKSNYMILQSSVNDLIQEVEDGKQKLEKKDEEIS- 2670
Cdd:PRK01156 320 EINKYHAIIKKLSVLQKDYNDYIkkKSRYDDLNNQ----ILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISe 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2671 ILKSQTRDQEQLVSKLSQMEGEQQlwkkqkadlenlmvELEQKIQVLQSKNDALQDTLEALQnssrnlekeleltklEKM 2750
Cdd:PRK01156 396 ILKIQEIDPDAIKKELNEINVKLQ--------------DISSKVSSLNQRIRALRENLDELS---------------RNM 446
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2751 SFVEKVNTMTVKETELQKEihaviqKTVALKEEFSGEKNRLMEELNLMLEEVKSSKGQLKEL--MLENSELKKSLDCVHK 2828
Cdd:PRK01156 447 EMLNGQSVCPVCGTTLGEE------KSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLkkRKEYLESEEINKSINE 520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2829 DRMEEQgkMRGEIAEYQLRLQEAENKHQALLLDTNKQHEMEIQTYREKLTSKEECLSS-QKVEIDLLKSSKEE----LNN 2903
Cdd:PRK01156 521 YNKIES--ARADLEDIKIKINELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNALAViSLIDIETNRSRSNEikkqLND 598
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2904 SLKATTEILEELKKTKMENLKHADKLKKENDRAQSKIKLLVKSCKQLEEekvmLQKELSHLEaaqekqradtvvdanvdE 2983
Cdd:PRK01156 599 LESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEK----LRGKIDNYK-----------------K 657
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2984 LITEMKELKETLEEKTKEADEYLDKYCSLLISHEKLEKAKEMLETQVARLSSQQSKLNLR 3043
Cdd:PRK01156 658 QIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDR 717
|
|
| CENP-F_leu_zip |
pfam10473 |
Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, ... |
1888-2031 |
7.61e-06 |
|
Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance.
Pssm-ID: 463102 [Multi-domain] Cd Length: 140 Bit Score: 48.06 E-value: 7.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1888 WREKCLQVENELQRIQSEKDSMEHHALSAEASLEAVQTEKLYLEKDNENKQTVITCLEEGLSVVTSERDQLRGELDTLSK 1967
Cdd:pfam10473 1 DEKKQLHVLEKLKESERKADSLKDKVENLERELEMSEENQELAILEAENSKAEVETLKAEIEEMAQNLRDLELDLVTLRS 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 528980992 1968 ENQELDQMSEKMKEKIRELESHQSECLHLqewlqsLEKDSQALSLVRSELENQIEQLNKEKDSL 2031
Cdd:pfam10473 81 EKENLTKELQKKQERVSELESLNSSLENL------LEEKEQEKVQMKEESKTAVEMLQTQLKEL 138
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
19-717 |
8.09e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.94 E-value: 8.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 19 KIQELEGQLDKLKKERQQRQFQLETLEAALQKQKQKVENEKTEGANLKRENQSLM-------EICENLEKTKQKISHELQ 91
Cdd:TIGR04523 34 EEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNdklkknkDKINKLNSDLSKINSEIK 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 92 VKESQVNFQEGQLNSSKKQIEKLEQELKRCKSELERSQqaaqsadvslnscltpqkifatpltpsqyysgSKYEDLKEKY 171
Cdd:TIGR04523 114 NDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKE--------------------------------KELEKLNNKY 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 172 NKEVEERKRLEAEVKALQAKKASQTIPQSTMNHRDIARHQASSSVFSWQQEKTPSRLSSNTLKtpvrrdfsashfSGEQE 251
Cdd:TIGR04523 162 NDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELK------------KQNNQ 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 252 VTPSRSTLQIGKTDANSSFcdnSSNSHLLDQLKAQNQELRSKMSELELRLQGQEKEMKGQVNKLQELQLQLEKAKvelNE 331
Cdd:TIGR04523 230 LKDNIEKKQQEINEKTTEI---SNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLN---NQ 303
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 332 KEKVLNKN-RDELVRTTSQYDQASAKCTALEQKLKKLTE---DLSCQRQNAESARCSLEQKIKEKEKEFQEELSRQQRSF 407
Cdd:TIGR04523 304 KEQDWNKElKSELKNQEKKLEEIQNQISQNNKIISQLNEqisQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYK 383
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 408 QTLdQECTQMKARLTQELQQAKNTYNILQAELDKVTSVKQQIEKKLEEFKQNFSKTEQALQASQTKENELRRSSEEMKRE 487
Cdd:TIGR04523 384 QEI-KNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNT 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 488 NSLLKSQSEQRAREVCHLEEELKKAKQCLSQSQNFAEEMKAKNTSQETMLRDLQEKI-----NQQENSLTLEKLKLALAD 562
Cdd:TIGR04523 463 RESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKIsslkeKIEKLESEKKEKESKISD 542
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 563 LEKQRDCSQDLLKKR--EHHIEQLNEKLSKTERESEALLSALELKKKEYEELKEEKTLFSRWKSENEQLLNQMESEKESL 640
Cdd:TIGR04523 543 LEDELNKDDFELKKEnlEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKA 622
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 528980992 641 QSKVNHLETCLKTQQIKSHEYNERVRTLEMEREnlnvEIRNLQNVIDSKTAEAETQKRAYGELQQKAEFSDQKHEKE 717
Cdd:TIGR04523 623 KKENEKLSSIIKNIKSKKNKLKQEVKQIKETIK----EIRNKWPEIIKKIKESKTKIDDIIELMKDWLKELSLHYKK 695
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
281-778 |
9.64e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.68 E-value: 9.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 281 DQLKAQNQELRSKMSELELRLQGQEKEMKGQVNKLQELQLQLEKAKVELNEKEKV--LNKNRDELVRTTSQYDQASAKCT 358
Cdd:PTZ00121 1339 EEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAdeAKKKAEEDKKKADELKKAAAAKK 1418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 359 ALEQKLKKLTEDLSCQ--RQNAESARCSLEQKIKEKEKEFQEELSRQQRSFQTLDQECTQMK-ARLTQELQQAKNTYNIL 435
Cdd:PTZ00121 1419 KADEAKKKAEEKKKADeaKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEeAKKADEAKKKAEEAKKK 1498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 436 QAELDKVTSVKQQIE--KKLEEFKqnfsKTEQALQASQTKENELRRSSEEMKRENSLLKSQSEQRAREVCHLEEElKKAK 513
Cdd:PTZ00121 1499 ADEAKKAAEAKKKADeaKKAEEAK----KADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEA-KKAE 1573
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 514 QCLSQSQNFAEEMKA--KNTSQETMLRDLQEKINQQENSLTLEKLKLALADLEKQRDCSQDllkkrehhIEQLNEKLSKT 591
Cdd:PTZ00121 1574 EDKNMALRKAEEAKKaeEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKK--------VEQLKKKEAEE 1645
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 592 ERESEALLSALELKKKEYEELKEEKtlfSRWKSENEQLLNQMESEKESLQSKVNHLETCLKTQQIKSHEYNERVRTLEME 671
Cdd:PTZ00121 1646 KKKAEELKKAEEENKIKAAEEAKKA---EEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELK 1722
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 672 RENlnveirnlqnviDSKTAEAETQKRAYGELQQKAEfsDQKHEKEIENmclKISHLTGQVEDLEHKLQLLSSEIMDKDQ 751
Cdd:PTZ00121 1723 KAE------------EENKIKAEEAKKEAEEDKKKAE--EAKKDEEEKK---KIAHLKKEEEKKAEEIRKEKEAVIEEEL 1785
|
490 500
....*....|....*....|....*..
gi 528980992 752 RYQDLHAESESLRDLLKSRDSSAMTIE 778
Cdd:PTZ00121 1786 DEEDEKRRMEVDKKIKDIFDNFANIIE 1812
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2588-2809 |
9.81e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 9.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2588 LQKELEELNEKMAALGNDQETRKVKEQSLSSQVDSLEHEKAQLLQDLDDAKSNYMILQSSVNDLIQEVEDGKQKLEKKDE 2667
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2668 EISIL-----KSQTRDQEQLV---SKLSQMEGEQQLWKKQKADLENLMVELEQKIQVLQSKNDALQDTLEALQNSSRNLE 2739
Cdd:COG4942 105 ELAELlralyRLGRQPPLALLlspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELE 184
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 528980992 2740 KELELTKLEKMSFVEKVNTMTVKETELQKEIHAVIQKTVALKEEFSGEKNRLMEELNLMLEE-VKSSKGQL 2809
Cdd:COG4942 185 EERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAgFAALKGKL 255
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
273-968 |
1.06e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.68 E-value: 1.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 273 NSSNSHLLDQLKAQNQELRSKMSELELRLQGQEKEMKGQVNKLQELQLQLEKAKVELNEKEKVLNKNRDELVRttsQYDQ 352
Cdd:PTZ00121 1250 NNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKK---KAEE 1326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 353 ASAKCTALEQKLKKLTEDLSCQRQNAESARCSLEQKIKEKEKEFQEELSRQQRSfqtldqECTQMKARLTQELQQAKNTY 432
Cdd:PTZ00121 1327 AKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKA------DAAKKKAEEKKKADEAKKKA 1400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 433 NILQAELDKVTSvKQQIEKKLEEFKQNFSKTEQALQASQTKE-----NELRRSSEEMKR-ENSLLKSQSEQRAREVCHLE 506
Cdd:PTZ00121 1401 EEDKKKADELKK-AAAAKKKADEAKKKAEEKKKADEAKKKAEeakkaDEAKKKAEEAKKaEEAKKKAEEAKKADEAKKKA 1479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 507 EELKKA---KQCLSQSQNFAEEMKAKNTSQETM--LRDLQEKINQQENSLTLEKLKLALADLEKQRDCSQDLLK----KR 577
Cdd:PTZ00121 1480 EEAKKAdeaKKKAEEAKKKADEAKKAAEAKKKAdeAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKaeelKK 1559
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 578 EHHIEQLNEKLSKTERESEALLSALELKKKEYEELKEEKTLFSRWKSENEQLLNQMESEKESLQSKVNHLETCLKTQQIK 657
Cdd:PTZ00121 1560 AEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLK 1639
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 658 SHEYNERVRTLEMERENLNVEIRNLQnvidsKTAEAETQKRAYGELQQKAEFSDQKHE--KEIENMCLKISHLTGQVEDL 735
Cdd:PTZ00121 1640 KKEAEEKKKAEELKKAEEENKIKAAE-----EAKKAEEDKKKAEEAKKAEEDEKKAAEalKKEAEEAKKAEELKKKEAEE 1714
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 736 EHKLQLLSSEIMDKDQRYQDLHAESESlrdllKSRDSSAMTIEPHQRSRLAfEQQSALNNSFANIIGEQESVPSE---RS 812
Cdd:PTZ00121 1715 KKKAEELKKAEEENKIKAEEAKKEAEE-----DKKKAEEAKKDEEEKKKIA-HLKKEEEKKAEEIRKEKEAVIEEeldEE 1788
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 813 RCHVATDQSPKSSSMLQNRVVSLEFSLESQKQMNSDLQKQCEEL--VQIKGEIEENLMKAEQMHQSFVAETSQRISKLQE 890
Cdd:PTZ00121 1789 DEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIkeVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEA 1868
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 528980992 891 DTSVHQNVVAETLAALESKERELQLLNEKLETEQAETGELKKNNHLLQESLKELQFLSETLSLEKKElnsIISLNKKD 968
Cdd:PTZ00121 1869 DFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREIPNNNMAGKNNDIIDDKLDKDEYIKRDAEETREE---IIKISKKD 1943
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
2515-2794 |
1.08e-05 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 51.44 E-value: 1.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2515 KATVEEMDQNLRGLQLDLVNIRSDKEDLTKELQKEQSRVSELETLNSSFEN------LLREKEQEKVQMKEESKAAVEML 2588
Cdd:PLN02939 89 KSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDFQLEDLVGMIQNaeknilLLNQARLQALEDLEKILTEKEAL 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2589 QKELEELNEKMAALGNDQET---RKVKEQSLSSQVDSLEHEKAQ-----------LLQDLDDAKSNYMILQSSVNDL--- 2651
Cdd:PLN02939 169 QGKINILEMRLSETDARIKLaaqEKIHVEILEEQLEKLRNELLIrgateglcvhsLSKELDVLKEENMLLKDDIQFLkae 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2652 IQEVEDGKQKLEKKDEEISILKSQTRDQE-------QLVSKLSQMEGEqQLWKKqkadLENLMVEL-------EQKIQVL 2717
Cdd:PLN02939 249 LIEVAETEERVFKLEKERSLLDASLRELEskfivaqEDVSKLSPLQYD-CWWEK----VENLQDLLdratnqvEKAALVL 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2718 QsKNDALQDTLEALQNSsrnlekeLELTKLEKMSfVEKVNTMTVK----ETELQK---EIHAVIQKTVALKEEFSGEKNR 2790
Cdd:PLN02939 324 D-QNQDLRDKVDKLEAS-------LKEANVSKFS-SYKVELLQQKlkllEERLQAsdhEIHSYIQLYQESIKEFQDTLSK 394
|
....
gi 528980992 2791 LMEE 2794
Cdd:PLN02939 395 LKEE 398
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
281-769 |
1.08e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.66 E-value: 1.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 281 DQLKAQNQELRSKMSELELRLQGQEKEMKGQVNKLQELQLQLEKAKVELNEKEKVLNKNRDELVRTTSQYDQASAKCTAl 360
Cdd:pfam15921 306 EQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLA- 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 361 eqKLKKLTEDLSCQRQ------NAESARCSLEQKIKEKEKEFQEELSRQQRSFQTLDQECTQMKARLTQELQQAKNTYNI 434
Cdd:pfam15921 385 --DLHKREKELSLEKEqnkrlwDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEK 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 435 LQAELDKVTSVKQQIEKKLEEF---KQNFSKTEQALQASQTKENELRRSSEEMKRENSLLKSQSEQRAREVCHLEEELKK 511
Cdd:pfam15921 463 VSSLTAQLESTKEMLRKVVEELtakKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDH 542
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 512 AKQCLSQSQNFAEEMKAKNTSQEtMLRDLQEKINQ--QENSLTLEKLKLALADLEKQRDCSQDLLK-------KREHHIE 582
Cdd:pfam15921 543 LRNVQTECEALKLQMAEKDKVIE-ILRQQIENMTQlvGQHGRTAGAMQVEKAQLEKEINDRRLELQefkilkdKKDAKIR 621
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 583 QLNEKLSKTERESEALLSALELKKKEYEELkeektlfsrwKSENEQLLNQMESEKESLQSKVNHLETCLKTQQIKSHEYN 662
Cdd:pfam15921 622 ELEARVSDLELEKVKLVNAGSERLRAVKDI----------KQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEME 691
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 663 ERVRTLEMERENLNVEIRNLQNVIDSktaeaetqkraygelqqkAEFSDQKHEKEIENMCLKISHLTGQVEDLEHKLQLL 742
Cdd:pfam15921 692 TTTNKLKMQLKSAQSELEQTRNTLKS------------------MEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFL 753
|
490 500
....*....|....*....|....*..
gi 528980992 743 SSEIMDKDQRYQDLHAESESLRDLLKS 769
Cdd:pfam15921 754 EEAMTNANKEKHFLKEEKNKLSQELST 780
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
2359-3053 |
1.24e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 51.38 E-value: 1.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2359 DLTKELQKEQSRVSELETLNSSFENLLREKEQEKVQMKEeskaavemLQTQLKELSEEVailcvdQETWKVEEQSLDSPL 2438
Cdd:pfam12128 231 QAIAGIMKIRPEFTKLQQEFNTLESAELRLSHLHFGYKS--------DETLIASRQEER------QETSAELNQLLRTLD 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2439 EEIQQLRNNI--------GKLKVC------LDADKKQQLHI-LEKLKESEHQADFLKDTVENLERELKLSGENQEHVTLE 2503
Cdd:pfam12128 297 DQWKEKRDELngelsaadAAVAKDrseleaLEDQHGAFLDAdIETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAK 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2504 AEKSKAEVetlkatVEEMDQNLRGLQLDLVNIRSDKEdltKELQKEQSRVSELET-LNSSFENLLREKEQEKVQMKEESK 2582
Cdd:pfam12128 377 YNRRRSKI------KEQNNRDIAGIKDKLAKIREARD---RQLAVAEDDLQALESeLREQLEAGKLEFNEEEYRLKSRLG 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2583 AAVEMLQKELEELNEKMAALGNDQETRKVKE--QSLSSQVDSLEHEKAQLLQDLDDAKSNYMILQSSVNDLIQEVEDGKQ 2660
Cdd:pfam12128 448 ELKLRLNQATATPELLLQLENFDERIERAREeqEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELEL 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2661 KLEKKDEE-ISILKSQTRDQEQLVSKLSQMEG------EQQLWKKQKADLENLM-VELE-QKIQV---------LQSKND 2722
Cdd:pfam12128 528 QLFPQAGTlLHFLRKEAPDWEQSIGKVISPELlhrtdlDPEVWDGSVGGELNLYgVKLDlKRIDVpewaaseeeLRERLD 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2723 ALQDTLEALQNSSRNLEKELELT--KLEKMSFVEKVNTMTVKETEL----------------QKEIHAVIQKTVALKEEF 2784
Cdd:pfam12128 608 KAEEALQSAREKQAAAEEQLVQAngELEKASREETFARTALKNARLdlrrlfdekqsekdkkNKALAERKDSANERLNSL 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2785 SGEKNRLMEELNLMLEEVKSSKGQLKELMLENSELKKSLDCVHKDRMEEQGKMRGEIAEYQLRLQEAENKHQALLLDTNK 2864
Cdd:pfam12128 688 EAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALETWYKRDLASLGVDP 767
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2865 QHEMEIQTYREKLTSKEECLSSQKVEI----DLLKSSKEELNNSLKATTEILEelkkTKMENLKhaDKLKKENDRAQSKI 2940
Cdd:pfam12128 768 DVIAKLKREIRTLERKIERIAVRRQEVlryfDWYQETWLQRRPRLATQLSNIE----RAISELQ--QQLARLIADTKLRR 841
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2941 KLLVKSCKQLEEEKVMLQKELSHLEAAQEKQrADTVVDANVDELITEM-------KELKETLEEKTKEADEYLDKYCSLL 3013
Cdd:pfam12128 842 AKLEMERKASEKQQVRLSENLRGLRCEMSKL-ATLKEDANSEQAQGSIgerlaqlEDLKLKRDYLSESVKKYVEHFKNVI 920
|
730 740 750 760
....*....|....*....|....*....|....*....|....*...
gi 528980992 3014 ISH------EKLEKAKEMLETQVAR--LSSQQSKLNLRRSPLVNSLAP 3053
Cdd:pfam12128 921 ADHsgsglaETWESLREEDHYQNDKgiRLLDYRKLVPYLEQWFDVRVP 968
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
282-1002 |
1.28e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.22 E-value: 1.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 282 QLKAQNQELRSKMSELELRLQGQEKEMKGQVNKLQELQLQLEKAKVELNEKEKVLNKNRDELVRTTSQYDQASAKCTALE 361
Cdd:TIGR02169 291 RVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLR 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 362 QKLKKLTEDLSCQRQNAESARCSLEQKIKEKEKefqeeLSRQQRSFQTLDQECTQMKARLTQELQQAKNTYNILQAELDK 441
Cdd:TIGR02169 371 AELEEVDKEFAETRDELKDYREKLEKLKREINE-----LKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKED 445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 442 VTSVKQQIEKKLEEFKQNFSKTEQALQASQTKENELRRSSEEMKRENSLLKSQ---SEQRAREVCHLEEELKKAKQ---- 514
Cdd:TIGR02169 446 KALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQaraSEERVRGGRAVEEVLKASIQgvhg 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 515 CLSQSQNFAE------EMKAKNTSQETMLRD---LQEKINqqenslTLEKLKLALAD---LEKQRDCSQDLLKKREHHIE 582
Cdd:TIGR02169 526 TVAQLGSVGEryataiEVAAGNRLNNVVVEDdavAKEAIE------LLKRRKAGRATflpLNKMRDERRDLSILSEDGVI 599
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 583 QLNEKLSKTERESEALLSALELKKKEYEELKEEKTLFSRWKS---ENEQLLNQMESEKESLQSKVNHLETclKTQQIKSH 659
Cdd:TIGR02169 600 GFAVDLVEFDPKYEPAFKYVFGDTLVVEDIEAARRLMGKYRMvtlEGELFEKSGAMTGGSRAPRGGILFS--RSEPAELQ 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 660 EYNERVRTLEMERENLNVEIRNLQNVIDSKTAEAETQKRAYGELQQKAEFSDQKHEK---EIENMCLKISHLTGQVEDLE 736
Cdd:TIGR02169 678 RLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKlkeRLEELEEDLSSLEQEIENVK 757
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 737 HKLQLLSSEImdkDQRYQDLHAESESLRDLLKSRDssamtiepHQRSRLAFEQQSALNNSFANIIGEQESVPSERSRCHV 816
Cdd:TIGR02169 758 SELKELEARI---EELEEDLHKLEEALNDLEARLS--------HSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTL 826
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 817 ATDQSPKSSSMLQNRVVSLEFSLESQKQMNSDLQKQCEELvqikGEIEENLMKAEQMHQSFVAETSQRISKLQEDTSVHQ 896
Cdd:TIGR02169 827 EKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEEL----EEELEELEAALRDLESRLGDLKKERDELEAQLRELE 902
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 897 NVVAETLAALESKERELQLLNEKLETEQAETGELKKNNHLLQESLKELQFLsETLSLEKKELNSIIS----LNKKDIEEL 972
Cdd:TIGR02169 903 RKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSL-EDVQAELQRVEEEIRalepVNMLAIQEY 981
|
730 740 750
....*....|....*....|....*....|...
gi 528980992 973 TQEN---GTLKEINATLTQEKMNLLQKTESFSN 1002
Cdd:TIGR02169 982 EEVLkrlDELKEKRAKLEEERKAILERIEEYEK 1014
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
277-565 |
1.49e-05 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 51.21 E-value: 1.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 277 SHLLDQLKAQNQELRSKMSELELRLQGQEKEMKgQVNKLQELQLQLE----KAKVELNEKEKVLNKNRDELVRTTSqyDQ 352
Cdd:PRK10929 136 SDSLSQLPQQQTEARRQLNEIERRLQTLGTPNT-PLAQAQLTALQAEsaalKALVDELELAQLSANNRQELARLRS--EL 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 353 ASAKCTALEQKLKKLTEDLSCQRQ-NAESArcsleqkikekekefqeeLSRQQRsfqtLDQECTQMKARLTQELQQAKNT 431
Cdd:PRK10929 213 AKKRSQQLDAYLQALRNQLNSQRQrEAERA------------------LESTEL----LAEQSGDLPKSIVAQFKINREL 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 432 YNIL--QA-ELDKVTSVKQQIEKKLEEFKQNFSK-TEQA--LQASQTKENELRRSSE---EMKRENSLLKSQSEQRAREV 502
Cdd:PRK10929 271 SQALnqQAqRMDLIASQQRQAASQTLQVRQALNTlREQSqwLGVSNALGEALRAQVArlpEMPKPQQLDTEMAQLRVQRL 350
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 528980992 503 cHLEEELKKAKQCLSQSQN----FAEEMKAKNTSQETMLRDLQEKINQQENSLTLE--KLKLALADLEK 565
Cdd:PRK10929 351 -RYEDLLNKQPQLRQIRQAdgqpLTAEQNRILDAQLRTQRELLNSLLSGGDTLILEltKLKVANSQLED 418
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
1772-2486 |
1.71e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 51.21 E-value: 1.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1772 ELKVKETSNENLRLLHGIEERDQKVENLLNEIKELDSKFHLLEVQLTTKIEacvaleKIVEELKKEkldLNEKLESFScH 1851
Cdd:TIGR01612 1004 DLKANLGKNKENMLYHQFDEKEKATNDIEQKIEDANKNIPNIEIAIHTSIY------NIIDEIEKE---IGKNIELLN-K 1073
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1852 NQREESSGGLTsNLEMVTSKFPHEGIED-----------DVAKVTDNWREKCLQVE---NELQRIQSEKDSMEHHALSAE 1917
Cdd:TIGR01612 1074 EILEEAEINIT-NFNEIKEKLKHYNFDDfgkeenikyadEINKIKDDIKNLDQKIDhhiKALEEIKKKSENYIDEIKAQI 1152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1918 ASLEAVQTEKLYLE--KDNENKQTVITCLEEGLSVVTSERDQLRGELDTLSKEN----------------------QELD 1973
Cdd:TIGR01612 1153 NDLEDVADKAISNDdpEEIEKKIENIVTKIDKKKNIYDEIKKLLNEIAEIEKDKtsleevkginlsygknlgklflEKID 1232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1974 QMSEKMKEKIRELESHQSECLHLQEWLQSLEKDSQALSLVRSELENQIEQLNKEKDSLVwESESLQTKLSESEHEKLAIT 2053
Cdd:TIGR01612 1233 EEKKKSEHMIKAMEAYIEDLDEIKEKSPEIENEMGIEMDIKAEMETFNISHDDDKDHHI-ISKKHDENISDIREKSLKII 1311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2054 KAL--EAALME-KGEVAVRLSSTQE---EVHQLRKGIEKLRVRIEADEKKQL--HVSEKLKESERRNDSLQDKVETLERE 2125
Cdd:TIGR01612 1312 EDFseESDINDiKKELQKNLLDAQKhnsDINLYLNEIANIYNILKLNKIKKIidEVKEYTKEIEENNKNIKDELDKSEKL 1391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2126 LQMAEENQELvildaENCKAEVETL--KTQIELMTERLKDLELDLVTIRSEKENLLKQLQEKQgqaselDTLLSSLKNLL 2203
Cdd:TIGR01612 1392 IKKIKDDINL-----EECKSKIESTldDKDIDECIKKIKELKNHILSEESNIDTYFKNADENN------ENVLLLFKNIE 1460
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2204 EEKEREKIQTKEEAKSAVEMLQTQLRELTEEIaalcDDQETWKVEEqslDSPAQEVQQLRNNIEKLK--VHLDIDKKKQL 2281
Cdd:TIGR01612 1461 MADNKSQHILKIKKDNATNDHDFNINELKEHI----DKSKGCKDEA---DKNAKAIEKNKELFEQYKkdVTELLNKYSAL 1533
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2282 QILEKLKESEHQADFLKDTVENLERELKLSGENQEHVTLEAEKSKAEVETLKATVEKMDQNLRGLQLDLVNIRSEKEDLT 2361
Cdd:TIGR01612 1534 AIKNKFAKTKKDSEIIIKEIKDAHKKFILEAEKSEQKIKEIKKEKFRIEDDAAKNDKSNKAAIDIQLSLENFENKFLKIS 1613
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2362 KELQKEQSRVSELETLNssfenllrekeqekvqmKEESKAAVEMLQTQLKELSEEVAILCVDQETWKVEEQSLDSPLEEI 2441
Cdd:TIGR01612 1614 DIKKKINDCLKETESIE-----------------KKISSFSIDSQDTELKENGDNLNSLQEFLESLKDQKKNIEDKKKEL 1676
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....
gi 528980992 2442 QQLRNNIGKLKVCLDADKKQ-QLHILEKLKES--------EHQADFLKDTVENL 2486
Cdd:TIGR01612 1677 DELDSEIEKIEIDVDQHKKNyEIGIIEKIKEIaiankeeiESIKELIEPTIENL 1730
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
448-1192 |
1.97e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 1.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 448 QIEKKLEEFKQNFSKTEQALQASQTKENELRR----SSEEMKRENSLLKSQSEQRAREVCHLEEELKKAKQCLSQSQNFA 523
Cdd:TIGR02169 181 EVEENIERLDLIIDEKRQQLERLRREREKAERyqalLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 524 EEMKAKNTSQETMLRDLQEKINQQENSLTLEkLKLALADLEKQRDCSQDLLKKREHHIEQLNEKLSKTERESEAllsale 603
Cdd:TIGR02169 261 SELEKRLEEIEQLLEELNKKIKDLGEEEQLR-VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDK------ 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 604 lkkkeyeeLKEEKTLFSRWKSENEQLLNQMESEKESLQSKVNHLETCLKTQQIKSHEYNERVRTLEMERENLNVEIRNLQ 683
Cdd:TIGR02169 334 --------LLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELK 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 684 NVIDSKTAEAETQKRAYGELQQKAEFSDQKH---EKEIENMCLKISHLTGQVEDLEHKLQLLSSEIMDKDQRYQDLHAES 760
Cdd:TIGR02169 406 RELDRLQEELQRLSEELADLNAAIAGIEAKInelEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKEL 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 761 ESLRDLLKSRDSSAMTIEPHQRSRLAfeQQSALNNSFANIIGEQESVPSERSRCHVATDQSpkSSSMLQNRVVSLE---- 836
Cdd:TIGR02169 486 SKLQRELAEAEAQARASEERVRGGRA--VEEVLKASIQGVHGTVAQLGSVGERYATAIEVA--AGNRLNNVVVEDDavak 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 837 ----------------FSLESQKQMNSDLQKQCEELVQikgEIEENLMKAEQMHQSFVA------------ETSQRISKL 888
Cdd:TIGR02169 562 eaiellkrrkagratfLPLNKMRDERRDLSILSEDGVI---GFAVDLVEFDPKYEPAFKyvfgdtlvvediEAARRLMGK 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 889 QEDTSVHQNVV----AETLAALESKEREL--QLLNEKLETEQAETGELKKNNHLLQESLKELQFLSETLSLEKKELNSII 962
Cdd:TIGR02169 639 YRMVTLEGELFeksgAMTGGSRAPRGGILfsRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKI 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 963 SLNKKDIEELTQENGTLKEInatLTQEKMNLLQKTESFSNCIDERDRSISELsnQYKQERLTLLQrcEETGNAFQDLS-E 1041
Cdd:TIGR02169 719 GEIEKEIEQLEQEEEKLKER---LEELEEDLSSLEQEIENVKSELKELEARI--EELEEDLHKLE--EALNDLEARLShS 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1042 KYKAVQEKNSKLECLLSECTGVCED---RKNELGQLKETFAREHQAFVSQLALAEER---NQNLIVELETVQQALQSEIT 1115
Cdd:TIGR02169 792 RIPEIQAELSKLEEEVSRIEARLREieqKLNRLTLEKEYLEKEIQELQEQRIDLKEQiksIEKEIENLNGKKEELEEELE 871
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1116 DIQNSSK---RETDGLKQEIMNLKEEQNKMQ---QEVSALLQENEHLMELMKTKHEHQCLELEPIQDSEKEEREINTCHL 1189
Cdd:TIGR02169 872 ELEAALRdleSRLGDLKKERDELEAQLRELErkiEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEEL 951
|
...
gi 528980992 1190 QLP 1192
Cdd:TIGR02169 952 SLE 954
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
2486-2811 |
1.99e-05 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 50.62 E-value: 1.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2486 LERELKLSGENQEHVTLEAEKSKAEVETLKATVEEMDQNLRGLQLDLVNIRSDKedLTKELQKEQSRVSELETLNSSFEN 2565
Cdd:PLN03229 413 VDPERKVNMKKREAVKTPVRELEGEVEKLKEQILKAKESSSKPSELALNEMIEK--LKKEIDLEYTEAVIAMGLQERLEN 490
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2566 LLREKEQEKVQMKEESKAAVEMLQKELEELNEKMAALGNdqetrkvkEQSLSSQVDSLE--HEKAQLLQDLDDAKSnymi 2643
Cdd:PLN03229 491 LREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPN--------YLSLKYKLDMLNefSRAKALSEKKSKAEK---- 558
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2644 LQSSVNDLIQEVEDG---KQKLEKKDEEISILKSQTRDQ--EQLVSKLSQMEGEQQLWKK---QKADLENLMVELEQKIQ 2715
Cdd:PLN03229 559 LKAEINKKFKEVMDRpeiKEKMEALKAEVASSGASSGDEldDDLKEKVEKMKKEIELELAgvlKSMGLEVIGVTKKNKDT 638
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2716 VLQSKNDALQDTLEALQN----------SSRNLEKELELTKLE-----KMSFVEKVNTMTVKETELQKEIHAVIQKTvAL 2780
Cdd:PLN03229 639 AEQTPPPNLQEKIESLNEeinkkierviRSSDLKSKIELLKLEvakasKTPDVTEKEKIEALEQQIKQKIAEALNSS-EL 717
|
330 340 350
....*....|....*....|....*....|.
gi 528980992 2781 KEEFsgekNRLMEELNLMLEEVKSSKGQLKE 2811
Cdd:PLN03229 718 KEKF----EELEAELAAARETAAESNGSLKN 744
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1266-2165 |
2.28e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.44 E-value: 2.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1266 EEKYISVLQELSTSQQDNAHLQCSLQTAMNKLNELEKMCEALQVEKSELISELNDSrsecitatskmAEEVGKLVNEVET 1345
Cdd:TIGR02168 238 REELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYAL-----------ANEISRLEQQKQI 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1346 LNDENALLQGELVEETPEGEFGEQQDEQTSVNLNplddsnfyehltmsskEVQMHFAELQEKFSSLQSEHKILHEQHCLM 1425
Cdd:TIGR02168 307 LRERLANLERQLEELEAQLEELESKLDELAEELA----------------ELEEKLEELKEELESLEAELEELEAELEEL 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1426 SSKMSELQSYVDTLKAENSVLSMSLRSSQGDLVkevppgpgeehllslsfscvtdspgkaslgessfykdLLEhttetSL 1505
Cdd:TIGR02168 371 ESRLEELEEQLETLRSKVAQLELQIASLNNEIE-------------------------------------RLE-----AR 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1506 LNNLEGTVSANQSNVEEVScSSLEEENLTEkeipsvplrsareletlCQTYLESLKQLEEEIESQGITKNKEIKELKELL 1585
Cdd:TIGR02168 409 LERLEDRRERLQQEIEELL-KKLEEAELKE-----------------LQAELEELEEELEELQEELERLEEALEELREEL 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1586 SSSREELDDLRKQylsenEQWQQKLTDVTAEMESKLAAEKRHAEHLTLElevaRLQLQGLDLSSRSLLGTDIE-----DA 1660
Cdd:TIGR02168 471 EEAEQALDAAERE-----LAQLQARLDSLERLQENLEGFSEGVKALLKN----QSGLSGILGVLSELISVDEGyeaaiEA 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1661 ILGGNdscdireSEEYISETKErtpkheihqicekDVQQDLSLeMEKITKTGATKLTEEWSREQSSESSHeTPVEDPAQG 1740
Cdd:TIGR02168 542 ALGGR-------LQAVVVENLN-------------AAKKAIAF-LKQNELGRVTFLPLDSIKGTEIQGND-REILKNIEG 599
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1741 CSGCISELSLSGPNASVPRDFLENQVTI-----QSLELKVKETSNENLRLL-------------------HGIEERDQKV 1796
Cdd:TIGR02168 600 FLGVAKDLVKFDPKLRKALSYLLGGVLVvddldNALELAKKLRPGYRIVTLdgdlvrpggvitggsaktnSSILERRREI 679
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1797 ENLLNEIKELDSKFHLLEVQLTTKIEACVALEKIVEELKKEKLDLNEKLesfschNQREESSGGLTSNLEMVTSKFPHEG 1876
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQI------SALRKDLARLEAEVEQLEERIAQLS 753
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1877 IEDDVAkvtdnwREKCLQVENELQRIQSEKDSMEHHALSAEASLEAVQTEKLYLEKDNENKQTVITCLEEGLSVVTSERD 1956
Cdd:TIGR02168 754 KELTEL------EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLE 827
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1957 QLRGELDTLSKENQELDQMSEKMKEKIRELESHQSEclhLQEWLQSLEKDSQALSLVRSELENQIEQLNKEKDSLVWESE 2036
Cdd:TIGR02168 828 SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEE---LEELIEELESELEALLNERASLEEALALLRSELEELSEELR 904
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2037 SLQTKLSESEHEKLAITKALEAALMEKGEVAVRLSSTQEEVHqlrkgiEKLRVRIEADEKKQLHVSEKLKESERRNDSLQ 2116
Cdd:TIGR02168 905 ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS------EEYSLTLEEAEALENKIEDDEEEARRRLKRLE 978
|
890 900 910 920
....*....|....*....|....*....|....*....|....*....
gi 528980992 2117 DKVETLERELQMAEEnqelvilDAENCKAEVETLKTQIELMTERLKDLE 2165
Cdd:TIGR02168 979 NKIKELGPVNLAAIE-------EYEELKERYDFLTAQKEDLTEAKETLE 1020
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1738-2379 |
2.83e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 50.05 E-value: 2.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1738 AQGCSGCISELSLSGPNASVPRDflENQVTIQSLELKVKETSNENLRLLHGIEERdQKVENLLNEIKELDSKFH--LLEV 1815
Cdd:TIGR00606 411 AQLCADLQSKERLKQEQADEIRD--EKKGLGRTIELKKEILEKKQEELKFVIKEL-QQLEGSSDRILELDQELRkaEREL 487
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1816 QLTTKIEACVALEKIVEELKKEKLDLNEKLESFSCHNQREESSGGLTSNLEMVTSK--FPHEGIEDDVAKVTDNWREKC- 1892
Cdd:TIGR00606 488 SKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDkmDKDEQIRKIKSRHSDELTSLLg 567
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1893 -----LQVENELQRIQSEKDSMEHHALSAEASLEAVQTEKLYLEKDNENKQTVITCLEEGLSVVTSERD------QLRGE 1961
Cdd:TIGR00606 568 yfpnkKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDeesdleRLKEE 647
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1962 LDTLSKENQELDQMSEKMKEKIRELESHQSECL-----------HLQEWLQSLEKDSQALSLVRSELENQIEQLNKEKDS 2030
Cdd:TIGR00606 648 IEKSSKQRAMLAGATAVYSQFITQLTDENQSCCpvcqrvfqteaELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDE 727
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2031 LVWESESLQTKLSESEHE---------KLAITKALEAALMEKGEVAVRLSSTQEEVHQLRKG----IEKLRVRIEADEKK 2097
Cdd:TIGR00606 728 MLGLAPGRQSIIDLKEKEipelrnklqKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTdvtiMERFQMELKDVERK 807
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2098 QLHVSEKLKESE------RRNDSLQDKVETLERELQMAEENQELV------ILDAENCKAEVETLKTQIELMTERLKDLE 2165
Cdd:TIGR00606 808 IAQQAAKLQGSDldrtvqQVNQEKQEKQHELDTVVSKIELNRKLIqdqqeqIQHLKSKTNELKSEKLQIGTNLQRRQQFE 887
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2166 LDLVTIRSEKENLLKQLQEKQGQASELDTLLSSLKNLLEEKEREKIQTKEEAKSAVEMLQTQLRELTEEIAALcddqetw 2245
Cdd:TIGR00606 888 EQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDI------- 960
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2246 kvEEQSLDSPAQEVQQLRNNIEKLKVHLDIDKKKQLQILEKLK-------ESEHQADFLKDTVENLERELKLSGENQEHV 2318
Cdd:TIGR00606 961 --ENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRlmrqdidTQKIQERWLQDNLTLRKRENELKEVEEELK 1038
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 528980992 2319 TLEAEKSKAEVETLKATVEKMDQNLRGLQLDLVNIRSEKEDLTKELQKEQSRVSELETLNS 2379
Cdd:TIGR00606 1039 QHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDA 1099
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1767-2561 |
3.21e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 50.05 E-value: 3.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1767 TIQSLELKVKETSNENLRLLHGIEERDQKVENLLNEIKEldskFHLLEVQltTKIEACVALEKIVEELKKEKLDLNEKLE 1846
Cdd:TIGR00606 270 EIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYH----NHQRTVR--EKERELVDCQRELEKLNKERRLLNQEKT 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1847 SFSCHNQR--------EESSGGLTSNLEMVTSKFPHEGIEDD--VAKVTDNWRE-KCLQVENELQRIQSEKDSMEHHALS 1915
Cdd:TIGR00606 344 ELLVEQGRlqlqadrhQEHIRARDSLIQSLATRLELDGFERGpfSERQIKNFHTlVIERQEDEAKTAAQLCADLQSKERL 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1916 AEASLEAVQTEKLYLEKDNENKQTVITCLEEGLSVVTSERDQLRGELDTLSKENQELdqmSEKMKEKIRELESHQSECLH 1995
Cdd:TIGR00606 424 KQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQEL---RKAERELSKAEKNSLTETLK 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1996 LQEwlQSLEKDSQALSLVRSELENQIEQLNKEKDSLVwESESLQTKLSESEHEKLAITKALEAALME-------KGEVAV 2068
Cdd:TIGR00606 501 KEV--KSLQNEKADLDRKLRKLDQEMEQLNHHTTTRT-QMEMLTKDKMDKDEQIRKIKSRHSDELTSllgyfpnKKQLED 577
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2069 RLSSTQEEVHQLRKGIEKLRVRIEADEKKQLHVSEKLKESERRNDSLQDKV------ETLERELQMAEENQELVILDAEN 2142
Cdd:TIGR00606 578 WLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLfdvcgsQDEESDLERLKEEIEKSSKQRAM 657
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2143 CKAEVETLKTQIELMTERLKDLELDLVTIRSEKENLLKQLQEKQGQASELDTLLSSLKNLLEEKEREKiqtkEEAKSAVE 2222
Cdd:TIGR00606 658 LAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRR----DEMLGLAP 733
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2223 MLQTQLRELTEEIAALCDDQETWKVEEQSLDSPAQEVQQLRNNI---EKLKVHLDIDKKKQLQILEKLKESEHQADFLKD 2299
Cdd:TIGR00606 734 GRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTImpeEESAKVCLTDVTIMERFQMELKDVERKIAQQAA 813
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2300 TVENLERELKLSGENQEHVTLEAEKSK--AEVETLKATVEKMDQNLRGLQLDLVNIRSEKEDLTKELQKEQSRVSELETL 2377
Cdd:TIGR00606 814 KLQGSDLDRTVQQVNQEKQEKQHELDTvvSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVEL 893
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2378 NSSFENLLREKEQEKVQMKEESKAAVEMLQTQL-----KELSEEVAILCVDQETWKV----------EEQSLDSPLEEIQ 2442
Cdd:TIGR00606 894 STEVQSLIREIKDAKEQDSPLETFLEKDQQEKEelissKETSNKKAQDKVNDIKEKVknihgymkdiENKIQDGKDDYLK 973
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2443 QLRNNIGKLKVCLDADKKQQLHILEKLK-------ESEHQADFLKDTVENLERELKLSGENQEHVTLEAEKSKAEVETLK 2515
Cdd:TIGR00606 974 QKETELNTVNAQLEECEKHQEKINEDMRlmrqdidTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMK 1053
|
810 820 830 840
....*....|....*....|....*....|....*....|....*.
gi 528980992 2516 ATVEEMDQNLRGLQLDLVNIRSDKEDLTKELQKEQSRVSELETLNS 2561
Cdd:TIGR00606 1054 QEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDA 1099
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2457-2676 |
3.23e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 3.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2457 ADKKQQLH-ILEKLKESEHQADFLKDTVENLERELKLSGENQEHVTLEAEKSKAEVETLKATVEEMDQNLRGLQLDLVNI 2535
Cdd:COG4942 23 AEAEAELEqLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2536 RSDKEDLTKELQKeQSRVSELETL--NSSFENLLREKEQEKvQMKEESKAAVEMLQKELEELNEKMAALGNDQETRKVKE 2613
Cdd:COG4942 103 KEELAELLRALYR-LGRQPPLALLlsPEDFLDAVRRLQYLK-YLAPARREQAEELRADLAELAALRAELEAERAELEALL 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 528980992 2614 QSLSSQVDSLEHEKAQLLQDLDDAKSNYMILQSSVNDLIQEVEDGKQKLEKKDEEISILKSQT 2676
Cdd:COG4942 181 AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
2464-2621 |
3.47e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 48.00 E-value: 3.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2464 HILEKLKESEHQADFLKDTVENLERELKLSGENQEHVTLEAEKSKAEVETLKATVEEMDQNLRGLQLDLVNIRSDKE--D 2541
Cdd:COG1579 14 ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEyeA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2542 LTKELQKEQSRVSELETLNSSFENLLREKEQEKVQMKEESKAAVEMLQKELEELNEKMAALGNDQETRKVKEQSLSSQVD 2621
Cdd:COG1579 94 LQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIP 173
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1781-2417 |
3.58e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.84 E-value: 3.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1781 ENLRLLHGIEERDQKVENLLNEIKELDSKfhLLEVQLTTK--IEACVALEKIVEELKKEKLDLNEKLESFSCHNQ--REE 1856
Cdd:pfam12128 228 RDIQAIAGIMKIRPEFTKLQQEFNTLESA--ELRLSHLHFgyKSDETLIASRQEERQETSAELNQLLRTLDDQWKekRDE 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1857 SSGGLTSNLEMVTSKFPH-EGIEDDVAKVTDNWREKCLQVENELQRIQSEKDSME--HHALSAEASLEAVQTEKLYLEKD 1933
Cdd:pfam12128 306 LNGELSAADAAVAKDRSElEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEerLKALTGKHQDVTAKYNRRRSKIK 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1934 NENKqTVITCLEEGLSVVTSERDQLRGEL-DTLSKENQELDQMSEKMKEKIRELESHQSECLhlqEWLQSLEKDSQALSL 2012
Cdd:pfam12128 386 EQNN-RDIAGIKDKLAKIREARDRQLAVAeDDLQALESELREQLEAGKLEFNEEEYRLKSRL---GELKLRLNQATATPE 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2013 VRSELENQIEQLNKEKDSLvwesESLQTKLSESEHEKLAITKALEAALMEKGEVAVRLSSTQEEVHQL------------ 2080
Cdd:pfam12128 462 LLLQLENFDERIERAREEQ----EAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELelqlfpqagtll 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2081 ----------RKGIEKLRVR---------------IEADEKKQLHVSEKLK-----ESERRNDSLQDKVETLERELQMAE 2130
Cdd:pfam12128 538 hflrkeapdwEQSIGKVISPellhrtdldpevwdgSVGGELNLYGVKLDLKridvpEWAASEEELRERLDKAEEALQSAR 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2131 ENQELVILDAENCKAEVETLKTQIELMTERLKDLELDLVTIRSEKENLLKQLQekQGQASELDTLLSSLKNLleekEREK 2210
Cdd:pfam12128 618 EKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKN--KALAERKDSANERLNSL----EAQL 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2211 IQTKEEAKSAVEMLQTQLRELTEEIaalcddQETWKVEEQSLDSP-AQEVQQLRNNIEKLKVHLDIDKKKQLQILEKLKE 2289
Cdd:pfam12128 692 KQLDKKHQAWLEEQKEQKREARTEK------QAYWQVVEGALDAQlALLKAAIAARRSGAKAELKALETWYKRDLASLGV 765
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2290 SEHQADFLKDTVENLERELKLSGENQEHVT-----------LEAEKSKAEVETLKATVEKMDQNLRGLQLDLVNIRSEKE 2358
Cdd:pfam12128 766 DPDVIAKLKREIRTLERKIERIAVRRQEVLryfdwyqetwlQRRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLE 845
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 528980992 2359 DLTKELQKEQSRVSE-LETLNSSFENLLREKEQEKVQMKE----ESKAAVEMLQTQLKELSEEV 2417
Cdd:pfam12128 846 MERKASEKQQVRLSEnLRGLRCEMSKLATLKEDANSEQAQgsigERLAQLEDLKLKRDYLSESV 909
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
2038-2191 |
3.67e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 48.00 E-value: 3.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2038 LQTKLSESEHEKLAITKALEAALMEKGEVAVRLSSTQEEVHQLRKGIEKLRVRIEADEKKQLHVSEKLKE--SERRNDSL 2115
Cdd:COG1579 15 LDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNvrNNKEYEAL 94
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 528980992 2116 QDKVETLERELQMAEENQELVILDAENCKAEVETLKTQIELMTERLKDLELDLVTIRSEKENLLKQLQEKQGQASE 2191
Cdd:COG1579 95 QKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAA 170
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1977-3002 |
3.72e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 49.79 E-value: 3.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1977 EKMKEKIRELESHQSECLHLQEWLQSLEKDSQALSLVRSELEnqiEQLNKEKDsLVWESESLQTKLSESEHEKLAITKAL 2056
Cdd:pfam01576 5 EEMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQ---EQLQAETE-LCAEAEEMRARLAARKQELEEILHEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2057 EAALMEKGEVAVRLSSTQEEVHQLRKGIEKLRVRIEADEKK----QLHVSEKLKESERRNDSLQDKVETLERELQMAEE- 2131
Cdd:pfam01576 81 ESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKlqleKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEEr 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2132 --NQELVILDAENCKAEVETLKTQIELMT----ERLKDLELDLVTIRSEKENLLKQLQEKQGQASELDTLLSSLKNLLEE 2205
Cdd:pfam01576 161 isEFTSNLAEEEEKAKSLSKLKNKHEAMIsdleERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2206 KEREKIQTK---EEAKSAVEMLQTQLRELTEEIAALCDDQETwkvEEQSLDSPAQEVQQLRNNIEKLKVHLD--IDKKKQ 2280
Cdd:pfam01576 241 KEEELQAALarlEEETAQKNNALKKIRELEAQISELQEDLES---ERAARNKAEKQRRDLGEELEALKTELEdtLDTTAA 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2281 LQILEKLKESEhqadflkdtVENLERELKLSGENQEHVTLE-AEKSKAEVETLKATVEKMDQNLRGLQLDLVNIRSEKED 2359
Cdd:pfam01576 318 QQELRSKREQE---------VTELKKALEEETRSHEAQLQEmRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAE 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2360 LTKELQKEQSRVSELETLNSSFENLLRE---KEQEKVQMKEESKAAVEMLQTQLKELSEEVAILCVDQETWKVEEQSLDS 2436
Cdd:pfam01576 389 LQAELRTLQQAKQDSEHKRKKLEGQLQElqaRLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLES 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2437 PLEEIQQLRNNIGKLKVCLDADKKQ----QLHILEKLKESEHQADFLKDTVENLERELKLSGENQEHVTLEAE------- 2505
Cdd:pfam01576 469 QLQDTQELLQEETRQKLNLSTRLRQledeRNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEaleegkk 548
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2506 KSKAEVETLKATVEEMDQNLRGLQLDLVNIRSDKEDLTKELQKEQSRVSELETLNSSFENLLREKEQEKVQMKEESKAAv 2585
Cdd:pfam01576 549 RLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRA- 627
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2586 emlQKELEELNEKMAALGNDQETRKVKEQSLSSQVDSLEHEKAQLLQDLDDAKSNYMILQSSVNDLIQEVEDGKQKLEKK 2665
Cdd:pfam01576 628 ---EAEAREKETRALSLARALEEALEAKEELERTNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEEL 704
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2666 DEEISILKS--------------------QTRDQE------QLVSKLSQMEGEQQLWKKQKA-------DLENLMVELEQ 2712
Cdd:pfam01576 705 EDELQATEDaklrlevnmqalkaqferdlQARDEQgeekrrQLVKQVRELEAELEDERKQRAqavaakkKLELDLKELEA 784
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2713 KIQVLQSKNDALQDTLEALQNSSRNLEKELELTKLEKMSFVekvntMTVKETElqKEIHAVIQKTVALKEEFSGE---KN 2789
Cdd:pfam01576 785 QIDAANKGREEAVKQLKKLQAQMKDLQRELEEARASRDEIL-----AQSKESE--KKLKNLEAELLQLQEDLAASeraRR 857
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2790 RLMEELNLMLEEVKSSKGQLKELMLENSELKKSLDCVHKDRMEEQGKMrgeiaeyqlrlqEAENKHQALLLDTNKQHEME 2869
Cdd:pfam01576 858 QAQQERDELADEIASGASGKSALQDEKRRLEARIAQLEEELEEEQSNT------------ELLNDRLRKSTLQVEQLTTE 925
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2870 IQTYREKLTSKEECLSSQKVEIDLLKSSKEELNNSLKATTEILEELKKTKMENLKhaDKLKKENDRAQSKIKLLVKSCKQ 2949
Cdd:pfam01576 926 LAAERSTSQKSESARQQLERQNKELKAKLQEMEGTVKSKFKSSIAALEAKIAQLE--EQLEQESRERQAANKLVRRTEKK 1003
|
1050 1060 1070 1080 1090
....*....|....*....|....*....|....*....|....*....|...
gi 528980992 2950 LEEekVMLQKELSHLEAAQEKQRADtvvdanvdELITEMKELKETLEEKTKEA 3002
Cdd:pfam01576 1004 LKE--VLLQVEDERRHADQYKDQAE--------KGNSRMKQLKRQLEEAEEEA 1046
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
1973-2257 |
4.25e-05 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 49.52 E-value: 4.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1973 DQMSEKMKEKiRELESHQSEclHLQEWLQSLEKDSQALSLVRSELENQIEQLNKEKDSLVWESESLQTKLSES-EHEKLA 2051
Cdd:PLN02939 113 NEQQTNSKDG-EQLSDFQLE--DLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSETdARIKLA 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2052 ITKALEAALMEKgevavrlsstqeevhQLRKGIEKLRVRIEADEKKQLHVSEKLKESERRNDSLQDKVETLEREL-QMAE 2130
Cdd:PLN02939 190 AQEKIHVEILEE---------------QLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELiEVAE 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2131 ENQELVILDAENC--KAEVETLKT---------------QIELMTERLKDLELDLVTIRSEKENLLKQLQEKQGQASELD 2193
Cdd:PLN02939 255 TEERVFKLEKERSllDASLRELESkfivaqedvsklsplQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVD 334
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2194 TLLSSLK------------NLLEEKER---EKIQ-TKEEAKSAVEMLQTQLRELTEEIAALCDDQETWKVEEQSLDSPAQ 2257
Cdd:PLN02939 335 KLEASLKeanvskfssykvELLQQKLKlleERLQaSDHEIHSYIQLYQESIKEFQDTLSKLKEESKKRSLEHPADDMPSE 414
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
828-1115 |
4.87e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 4.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 828 LQNRVVSLEFSLESQKQMNSDLQKQCEELVQIKGEIEENLmkaeQMHQSFVAETSQRISKLQEDTSVHQNVVAETLAALE 907
Cdd:COG1196 244 LEAELEELEAELEELEAELAELEAELEELRLELEELELEL----EEAQAEEYELLAELARLEQDIARLEERRRELEERLE 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 908 SKERELQLLNEKLETEQAETGELKKNNHLLQESLKELQflsETLSLEKKELNSIISLNKKDIEELTQENGTLKEINATLT 987
Cdd:COG1196 320 ELEEELAELEEELEELEEELEELEEELEEAEEELEEAE---AELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAA 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 988 QEKMNLLQKTESFSNCIDERDRSISELSnQYKQERLTLLQRCEETGNAFQDLSEKYKAVQEKNSKLECLLSECTGVCEDR 1067
Cdd:COG1196 397 ELAAQLEELEEAEEALLERLERLEEELE-ELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALL 475
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 528980992 1068 KNELGQLKETFAREHQAFVSQLALAEERNQNLIVELETVQQALQSEIT 1115
Cdd:COG1196 476 EAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLA 523
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
2424-2736 |
5.29e-05 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 49.13 E-value: 5.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2424 QETWKVEEQSLDSPLEEIQQLRNNIGKLKVCLDADKKQQLHILEKLKeseHQADFLKDTVENLEreLKLSgENQEHVTLE 2503
Cdd:PLN02939 116 QTNSKDGEQLSDFQLEDLVGMIQNAEKNILLLNQARLQALEDLEKIL---TEKEALQGKINILE--MRLS-ETDARIKLA 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2504 AEKsKAEVETLKATVEEMDQNLrglQLDLVNIRSDKEDLTKELqkeqsrvSELETLNSSFENLLREKEQEKVQMKEESKA 2583
Cdd:PLN02939 190 AQE-KIHVEILEEQLEKLRNEL---LIRGATEGLCVHSLSKEL-------DVLKEENMLLKDDIQFLKAELIEVAETEER 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2584 AVeMLQKELEELNEKMAALgndqETRKVKEQSLSSQVDSLEH----EKAQLLQDLDDAKSNYMILQSSVNDLIQEVEDGK 2659
Cdd:PLN02939 259 VF-KLEKERSLLDASLREL----ESKFIVAQEDVSKLSPLQYdcwwEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKV 333
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 528980992 2660 QKLEKKDEEISilksqtrdqeqlVSKLS--QMEGEQQLWKKQKADLENLMVELEQKIQVLQSKNDALQDTLEALQNSSR 2736
Cdd:PLN02939 334 DKLEASLKEAN------------VSKFSsyKVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESK 400
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2050-2238 |
6.19e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 6.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2050 LAITKALEAALMEKGEVAVRLSSTQEEVHQLRKGIEKLRVRIEADEKKQLHVSEKLKESERRNDSLQDKVETLERELQMA 2129
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2130 EENQE----------------------LVILDAENC----------KAEVETLKTQIELMTERLKDLELDLVTIRSEKEN 2177
Cdd:COG4942 96 RAELEaqkeelaellralyrlgrqpplALLLSPEDFldavrrlqylKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 528980992 2178 LLKQLQEKQGQASELDTLLSSLKNLLEEKEREKIQTKEEAKSavemLQTQLRELTEEIAAL 2238
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAE----LQQEAEELEALIARL 232
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2626-2852 |
7.97e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 7.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2626 EKAQLLQDLDDAKSNYMILqssvNDLIQEVEDGKQKLE------KKDEEISILKSQTRDQEQLVSKLS--QMEGEQQLWK 2697
Cdd:COG4913 219 EEPDTFEAADALVEHFDDL----ERAHEALEDAREQIEllepirELAERYAAARERLAELEYLRAALRlwFAQRRLELLE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2698 KQKADLENLMVELEQKIQVLQSKNDALQ---------------DTLEALQNSSRNLEKELELTKLEKMSFVEKVNTMTVK 2762
Cdd:COG4913 295 AELEELRAELARLEAELERLEARLDALReeldeleaqirgnggDRLEQLEREIERLERELEERERRRARLEALLAALGLP 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2763 ETELQKEIHAVIQKTVALKEEFSGEKNRLMEELNLMLEEVKSSKGQLKELMLENSELKKSLDCVHkdrmEEQGKMRGEIA 2842
Cdd:COG4913 375 LPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIP----ARLLALRDALA 450
|
250
....*....|
gi 528980992 2843 EyQLRLQEAE 2852
Cdd:COG4913 451 E-ALGLDEAE 459
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1763-2131 |
1.01e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.11 E-value: 1.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1763 ENQVTIQSLELKVKETSNENLRLLHGIEERDQKVENLLNEIKELDSKFHLLEVQLTTKIEACVALEKIVEELKKEKLDLN 1842
Cdd:PRK02224 325 ELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAP 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1843 EKLESFSCHNQ-REESSGGLTSNLEMVTSKFphEGIEDDVAK------------------------VTDNWREKCLQVEN 1897
Cdd:PRK02224 405 VDLGNAEDFLEeLREERDELREREAELEATL--RTARERVEEaealleagkcpecgqpvegsphveTIEEDRERVEELEA 482
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1898 ELQRIQSEKDSMEHHALSAEaslEAVQTEKlYLEKDNENKQTVITCLEEGLSVVTSERDQlrgeLDTLSKENQELDQMSE 1977
Cdd:PRK02224 483 ELEDLEEEVEEVEERLERAE---DLVEAED-RIERLEERREDLEELIAERRETIEEKRER----AEELRERAAELEAEAE 554
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1978 KMKEKIRELESHQSECLhlqEWLQSLEKDsqalslvRSELENQIEQLNKEKDSLVwESESLQTKLsESEHEKLAITKALE 2057
Cdd:PRK02224 555 EKREAAAEAEEEAEEAR---EEVAELNSK-------LAELKERIESLERIRTLLA-AIADAEDEI-ERLREKREALAELN 622
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 528980992 2058 AALMEK-GEVAVRLSSTQEEVHQLRkgIEKLRVRIEADEKKQLHVSEKLKESERRNDSLQDKVETLERELQMAEE 2131
Cdd:PRK02224 623 DERRERlAEKRERKRELEAEFDEAR--IEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEE 695
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
903-1185 |
1.04e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.39 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 903 LAALESKERELQLLNEKLETEQAETGELKKNNHLLQESLKELQFLSETLSLEKKELNSIISLNKKDIEELTQEngtLKEI 982
Cdd:COG1196 231 LLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQD---IARL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 983 NATLTQEKMNLLQktesfsncIDERDRSISELSNQYKQERLTLLQRCEETGNAFQDLSEKYKAVQEKNSKLECLLSEctg 1062
Cdd:COG1196 308 EERRRELEERLEE--------LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE--- 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1063 vCEDRKNELGQLKETFAREHQAFVSQLALAEERNQNLIVELETVQQALQSEITDIQNSSKRETDGLKQEIMNLKEEQNKM 1142
Cdd:COG1196 377 -AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE 455
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 528980992 1143 QQEVSALLQENEHLMELMKTKHEHQCLELEPIQDSEKEEREIN 1185
Cdd:COG1196 456 EEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE 498
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2799-3052 |
1.05e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.14 E-value: 1.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2799 LEEVKSSKGQLKELMLENSELKKSLDCVHKDRMEEQgkmrgEIAEYQLRLQEAEnkhQALLLDTNKQHEMEIQTYREKLT 2878
Cdd:TIGR02169 176 LEELEEVEENIERLDLIIDEKRQQLERLRREREKAE-----RYQALLKEKREYE---GYELLKEKEALERQKEAIERQLA 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2879 SKEECLSSQKVEIDLLKSSKEELNNSLKATTEILEELKKTKMENLKHA-DKLKKENDRAQSKIKLLVKSCKQLEEEKVML 2957
Cdd:TIGR02169 248 SLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKiGELEAEIASLERSIAEKERELEDAEERLAKL 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2958 QKELSHLEAA--------QEKQRADTVVDANVDELITEMKELKETLEEKTKEADEYLDKYCSLLISHEKLEKAKEMLETQ 3029
Cdd:TIGR02169 328 EAEIDKLLAEieelereiEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRE 407
|
250 260
....*....|....*....|...
gi 528980992 3030 VARLSSQQSKLNLRRSPLVNSLA 3052
Cdd:TIGR02169 408 LDRLQEELQRLSEELADLNAAIA 430
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
623-1411 |
1.07e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.13 E-value: 1.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 623 KSENEQLLNQMESEKESLQSKVNHLETCLKTQQIKSHEYNERVRTLEMERENLNVEIRNLQN---VIDSKTAEAETQKRA 699
Cdd:TIGR02168 241 LEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQqkqILRERLANLERQLEE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 700 YGELQQKAEFSDQKHEKEIENMCLKISHLTGQVEDLEHKLQLLSSEIMDKDQRYQDLHAESESLRDllksrdssamtiep 779
Cdd:TIGR02168 321 LEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS-------------- 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 780 hqRSRLAFEQQSALNNSFANIIGEQESvpSERSRCHVATDQSPKSSSMLQNRVVSLEFSLESQKQMNSDLQKQCEELVQI 859
Cdd:TIGR02168 387 --KVAQLELQIASLNNEIERLEARLER--LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEA 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 860 KGEIEENLMKAEQMHQSFVAETSQRISKL------QEDTSVHQNVVAETLAALESKERELQLLNEKLETEQAETGELKKn 933
Cdd:TIGR02168 463 LEELREELEEAEQALDAAERELAQLQARLdslerlQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEA- 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 934 nhLLQESLKELqfLSETLSLEKKELNSI--ISLNKKDIEELTQENGTLKEINatltqeKMNLLQKTESFSNCIDERDRSI 1011
Cdd:TIGR02168 542 --ALGGRLQAV--VVENLNAAKKAIAFLkqNELGRVTFLPLDSIKGTEIQGN------DREILKNIEGFLGVAKDLVKFD 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1012 SELSNQYkQERLTLLQRCEETGNAFQDLSEKYKAVQEKNSKLECLLSECTGVCEDRKNELGQLKETFAREHqaFVSQLAL 1091
Cdd:TIGR02168 612 PKLRKAL-SYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEE--LEEKIEE 688
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1092 AEERNQNLIVELETVQQALQsEITDIQNSSKRETDGLKQEIMNLKEEQNKMQQEVSALLQENEHLmelmktkhEHQCLEL 1171
Cdd:TIGR02168 689 LEEKIAELEKALAELRKELE-ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQL--------SKELTEL 759
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1172 EPIQDSEKEEREINTCHLQlpmdldvkdtspdTCNAQLVQVESKVRNMELKLQKSEKE-ECLQYELQTRELETEDLQQDP 1250
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELA-------------EAEAEIEELEAQIEQLKEELKALREAlDELRAELTLLNEEAANLRERL 826
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1251 QSQDisglgdSEIDPEEKYISVLQE----LSTSQQDNAHLQCSLQTAmnkLNELEKMCEALQVEKSELISELNDSRSECI 1326
Cdd:TIGR02168 827 ESLE------RRIAATERRLEDLEEqieeLSEDIESLAAEIEELEEL---IEELESELEALLNERASLEEALALLRSELE 897
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1327 TATSKMAE---EVGKLVNEVETLNDENAllQGELVEETPEGEFGEQQDEQTS-VNLNPLDDSNFYEHLTMSSKEVQMHFA 1402
Cdd:TIGR02168 898 ELSEELRElesKRSELRRELEELREKLA--QLELRLEGLEVRIDNLQERLSEeYSLTLEEAEALENKIEDDEEEARRRLK 975
|
....*....
gi 528980992 1403 ELQEKFSSL 1411
Cdd:TIGR02168 976 RLENKIKEL 984
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
2051-2489 |
1.09e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.84 E-value: 1.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2051 AITKALEAALMEKGEVAVRLSSTQEEVHQLRKGIEKLRVRIEADEKKQLHVSEKLKESERRNDSLQDKVETLERELQMAE 2130
Cdd:COG4717 50 RLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLP 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2131 ENQELvildaENCKAEVETLKTQIELMTERLKDLEldlvTIRSEKENLLKQLQEKQGQaseLDTLLSSLKNLLEEKEREK 2210
Cdd:COG4717 130 LYQEL-----EALEAELAELPERLEELEERLEELR----ELEEELEELEAELAELQEE---LEELLEQLSLATEEELQDL 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2211 IQTKEEAKSAVEMLQTQLRELTEEIAALCDDQETWKVEEQSLDsPAQEVQQLRN-------------------------- 2264
Cdd:COG4717 198 AEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAA-LEERLKEARLllliaaallallglggsllsliltia 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2265 --------NIEKLKVHLDIDKKKQLQILEKLKESEHQADFLKDTVENLERELKLSGENQEHVTLEAEKSKAEVETLKATV 2336
Cdd:COG4717 277 gvlflvlgLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREA 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2337 EKMDQnlrglQLDLVNIRSEKEDLTKELQkeqsrVSELETLNSSFENLlrekeQEKVQMKEESKAAVEMLQTQLKELSEE 2416
Cdd:COG4717 357 EELEE-----ELQLEELEQEIAALLAEAG-----VEDEEELRAALEQA-----EEYQELKEELEELEEQLEELLGELEEL 421
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 528980992 2417 VAILcvDQETWKVEEQSLDSPLEEIQQLRNNIGKLKvcldADKKQQLHILEK---LKESEHQADFLKDTVENLERE 2489
Cdd:COG4717 422 LEAL--DEEELEEELEELEEELEELEEELEELREEL----AELEAELEQLEEdgeLAELLQELEELKAELRELAEE 491
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
15-195 |
1.13e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.01 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 15 RALQKIQELEGQLDKLKKERQQRQFQLETLEAALQKQKQKVENEKTEGANLKRENQSLMEICENLEKTKQKISHELQVKE 94
Cdd:COG1196 292 ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 95 SQVNFQEGQLNSSKKQIEKLEQELKRCKSELERSQQAAQSADVSLNSCLTPQKIFATPLTPSQyysgSKYEDLKEKYNKE 174
Cdd:COG1196 372 AELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELE----EEEEEEEEALEEA 447
|
170 180
....*....|....*....|.
gi 528980992 175 VEERKRLEAEVKALQAKKASQ 195
Cdd:COG1196 448 AEEEAELEEEEEALLELLAEL 468
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
2569-3024 |
1.13e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.84 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2569 EKEQEKVQMKEESKAAVEMLQKELEELNEKMAALGNDQETRKVKEQSLSSQVDSLEhekaqLLQDLDDAKSNYMILQSSV 2648
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLP-----LYQELEALEAELAELPERL 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2649 NDL---IQEVEDGKQKLEKKDEEISILKSQTRDQEQLVSKlsQMEGEQQLWKKQKADLENLMVELEQKIQVLQSKNDALQ 2725
Cdd:COG4717 149 EELeerLEELRELEEELEELEAELAELQEELEELLEQLSL--ATEEELQDLAEELEELQQRLAELEEELEEAQEELEELE 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2726 DTLEALQNSSRNLEKELELTKLEKMSFVE----KVNTMTVKETELQKEIHAVIQKTVALKEEFSGEKNRLMEELNLMLEE 2801
Cdd:COG4717 227 EELEQLENELEAAALEERLKEARLLLLIAaallALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEE 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2802 VKSSKGQLKELMLENSELKKSLDCVHKDRMEEQGKMRGEIAEYQLRLQEAENKHQALLLDtnkQHEMEIQTYREKLTSKE 2881
Cdd:COG4717 307 LQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLE---ELEQEIAALLAEAGVED 383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2882 ECLSSQKVEIdllKSSKEELNNSLKATTEILEELKKTKMENLKHADKlkkenDRAQSKIKLLVKSCKQLEEEKVMLQKEL 2961
Cdd:COG4717 384 EEELRAALEQ---AEEYQELKEELEELEEQLEELLGELEELLEALDE-----EELEEELEELEEELEELEEELEELREEL 455
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 528980992 2962 SHLEAAQEKQRADTVVDanvdelitemkELKETLEEKTKEADEYLDKYCSLLISHEKLEKAKE 3024
Cdd:COG4717 456 AELEAELEQLEEDGELA-----------ELLQELEELKAELRELAEEWAALKLALELLEEARE 507
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2653-2858 |
1.17e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2653 QEVEDGKQKLEKKDEEIsilksqtrdqEQLVSKLSQMEGEQQLWKKQKADLENLMVELEQKIQVLQSKNDALQDTLEALQ 2732
Cdd:COG4942 20 DAAAEAEAELEQLQQEI----------AELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2733 NSSRNLEKELE---------LTKLEKMSFVEKVNTMTVKETELQKEIHAVIQKTV--ALKEEFSGEKNRLmEELNLMLEE 2801
Cdd:COG4942 90 KEIAELRAELEaqkeelaelLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLapARREQAEELRADL-AELAALRAE 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 528980992 2802 VKSSKGQLKELMLENSELKKSLDCVHKDRMEEQGKMRGEIAEYQLRLQEAENKHQAL 2858
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEEL 225
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
281-514 |
1.33e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.70 E-value: 1.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 281 DQLKAQNQELRSkmselelrlqgqekemkgqvnKLQELQLQLEKAKVELNEKEKVLN--KNRDELVRTTSQYDQASAKCT 358
Cdd:COG3206 164 QNLELRREEARK---------------------ALEFLEEQLPELRKELEEAEAALEefRQKNGLVDLSEEAKLLLQQLS 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 359 ALEQKLKKLTEdlscQRQNAESARCSLEQKIKEKEKEFQEELsrQQRSFQTLDQECTQMKARLTQELQQAKNTYNILQAE 438
Cdd:COG3206 223 ELESQLAEARA----ELAEAEARLAALRAQLGSGPDALPELL--QSPVIQQLRAQLAELEAELAELSARYTPNHPDVIAL 296
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 528980992 439 LDKVTSVKQQIEkklEEFKQNFSKTEQALQASQTKENELRRSSEEMKRENSLLkSQSEQRAREvchLEEELKKAKQ 514
Cdd:COG3206 297 RAQIAALRAQLQ---QEAQRILASLEAELEALQAREASLQAQLAQLEARLAEL-PELEAELRR---LEREVEVARE 365
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
2313-2613 |
1.37e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 47.97 E-value: 1.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2313 ENQEHVTLEAEKSKAEVETLKATVEKMDQN--------LRGLQlDLVNIRSEKEDLTKELQKEQSRVSELEtlnssfenl 2384
Cdd:PLN02939 114 EQQTNSKDGEQLSDFQLEDLVGMIQNAEKNilllnqarLQALE-DLEKILTEKEALQGKINILEMRLSETD--------- 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2385 lrekeqEKVQMKEESKAAVEMLQTQLKELSEEVAILCVDQETWKVE-EQSLDSPLEEIQQLRNNIGKLKVCLD--ADKKQ 2461
Cdd:PLN02939 184 ------ARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSlSKELDVLKEENMLLKDDIQFLKAELIevAETEE 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2462 QLHILEKlkesehQADFLKDTVENLERELKLSGEN-QEHVTLEAEKSKAEVETLKATVEEMDQNLRGLQLDLvnirSDKE 2540
Cdd:PLN02939 258 RVFKLEK------ERSLLDASLRELESKFIVAQEDvSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVL----DQNQ 327
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 528980992 2541 DLTKELQKEQSRVSELET--LNSSFENLLREK----EQEKVQMKEESKAAVEMLQKELEELNEKMAALGNDQETRKVKE 2613
Cdd:PLN02939 328 DLRDKVDKLEASLKEANVskFSSYKVELLQQKlkllEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKKRSLEH 406
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
2098-2349 |
1.42e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.70 E-value: 1.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2098 QLHVSEKLKESERRNDSLQDKVETLERELQMAEenQELVILDAENckaEVETLKTQIELMTERLKDLELDLVTIRSEKEN 2177
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEEAE--AALEEFRQKN---GLVDLSEEAKLLLQQLSELESQLAEARAELAE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2178 LLKQLQEKQGQASELDTLLSSLKNlleekerekiqtkeeaKSAVEMLQTQLRELTEEIAALcddqetwkveEQSLDSPAQ 2257
Cdd:COG3206 238 AEARLAALRAQLGSGPDALPELLQ----------------SPVIQQLRAQLAELEAELAEL----------SARYTPNHP 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2258 EVQQLRNNIEKLKVHLDIDKKKQLQILE-KLKESEHQADFLKDTVENLERELK-LSGENQEHVTLEaekskAEVETLKAT 2335
Cdd:COG3206 292 DVIALRAQIAALRAQLQQEAQRILASLEaELEALQAREASLQAQLAQLEARLAeLPELEAELRRLE-----REVEVAREL 366
|
250
....*....|....
gi 528980992 2336 VEKMDQNLRGLQLD 2349
Cdd:COG3206 367 YESLLQRLEEARLA 380
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
278-452 |
1.43e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 1.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 278 HLLDQLKAQNQELRSKMSELE--------LRLQGQEKEMKGQVNKLQELQLQLEKAKVELNEKEKVLNKNRDELVRTTSQ 349
Cdd:COG4913 252 ELLEPIRELAERYAAARERLAeleylraaLRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQ 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 350 YDQAS-AKCTALEQKLKKLTEDLSCQRQNAESARcSLEQKIKEKEKEFQEELSRQQRSFQTLDQECTQMKARLTQELQQA 428
Cdd:COG4913 332 IRGNGgDRLEQLEREIERLERELEERERRRARLE-ALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEA 410
|
170 180
....*....|....*....|....
gi 528980992 429 KNTYNILQAELDKVTSVKQQIEKK 452
Cdd:COG4913 411 EAALRDLRRELRELEAEIASLERR 434
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
2609-3040 |
1.55e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 47.73 E-value: 1.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2609 RKVKEQSLSSQVDSLEHEKAQLLQDLDDAKSNymilqssvndliqEVEDGKQKLEKKDEEISILKSQTRDQEQLVSKLSQ 2688
Cdd:TIGR00606 200 QKVQEHQMELKYLKQYKEKACEIRDQITSKEA-------------QLESSREIVKSYENELDPLKNRLKEIEHNLSKIMK 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2689 MEGEQQLWKKQKADLENLMVELEQK-IQVLQSKNDALQDTLEALQNSSRNLEKELELTKLEKMSFVEKVNTMTVKETELQ 2767
Cdd:TIGR00606 267 LDNEIKALKSRKKQMEKDNSELELKmEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2768 KEIhAVIQKTVALKEEFSGEKNRLMEELNLMLEEVKSSKGQLKELMLENSELKKsldcvhKDRMEEQGKMRGEIAEYQLR 2847
Cdd:TIGR00606 347 VEQ-GRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFHTLV------IERQEDEAKTAAQLCADLQS 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2848 LQEAENKHQALLLDTNKQHEMEIQTYREKLTSKEECLSSQKVEIDLLKSSKEELNNSLKATTEILEELKKTKmENLKHAD 2927
Cdd:TIGR00606 420 KERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAE-KNSLTET 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2928 KLKKENDRAQSKIKLLVKSCKQLEE-------EKVMLQKELSHLEAAQEKQRADTVVDANVDELITEM------KELKET 2994
Cdd:TIGR00606 499 LKKEVKSLQNEKADLDRKLRKLDQEmeqlnhhTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLgyfpnkKQLEDW 578
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 528980992 2995 LEEKTKEADEYLDKYCSLLISHEKLEKAKEMLETQVARLSSQQSKL 3040
Cdd:TIGR00606 579 LHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSY 624
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1958-2704 |
1.64e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 47.66 E-value: 1.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1958 LRGELDTLSKENQELDQMSEKMKEKIRELESHQSECLHLQEWLQSLEKDSQALSLVRSELENQIEQLNKEKDSLVWESES 2037
Cdd:TIGR00618 192 LHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2038 LQTKLSESEHEKLAITKALEAAlmekgevavRLSSTQEEVHQLRKGIEKLRVRIEADEKKQLHVSEKLKESERRNDSLQD 2117
Cdd:TIGR00618 272 LRAQEAVLEETQERINRARKAA---------PLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEE 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2118 KVETLERELQMAEENQelvilDAENCKAEVETLKTQIELMTERLKDLELDLvTIRSEKENLLKQLQEK-QGQASELDTLL 2196
Cdd:TIGR00618 343 QRRLLQTLHSQEIHIR-----DAHEVATSIREISCQQHTLTQHIHTLQQQK-TTLTQKLQSLCKELDIlQREQATIDTRT 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2197 SSLKNLLEEKEREKIQTKEEAKSAVEMLQTQLRELTEEIAALCDDQETwkveEQSLDSPAQEVQQLRNnieklkVHLDID 2276
Cdd:TIGR00618 417 SAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQES----AQSLKEREQQLQTKEQ------IHLQET 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2277 KKKQLQILEKLKESEHQADFLKDTVEnLERELKLSGEnqehvtleaekskaeVETLKATVEKMDQNLRGLQLDLVNIRSE 2356
Cdd:TIGR00618 487 RKKAVVLARLLELQEEPCPLCGSCIH-PNPARQDIDN---------------PGPLTRRMQRGEQTYAQLETSEEDVYHQ 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2357 KEDLTKELQKEQSRvseletlnssfENLLREKEQEKVQMKEESKAAVEMLQTQLKELSEEVailcvdQETWKVEEQSLDS 2436
Cdd:TIGR00618 551 LTSERKQRASLKEQ-----------MQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLT------EKLSEAEDMLACE 613
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2437 PLEEIQQLRNNIGKLKVCLDADKKQQLHILEKLKESEHQADFLKDTV-ENLERELKLSGENQEHVTLEAEKSKAEVETLK 2515
Cdd:TIGR00618 614 QHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVrEHALSIRVLPKELLASRQLALQKMQSEKEQLT 693
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2516 ATVEEMDQNLRGLQLDLVNIRSDKEDLTKELQKEQSRVSELETLNSSFENLLRE-KEQEKVQMKEESKAAVEMLQKEL-- 2592
Cdd:TIGR00618 694 YWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKElMHQARTVLKARTEAHFNNNEEVTaa 773
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2593 EELNEKMAALGNDQETRKVKEQSLSSQVDSLEHEKAQllqdldDAKSNYMILQSSVNDLIQEVEDGKQKLEKKDEEISIL 2672
Cdd:TIGR00618 774 LQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQ------EIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEI 847
|
730 740 750
....*....|....*....|....*....|..
gi 528980992 2673 KSQTRDQEQLVSKLSQMEGEQQLWKKQKADLE 2704
Cdd:TIGR00618 848 THQLLKYEECSKQLAQLTQEQAKIIQLSDKLN 879
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2250-2508 |
1.98e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 1.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2250 QSLDSPAQEVQQLRNNIEKLKVHLDIDKKKQLQILEKLKESEHQADFLKDTVENLERELKLsgenqehvtleaekskaev 2329
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAA------------------- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2330 etLKATVEKMDQNLRGLQLDLVNIRSEKEDLTKELQKeQSRVSELETL--NSSFENLLREKEQEKvQMKEESKAAVEMLQ 2407
Cdd:COG4942 81 --LEAELAELEKEIAELRAELEAQKEELAELLRALYR-LGRQPPLALLlsPEDFLDAVRRLQYLK-YLAPARREQAEELR 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2408 TQLKELSEEVAILCVDQETWKVEEQSLDSPLEEIQQLRNNIGKLKVCLDADKKQQLHILEKLKESEHQadfLKDTVENLE 2487
Cdd:COG4942 157 ADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE---LEALIARLE 233
|
250 260
....*....|....*....|.
gi 528980992 2488 RELKLSGENQEHVTLEAEKSK 2508
Cdd:COG4942 234 AEAAAAAERTPAAGFAALKGK 254
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
435-763 |
2.22e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.94 E-value: 2.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 435 LQAELDKVTSVKQQIEKKLEEFKQNFSKTEQALQASQTKE---NELRRSSEEMKRENSLLKSQSEQRAREVCHLEEELKK 511
Cdd:TIGR04523 171 LENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIqknKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISN 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 512 AKQ--------------CLSQSQNFAEEMKAKNTSQETMLRDLQEKI---NQQENSLTLEKLKLALADLEKQRDCSQDLL 574
Cdd:TIGR04523 251 TQTqlnqlkdeqnkikkQLSEKQKELEQNNKKIKELEKQLNQLKSEIsdlNNQKEQDWNKELKSELKNQEKKLEEIQNQI 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 575 KKREHHIEQLNEKLSKTERESEALLSALELKKKEYEELKEEKTLFSRWKSENEQLLNQMESEKESLQSKVNHLETCLKTQ 654
Cdd:TIGR04523 331 SQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQK 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 655 QIKSHEYNERVRTLEMERENLNVEIRNLQNVIDSKTAEAETQKRAYGELQQKAEFSDQK---HEKEIENMCLKISHLTGQ 731
Cdd:TIGR04523 411 DEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQlkvLSRSINKIKQNLEQKQKE 490
|
330 340 350
....*....|....*....|....*....|..
gi 528980992 732 VEDLEHKLQLLSSEIMDKDQRYQDLHAESESL 763
Cdd:TIGR04523 491 LKSKEKELKKLNEEKKELEEKVKDLTKKISSL 522
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
2719-3008 |
2.43e-04 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 46.06 E-value: 2.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2719 SKNDALQDTLEALQNSSRNLEKELELTKLEKMSFVEKVNTMTVKETELQKEIHAVIQKTVALKEEfsgeknrlmeeLNLM 2798
Cdd:COG1340 1 SKTDELSSSLEELEEKIEELREEIEELKEKRDELNEELKELAEKRDELNAQVKELREEAQELREK-----------RDEL 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2799 LEEVKSSKGQLKELMLENSELKKSLDcVHKDRMEEQGKMRGEIAEYQLRLQEAENKHQALLLDTNKQHEM--EIQTYREK 2876
Cdd:COG1340 70 NEKVKELKEERDELNEKLNELREELD-ELRKELAELNKAGGSIDKLRKEIERLEWRQQTEVLSPEEEKELveKIKELEKE 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2877 LTSKEECLSSQKV------EIDLLKSSKEELNNSLKATTEILEELKKTKMENLKHADKLKKENDRAQSKIKLLVKSCKQL 2950
Cdd:COG1340 149 LEKAKKALEKNEKlkelraELKELRKEAEEIHKKIKELAEEAQELHEEMIELYKEADELRKEADELHKEIVEAQEKADEL 228
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 528980992 2951 EEEKVMLQKELSHLEAAQEKQRADTVVdanvdeliTEMKELKETLEEKTKEADEYLDK 3008
Cdd:COG1340 229 HEEIIELQKELRELRKELKKLRKKQRA--------LKREKEKEELEEKAEEIFEKLKK 278
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
620-1373 |
2.60e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.97 E-value: 2.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 620 SRWKSENEQLLNQMESEKESL---QSKVNHLETCLKTQQIKShEYNERVRTLEMERENLnvEIRNLQNVIDSKTAEAETQ 696
Cdd:TIGR02168 168 SKYKERRKETERKLERTRENLdrlEDILNELERQLKSLERQA-EKAERYKELKAELREL--ELALLVLRLEELREELEEL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 697 KRAYGELQQK-AEFSDQKHEKE--IENMCLKISHLTGQVEDLEHKLQLLSSEIMDKDQRYQDLhaeSESLRDLLKSRDSS 773
Cdd:TIGR02168 245 QEELKEAEEElEELTAELQELEekLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQIL---RERLANLERQLEEL 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 774 AMTIEPHQRSRLAFEQQSA-LNNSFANIIGEQESVPSERSRCHVATDQSPKSSSMLQ---NRVVSLEFSLESQKQMN--- 846
Cdd:TIGR02168 322 EAQLEELESKLDELAEELAeLEEKLEELKEELESLEAELEELEAELEELESRLEELEeqlETLRSKVAQLELQIASLnne 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 847 --------SDLQKQCEELVQIKGEIEENLMKAE-QMHQSFVAETSQRISKLQEDTSVHQNVVAETLAALESKERELQLLN 917
Cdd:TIGR02168 402 ierlearlERLEDRRERLQQEIEELLKKLEEAElKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 918 EKLETEQAETGELKK--NNHL-LQESLKEL-----------QFLSETLSLEKK-----------ELNSIISLN----KKD 968
Cdd:TIGR02168 482 RELAQLQARLDSLERlqENLEgFSEGVKALlknqsglsgilGVLSELISVDEGyeaaieaalggRLQAVVVENlnaaKKA 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 969 IEELTQENGT------LKEINATLTQ-EKMNLLQKTESFSNCIDERDRSISELSNQYkQERLTLLQRCEETGNAFQDLSE 1041
Cdd:TIGR02168 562 IAFLKQNELGrvtflpLDSIKGTEIQgNDREILKNIEGFLGVAKDLVKFDPKLRKAL-SYLLGGVLVVDDLDNALELAKK 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1042 KY---------------------KAVQEKNSKLEcllsectgvcedRKNELGQLKETFARehqafvsQLALAEERNQNLI 1100
Cdd:TIGR02168 641 LRpgyrivtldgdlvrpggvitgGSAKTNSSILE------------RRREIEELEEKIEE-------LEEKIAELEKALA 701
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1101 vELETVQQALQSEITDIQ---NSSKRETDGLKQEIMNLKEEQNKMQQEVSALLQENEHL----MELMKTKHEHQCLELEP 1173
Cdd:TIGR02168 702 -ELRKELEELEEELEQLRkelEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELeaeiEELEERLEEAEEELAEA 780
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1174 IQDSEKEEREINtchlQLPMDLDVKDTSPDTCNAQLVQVESKVRNMELKLQKSEKE-ECLQYELQTRELETEDLQQDPQS 1252
Cdd:TIGR02168 781 EAEIEELEAQIE----QLKEELKALREALDELRAELTLLNEEAANLRERLESLERRiAATERRLEDLEEQIEELSEDIES 856
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1253 --QDISGLGDSEIDPEEKYISVLQELSTSQQDNAHLQCSLQTAMNKLNELEKMCEALQVEKSELISELNDSRSECITATs 1330
Cdd:TIGR02168 857 laAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLE- 935
|
810 820 830 840
....*....|....*....|....*....|....*....|...
gi 528980992 1331 kmaeevGKLVNEVETLNDENALLQGELVEETPEGEFGEQQDEQ 1373
Cdd:TIGR02168 936 ------VRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARR 972
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
40-228 |
2.61e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 2.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 40 QLETLEAALQKQKQKVENEKTEGANLKRENQSLMEICENLEKTKQKISHELQVKESQVNFQEGQLNSSKKQIEKLEQELK 119
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 120 RCKSELERSQQAAQsadvsLNSCLTPQKIFATPLTPSQYYSGSKY------------EDLKEKYNKEVEERKRLEAEVKA 187
Cdd:COG4942 101 AQKEELAELLRALY-----RLGRQPPLALLLSPEDFLDAVRRLQYlkylaparreqaEELRADLAELAALRAELEAERAE 175
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 528980992 188 LQAKKASQTIPQSTMNhRDIARHQASSSVFSWQQEKTPSRL 228
Cdd:COG4942 176 LEALLAELEEERAALE-ALKAERQKLLARLEKELAELAAEL 215
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
2075-2269 |
2.63e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 46.77 E-value: 2.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2075 EEVhqLRKGIEKLRVRIE-ADEKKQLHVSEKLKESERRNDSLQDKVETLErelqmaeenqelvildaenckAEVETLKTQ 2153
Cdd:COG2433 379 EEA--LEELIEKELPEEEpEAEREKEHEERELTEEEEEIRRLEEQVERLE---------------------AEVEELEAE 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2154 IELMTERLKDLELDLVTIRSEKENLLKQLQEkqgqASELDTLLSSLKNLLEEKEREkiqtkeeaksavemlqtqLRELTE 2233
Cdd:COG2433 436 LEEKDERIERLERELSEARSEERREIRKDRE----ISRLDREIERLERELEEERER------------------IEELKR 493
|
170 180 190
....*....|....*....|....*....|....*..
gi 528980992 2234 EIAALcddQETWKVEEQSLDSPAQEVQQL-RNNIEKL 2269
Cdd:COG2433 494 KLERL---KELWKLEHSGELVPVKVVEKFtKEAIRRL 527
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
19-748 |
2.80e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.98 E-value: 2.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 19 KIQELEGQLDKLKKERQQR------QFQLETLEA--------ALQKQKQKVENE----KTEGANLKRENQSLMEICENLE 80
Cdd:TIGR02169 192 IIDEKRQQLERLRREREKAeryqalLKEKREYEGyellkekeALERQKEAIERQlaslEEELEKLTEEISELEKRLEEIE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 81 KTKQKISHELQVK--ESQVNFQEgQLNSSKKQIEKLEQELKRCKSELERSQQAAQSADVSLNSCLtpqkifatpltpsqy 158
Cdd:TIGR02169 272 QLLEELNKKIKDLgeEEQLRVKE-KIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLL--------------- 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 159 ysgSKYEDLKEKYNKEVEERKRLEAEVKALQAKkasqtipqstmnhRDIARHQAsssvfswQQEKTPSRLSSNTLKTPVR 238
Cdd:TIGR02169 336 ---AEIEELEREIEEERKRRDKLTEEYAELKEE-------------LEDLRAEL-------EEVDKEFAETRDELKDYRE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 239 RDFSASHFSGEQEVTPSRSTLQIGKTDANssfcdnssnshlLDQLKAQNQELRSKMSELELRLQGQEKEMKGQVNKLQEL 318
Cdd:TIGR02169 393 KLEKLKREINELKRELDRLQEELQRLSEE------------LADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQL 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 319 QLQLEKAKVELNEKEKVLNKNRDELVRTTSQYDQASAKCTALEQ------------------------KLKKLTEDLSCQ 374
Cdd:TIGR02169 461 AADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEErvrggraveevlkasiqgvhgtvaQLGSVGERYATA 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 375 RQNAESARCSLEQKIKEKEKEFQEELSRQQRSFQTLDQECTQMKAR---------------------------------- 420
Cdd:TIGR02169 541 IEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRATFLPLNKMRDErrdlsilsedgvigfavdlvefdpkyepafkyvf 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 421 ----LTQELQQAKNTYNI-----LQAEL--------------DKVTSVKQQIEKKLEEFKQNFSKTEQALQASQTKENEL 477
Cdd:TIGR02169 621 gdtlVVEDIEAARRLMGKyrmvtLEGELfeksgamtggsrapRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRI 700
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 478 RRSSEEMKRENSLLKSQSEQRAREVCHLEEELKKAKQCLSQSQNFAEEMKAKNTSQETMLRDLQEKINQQEnsLTLEKLK 557
Cdd:TIGR02169 701 ENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELE--EDLHKLE 778
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 558 LALADLEkqRDCSQDLLKKREHHIEQLNEKLSKTERESEALLSALELKKKEYEELKEEKTLFSRWKSENEQLLNQMESEK 637
Cdd:TIGR02169 779 EALNDLE--ARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEI 856
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 638 ESLQSKVNHLETCLKTQQIKSHEYNERVRTLEMERENLNVEIRNLQNVIDSKTAEAETQKRAYGELQQKAEFSDQKhEKE 717
Cdd:TIGR02169 857 ENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEE-LSE 935
|
810 820 830
....*....|....*....|....*....|....
gi 528980992 718 IENMCLKISHLTGQV---EDLEHKLQLLSSEIMD 748
Cdd:TIGR02169 936 IEDPKGEDEEIPEEElslEDVQAELQRVEEEIRA 969
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
316-598 |
3.09e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 46.83 E-value: 3.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 316 QELQLQLEKAK--VELNEKEKVLNKNRDELVRTTSQYDQASAKCTALEQKLKKLTEDLscqrQNAESARCSLEQKIKEKE 393
Cdd:PRK11281 39 ADVQAQLDALNkqKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKL----RQAQAELEALKDDNDEET 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 394 KEFQEELSR---QQRSFQTLDQEctqmkarltQELQQAKNTYNIL-----------QAELDKVTSVKQQIEKKLEEFKQN 459
Cdd:PRK11281 115 RETLSTLSLrqlESRLAQTLDQL---------QNAQNDLAEYNSQlvslqtqperaQAALYANSQRLQQIRNLLKGGKVG 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 460 ---FSKTEQAL----QASQTKENELRRSSEEmkrENSLLksqseqrarevchleeelkkakQCLSQSQNfaEEMKAKNTS 532
Cdd:PRK11281 186 gkaLRPSQRVLlqaeQALLNAQNDLQRKSLE---GNTQL----------------------QDLLQKQR--DYLTARIQR 238
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 528980992 533 QETMLRDLQEKINQQENSLTLEKLKLALADLEKQRDCSQDLLKKREHHIEQLNEKLSKTERESEAL 598
Cdd:PRK11281 239 LEHQLQLLQEAINSKRLTLSEKTVQEAQSQDEAARIQANPLVAQELEINLQLSQRLLKATEKLNTL 304
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
2614-2743 |
3.67e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.92 E-value: 3.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2614 QSLSSQVDSLEHEKAQLLQDLDDAKSNYMILQSSVNDLIQEVEDGKQKLEKKDEEISILKSQ-TRDQEQLVS-----KLS 2687
Cdd:COG1579 13 QELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARiKKYEEQLGNvrnnkEYE 92
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 528980992 2688 QMEGEQQLWKKQKADLENLMVELEQKIQVLQSKNDALQDTLEALQNSSRNLEKELE 2743
Cdd:COG1579 93 ALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELD 148
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
2018-2258 |
4.52e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.59 E-value: 4.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2018 ENQIEQLNKEKDSLVWESESLQTKLSESEHEKLAITKALEAALmekgevaVRLSSTQEEVHQLRKGIEKLRVRIEADEkk 2097
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQ-------AELEALQAEIDKLQAEIAEAEAEIEERR-- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2098 qlhvsEKLKE---SERRNDSLQDKVETlereLQMAEENQELVildaenckAEVETLKTQIELMTERLKDLELDLVTIRSE 2174
Cdd:COG3883 86 -----EELGErarALYRSGGSVSYLDV----LLGSESFSDFL--------DRLSALSKIADADADLLEELKADKAELEAK 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2175 KENLLKQLQEKQGQASELDTLLSSLKNLLEEKEREKIQTKEEAKSAVEMLQTQLRELTEEIAALCDDQETWKVEEQSLDS 2254
Cdd:COG3883 149 KAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAA 228
|
....
gi 528980992 2255 PAQE 2258
Cdd:COG3883 229 AAAA 232
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
2035-2457 |
4.58e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 45.66 E-value: 4.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2035 SESLQTKLSESEHEKLAITKALEAALMEKGEVAVRLSSTQEEVHQLRKGiekLRVRIEADEKKQLHVSEKLKESERRNDS 2114
Cdd:pfam07888 29 AELLQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRE---LESRVAELKEELRQSREKHEELEEKYKE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2115 LQDKVEtlerelQMAEENQELVILDAENcKAEVETLKTQIELMTERLKDLELDLVTIRSEKENLLKQLQEkqgqaseldt 2194
Cdd:pfam07888 106 LSASSE------ELSEEKDALLAQRAAH-EARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKE---------- 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2195 llsslknllEEKEREKIQTKEEAKsavemlQTQLRELTEEIAALcddqetwkveEQSLDSPAQEVQQLRNNIEKLKVHLD 2274
Cdd:pfam07888 169 ---------EEAERKQLQAKLQQT------EEELRSLSKEFQEL----------RNSLAQRDTQVLQLQDTITTLTQKLT 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2275 IDKKKQLQ---ILEKLKESEHQADFLKDTVENLERELKLSGENQEHVtlEAEKSKAEVETLKATVEKMDQNLrGLQLDLV 2351
Cdd:pfam07888 224 TAHRKEAEneaLLEELRSLQERLNASERKVEGLGEELSSMAAQRDRT--QAELHQARLQAAQLTLQLADASL-ALREGRA 300
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2352 NIRSEKEDLTKELQKEQSRVSELETLNSSFENLLREKEQEKVQMKEESKAAVEMLQTQLKELSEEVAILCVDQETWKVEE 2431
Cdd:pfam07888 301 RWAQERETLQQSAEADKDRIEKLSAELQRLEERLQEERMEREKLEVELGREKDCNRVQLSESRRELQELKASLRVAQKEK 380
|
410 420
....*....|....*....|....*.
gi 528980992 2432 QSLdspLEEIQQLRNNIGKLKVCLDA 2457
Cdd:pfam07888 381 EQL---QAEKQELLEYIRQLEQRLET 403
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
2040-2597 |
4.58e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 46.22 E-value: 4.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2040 TKLSESEHEKLAITKALEAALMEKGEVavrLSSTQEEVHQLRKgieklRVRIEADEKKQLHVSEKLKESERRNDSLQDKV 2119
Cdd:COG5022 820 IKLQKTIKREKKLRETEEVEFSLKAEV---LIQKFGRSLKAKK-----RFSLLKKETIYLQSAQRVELAERQLQELKIDV 891
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2120 ETLE-RELQMAEENQELVILDAENCKAEVETLKTQIELMTeRLKDL--ELDLVTIRSEKENLLKQLQEKQGQASELDTLL 2196
Cdd:COG5022 892 KSISsLKLVNLELESEIIELKKSLSSDLIENLEFKTELIA-RLKKLlnNIDLEEGPSIEYVKLPELNKLHEVESKLKETS 970
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2197 SSLKNLL---EEKEREKIQTKEEAKSAVEMLQTQLRELteeiAALCDDQETWKVEEQSLDSPAQEVQQLRNNIEKLKVHL 2273
Cdd:COG5022 971 EEYEDLLkksTILVREGNKANSELKNFKKELAELSKQY----GALQESTKQLKELPVEVAELQSASKIISSESTELSILK 1046
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2274 DIDKkkqLQILEKLKESEHQADFLkdtVENLERELKLSGENQEHVtleAEKSKAEVETLKATVEKM-DQNLRGLQLDLVN 2352
Cdd:COG5022 1047 PLQK---LKGLLLLENNQLQARYK---ALKLRRENSLLDDKQLYQ---LESTENLLKTINVKDLEVtNRNLVKPANVLQF 1117
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2353 IRSE--KEDLTKELQKEQSR-VSELETLNSSFENLLREKEQEKVQMKEESKAAVEMLQTQLKELSEEVAILCVDQETWKV 2429
Cdd:COG5022 1118 IVAQmiKLNLLQEISKFLSQlVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFAALSEKRLYQSALYDEKSKLSSS 1197
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2430 EEQSLDSPLEEIQQLRNNIGKLKVCLDADKKQQLHILE---KLKESEHQADFlKDTVENLERELKLSGENQEHVTLEAEK 2506
Cdd:COG5022 1198 EVNDLKNELIALFSKIFSGWPRGDKLKKLISEGWVPTEystSLKGFNNLNKK-FDTPASMSNEKLLSLLNSIDNLLSSYK 1276
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2507 SKAEVETlkATVEEMDQNLRGLQLDLvnIRSDKEDLTKELQKEQSRVSELEtlnssfENLLREKEQEKVQMK-EESKAAV 2585
Cdd:COG5022 1277 LEEEVLP--ATINSLLQYINVGLFNA--LRTKASSLRWKSATEVNYNSEEL------DDWCREFEISDVDEElEELIQAV 1346
|
570
....*....|..
gi 528980992 2586 EMLQKELEELNE 2597
Cdd:COG5022 1347 KVLQLLKDDLNK 1358
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1944-2231 |
4.80e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 46.10 E-value: 4.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1944 LEEGLSVVTSERDQLRGELDTLSKENQELDQMSEKMKEKIRELESHQSECLHLQEWLQSLEKDSQALSLVRSELEN---Q 2020
Cdd:COG3096 363 LEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTRAIQYQQAVQALEKARALCGLPDLTPENaedY 442
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2021 IEQLNKEKDSLVWESESLQTKLSESEHEKLAITKALEAALMEKGEVAvRLSSTQEEVHQLRKGIE---------KLRVR- 2090
Cdd:COG3096 443 LAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCKIAGEVE-RSQAWQTARELLRRYRSqqalaqrlqQLRAQl 521
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2091 --IEADEKKQLHVSEKLKESERRNDSLQDKVETLERELQMAEENQELVILDAENCKAEVETLKTQIELMTERLKDLElDL 2168
Cdd:COG3096 522 aeLEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELA-AR 600
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 528980992 2169 VTIRSEKENLLKQLQEKQGQASELDTLLSSLKNLLEEKEREKIQTKEEAKSAVEMLQTQLREL 2231
Cdd:COG3096 601 APAWLAAQDALERLREQSGEALADSQEVTAAMQQLLEREREATVERDELAARKQALESQIERL 663
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
416-601 |
4.95e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 4.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 416 QMKARLTQELQQAKNTYNILQAELDKVTSVKQQIEKKLEEFKQNFSKTEQALQASQTKENELRRSSEEMKRENSLLKSQS 495
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 496 EQRAREVCHLEE----ELKKAKQCLSQSQNFAEEMKAKNTSQETMLRDL---QEKINQQENSLTLEK--LKLALADLEKQ 566
Cdd:COG4942 107 AELLRALYRLGRqpplALLLSPEDFLDAVRRLQYLKYLAPARREQAEELradLAELAALRAELEAERaeLEALLAELEEE 186
|
170 180 190
....*....|....*....|....*....|....*
gi 528980992 567 RDCSQDLLKKREHHIEQLNEKLSKTERESEALLSA 601
Cdd:COG4942 187 RAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
2512-3000 |
5.52e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.98 E-value: 5.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2512 ETLKATVEEMDQNLRGLQL--DLVNIRSDKEDLTKELQKEQSRVSELETLNSSFENLLREKEQEKVQMKEESKAAVEMLQ 2589
Cdd:pfam12128 214 PKSRLNRQQVEHWIRDIQAiaGIMKIRPEFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLR 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2590 KELEELNEKMAALGNDQETRKVKEQSLSSQVDSLEHEKAQLLQ-DLDDAKSNYMILQSSVNDLiQEVEDGKQKLEKKDEE 2668
Cdd:pfam12128 294 TLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDaDIETAAADQEQLPSWQSEL-ENLEERLKALTGKHQD 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2669 ISiLKSQTRDQ---EQLVSKLSQMEGEQQlwkKQKADLENLMVELEQKIQVLQSkndALQDTLEALQNSSRNLEKELEL- 2744
Cdd:pfam12128 373 VT-AKYNRRRSkikEQNNRDIAGIKDKLA---KIREARDRQLAVAEDDLQALES---ELREQLEAGKLEFNEEEYRLKSr 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2745 ----------------TKLEKMSFVEKVNTMTVKETELQKEIHAVIQKTVALKEEFSgEKNRLMEELNLMLEEVKSSKGQ 2808
Cdd:pfam12128 446 lgelklrlnqatatpeLLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRD-QASEALRQASRRLEERQSALDE 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2809 LKELM------------------------LENSELKKSLDcVHKDRMEEQGKMRGEIAEYQLRLQEAENKHQALLLDTNK 2864
Cdd:pfam12128 525 LELQLfpqagtllhflrkeapdweqsigkVISPELLHRTD-LDPEVWDGSVGGELNLYGVKLDLKRIDVPEWAASEEELR 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2865 ----QHEMEIQTYREKLTSKEECLSSQKVEIDLLKSSKEELNNSLKATTEILEELKKTKM-ENLKHADKLKKENDRAQSK 2939
Cdd:pfam12128 604 erldKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQsEKDKKNKALAERKDSANER 683
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 528980992 2940 IKLLVKSCKQLE-EEKVMLQK-ELSHLEAAQEKQRADTVVDANVDELITEMKELKETLEEKTK 3000
Cdd:pfam12128 684 LNSLEAQLKQLDkKHQAWLEEqKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAK 746
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1894-2097 |
5.94e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 5.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1894 QVENELQRIQSEKDSMEHHALSAEASLEAVQTEKLYLEKDNENKQTVITCLEEGLSVVTSERDQLRGELDTLSKENQELD 1973
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1974 QM----------------------SEKMKEKIRELESHQSECLHLQEWLQSLEKDSQALSLVRSELENQIEQLNKEKDSL 2031
Cdd:COG4942 104 EElaellralyrlgrqpplalllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAEL 183
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 528980992 2032 vwesESLQTKLSESEHEKLAITKALEAalmEKGEVAVRLSSTQEEVHQLRKGIEKLRVRIEADEKK 2097
Cdd:COG4942 184 ----EEERAALEALKAERQKLLARLEK---ELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
18-135 |
6.01e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.70 E-value: 6.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 18 QKIQELEGQLDKLKKERQQRQFQLETLEAALQKQKQKVENEKTEGANLKRENQSLMEICENLEKTKQKISHELQVKESQV 97
Cdd:COG1196 253 AELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEEL 332
|
90 100 110
....*....|....*....|....*....|....*...
gi 528980992 98 NFQEGQLNSSKKQIEKLEQELKRCKSELERSQQAAQSA 135
Cdd:COG1196 333 EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA 370
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1955-2414 |
6.33e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 45.71 E-value: 6.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1955 RDQLRGELDTLSKENQELDQMSekmkekiRELEshqseclHLQEWLQSLEKDSQA----LSLVRSELENQiEQLNKEKDS 2030
Cdd:COG3096 291 RRELFGARRQLAEEQYRLVEMA-------RELE-------ELSARESDLEQDYQAasdhLNLVQTALRQQ-EKIERYQED 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2031 LvwesESLQTKLSESEheklaitKALEAALMEKGEVAVRLSSTQEEVHQLRKGIeklrvrieADekkqlhVSEKLKESER 2110
Cdd:COG3096 356 L----EELTERLEEQE-------EVVEEAAEQLAEAEARLEAAEEEVDSLKSQL--------AD------YQQALDVQQT 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2111 RNDSLQDKVETLERelqmAEENQELVILDAENCKAEVETLKTQIELMTERLKDLEldlvtirsekenllKQLQEKQGQAS 2190
Cdd:COG3096 411 RAIQYQQAVQALEK----ARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELE--------------QKLSVADAARR 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2191 ELDTLLSSLKNLLEEKEREkiqtkEEAKSAVEMLqtqlrelteeiaalcddqETWKveeqSLDSPAQEVQQLRnnieklk 2270
Cdd:COG3096 473 QFEKAYELVCKIAGEVERS-----QAWQTARELL------------------RRYR----SQQALAQRLQQLR------- 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2271 vhldidkkKQLQILEKLKESEHQADFLkdtVENLERELKLSGENQEHVTLEAEKSKAEVETLKATVEKMDQNLRGLQLDL 2350
Cdd:COG3096 519 --------AQLAELEQRLRQQQNAERL---LEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQL 587
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 528980992 2351 VNIRSEKEDLTK------ELQKEQSRVSEL--ETLNSS-----FENLLREKEQEKVQMKEESKAAVEMLQTQLKELS 2414
Cdd:COG3096 588 EQLRARIKELAArapawlAAQDALERLREQsgEALADSqevtaAMQQLLEREREATVERDELAARKQALESQIERLS 664
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
2104-2238 |
6.50e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.15 E-value: 6.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2104 KLKESERRNDSLQDKVETLERELQMAEENQELVILDAENCKAEVETLKTQIELMTERLKDLELDLVTIRSEKE------- 2176
Cdd:COG1579 18 ELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEyealqke 97
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 528980992 2177 ---------NLLKQLQEKQGQASELDTLLSSLKNLLEEKEREKIQTKEEAKSAVEMLQTQLRELTEEIAAL 2238
Cdd:COG1579 98 ieslkrrisDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREEL 168
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
425-958 |
6.79e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.44 E-value: 6.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 425 LQQAKNTYNILQAELDKVTSVKQQIEKKLEEFKQNFSKTEQALQASQTKENELRRSSEEMKRENSLL---KSQSEQRARE 501
Cdd:PRK03918 167 LGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELeelKEEIEELEKE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 502 VCHLEEELKKAKQCLSQSQNFAEEMKAKNTSQETMLRDLQEKINQQENSLTLEKLK-----------LALADLEKQRDCS 570
Cdd:PRK03918 247 LESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYeeyldelreieKRLSRLEEEINGI 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 571 QDLLKKREH---HIEQLNEKLSKTERESEALLSALELKKKEYEELKEEKTLFSRWKSEN----EQLLNQMESEKESLQSK 643
Cdd:PRK03918 327 EERIKELEEkeeRLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTpeklEKELEELEKAKEEIEEE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 644 VNHLETCLKTQQIKSHEYNERVRTL---------------EMERENLNVEIRNLQNVIDSKTAEAETQKRaygelQQKAE 708
Cdd:PRK03918 407 ISKITARIGELKKEIKELKKAIEELkkakgkcpvcgreltEEHRKELLEEYTAELKRIEKELKEIEEKER-----KLRKE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 709 FSDQKHEKEIENMCLKISHLTGQVEDLEHKLQLLSSEIMDKDQR-YQDLHAESESLRDLLKSRDSSAMTIEPHQRSRLAF 787
Cdd:PRK03918 482 LRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEeYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAEL 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 788 EQQ-SALNNSFANIIGEQESVPSERSRCHVATDQSPKSSS----MLQNRVVSLEFSLESQKQMNSDLQKQCEELVQIKGE 862
Cdd:PRK03918 562 EKKlDELEEELAELLKELEELGFESVEELEERLKELEPFYneylELKDAEKELEREEKELKKLEEELDKAFEELAETEKR 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 863 IEENLMKAEQMHQSFVAETSQRISKLQEDTSVHQNVVAETLAALESKERELQLLNEKLETEQAETGELKKNNHLLQESLK 942
Cdd:PRK03918 642 LEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALE 721
|
570
....*....|....*.
gi 528980992 943 ELQFLSETLSLEKKEL 958
Cdd:PRK03918 722 RVEELREKVKKYKALL 737
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
443-648 |
6.88e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 6.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 443 TSVKQQIEKKLEEFKQNFSKTEQALQASQTKENELRRSSEEmkrenslLKSQSEQRAREVCHLEEELKKAKQCLSQSQnf 522
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAA-------LERRIAALARRIRALEQELAALEAELAELE-- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 523 aEEMKAKNTSQETMLRDLQEKINQQENSLTLEKLKLAL-----ADLEKQRDCSQDLLKKREHHIEQLNEKLSKTERESEA 597
Cdd:COG4942 90 -KEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLspedfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 528980992 598 LLSALELKKKEYEELKEEKTLFSRWKSENEQLLNQMESEKESLQSKVNHLE 648
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQ 219
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
537-1217 |
7.26e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.49 E-value: 7.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 537 LRDLQEKINQQENSLTLEK---------LKLALADLEKQRDCSQDLLKKREHHIEQLNEKLSKTERESEAllsALELKKK 607
Cdd:pfam15921 87 VKDLQRRLNESNELHEKQKfylrqsvidLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEA---AKCLKED 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 608 EYEELKEEKTLFSRWKSENEQLLNQMES---EKESLQSKVNHLETCLKTQQIKS--HEYNERVRTLEMERENLNVEIRNL 682
Cdd:pfam15921 164 MLEDSNTQIEQLRKMMLSHEGVLQEIRSilvDFEEASGKKIYEHDSMSTMHFRSlgSAISKILRELDTEISYLKGRIFPV 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 683 QNVIDskTAEAETQKRAYGELQQKAEFSDQ---KHEKEIENMCLKISHLTGQVEDLEHKLQLLSSEIMDKDQRYQDLHAE 759
Cdd:pfam15921 244 EDQLE--ALKSESQNKIELLLQQHQDRIEQlisEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSD 321
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 760 SESLRDLLKSRDSSAMTIEPHQRSRLafEQQSALNNSfaniigEQESVPSERSRCHVAT----DQSPKSSSMLQNRVVSL 835
Cdd:pfam15921 322 LESTVSQLRSELREAKRMYEDKIEEL--EKQLVLANS------ELTEARTERDQFSQESgnldDQLQKLLADLHKREKEL 393
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 836 EFSLESQKQMNSDLQKQCEELVQIKGEIEENLMKAEQMHQSFVAETSQRISKLQEDTSVHQ------NVVAETLAALESK 909
Cdd:pfam15921 394 SLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQgkneslEKVSSLTAQLEST 473
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 910 ERELQ-------------------------LLNEKLETEQAETGELKKNNHLLQESLKELQFLS-------------ETL 951
Cdd:pfam15921 474 KEMLRkvveeltakkmtlessertvsdltaSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKnegdhlrnvqtecEAL 553
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 952 SLEKKELNSIISLNKKDIEELTQ-------ENGTLKEINATLTQEKMNLLQKTESFSNCIDERDRSISELSNQY------ 1018
Cdd:pfam15921 554 KLQMAEKDKVIEILRQQIENMTQlvgqhgrTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVsdlele 633
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1019 ------------------KQERLTLLQRCEETGNAFQDLSEKYKAVQE----KNSKLECLLSECTGVCEDRKNELGQLKE 1076
Cdd:pfam15921 634 kvklvnagserlravkdiKQERDQLLNEVKTSRNELNSLSEDYEVLKRnfrnKSEEMETTTNKLKMQLKSAQSELEQTRN 713
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1077 TF-----AREHQAFVS---QLALAEERNQnlIVELETVQQALQSEITDIQNSS---KRETDGLKQEIMNLKEEQNKMQQE 1145
Cdd:pfam15921 714 TLksmegSDGHAMKVAmgmQKQITAKRGQ--IDALQSKIQFLEEAMTNANKEKhflKEEKNKLSQELSTVATEKNKMAGE 791
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1146 VSALLQENEHLMEL---MKTKHEHQCLELEPIQD-SEKEEREinTCHLQLPMDLDVKD------TSPDTCNAQLVQVESK 1215
Cdd:pfam15921 792 LEVLRSQERRLKEKvanMEVALDKASLQFAECQDiIQRQEQE--SVRLKLQHTLDVKElqgpgyTSNSSMKPRLLQPASF 869
|
..
gi 528980992 1216 VR 1217
Cdd:pfam15921 870 TR 871
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
279-1163 |
7.40e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.42 E-value: 7.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 279 LLDQLKAQNQELRSKMSELELRLQGQEKEMKGQVNKLQELQLQLEkakvELNEKEKVLNKNRDELVRTTSQYDQASAKCT 358
Cdd:TIGR00606 211 YLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLK----EIEHNLSKIMKLDNEIKALKSRKKQMEKDNS 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 359 ALEQKLKKLTEDLSCQRQNAESARCSLEQKIKEKEKEFQEELSRQQRSFQTLDQECTQMKARLTQELQQAKNTY------ 432
Cdd:TIGR00606 287 ELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQehirar 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 433 ------NILQAELDKVT-------SVKQQIEKKLEEFKQNFSKTEQALQASQTKENELRRSSEEMKRENSLLKSQSEQRA 499
Cdd:TIGR00606 367 dsliqsLATRLELDGFErgpfserQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKK 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 500 REVCHLEEELKKAKqclSQSQNFAEEMKAKNTSQETMLRDLQEKINQQENSLTLEKLKLALADLEKQRDCSQDLLKKREH 579
Cdd:TIGR00606 447 EILEKKQEELKFVI---KELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQE 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 580 HIEQLNEKLSKTERESEALLSALELKKKEYEELKEEKTLFSR-----WKSENEQLLNQMESEKESLQSKVNHLETCLKTQ 654
Cdd:TIGR00606 524 MEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLlgyfpNKKQLEDWLHSKSKEINQTRDRLAKLNKELASL 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 655 QIKSHEYNERVRTLEMERENLNVEIRNLQNVIDSKTAEAETQKRAYGELQQKAEFSDQK--HEKEIENMCLKISH---LT 729
Cdd:TIGR00606 604 EQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATavYSQFITQLTDENQSccpVC 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 730 GQVEDLEHKLQLLSSEIMDKDQRYQDLHAESESLRDLLKSRDSSAMTIEPHQRSRLAFEQQsalnnsfaniigeqeSVPS 809
Cdd:TIGR00606 684 QRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEK---------------EIPE 748
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 810 ERSRCHVATDQSPKSSSMLQNRVVSLEfSLESQKQMNSDLQKQCEELVQIKGEIEENLMK-AEQMHQSFVAETSQRISKL 888
Cdd:TIGR00606 749 LRNKLQKVNRDIQRLKNDIEEQETLLG-TIMPEEESAKVCLTDVTIMERFQMELKDVERKiAQQAAKLQGSDLDRTVQQV 827
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 889 QEDTSVHQNVVAETLAALESKERELQLLNEKLETEQAETGELKKNNHLLQESLKELQFLSETLSLEKKElnsiislnkkd 968
Cdd:TIGR00606 828 NQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTE----------- 896
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 969 IEELTQENGTLKEINATLTQEKMNLLQKTESFSNCIDERDRSISELSNQYKQERLTLLQRCEETGNAFQDLSEKYKAVQE 1048
Cdd:TIGR00606 897 VQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKE 976
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1049 KN-SKLECLLSECTGVCEDRKNELGQLKETFAREH-QAFVSQLALAEERNQNLIVELETVQQALQSEITDIQ-NSSKRET 1125
Cdd:TIGR00606 977 TElNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKiQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQvLQMKQEH 1056
|
890 900 910
....*....|....*....|....*....|....*...
gi 528980992 1126 DGLKQEIMNLKEEQNKMQQEVSALLQENEHLMELMKTK 1163
Cdd:TIGR00606 1057 QKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREP 1094
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1984-2738 |
7.54e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 45.72 E-value: 7.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1984 RELESHQSECLHLQEWLQSLEKDSQALSLVRSELENQIEQLnKEKDSLVWESESLQTKLSESEHEKLAITKALEAALM-- 2061
Cdd:PRK04863 293 RELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAA-SDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEvv 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2062 -----EKGEVAVRLSSTQEEVHQLRKGIeklrvrieADekkqlhVSEKLKESERRNDSLQDKVETLERelqmAEENQELV 2136
Cdd:PRK04863 372 eeadeQQEENEARAEAAEEEVDELKSQL--------AD------YQQALDVQQTRAIQYQQAVQALER----AKQLCGLP 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2137 ILDAENCKAEVETLKTQIELMTERLKDLEldlvtirsekenllKQLQEKQGQASELDTLLSSLKNLLEEKEREkiQTKEE 2216
Cdd:PRK04863 434 DLTADNAEDWLEEFQAKEQEATEELLSLE--------------QKLSVAQAAHSQFEQAYQLVRKIAGEVSRS--EAWDV 497
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2217 AKSavemlqtqlrelteeiaaLCDDQETWKVEeqsldspAQEVQQLRNnieklkvhldidkkkQLQILEKLKESEHQADF 2296
Cdd:PRK04863 498 ARE------------------LLRRLREQRHL-------AEQLQQLRM---------------RLSELEQRLRQQQRAER 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2297 LkdtVENLERELKLSGENQEHVTLEAEKSKAEVETLKATVEKMDQNLRGLQLDLVNIRSEKEDLTK---ELQKEQSRVSE 2373
Cdd:PRK04863 538 L---LAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAArapAWLAAQDALAR 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2374 L-----ETLNSS-----FENLLREKEQEKVQMKEESKAAVEMLQTQLKELS-------EEVAILCVDQETWKVEEQSLDS 2436
Cdd:PRK04863 615 LreqsgEEFEDSqdvteYMQQLLERERELTVERDELAARKQALDEEIERLSqpggsedPRLNALAERFGGVLLSEIYDDV 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2437 PLEE-------IQQLRNNIGKLKVCLDADKKQQL-----------HILEKLKESEHQADFLKD--TVENLERELKLSG-- 2494
Cdd:PRK04863 695 SLEDapyfsalYGPARHAIVVPDLSDAAEQLAGLedcpedlylieGDPDSFDDSVFSVEELEKavVVKIADRQWRYSRfp 774
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2495 ----------ENQ-EHVTLEAEKSKAEVETLKATVEEMDQNLR------GLQLDLVnIRSDKEDltkELQKEQSRVSELE 2557
Cdd:PRK04863 775 evplfgraarEKRiEQLRAEREELAERYATLSFDVQKLQRLHQafsrfiGSHLAVA-FEADPEA---ELRQLNRRRVELE 850
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2558 TLNSSFEnllrEKEQEKVQMKEESKAAVEMLQKEL--------EELNEKMAALGNDQETRKVKEQSLSSQVDSLEhEKAQ 2629
Cdd:PRK04863 851 RALADHE----SQEQQQRSQLEQAKEGLSALNRLLprlnlladETLADRVEEIREQLDEAEEAKRFVQQHGNALA-QLEP 925
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2630 LLQDLDDAKSNYMILQSSVNDLIQEVEDGKQKLE------------KKDEEISILKSQTRDQEQLVSKLSQMEGEQQLWK 2697
Cdd:PRK04863 926 IVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFaltevvqrrahfSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAR 1005
|
810 820 830 840
....*....|....*....|....*....|....*....|.
gi 528980992 2698 KQKADLENLMVELEQKIQVLQSKNDALQDTLEALQNSSRNL 2738
Cdd:PRK04863 1006 EQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDL 1046
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2775-3052 |
7.94e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.31 E-value: 7.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2775 QKTVALK-EEFSGEKNRLmeELNLMLEEVKSSKGQLKELMLENSELKKSLdcvhKDRMEEQGKMRGEIAEYQLRLQEAEN 2853
Cdd:COG1196 208 QAEKAERyRELKEELKEL--EAELLLLKLRELEAELEELEAELEELEAEL----EELEAELAELEAELEELRLELEELEL 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2854 KHQALLLDTNkQHEMEIQTYREKLTSKEECLSSQKVEIDLLKSSKEELNNSLKATTEILEELKKTKMENLKHADKLKKEN 2933
Cdd:COG1196 282 ELEEAQAEEY-ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2934 DRAQSKIKLLVKSCKQLEEEKVMLQKELSHLEAAQEKQRADTvvdANVDELITEMKELKETLEEKTKEADEYLDKycsLL 3013
Cdd:COG1196 361 AEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQL---EELEEAEEALLERLERLEEELEELEEALAE---LE 434
|
250 260 270
....*....|....*....|....*....|....*....
gi 528980992 3014 ISHEKLEKAKEMLETQVARLSSQQSKLNLRRSPLVNSLA 3052
Cdd:COG1196 435 EEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA 473
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
2448-2638 |
8.95e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.44 E-value: 8.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2448 IGKLKVCLDADKKQQLHILEKLKESEHQADFLKDTVENLERELKLSGENQEHVTLEAEKSKAEVETLKATVEEM--DQNL 2525
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERarALYR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2526 RGLQLDLVNIRSDKEDLTKELqkeqSRVSELETLNSSFENLLREKEQEKVQM---KEESKAAVEMLQKELEELNEKMAAL 2602
Cdd:COG3883 98 SGGSVSYLDVLLGSESFSDFL----DRLSALSKIADADADLLEELKADKAELeakKAELEAKLAELEALKAELEAAKAEL 173
|
170 180 190
....*....|....*....|....*....|....*.
gi 528980992 2603 GNDQETRKVKEQSLSSQVDSLEHEKAQLLQDLDDAK 2638
Cdd:COG3883 174 EAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAE 209
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1916-2531 |
1.00e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.21 E-value: 1.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1916 AEASLEAVQTEKLYLEKDNENKQTVItclEEGLSVVTSERDQLRGELDTLSKENQELDQMSEKMKEKIRELESHQSECLH 1995
Cdd:pfam12128 320 DRSELEALEDQHGAFLDADIETAAAD---QEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIK 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1996 LQEWLQSLEKDSQ--ALSLVRSELENQI-EQLNKEKDSLVWESESLQTKLSEsEHEKLAITKALEAALMEKGEVAVRLSS 2072
Cdd:pfam12128 397 DKLAKIREARDRQlaVAEDDLQALESELrEQLEAGKLEFNEEEYRLKSRLGE-LKLRLNQATATPELLLQLENFDERIER 475
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2073 TQEEVHQLRKGIEKLRVRIEADEKKQLHVSEKLKESERRNDSLQDKVETLE---------------RELQMAEENQELVI 2137
Cdd:pfam12128 476 AREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELElqlfpqagtllhflrKEAPDWEQSIGKVI 555
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2138 LDAENCKAEVETLKTQIELMTER-LKDLELDLV------------TIRSEKENLLKQLQEKQGQASELDTLLSSLKNLLE 2204
Cdd:pfam12128 556 SPELLHRTDLDPEVWDGSVGGELnLYGVKLDLKridvpewaaseeELRERLDKAEEALQSAREKQAAAEEQLVQANGELE 635
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2205 EKEREkiqtKEEAKSAVEMLQTQLRELTEEIAALCDDQetwkveEQSLDSPAQEVQQLRNNIEKlkvhldidKKKQLQIL 2284
Cdd:pfam12128 636 KASRE----ETFARTALKNARLDLRRLFDEKQSEKDKK------NKALAERKDSANERLNSLEA--------QLKQLDKK 697
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2285 EKLKESEHQADFLKDTVENLERELKLSGENQEHV-----TLEAEKSKAEVEtLKATVEKMDQNLRGLQLD---LVNIRSE 2356
Cdd:pfam12128 698 HQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLallkaAIAARRSGAKAE-LKALETWYKRDLASLGVDpdvIAKLKRE 776
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2357 KEDLTKELQKEQSRVSELETLNSSFENLLREKEQEKVQMKEESKAAVEMLQTQLKELSEEVAILCVDQET-WKVEEQSLD 2435
Cdd:pfam12128 777 IRTLERKIERIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMeRKASEKQQV 856
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2436 SPLEEIQQLRNNIGKL-KVCLDADKKQQLHileKLKESEHQADFLKDTVENLERELKLSGENQEHVTLEAEKSKAEVETL 2514
Cdd:pfam12128 857 RLSENLRGLRCEMSKLaTLKEDANSEQAQG---SIGERLAQLEDLKLKRDYLSESVKKYVEHFKNVIADHSGSGLAETWE 933
|
650
....*....|....*..
gi 528980992 2515 KATVEEMDQNLRGLQLD 2531
Cdd:pfam12128 934 SLREEDHYQNDKGIRLL 950
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
2466-2901 |
1.06e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2466 LEKLKESEHQADFLKDTVENLERELKLSGENQEHVTLEAEKSKAEVETLKATVE--EMDQNLRGLQLDLVNIRSDKEDLT 2543
Cdd:COG4717 73 LKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQllPLYQELEALEAELAELPERLEELE 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2544 KELQKEQSRVSELETLNSSFENLLREKEQEKVQMKEESKAAVEMLQKELEELNEKMAALGNDQETRKVKEQSLSSQVDSL 2623
Cdd:COG4717 153 ERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQL 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2624 E--HEKAQLLQDLDDAKSNYMILQSSVNDLIQEVEDGKQKLEKKDEEISIL--------------KSQTRDQEQLVSKLS 2687
Cdd:COG4717 233 EneLEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLgllallflllarekASLGKEAEELQALPA 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2688 QMEGEQQLWKKQKADLENLMVELEQKIQVLQSKNDALQDTLEALqnssRNLEKELELTKLEKmSFVEKVNTMTVKETELQ 2767
Cdd:COG4717 313 LEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREA----EELEEELQLEELEQ-EIAALLAEAGVEDEEEL 387
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2768 KEIHAVIQKTVALKEEFSGEKNRLMEELNLMLEEvkSSKGQLKELMLENSELKKSLdcvhKDRMEEQGKMRGEIAEYQLR 2847
Cdd:COG4717 388 RAALEQAEEYQELKEELEELEEQLEELLGELEEL--LEALDEEELEEELEELEEEL----EELEEELEELREELAELEAE 461
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 528980992 2848 LQEAENKHQallLDTNKQhemEIQTYREKLTSKEECLSSQKVEIDLLKSSKEEL 2901
Cdd:COG4717 462 LEQLEEDGE---LAELLQ---ELEELKAELRELAEEWAALKLALELLEEAREEY 509
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
2045-2261 |
1.24e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.05 E-value: 1.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2045 SEHEKLAITKALEAALMEKGEVAVRLSSTQEEVHQLRKGIEKLRVRIEADEKKQLHVSEKLKESERRNDSLQDKVETLER 2124
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERAR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2125 ELQMAEENQEL--VILDAENckaeVETLKTQIELMTerlkdleldlvTIRSEKENLLKQLQEKQGQaseldtlLSSLKNL 2202
Cdd:COG3883 94 ALYRSGGSVSYldVLLGSES----FSDFLDRLSALS-----------KIADADADLLEELKADKAE-------LEAKKAE 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 528980992 2203 LEEKEREKIQTKEEAKSAVEMLQTQLRELTEEIAALCDDQETWKVEEQSLDSPAQEVQQ 2261
Cdd:COG3883 152 LEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEA 210
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1791-2238 |
1.32e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1791 ERDQKVENLLNEIKELDSKFHLLEVQLTTKIEACVALEKIVEELKKEKLDLNEKLESFSCHNQREEssggLTSNLEMVTS 1870
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEA----LEAELAELPE 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1871 KFphEGIEDDVAKVTdNWREKCLQVENELQRIQSEKDsmEHHALSAEASLEAVQTEKLYLEKDNENKQTvitcLEEGLSV 1950
Cdd:COG4717 147 RL--EELEERLEELR-ELEEELEELEAELAELQEELE--ELLEQLSLATEEELQDLAEELEELQQRLAE----LEEELEE 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1951 VTSERDQLRGELDTLSKEnQELDQMSEKMKEKIRELESHQSECLHLQEWLQSLEKDSQ---ALSLVRSELENQIEQLNKE 2027
Cdd:COG4717 218 AQEELEELEEELEQLENE-LEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTiagVLFLVLGLLALLFLLLARE 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2028 KDSLVWESESLQTKLSESEHEKLAITKALEAalmEKGEVAVRLSSTQEEVHQLRKGIEKLRVRIEADEKKQLHVSEKLKE 2107
Cdd:COG4717 297 KASLGKEAEELQALPALEELEEEELEELLAA---LGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIA 373
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2108 SERRNDSLQDKvETLERELQMAEENQELvildaencKAEVETLKTQIELMTERLKDL--ELDLVTIRSEKENLLKQLQEK 2185
Cdd:COG4717 374 ALLAEAGVEDE-EELRAALEQAEEYQEL--------KEELEELEEQLEELLGELEELleALDEEELEEELEELEEELEEL 444
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 528980992 2186 QGQASELDTLLSSLKNLLEEKEREkiQTKEEAKSAVEMLQTQLRELTEEIAAL 2238
Cdd:COG4717 445 EEELEELREELAELEAELEQLEED--GELAELLQELEELKAELRELAEEWAAL 495
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
2018-2309 |
1.41e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.56 E-value: 1.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2018 ENQIEQLNKEKDSLVWESESLQTKLSE----SEHEKLAITKALEAALMEKGEVAVRLSSTQ-----EEVHQLRKGIEKLR 2088
Cdd:PRK04863 785 EKRIEQLRAEREELAERYATLSFDVQKlqrlHQAFSRFIGSHLAVAFEADPEAELRQLNRRrveleRALADHESQEQQQR 864
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2089 VRIEADEKKQLHVSEKLKESE-RRNDSLQDKVETLERELQMAEEN---------------QELVILDAEncKAEVETLKT 2152
Cdd:PRK04863 865 SQLEQAKEGLSALNRLLPRLNlLADETLADRVEEIREQLDEAEEAkrfvqqhgnalaqlePIVSVLQSD--PEQFEQLKQ 942
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2153 QIELMTERLKDLE---LDLVTIRSEKENLlkQLQEKQGQASELDTLLSSLKNLLEEKEREKIQTKEEAKSAvemlQTQLR 2229
Cdd:PRK04863 943 DYQQAQQTQRDAKqqaFALTEVVQRRAHF--SYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQA----QAQLA 1016
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2230 ELTEEIAALcddqetwkveEQSLDSPAQEVQQLRNNIEKLKVHLDIDKKKQL-----QILEKLKESEHQADFLKDTVENL 2304
Cdd:PRK04863 1017 QYNQVLASL----------KSSYDAKRQMLQELKQELQDLGVPADSGAEERArarrdELHARLSANRSRRNQLEKQLTFC 1086
|
....*
gi 528980992 2305 ERELK 2309
Cdd:PRK04863 1087 EAEMD 1091
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
436-1090 |
1.45e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.57 E-value: 1.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 436 QAELDKVTSVKQQIEKKLEEFKQNFSKTEQALQASQTKENELRRSSEEMKRENSLLKSQSEQRARE----VCHLEEELKK 511
Cdd:TIGR00618 151 QGEFAQFLKAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTyherKQVLEKELKH 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 512 AKQCLSQSQNFAEEMKAKNTSQETMLRDLQEKINQQENSLTLEKLKLALADLEKQRDCSQDLLKKREH---------HIE 582
Cdd:TIGR00618 231 LREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHikavtqieqQAQ 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 583 QLNEKLSKTERESEALLSALELKKKEYEELKEEKTLFSRWKSENEQLLNQMESE---KESLQSKVNHLETCLKTQQIKSH 659
Cdd:TIGR00618 311 RIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVAtsiREISCQQHTLTQHIHTLQQQKTT 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 660 EYNE----RVRTLEMERENLNVEIRNL-QNVIDSKTAEAETQKRAYgelQQKAEFSDQKHEKEIENMCLKISHLTGQVED 734
Cdd:TIGR00618 391 LTQKlqslCKELDILQREQATIDTRTSaFRDLQGQLAHAKKQQELQ---QRYAELCAAAITCTAQCEKLEKIHLQESAQS 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 735 LEHKLQLLsSEIMDKDQRYQDLHAESESLRDLLKS--RDSSAMTIEPHQRSRLAFEQ-----------------QSALNN 795
Cdd:TIGR00618 468 LKEREQQL-QTKEQIHLQETRKKAVVLARLLELQEepCPLCGSCIHPNPARQDIDNPgpltrrmqrgeqtyaqlETSEED 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 796 SFANIIGEQESVPSERSRCHVATDQSPKSSSMLQNRVVSLEFSLESQKQMNSDLQKQCEELVQIKGEIEENLMKAE-QMH 874
Cdd:TIGR00618 547 VYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQpEQD 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 875 QSFVAETSQRISKLQEDTSVHQNVVAETLAALESKERELQLLNEKLETEQAETGELKKNNHLLQESLKELQFLSETLSLE 954
Cdd:TIGR00618 627 LQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLL 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 955 KKELNSIISlNKKDIEELTQENGTLKeinATLTQEKMNLLQKTESFSNCIDERDRSISELSNQYKQERLTLLQRCEETGN 1034
Cdd:TIGR00618 707 RELETHIEE-YDREFNEIENASSSLG---SDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSH 782
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 528980992 1035 AFQDLSEKYKAVQEKNSKLECLLSECTGVCEDRKNELGQLKETFAREHQAFVSQLA 1090
Cdd:TIGR00618 783 LAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLE 838
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
466-696 |
1.53e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 1.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 466 ALQASQTKENELRRSSEEMKRENSLLKSQSEQRARevchLEEELKKAKQCLSQSQNFAEEMKAKNTSQETMLRDLQEKIN 545
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKA----LLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 546 QQENSLTLEKLKLA--LADLEKQRDCSQDLLKKREHHIEQLNEKLSKTERESEALLSALELKKKEYEELKEEKTLFSRWK 623
Cdd:COG4942 94 ELRAELEAQKEELAelLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 528980992 624 SENEQLLNQMESEKESLQSKVNHLETCLKTQQIKSHEYNERVRTLEMERENLNVEIRNLQNVIDSKTAEAETQ 696
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
310-567 |
1.54e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 310 GQVNKLQELQLQLEKAKVELNEKEKVLNKNRDELVRTTSQYDQASAKCTALEQKLKKLTEDLSCQRQNAESARcSLEQKI 389
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELE-KEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 390 KEKEKEFQEELSRQQRSFQTLDQECTQMKARLTQELQQAKNTYNILQAeldkvtsVKQQIEKKLEEFKQNFSKTEQALQA 469
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKY-------LAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 470 SQTKENELRRSSEEMKRENSLLKSQSEQRAREVCHLEEELKKAKQCLSQSQNFAEEmkakntsqetmlrdLQEKINQQEN 549
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE--------------LEALIARLEA 234
|
250
....*....|....*...
gi 528980992 550 SLTLEKLKLALADLEKQR 567
Cdd:COG4942 235 EAAAAAERTPAAGFAALK 252
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
505-1148 |
1.54e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.24 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 505 LEEELKKAKQCLSQSQNFAEEMKAKNTSQETMLRDLQEKIN---QQENSLT---------LEKLKLALADLEKQRDCSQD 572
Cdd:TIGR04523 38 LEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKileQQIKDLNdklkknkdkINKLNSDLSKINSEIKNDKE 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 573 LLKKREHHIEQLNEKLSKTERESEALLSALELKKKEYEELKEEKTLFSRWKSENEQLLNQMESEKESLQS---KVNHLET 649
Cdd:TIGR04523 118 QKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKnidKIKNKLL 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 650 CLKTQQIKSHEYNERVRTLEMERENLNVEIRNLQNVIDSKTAEAETQKRAYGELQQKAEFSDQKHEKEIENMCLKISHLT 729
Cdd:TIGR04523 198 KLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELE 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 730 ---GQVEDLEHKLQLLSSEIMD-KDQRYQDLHAEsesLRDLLKSRDSSAMTIEPHQRSRLafEQQSALNNSFANIIGEQE 805
Cdd:TIGR04523 278 qnnKKIKELEKQLNQLKSEISDlNNQKEQDWNKE---LKSELKNQEKKLEEIQNQISQNN--KIISQLNEQISQLKKELT 352
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 806 SVPSERSRCHVATDQSPKSSSMLQNRVVSLEFSLESQKQMNSDLQKQCEELVQIKGEIEENLMKAEQMHQSfvaetsqrI 885
Cdd:TIGR04523 353 NSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKEL--------L 424
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 886 SKLQEDTSVHQNVVAETLAALESKERELQLLNEKLETEQAEtgelkknnhlLQESLKELQFLSETLSLEKKELNSIISLN 965
Cdd:TIGR04523 425 EKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRES----------LETQLKVLSRSINKIKQNLEQKQKELKSK 494
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 966 KKDIEELTQENGTLKEINATLTQEKMNLLQKTESFSNCIDERDRSISELSNQYKQERLTLlqrceetgnafqDLSEKYKA 1045
Cdd:TIGR04523 495 EKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFEL------------KKENLEKE 562
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1046 VQEKNSKLEcllsectgvcedrknELGQLKETFAREHQAFVSQLALAEERNQNLIVELETvQQALQSEITDIQNSSKRET 1125
Cdd:TIGR04523 563 IDEKNKEIE---------------ELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEE-KEKKISSLEKELEKAKKEN 626
|
650 660
....*....|....*....|...
gi 528980992 1126 DGLKQEIMNLKEEQNKMQQEVSA 1148
Cdd:TIGR04523 627 EKLSSIIKNIKSKKNKLKQEVKQ 649
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
2282-2440 |
1.67e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.99 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2282 QILEKLKESEHQADFLKDTVENLERELKLSGENQEHVTLEAEKSKAEVETLKATVEKMDQNLRGLQLDLVNIRSEKE--D 2359
Cdd:COG1579 14 ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEyeA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2360 LTKELQKEQSRVSELETLNSSFENLLREKEQEKVQMKEESKAAVEMLQTQLKELSEEVAILCVDQETWKVEEQSLDSPLE 2439
Cdd:COG1579 94 LQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIP 173
|
.
gi 528980992 2440 E 2440
Cdd:COG1579 174 P 174
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
2140-2395 |
1.74e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.24 E-value: 1.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2140 AENCKAEVETLKTQIELMTERLKDLELDLvtirSEKENLLKQLQEKQG---QASELDTLLSSLKNLleEKEREKIQTK-E 2215
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKEL----EEAEAALEEFRQKNGlvdLSEEAKLLLQQLSEL--ESQLAEARAElA 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2216 EAKSAVEMLQTQLRELTEEIAALCDDQEtwkveeqsldspaqeVQQLRNNIEKLKVHLDidkkkqlQILEKLKESEHQAD 2295
Cdd:COG3206 237 EAEARLAALRAQLGSGPDALPELLQSPV---------------IQQLRAQLAELEAELA-------ELSARYTPNHPDVI 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2296 FLKDTVENLERELK-LSGENQEHVTLEAEKSKAEVETLKATVEKMDQNLRGLQLDLVNIRsekedltkELQKEqsrvseL 2374
Cdd:COG3206 295 ALRAQIAALRAQLQqEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELR--------RLERE------V 360
|
250 260
....*....|....*....|.
gi 528980992 2375 ETLNSSFENLLREKEQEKVQM 2395
Cdd:COG3206 361 EVARELYESLLQRLEEARLAE 381
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
400-999 |
1.74e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.24 E-value: 1.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 400 LSRQQRSFQTLDQECTQMKARLTQELQQAKNtyniLQAELDKVTSVKQQIEKKLEEFKQNFSKTEQALQASQTKENELRR 479
Cdd:TIGR04523 28 ANKQDTEEKQLEKKLKTIKNELKNKEKELKN----LDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNS 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 480 SSEEMKRENSLLKSQSEQRAREVCHLEEELKKAKQCLSQSQNFAEEMKAKNTSQETMLRDLQEKINQQENSLTLeklkla 559
Cdd:TIGR04523 104 DLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNL------ 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 560 ladLEKQRDCSQDLLKKREHHIEQLNEKLSKTERESE---ALLSALELKKKEYEELKEEKTLFSRWKSENEQLLNQMESE 636
Cdd:TIGR04523 178 ---LEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQknkSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQ 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 637 KESLQSKVNHLETCLKTQQIKSHEYNERVRTLEMERENLNVEIRNLQNVidsktAEAETQKRAYGELQQKAEFSDQKhEK 716
Cdd:TIGR04523 255 LNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQ-----KEQDWNKELKSELKNQEKKLEEI-QN 328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 717 EIENMCLKISHLTGQVEDLEHKLQLLSS-------EIMDKDQRYQDLHAESESLRDLLKSRDSSAMTIEphQRSRLAFEQ 789
Cdd:TIGR04523 329 QISQNNKIISQLNEQISQLKKELTNSESensekqrELEEKQNEIEKLKKENQSYKQEIKNLESQINDLE--SKIQNQEKL 406
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 790 QSALNNSFANIIGEQESVPSERSRCHVATDQSPKSSSMLQNRVVSLEFSLESQKQMNSDLQKQCEELvqiKGEIEENLMK 869
Cdd:TIGR04523 407 NQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVL---SRSINKIKQN 483
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 870 AEQMHQSFVAETSQRISKLQEDTSVHQNVVAETLAALESKERELQLLNEKLETE-------------------------- 923
Cdd:TIGR04523 484 LEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKEskisdledelnkddfelkkenlekei 563
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 528980992 924 ---QAETGELKKNNHLLQESLKELQFLSETLSLEKKELNSIISLNKKDIEELTQENGTLKEINATLTQEKMNLLQKTES 999
Cdd:TIGR04523 564 dekNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNK 642
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
2321-2748 |
1.87e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 1.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2321 EAEKSKAEVETLKATVEKMDQNLRGLQLDLVNIRSEKEDLTKELQKeQSRVSELETLNSSFENLLREKEQEKVQMKE--E 2398
Cdd:COG4717 82 EAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL-LPLYQELEALEAELAELPERLEELEERLEElrE 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2399 SKAAVEMLQTQLKELSEEVAILCvdQETWKVEEQSLDSPLEEIQQLRNNIGKLKvcldadkKQQLHILEKLKESEHQADF 2478
Cdd:COG4717 161 LEEELEELEAELAELQEELEELL--EQLSLATEEELQDLAEELEELQQRLAELE-------EELEEAQEELEELEEELEQ 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2479 LKDTVENLERELKLSgenQEHVTLEAEKSKAEVETLKATVEEMDQNLRGLQLDLVNIRSDkEDLTKELQKEQSRVSELET 2558
Cdd:COG4717 232 LENELEAAALEERLK---EARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLAL-LFLLLAREKASLGKEAEEL 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2559 LNSSFENLLREKEQEKVqmKEESKAAVEMLQKELEELNEKMAALgnDQETRKVKEQSLSSQVDSLEHEKAQLLQDLDdak 2638
Cdd:COG4717 308 QALPALEELEEEELEEL--LAALGLPPDLSPEELLELLDRIEEL--QELLREAEELEEELQLEELEQEIAALLAEAG--- 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2639 snymilqssvndlIQEVEDGKQKLEKKDEEISILKSQTRDQEQLVSKLSqmEGEQQLWKKQKADLENLMVELEQKIQVLQ 2718
Cdd:COG4717 381 -------------VEDEEELRAALEQAEEYQELKEELEELEEQLEELLG--ELEELLEALDEEELEEELEELEEELEELE 445
|
410 420 430
....*....|....*....|....*....|
gi 528980992 2719 SKNDALQDTLEALQNSSRNLEKELELTKLE 2748
Cdd:COG4717 446 EELEELREELAELEAELEQLEEDGELAELL 475
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1921-2231 |
2.00e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 43.35 E-value: 2.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1921 EAVQTEKLYLEKDNENKQTVITCLEEGLSVVTSERDQLRGELDTLskeNQELDQMSEKMKEKIRELESHQSECLHLQEWL 2000
Cdd:COG4372 6 EKVGKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQL---REELEQAREELEQLEEELEQARSELEQLEEEL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2001 QSLEKDSQALSLVRSELENQIEQLNKEKDSLVWESESLQTKLSESEHEKLAITKALEAALMEKGEVAVRLSSTQEEVHQL 2080
Cdd:COG4372 83 EELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2081 RKGIEKLRVRIEADEKKQLHVSEKLKESERRNDSLQDKVETLERELQMAEENQELVILDAENCKAEVETLKTQIELMTER 2160
Cdd:COG4372 163 QEELAALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDAL 242
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 528980992 2161 LKDLELDLVTIRSEKENLLKQLQEKQGQASELDTLLSSLKNLLEEKEREKIQTKEEAKSAVEMLQTQLREL 2231
Cdd:COG4372 243 ELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGAL 313
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
299-514 |
2.01e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 2.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 299 LRLQGQEKEMKGQVNKLQELQLQLEKAKVELNEKEKVLNKNRDELVRTTSQYDQASAKCTALEQKLKKLTEDLSCQRQNA 378
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 379 ESARCSLEQKIKEKEKEFQEELSRQQRSFQTL-----DQECTQMKARLTQELQQA-KNTYNILQAELDKVTSVKQQIEKK 452
Cdd:COG4942 93 AELRAELEAQKEELAELLRALYRLGRQPPLALllspeDFLDAVRRLQYLKYLAPArREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 528980992 453 LEEFKQNFSKTEQALQASQTKENELRRSSEEMKRENSLLKSQSEQRAREVCHLEEELKKAKQ 514
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1934-2211 |
2.22e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 43.76 E-value: 2.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1934 NENKQTVITCLEEgLSVVtsERDQLRGELDTLSKEnqELDQMSEKMKEKIRELESHQSECLHLQEWL-----QSLEKDSQ 2008
Cdd:PRK05771 15 KSYKDEVLEALHE-LGVV--HIEDLKEELSNERLR--KLRSLLTKLSEALDKLRSYLPKLNPLREEKkkvsvKSLEELIK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2009 ALSLVRSELENQIEQLNKEKdslvwesESLQTKLSESEHEKLAIT--KALE---AALMEKGEVAVRLSSTQEEVHQLRKG 2083
Cdd:PRK05771 90 DVEEELEKIEKEIKELEEEI-------SELENEIKELEQEIERLEpwGNFDldlSLLLGFKYVSVFVGTVPEDKLEELKL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2084 IEKLRVRIEADEKKQLH----VSEKlkeserrndSLQDKVETLERELqmaeENQELVILDAENCKAEVETLKTQIElmte 2159
Cdd:PRK05771 163 ESDVENVEYISTDKGYVyvvvVVLK---------ELSDEVEEELKKL----GFERLELEEEGTPSELIREIKEELE---- 225
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 528980992 2160 rlkdleldlvTIRSEKENLLKQLQEKqgqASELDTLLSSLKNLLE-EKEREKI 2211
Cdd:PRK05771 226 ----------EIEKERESLLEELKEL---AKKYLEELLALYEYLEiELERAEA 265
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
2562-3045 |
2.24e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.86 E-value: 2.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2562 SFENLLREKEQEKVQMKEESKAavemLQKELEELNEKMAALGNDQETRKVKEQSLSSQVDSLEHEKAQLLQDLDDAKSNY 2641
Cdd:TIGR04523 23 GYKNIANKQDTEEKQLEKKLKT----IKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKI 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2642 MILQSSVNDLIQEVEDGKQKLEKKDEEISILKSQTRDQEQLV-----------SKLSQMEGEQQLWKKQKADLENLMVEL 2710
Cdd:TIGR04523 99 NKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIdkflteikkkeKELEKLNNKYNDLKKQKEELENELNLL 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2711 EQKIQVLQSKNDALQDTLEALQNSSRNLEK--------ELELTKLEKM--SFVEKVNTMTVKETELQKEIHAVIQKTVAL 2780
Cdd:TIGR04523 179 EKEKLNIQKNIDKIKNKLLKLELLLSNLKKkiqknkslESQISELKKQnnQLKDNIEKKQQEINEKTTEISNTQTQLNQL 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2781 KEEFSGEKNRLME---ELNLMLEEVKSSKGQLKELMLENSELKKSLDCV-HKDRMEEQGKMRGEIAEYQLRLQEAENKHQ 2856
Cdd:TIGR04523 259 KDEQNKIKKQLSEkqkELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDwNKELKSELKNQEKKLEEIQNQISQNNKIIS 338
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2857 AL-------------LLDTNKQHEMEIQTYREKLTSKEECLSSQKVEIDLLKSSKEELNNSLKATTEILEELKKTKMENL 2923
Cdd:TIGR04523 339 QLneqisqlkkeltnSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQ 418
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2924 KHADKLKKENDRAQSKIKLLVKSCKQLEEEKVMLQKELSHLEAAQEKQRAdtvvdaNVDELITEMKELKETLEEKTKEAD 3003
Cdd:TIGR04523 419 QEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLET------QLKVLSRSINKIKQNLEQKQKELK 492
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 528980992 3004 EYLDKYCSLLISHEKLEKAKEMLETQVARLSSQQSKLNLRRS 3045
Cdd:TIGR04523 493 SKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKK 534
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
2004-2688 |
2.54e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 43.66 E-value: 2.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2004 EKDSQALSLVRSELENQIEQLNKEKDSLVWESESLQTKL---------SESEHEKLAITKALEAALMEKGEVAVRLSSTQ 2074
Cdd:pfam10174 126 ERQAKELFLLRKTLEEMELRIETQKQTLGARDESIKKLLemlqskglpKKSGEEDWERTRRIAEAEMQLGHLEVLLDQKE 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2075 EEVHQLRKGIE-KLRVRIEADEKKQLHVSEKLKESerRNDSLQDKVETLERELQMAEENQELVILDAENCKAEVETLKTQ 2153
Cdd:pfam10174 206 KENIHLREELHrRNQLQPDPAKTKALQTVIEMKDT--KISSLERNIRDLEDEVQMLKTNGLLHTEDREEEIKQMEVYKSH 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2154 IELMTERLKDLELDLVTIRSEKENLLKQLQEKQGQASELDTLLSSLKNLLEEKEREK--IQTKEEA-KSAVEMLQTQLRE 2230
Cdd:pfam10174 284 SKFMKNKIDQLKQELSKKESELLALQTKLETLTNQNSDCKQHIEVLKESLTAKEQRAaiLQTEVDAlRLRLEEKESFLNK 363
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2231 LTEEIAALCDDQETWkveeqsldspAQEVQQLRNNIEKLKVHLDIDKKKQLQILEKLKESEHQADFLKDTVENLERElkL 2310
Cdd:pfam10174 364 KTKQLQDLTEEKSTL----------AGEIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKERVKSLQTD--S 431
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2311 SGENQEHVTLEAEKSKAE--VETLKATVEKMDQNLrglqldlvniRSEKEDLTKELQKEQSRVSELETlnssfenLLREK 2388
Cdd:pfam10174 432 SNTDTALTTLEEALSEKEriIERLKEQREREDRER----------LEELESLKKENKDLKEKVSALQP-------ELTEK 494
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2389 EQEKVQMKEE-SKAAVEMLQTQLKELSEEVAIlcvdqetwkveEQSLDSPLEEIQQLRnnigklkvcldadKKQQLHILE 2467
Cdd:pfam10174 495 ESSLIDLKEHaSSLASSGLKKDSKLKSLEIAV-----------EQKKEECSKLENQLK-------------KAHNAEEAV 550
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2468 KLKESehqadfLKDTVENLERELKLSGEnqehvtlEAEKSKAEVETLKATVEEMDqnlrglqldlvNIRSDKEDLTKELQ 2547
Cdd:pfam10174 551 RTNPE------INDRIRLLEQEVARYKE-------ESGKAQAEVERLLGILREVE-----------NEKNDKDKKIAELE 606
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2548 KEQSRVSELETLNSSFENLLREKEQEKVQM------KEESKAAVEMLQKELEELNEKMAALGNDQETRKVK----EQSLS 2617
Cdd:pfam10174 607 SLTLRQMKEQNKKVANIKHGQQEMKKKGAQlleearRREDNLADNSQQLQLEELMGALEKTRQELDATKARlsstQQSLA 686
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 528980992 2618 SQ---VDSLEHEKAQLLQDLDDAKSNYMILQSSVNDL-IQEVEDGKQKLEKKDEEISILKsqtRDQEQLVSKLSQ 2688
Cdd:pfam10174 687 EKdghLTNLRAERRKQLEEILEMKQEALLAAISEKDAnIALLELSSSKKKKTQEEVMALK---REKDRLVHQLKQ 758
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
281-703 |
2.71e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.49 E-value: 2.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 281 DQLKAQNQELRSKMSELELRLQGQEKEMKGQVNKLQELQLQLEKAKVELNEKEKVLNKNRDELVRTTSQYDQASAKCTAL 360
Cdd:PRK02224 352 DDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAEL 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 361 EQKLKKLTEDLSCQRQNAESARCSLEQKIKEKEKEFQEElsrqqrsfqtldQECTQMKARLTQELQQAKNTYNILQAELD 440
Cdd:PRK02224 432 EATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETI------------EEDRERVEELEAELEDLEEEVEEVEERLE 499
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 441 KVTSVKQQiEKKLEEFKQNFSKTEQALQASQTKENELRRSSEEMKRENSLLKSQSEQRAREVCHLEEELKKAKQCLSQSQ 520
Cdd:PRK02224 500 RAEDLVEA-EDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELN 578
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 521 NFAEEMKAKNTSQETmLRDLQEKInqQENSLTLEKLKLALADLEKQRDCSQDLLKKREHHIEQLNEKLSKtERESEAlls 600
Cdd:PRK02224 579 SKLAELKERIESLER-IRTLLAAI--ADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDE-ARIEEA--- 651
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 601 alelkkkeyeelKEEKTLFSRWKSENEQLLNQMESEKESLQSKVNHLETCLktqqiksheynERVRTLEMERENLNVEIR 680
Cdd:PRK02224 652 ------------REDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENEL-----------EELEELRERREALENRVE 708
|
410 420
....*....|....*....|...
gi 528980992 681 NLQNVIDsktaEAETQKRAYGEL 703
Cdd:PRK02224 709 ALEALYD----EAEELESMYGDL 727
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
1935-3035 |
2.81e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 43.89 E-value: 2.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1935 ENKQTVITCLEEGLS-VVTSERDQLRGELDTLSKENQ--------ELDQMSEKMKEKIRELESHQSECLHLQewLQSLEK 2005
Cdd:TIGR01612 652 KNKDKIYSTIKSELSkIYEDDIDALYNELSSIVKENAidntedkaKLDDLKSKIDKEYDKIQNMETATVELH--LSNIEN 729
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2006 DSQALSLVRSELENQIE-QLNKEKDSLVWESESLQTKLSES------EHEKLAITKALEAALMEKGEVAVRLSSTQEEvh 2078
Cdd:TIGR01612 730 KKNELLDIIVEIKKHIHgEINKDLNKILEDFKNKEKELSNKindyakEKDELNKYKSKISEIKNHYNDQINIDNIKDE-- 807
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2079 QLRKGIEKLRVRIEADEKKQLHVSEKLKESERRNDSLQDKVETLerelqMAEENqelvildaeNCKAEVETLKTQIELMT 2158
Cdd:TIGR01612 808 DAKQNYDKSKEYIKTISIKEDEIFKIINEMKFMKDDFLNKVDKF-----INFEN---------NCKEKIDSEHEQFAELT 873
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2159 ERLKDLELDlvtirsekenllKQLQEKQGQASELDTLLSSLKNLLEEkEREKIQTKEEAKSAVEMLQTQlrelTEEIAAL 2238
Cdd:TIGR01612 874 NKIKAEISD------------DKLNDYEKKFNDSKSLINEINKSIEE-EYQNINTLKKVDEYIKICENT----KESIEKF 936
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2239 CDDQETWKveeQSLDSPAQEVQQlRNNIEK-LKVHLD---IDKKKQLQILEK---LKESEHQADFLKDTVENLERELKLS 2311
Cdd:TIGR01612 937 HNKQNILK---EILNKNIDTIKE-SNLIEKsYKDKFDntlIDKINELDKAFKdasLNDYEAKNNELIKYFNDLKANLGKN 1012
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2312 GENQEHVTLEaEKSKAeVETLKATVEKMDQNLRGLQLdlvNIRSEKEDLTKELQKEQSRvsELETLNSsfeNLLREkeqe 2391
Cdd:TIGR01612 1013 KENMLYHQFD-EKEKA-TNDIEQKIEDANKNIPNIEI---AIHTSIYNIIDEIEKEIGK--NIELLNK---EILEE---- 1078
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2392 kvqmkeeskaaVEMLQTQLKELSEEVAILCVDQetwKVEEQSLDSPlEEIQQLRNNIGKLKVCLDADKKQqlhILEKLKE 2471
Cdd:TIGR01612 1079 -----------AEINITNFNEIKEKLKHYNFDD---FGKEENIKYA-DEINKIKDDIKNLDQKIDHHIKA---LEEIKKK 1140
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2472 SEHQADFLKDTVENLER--ELKLSGENQEHVTLEAEKSKAEVETLKATVEEMDQNLRGLQldlvnirsdkedltkELQKE 2549
Cdd:TIGR01612 1141 SENYIDEIKAQINDLEDvaDKAISNDDPEEIEKKIENIVTKIDKKKNIYDEIKKLLNEIA---------------EIEKD 1205
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2550 QSRVSELETLNSSF----ENLLREKEQEKVQMKEESKAAVEMLQKELEELNEKMAALGNDQETRKVKEQSLssQVDSLEH 2625
Cdd:TIGR01612 1206 KTSLEEVKGINLSYgknlGKLFLEKIDEEKKKSEHMIKAMEAYIEDLDEIKEKSPEIENEMGIEMDIKAEM--ETFNISH 1283
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2626 ekaqllqdlDDAKSNYMILQSSvNDLIQEVEDGKQKLEKKDEEISILKSQTRDQEQLVSKLSQMEGEQQLWKKQKADLEN 2705
Cdd:TIGR01612 1284 ---------DDDKDHHIISKKH-DENISDIREKSLKIIEDFSEESDINDIKKELQKNLLDAQKHNSDINLYLNEIANIYN 1353
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2706 LMveleqKIQVLQSKNDALQDTLEALQNSSRNLEKELELTKLEKMSFVEKVNTMTVKE----TELQKEIHAVIQKTVALK 2781
Cdd:TIGR01612 1354 IL-----KLNKIKKIIDEVKEYTKEIEENNKNIKDELDKSEKLIKKIKDDINLEECKSkiesTLDDKDIDECIKKIKELK 1428
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2782 EEFSGEKNRL----------MEELNLMLEEVKSSKGQLKELM------------LENSELKKSLDCVHK-----DRMEEQ 2834
Cdd:TIGR01612 1429 NHILSEESNIdtyfknadenNENVLLLFKNIEMADNKSQHILkikkdnatndhdFNINELKEHIDKSKGckdeaDKNAKA 1508
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2835 GKMRGEIAE-YQLRLQEAENKHQALLLDTN---KQHEMEIQTYREKLTSKEECLSSQKVEIDLLKSSKEEL--------- 2901
Cdd:TIGR01612 1509 IEKNKELFEqYKKDVTELLNKYSALAIKNKfakTKKDSEIIIKEIKDAHKKFILEAEKSEQKIKEIKKEKFrieddaakn 1588
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2902 NNSLKATTEILEELKKTKMENLKHADKLKKENDRAQSKIKLLVK-SCKQLEEEKVMLQKELSHLEAAQEKQRADTVVDAN 2980
Cdd:TIGR01612 1589 DKSNKAAIDIQLSLENFENKFLKISDIKKKINDCLKETESIEKKiSSFSIDSQDTELKENGDNLNSLQEFLESLKDQKKN 1668
|
1130 1140 1150 1160 1170 1180
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 528980992 2981 VDELITEMKELKETLEEKTKEADEYLDKYCSLLI---------SHEKLEKAKEMLETQVARLSS 3035
Cdd:TIGR01612 1669 IEDKKKELDELDSEIEKIEIDVDQHKKNYEIGIIekikeiaiaNKEEIESIKELIEPTIENLIS 1732
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
843-1118 |
2.86e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.39 E-value: 2.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 843 KQMNSDLQKQCEELVQIKGEIEENLMKAEQMHQSfVAETSQRISKLQEDTSVHQNVVAETLAALESKERELQLLNEKLET 922
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAE-LEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 923 EQAETGELKKNNHLLQESLKELQFLSETLSLEKKELNsiislnkkdiEELTQENGTLKEINATLTQEKMNLLQKTESFSN 1002
Cdd:COG1196 314 LEERLEELEEELAELEEELEELEEELEELEEELEEAE----------EELEEAEAELAEAEEALLEAEAELAEAEEELEE 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1003 CIDERDRSISELSNQyKQERLTLLQRCEETGNAFQDLSEKYKAVQEKNSKLECLLSECTGVCEDRKNELGQLKETFAREH 1082
Cdd:COG1196 384 LAEELLEALRAAAEL-AAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462
|
250 260 270
....*....|....*....|....*....|....*.
gi 528980992 1083 QAFVSQLALAEERNQNLIVELETVQQALQSEITDIQ 1118
Cdd:COG1196 463 ELLAELLEEAALLEAALAELLEELAEAAARLLLLLE 498
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1968-2544 |
3.08e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 43.35 E-value: 3.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1968 ENQELDQMSEKMKEKIRELESHQSECLHLQEWLQSLEKDSQalslvrsELENQIEQLNKEKDSLVWESESLQTKLSESEH 2047
Cdd:PRK01156 160 EINSLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELE-------NIKKQIADDEKSHSITLKEIERLSIEYNNAMD 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2048 EKLAITKALEaalmekgevavRLSSTQEEVHQLRKGIEKlrvrIEADEKKQLHVSEKLKESERRNDSLQDKVETLERELQ 2127
Cdd:PRK01156 233 DYNNLKSALN-----------ELSSLEDMKNRYESEIKT----AESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYI 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2128 MAEENqelVILDAENCKAEVETLKTQIELMTERLKDLEL------DLVTIRSEKENLLKQLQEKQGQASELDTLLSSLKN 2201
Cdd:PRK01156 298 NDYFK---YKNDIENKKQILSNIDAEINKYHAIIKKLSVlqkdynDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIES 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2202 LLEEKEREKIQTKEEAKSAVEMLQTQ------LRELTEEIAALCDDQETwKVE--EQSLDSPAQEVQQLRNNIEKLKVH- 2272
Cdd:PRK01156 375 LKKKIEEYSKNIERMSAFISEILKIQeidpdaIKKELNEINVKLQDISS-KVSslNQRIRALRENLDELSRNMEMLNGQs 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2273 ------LDIDKKKQLQILEKLKEsehQADFLKDTVENLERELKLSGENQEH-VTLEAEKSKAEVETLKATVEKMDQNLRG 2345
Cdd:PRK01156 454 vcpvcgTTLGEEKSNHIINHYNE---KKSRLEEKIREIEIEVKDIDEKIVDlKKRKEYLESEEINKSINEYNKIESARAD 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2346 LQLDLVNIRSEKEDLTK-ELQKEQSRVSELETLNSSFENLLREKEQEKVQMKEESKAAVEMLQTQLKELSEEVAILCVDQ 2424
Cdd:PRK01156 531 LEDIKIKINELKDKHDKyEEIKNRYKSLKLEDLDSKRTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGF 610
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2425 ETwkvEEQSLDSPLEEIQQLRNNIGKLKVCLDADKKQQLHILEK---LKESEHQADFLKDTVENLERELKLSGENQEHVT 2501
Cdd:PRK01156 611 PD---DKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKidnYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSR 687
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 528980992 2502 LEAEKSKAEVETLKATVEEMDQNLRGLQLDLVNIRSDKEDLTK 2544
Cdd:PRK01156 688 KALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKK 730
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2318-2584 |
3.24e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 3.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2318 VTLEAEKSKAEVETLKATVEKMDQNLRGLQLDLVNIRSEKEDLTKELQKEQSRVSELETLNSSFENLLREKEQEKVQMKE 2397
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2398 ESKAAVEMLQTQLKELSEEVAILcvdqetwkveeqsldspleeiqQLRNNIGKLKVCLDADKKQQLhiLEKLKESEHQAD 2477
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRAL----------------------YRLGRQPPLALLLSPEDFLDA--VRRLQYLKYLAP 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2478 FLKDTVENLERELKlsgenqehvtlEAEKSKAEVETLKATVEEMDQNLRGLQLDLVNIRSDKEDLTKELQKE----QSRV 2553
Cdd:COG4942 147 ARREQAEELRADLA-----------ELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKElaelAAEL 215
|
250 260 270
....*....|....*....|....*....|.
gi 528980992 2554 SELETLNSSFENLLREKEQEKVQMKEESKAA 2584
Cdd:COG4942 216 AELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2406-2617 |
3.24e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 3.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2406 LQTQLKELSEEVAILcvdQETWKVEEQSLDSPLEEIQQLRNNIGKLKVCLDADKKQQLHILEKLKESEHQADFLKDTVEN 2485
Cdd:COG4942 25 AEAELEQLQQEIAEL---EKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2486 LERELK------------------LSGENQEHVTLEAEKSKAEVETLKATVEEMDQNLRGLQLDLVNIRSDKEDLTKELQ 2547
Cdd:COG4942 102 QKEELAellralyrlgrqpplallLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLA 181
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2548 KEQSRVSELETLNSSFENLLREKEQEKvqmkEESKAAVEMLQKELEELNEKMAALGNDQETRKVKEQSLS 2617
Cdd:COG4942 182 ELEEERAALEALKAERQKLLARLEKEL----AELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
281-990 |
3.28e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.17 E-value: 3.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 281 DQLKAQNQELRSKMSELELRLQGQEKEMKGQVNKLQELQLQLEKAKVELNE---------KEKVLNKNRDELVRTTSQYD 351
Cdd:pfam05483 88 EKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEeiqenkdliKENNATRHLCNLLKETCARS 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 352 QASAKCTALEQK------------LKKLTEDLSCQRQNAESARCSLEQKIKEKEKEFQEELSRQQRSFQTLDQECTQMKA 419
Cdd:pfam05483 168 AEKTKKYEYEREetrqvymdlnnnIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLI 247
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 420 RLTQELQQAKNTYNILQAELDKVTSVKQQIEKKLEEFKQNFSKTEQALQASQTKENELRRSSEEMKRENSLLKSQSEQRA 499
Cdd:pfam05483 248 QITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTIC 327
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 500 REVCHLEEELKKAKQCLSQSQNFAEEMKAKNTSQETMLRDLQEKINQQENSLTLEKLKlaladlekqrdcsqdlLKKREH 579
Cdd:pfam05483 328 QLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITME----------------LQKKSS 391
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 580 HIEQLNEKLSKTERESEALLSALELKKKEYEELKEEKTLFSRWKSENEQLLNQMESEkeslQSKVNHLETCLKTQQIKSH 659
Cdd:pfam05483 392 ELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAR----EKEIHDLEIQLTAIKTSEE 467
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 660 EYNERVRTLEMEREnlNVEIRNLQNVIDSKTAEAETQKRAYGELQQKAEFsdQKHEKEIENMCLKISHLTGQVEDLEHKL 739
Cdd:pfam05483 468 HYLKEVEDLKTELE--KEKLKNIELTAHCDKLLLENKELTQEASDMTLEL--KKHQEDIINCKKQEERMLKQIENLEEKE 543
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 740 QLLSSEIMDKDQRYQDLHAESESLRDLLK--SRDSSAMTIEPHQRSRLAFEQQSALNNSFANIIGEQESVPSERSRCHVA 817
Cdd:pfam05483 544 MNLRDELESVREEFIQKGDEVKCKLDKSEenARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKK 623
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 818 TDQSPKSSSMLQNRVVSLEFSLESQKQMNSDLQKQCEELVQIKGEIEENLMKAEQMHQSFVAETsqriSKLQEDTSVH-Q 896
Cdd:pfam05483 624 GSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEA----VKLQKEIDKRcQ 699
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 897 NVVAETLAALESKERELQLLNEKLETEQAetgeLKKNNHLLQESLKELqfLSETLSLEKKELNSIISLNKKDIEELTQEN 976
Cdd:pfam05483 700 HKIAEMVALMEKHKHQYDKIIEERDSELG----LYKNKEQEQSSAKAA--LEIELSNIKAELLSLKKQLEIEKEEKEKLK 773
|
730
....*....|....
gi 528980992 977 GTLKEINATLTQEK 990
Cdd:pfam05483 774 MEAKENTAILKDKK 787
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
19-552 |
3.45e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.18 E-value: 3.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 19 KIQELEGQLDKLKKERQ--------QRQFQLETLEAALQKQKQKVENEKTEGANLKRENQSLMEICENLEKTKQKI-SHE 89
Cdd:pfam15921 239 RIFPVEDQLEALKSESQnkielllqQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMyMRQ 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 90 LQVKESQVNFQEGQLNSSKK----QIEKLEQELKRCKSEL-ERSQQAAQSADVSLNSCLTPQKIFATPLTPSQYYSGSKY 164
Cdd:pfam15921 319 LSDLESTVSQLRSELREAKRmyedKIEELEKQLVLANSELtEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKE 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 165 ED----------------LKEKYNKEVEERKRLEAEVKALQAKKASQTipqstmnHRDIARHQASSSVFSWQQEKTPSRL 228
Cdd:pfam15921 399 QNkrlwdrdtgnsitidhLRRELDDRNMEVQRLEALLKAMKSECQGQM-------ERQMAAIQGKNESLEKVSSLTAQLE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 229 SSNTLKTPVRRDFSASHF---SGEQEVTPSRSTLQIGKTdanssfcdnssnshlldQLKAQNQELRSKMSELELRLQgQE 305
Cdd:pfam15921 472 STKEMLRKVVEELTAKKMtleSSERTVSDLTASLQEKER-----------------AIEATNAEITKLRSRVDLKLQ-EL 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 306 KEMKGQVNKLQELQLQLEKAKVELNEKEKVLNKNRDELVRTTSQYDQASAKCTALEQKLKKLTEDLSCQRQNAESARCSL 385
Cdd:pfam15921 534 QHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILK 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 386 EQKikekekefqeelsrqqrsfqtlDQECTQMKARLTQELQQAKNTYNILQAELDKVTSVKQQIEKKLEEFKQNFSKTEQ 465
Cdd:pfam15921 614 DKK----------------------DAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNS 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 466 ALQASQTKENELRRSSEEMKRENSLLKSQSEQRAREVCHLEEELKKAKQCLSQSQNFAEEMKAKNTSQETMLRDLQEKIN 545
Cdd:pfam15921 672 LSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQ 751
|
....*..
gi 528980992 546 QQENSLT 552
Cdd:pfam15921 752 FLEEAMT 758
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
2467-2668 |
3.50e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.89 E-value: 3.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2467 EKLKESEHQADFLKDTVENLERELKLSGENQEHVTLEAEKSKAEVETLKATVEEMDQNLRGLQLDLvnirsdkEDLTKEL 2546
Cdd:COG3883 23 KELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREEL-------GERARAL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2547 QKEQSRVSELETL--NSSFENLLREKEQEKvQMKEESKAAVEMLQKELEELNEKMAALGNDQETRKVKEQSLSSQVDSLE 2624
Cdd:COG3883 96 YRSGGSVSYLDVLlgSESFSDFLDRLSALS-KIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELE 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 528980992 2625 HEKAQLLQDLDDAKSNYMILQSSVNDLIQEVEDGKQKLEKKDEE 2668
Cdd:COG3883 175 AQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAA 218
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
2066-2184 |
3.64e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 43.15 E-value: 3.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2066 VAVRLSSTQEEVHQLRKGIEKLRVRIEADEKkqlhvsEKLKESERRNDSLQDKVETLERELQMAEENQElvildAENCK- 2144
Cdd:COG0542 402 VRMEIDSKPEELDELERRLEQLEIEKEALKK------EQDEASFERLAELRDELAELEEELEALKARWE-----AEKELi 470
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 528980992 2145 AEVETLKTQIELMTERLKDLELDLVTIRSEKENLLKQLQE 2184
Cdd:COG0542 471 EEIQELKEELEQRYGKIPELEKELAELEEELAELAPLLRE 510
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
2146-2262 |
3.70e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 42.65 E-value: 3.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2146 EVETLKTQIELMTERL-------KDLELDLVTIR-------SEKENLLKQLQEKQGQASELDTLLSSLKNLLEEKEreki 2211
Cdd:PRK09039 54 ALDRLNSQIAELADLLslerqgnQDLQDSVANLRaslsaaeAERSRLQALLAELAGAGAAAEGRAGELAQELDSEK---- 129
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 528980992 2212 QTKEEAKSAVEMLQTQLRELTEEIAALCD--------DQETwKVEEQSLDSP-----AQEVQQL 2262
Cdd:PRK09039 130 QVSARALAQVELLNQQIAALRRQLAALEAaldasekrDRES-QAKIADLGRRlnvalAQRVQEL 192
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
2656-2748 |
3.94e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 43.02 E-value: 3.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2656 EDGKQKLEKKDEEISILKSQTRDQ----EQLVSKLSQMEGEQQLWKKQKADLENLMVELEQKIQVLQSKNDAL-QDTLEA 2730
Cdd:PRK11448 138 EDPENLLHALQQEVLTLKQQLELQarekAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETsQERKQK 217
|
90
....*....|....*...
gi 528980992 2731 LQNSSRNLEKELELTKLE 2748
Cdd:PRK11448 218 RKEITDQAAKRLELSEEE 235
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1734-2641 |
4.08e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.11 E-value: 4.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1734 VEDPAQGCSGCISELSLSGPNASVPRDFLENQVTIQSLELKVKETSNENLRLLHGIEERDQKVENLLNEIKELDSKFhll 1813
Cdd:TIGR00606 195 RQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEI--- 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1814 evqlttkieacVALEKIVEELKKEKLDLNEKLESfschnqreessggltsnlemvtskfPHEGIEDDVAKVTDNWREKCL 1893
Cdd:TIGR00606 272 -----------KALKSRKKQMEKDNSELELKMEK-------------------------VFQGTDEQLNDLYHNHQRTVR 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1894 QVENELQRIQSE--KDSMEHHALSAEASLEAVQTEKLYLEKDNENKQTVITCLEEglsvvtsERDQLRGELDTLSKENQE 1971
Cdd:TIGR00606 316 EKERELVDCQREleKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLI-------QSLATRLELDGFERGPFS 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1972 LDQMSEKMKEKIRELESHQSECLHLQEWLQSLEKDSQ-ALSLVRSELENQIEQLNKEKDSLVWESESLQTKLSESEHEKL 2050
Cdd:TIGR00606 389 ERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQeQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEG 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2051 AITKALEAalmekgEVAVRLSSTQEEVHQLRKGIEKLRVRIEADEKKQLHVSEKLKESERRNDSLQDKVETLERELQMAE 2130
Cdd:TIGR00606 469 SSDRILEL------DQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTK 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2131 E---------------NQELVIL-----DAENCKAEVETLKTQIELMTERLKDLELDLVTIRSEKENLLKQLQEKQGQAS 2190
Cdd:TIGR00606 543 DkmdkdeqirkiksrhSDELTSLlgyfpNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLS 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2191 EL-DTLLSSLKNLLEEKEREKIQTK-EEAKSAVEMLQTQLRELTEEIAALCDDQETWKVEEQSLDSPAQEVQQLRNNIEK 2268
Cdd:TIGR00606 623 SYeDKLFDVCGSQDEESDLERLKEEiEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQS 702
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2269 lKVHLDIDKKKQLQILEKLKESEHQ-----ADFLKDTVENLERELKLSGENQEHVTLEAEKSKAEV---ETLKATVEKMD 2340
Cdd:TIGR00606 703 -KLRLAPDKLKSTESELKKKEKRRDemlglAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIeeqETLLGTIMPEE 781
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2341 QNLRGLQLDLVNIRSEKEDLTKELQKEQSRVSELET--LNSSFENLLREKEQEKVQMK-------------EESKAAVEM 2405
Cdd:TIGR00606 782 ESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGsdLDRTVQQVNQEKQEKQHELDtvvskielnrkliQDQQEQIQH 861
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2406 LQTQLKEL-SEEVAILCVDQETWKVEEQSLDSPLE------EIQQLRNNIGKLKVCLDADKKQQLHILEKLKESEHQA-- 2476
Cdd:TIGR00606 862 LKSKTNELkSEKLQIGTNLQRRQQFEEQLVELSTEvqslirEIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAqd 941
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2477 --DFLKDTVENLERELK-LSGENQEHVTLEAEKSKAEVETLKATVEEMDQNLRGLQLDLVNIRSDKEDltkelQKEQSRV 2553
Cdd:TIGR00606 942 kvNDIKEKVKNIHGYMKdIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDT-----QKIQERW 1016
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2554 SELETLNSSFENLLREKEQEKVQ-MKEESKAAVEMLQKELEELNEKMAALGNDQETRKVKEQSLSSQVDSLEHEKAQllQ 2632
Cdd:TIGR00606 1017 LQDNLTLRKRENELKEVEEELKQhLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE--P 1094
|
....*....
gi 528980992 2633 DLDDAKSNY 2641
Cdd:TIGR00606 1095 QFRDAEEKY 1103
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
299-746 |
4.15e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 43.14 E-value: 4.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 299 LRLQGQEKEMKGQVNKLQELQLQLEKAKVeLNEKEKVLNKNRDE-----LVRT--------TSQYDQASAKCTALEQKLK 365
Cdd:COG5022 803 LSLLGSRKEYRSYLACIIKLQKTIKREKK-LRETEEVEFSLKAEvliqkFGRSlkakkrfsLLKKETIYLQSAQRVELAE 881
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 366 KLTEDLSCQRQNAESarcsleqkIKEKEKEFQEELSRQQRSFQTLDQECTQMKARLTQELQQAKNTYNILQAELDKVTSV 445
Cdd:COG5022 882 RQLQELKIDVKSISS--------LKLVNLELESEIIELKKSLSSDLIENLEFKTELIARLKKLLNNIDLEEGPSIEYVKL 953
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 446 KQQIekKLEEFKQNFSKTEQALQASQTKENELRR----SSEEMKRENSLLKSQSEQRARevchLEEELKKAKQCLSQSQN 521
Cdd:COG5022 954 PELN--KLHEVESKLKETSEEYEDLLKKSTILVRegnkANSELKNFKKELAELSKQYGA----LQESTKQLKELPVEVAE 1027
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 522 FAEEMKAKNTSQETMLRdlQEKINQQENSLTLEKLKLaladleKQRDCSQDLLKKREHHIEQLNEKLSKTERESEALLSA 601
Cdd:COG5022 1028 LQSASKIISSESTELSI--LKPLQKLKGLLLLENNQL------QARYKALKLRRENSLLDDKQLYQLESTENLLKTINVK 1099
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 602 LELKKKEYEELKEEKTLFSRWKSENEQLLNQMEsekESLQSKVNhletclktqqiksheynervrTLEMERENLNVEIRN 681
Cdd:COG5022 1100 DLEVTNRNLVKPANVLQFIVAQMIKLNLLQEIS---KFLSQLVN---------------------TLEPVFQKLSVLQLE 1155
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 528980992 682 LQNVIDSKTAEAETQKRAYGELQQKAEFSDQKHEkeienMCLKISHltGQVEDLEHKLQLLSSEI 746
Cdd:COG5022 1156 LDGLFWEANLEALPSPPPFAALSEKRLYQSALYD-----EKSKLSS--SEVNDLKNELIALFSKI 1213
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
662-929 |
4.38e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 4.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 662 NERVRTLEMERENLNVEIRNLQNVIDSKTAEAETQKRAYGELQQKaefsdqkhekeienmclkISHLTGQVEDLEHKLQL 741
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERR------------------IAALARRIRALEQELAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 742 LSSEIMDKDQRYQDLHAESESLRDLLKSRDSSAMTIEPHQRSRLAFeqqsalnnsfaniigeqesvpsersrchvatdqS 821
Cdd:COG4942 81 LEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLL---------------------------------S 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 822 PKSSSMLQNRVVSLEFSLESQKQMNSDLQKQCEELVQIKGEIEENLMKAEQMhqsfVAETSQRISKLQEDTSVHQNVVAE 901
Cdd:COG4942 128 PEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL----LAELEEERAALEALKAERQKLLAR 203
|
250 260 270
....*....|....*....|....*....|....*...
gi 528980992 902 ----------TLAALESKERELQLLNEKLETEQAETGE 929
Cdd:COG4942 204 lekelaelaaELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1972-2210 |
4.45e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 42.69 E-value: 4.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1972 LDQMSEKMKEKIRELESHQSECLHLQEWLQS-------LEKDSQALSLVR-SELENQIEQLNKEKDSLVWESESLQTKLS 2043
Cdd:PHA02562 165 LSEMDKLNKDKIRELNQQIQTLDMKIDHIQQqiktynkNIEEQRKKNGENiARKQNKYDELVEEAKTIKAEIEELTDELL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2044 ESEHEKLAITKALEAALMEKGEVAVRLSSTQEEVHQLRKGIE--KLRVRIEADEKKQLHVSEKLKESERRNDSLQDKVET 2121
Cdd:PHA02562 245 NLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVcpTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDE 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2122 LERELQMAEENQElvilDAENCKAEVETLKTQIELMTERLKDleldlvtIRSEKENLLKQLQEKQGQASELDTLLSSLKN 2201
Cdd:PHA02562 325 LEEIMDEFNEQSK----KLLELKNKISTNKQSLITLVDKAKK-------VKAAIEELQAEFVDNAEELAKLQDELDKIVK 393
|
....*....
gi 528980992 2202 LLEEKEREK 2210
Cdd:PHA02562 394 TKSELVKEK 402
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
2830-2971 |
4.46e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 42.77 E-value: 4.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2830 RMEEQGKMRGEIAEYQLRLQEAENKHQALLLDTNKQHEMEIQTYREKLTSKEECLSSQKVEIDLLKSSKEELNNSLKATT 2909
Cdd:PRK12705 39 LQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARE 118
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 528980992 2910 EILEELKKTKMENLKHADKLKKENDRAQskikLLVKSCKQLEEEK---VMLQKELSHLEAAQEKQ 2971
Cdd:PRK12705 119 LELEELEKQLDNELYRVAGLTPEQARKL----LLKLLDAELEEEKaqrVKKIEEEADLEAERKAQ 179
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
1558-1641 |
4.53e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 42.76 E-value: 4.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1558 ESLKQLEEEIESQGITKNKEIKE----LKELLSSSREELDDLRKQYLSENEQWQQKLTDVTAEMESKLAAEKRHAEHLTL 1633
Cdd:COG0542 411 EELDELERRLEQLEIEKEALKKEqdeaSFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEELEQRYGKIPEL 490
|
....*...
gi 528980992 1634 ELEVARLQ 1641
Cdd:COG0542 491 EKELAELE 498
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
2396-2638 |
4.68e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 4.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2396 KEESKAAVEMLQTQLKELSEEVAILCVDQETWKVEEQSLDSPlEEIQQLRNNIGKLKvcldadkKQQLHILEKLKESEHQ 2475
Cdd:COG3206 170 REEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLS-EEAKLLLQQLSELE-------SQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2476 ADFLKDTVENLERELKLSGENQEHVTLeaeksKAEVETLKATVEEMDQNLRGLQLDLVNIRSDKEDLTKELQKEQSRVse 2555
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQSPVIQQL-----RAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRI-- 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2556 LETLNSSFENLlrekeqekvqmkeesKAAVEMLQKELEELNEKMAALGNDQetrkVKEQSLSSQVDSLEHEKAQLLQDLD 2635
Cdd:COG3206 315 LASLEAELEAL---------------QAREASLQAQLAQLEARLAELPELE----AELRRLEREVEVARELYESLLQRLE 375
|
...
gi 528980992 2636 DAK 2638
Cdd:COG3206 376 EAR 378
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
2542-2929 |
4.68e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.57 E-value: 4.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2542 LTKELQKEQSRVSELETLNSSFENLLREKEQEKVQMKEESKAAVEMLQKELEELNEKMAALGNDQETRKVKEQSLSSQVD 2621
Cdd:pfam07888 32 LQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2622 SLEHEKAQLLQDLDDAKSNYMILQSSVNDLIQEVEDGKQKLEKKDEEISILKSQTRDQE----QLVSKLSQMEGEQQLWK 2697
Cdd:pfam07888 112 ELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEaerkQLQAKLQQTEEELRSLS 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2698 KQKADLENLMVELEQKIQVLQSKNDALQDTLealqNSSRNLEKELELTKLEKMSFVEKVNTMTVKETELQKEIHAVIQKT 2777
Cdd:pfam07888 192 KEFQELRNSLAQRDTQVLQLQDTITTLTQKL----TTAHRKEAENEALLEELRSLQERLNASERKVEGLGEELSSMAAQR 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2778 VALKEEF------SGEKNRLMEELNLMLEEVKSSKGQLKELMLENSELKksldcvhKDRMEeqgKMRGEIAEYQLRLQEA 2851
Cdd:pfam07888 268 DRTQAELhqarlqAAQLTLQLADASLALREGRARWAQERETLQQSAEAD-------KDRIE---KLSAELQRLEERLQEE 337
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 528980992 2852 ENKHQALlldtnkqhemEIQTYREKltskeeclSSQKVEIDLLKSSKEELNNSLKATTEILEELKKTKMENLKHADKL 2929
Cdd:pfam07888 338 RMEREKL----------EVELGREK--------DCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQELLEYIRQL 397
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
292-500 |
4.82e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.12 E-value: 4.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 292 SKMSELELRLQGQEKEMKGQVNKLQELQLQLEKAKVELNEKEKVLNKNRDELVRTTSQYDQASAKCTALEQKLKKLTEDL 371
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARAL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 372 SCQRQNAESARCSLEQKIKEKEKEFQEELSRQQRSFQTLDQECTQMKARLTQELQQAKNTYNILQAELDKVTSVKQQIEK 451
Cdd:COG3883 96 YRSGGSVSYLDVLLGSESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEA 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 528980992 452 KLEEFKQNFSKTEQALQASQTKENELRRSSEEMKRENSLLKSQSEQRAR 500
Cdd:COG3883 176 QQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAA 224
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
2051-2333 |
4.91e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 42.20 E-value: 4.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2051 AITKALEAALMEKGEVAVRLSSTQEEVHQLRKGIEKLRVRIEADEKKQLHVSEKLKESERRNDSLQDKVETLERELQMAE 2130
Cdd:COG4372 28 ALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQ 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2131 ENQELVILDAENCKAEVETLKTQIELMTERLKDLELDLVTIRSEKENLLKQLQEKQGQASELDTLLSSLKNLLEEKEREK 2210
Cdd:COG4372 108 EEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDE 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2211 IQTKEEAKSAVEMLQTQLRELTEEIAALCDDQETWKVEEQSLDSPAQEVQQLRNNIEKLKVHLDIDKKKQLQILEKLKES 2290
Cdd:COG4372 188 LLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAI 267
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 528980992 2291 EHQADFLKDTVENLERELKLSGENQEHVTLEAEKSKAEVETLK 2333
Cdd:COG4372 268 LVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLI 310
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
2282-2427 |
5.01e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.54 E-value: 5.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2282 QILEKLKESEHQADFLKDTVENLERELKLSGENQEHVTLEA--EKSKAEVETLKATVEKMDQNLRGLQLDLVNIRSEKEd 2359
Cdd:COG2433 380 EALEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEqvERLEAEVEELEAELEEKDERIERLERELSEARSEER- 458
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 528980992 2360 ltKELQKEQsRVSELETLNSSFENLLREKEQEKVQMKEESKaavEMLQTQLKELSEE-VAILCVDQETW 2427
Cdd:COG2433 459 --REIRKDR-EISRLDREIERLERELEEERERIEELKRKLE---RLKELWKLEHSGElVPVKVVEKFTK 521
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
280-706 |
5.12e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 5.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 280 LDQLKAQNQELRSKMSELElRLQGQEKEMKGQVNKLQELQLQLEKAKvELNEKEKVLNKNRDELVRTTSQYDQASAKCTA 359
Cdd:COG4717 80 LKEAEEKEEEYAELQEELE-ELEEELEELEAELEELREELEKLEKLL-QLLPLYQELEALEAELAELPERLEELEERLEE 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 360 LEQKLKKLTEdlscQRQNAESARCSLEQKIKEKEKEFQEELSRQQRSFQTLDQEctqmKARLTQELQQAKNTYNILQAEL 439
Cdd:COG4717 158 LRELEEELEE----LEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQR----LAELEEELEEAQEELEELEEEL 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 440 DKVTS--VKQQIEKKLEEFKQ---------NFSKTEQALQASQTKENEL-------------RRSSEEMKRENSLLKSQS 495
Cdd:COG4717 230 EQLENelEAAALEERLKEARLllliaaallALLGLGGSLLSLILTIAGVlflvlgllallflLLAREKASLGKEAEELQA 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 496 EQRAREVCHLEEELKKAKQCLSQSQNFAEEMKAKNTSQEtmLRDLQEKINQQENSLTLEKLKLALADLEKQRDCSQDllK 575
Cdd:COG4717 310 LPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEE--LQELLREAEELEEELQLEELEQEIAALLAEAGVEDE--E 385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 576 KREHHIEQLNEKLSKTER--ESEALLSALELKKKEYEELKEEKTLFSRWKSENEQLlNQMESEKESLQSKVNHLEtclkt 653
Cdd:COG4717 386 ELRAALEQAEEYQELKEEleELEEQLEELLGELEELLEALDEEELEEELEELEEEL-EELEEELEELREELAELE----- 459
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 528980992 654 QQIKSHEYNERVRTLEMERENLNVEIRNLQNVIDSKTAEAETQKRAYGELQQK 706
Cdd:COG4717 460 AELEQLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREE 512
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2217-2418 |
5.43e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 5.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2217 AKSAVEMLQTQLRELTEEIAALCDDQETWKVEEQSLdspAQEVQQLRNNIEKLKVHLDIDKKKQLQILEKLKESEHQADF 2296
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKAL---LKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2297 LKDTVENLERELK------------------LSGENQEHVTLEAEKSKAEVETLKATVEKMDQN---LRGLQLDLVNIRS 2355
Cdd:COG4942 95 LRAELEAQKEELAellralyrlgrqpplallLSPEDFLDAVRRLQYLKYLAPARREQAEELRADlaeLAALRAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 528980992 2356 EKEDLTKELQKEQSRVSELETLNSSFENLLREKEQEKVQMKEESKAAVEMLQTQLKELSEEVA 2418
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
480-1178 |
5.46e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.40 E-value: 5.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 480 SSEEMKRENSLLKSQSEQRAREVCHLEEELKKAKQCLSQSQNFAEemkakntSQETMLRDLQekINQQENSLTLEKLKLA 559
Cdd:pfam05483 72 NSEGLSRLYSKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIE-------AQRKAIQELQ--FENEKVSLKLEEEIQE 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 560 LADLEKQRDCSQDLLKKREHHIEQLNEKLSKTERESEallSALELKKKEYEELKEEKTLFSRWKSENEQLLNQMESEKES 639
Cdd:pfam05483 143 NKDLIKENNATRHLCNLLKETCARSAEKTKKYEYERE---ETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKE 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 640 LQSKVNHLEtclktqqiksHEYNERVRTLEMERENLNVEIRNLQNVIDSKTAEAETQKRAYGELQQKAEFSDQKHEKEIE 719
Cdd:pfam05483 220 DHEKIQHLE----------EEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIE 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 720 nmclKISHLTGQVEDLEHKLQllsSEIMDKDQRYQDLHAESESLRDLLKSRDSSamtIEPHQRSRLAfeQQSALNNSFAN 799
Cdd:pfam05483 290 ----KKDHLTKELEDIKMSLQ---RSMSTQKALEEDLQIATKTICQLTEEKEAQ---MEELNKAKAA--HSFVVTEFEAT 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 800 IIGEQESVPSERSRCHVATDQSPKSSSMLQNRvvslEFSLESQKQMNSDLQKQCEELVQIKGEIEENL---MKAEQMHQS 876
Cdd:pfam05483 358 TCSLEELLRTEQQRLEKNEDQLKIITMELQKK----SSELEEMTKFKNNKEVELEELKKILAEDEKLLdekKQFEKIAEE 433
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 877 FVAETSQRISKLQEDTSVHQNVVAETLAALESKE---RELQLLNEKLETEQAETGELKKNNHLLQESLKELQFLSETLSL 953
Cdd:pfam05483 434 LKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEhylKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTL 513
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 954 EKKELNSIISLNKKDIEELTQENGTLKEINATLTQEkmnLLQKTESFSNCIDERDRSISELSNQYKQERLTLLQRCEETG 1033
Cdd:pfam05483 514 ELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDE---LESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMK 590
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1034 NAFQDLSEKYKAVQEKNSKLEcllsectgvcedrknELGQLKETFAREHQAFVSQLALAEERNQNLIVELETVQQALQSE 1113
Cdd:pfam05483 591 ILENKCNNLKKQIENKNKNIE---------------ELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEI 655
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 528980992 1114 ITDIQNS---SKRETDGLKQEIMNLK---EEQNKMQQEVSALLQENEHLMELMKTKHEHQCLELEPIQDSE 1178
Cdd:pfam05483 656 IDNYQKEiedKKISEEKLLEEVEKAKaiaDEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSE 726
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
417-708 |
6.08e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 6.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 417 MKARLTQELQQAKNTYNILQAELDKVTSVKQQIEKKLEEFKQnfskteqalqasqtkENELRRSSEEMKRENSLLKSQSE 496
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQ---------------KNGLVDLSEEAKLLLQQLSELES 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 497 QrarevchleeelkkakqcLSQSQNFAEEMKAKNTSQETMLRDLQEKINQQENSLTLEKLKLALADLEKQRDcsQDLLKK 576
Cdd:COG3206 227 Q------------------LAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELA--ELSARY 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 577 REHH--IEQLNEKLSKTERESEAllsalelkkkeyeelkeektlfsrwksENEQLLNQMESEKESLQSKVNHLEtclktQ 654
Cdd:COG3206 287 TPNHpdVIALRAQIAALRAQLQQ---------------------------EAQRILASLEAELEALQAREASLQ-----A 334
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 528980992 655 QIKshEYNERVRTLemerENLNVEIRNLQNvidsktaEAETQKRAYGELQQKAE 708
Cdd:COG3206 335 QLA--QLEARLAEL----PELEAELRRLER-------EVEVARELYESLLQRLE 375
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
2543-2704 |
6.49e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.07 E-value: 6.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2543 TKELQKEQSRVSELETLNSSFENLLREKEQEkvqMKEESKAAVEMLQKELEELNEKMaalgNDQETR-KVKEQSLSSQVD 2621
Cdd:PRK12704 31 AKIKEAEEEAKRILEEAKKEAEAIKKEALLE---AKEEIHKLRNEFEKELRERRNEL----QKLEKRlLQKEENLDRKLE 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2622 SLEHEKAQLLQdlddaksnymilqssvndLIQEVEDGKQKLEKKDEEISILKSQTRDQEQLVSKLSQMEGEQQLWKKQKA 2701
Cdd:PRK12704 104 LLEKREEELEK------------------KEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEE 165
|
...
gi 528980992 2702 DLE 2704
Cdd:PRK12704 166 EAR 168
|
|
| PTZ00440 |
PTZ00440 |
reticulocyte binding protein 2-like protein; Provisional |
2115-3008 |
6.55e-03 |
|
reticulocyte binding protein 2-like protein; Provisional
Pssm-ID: 240419 [Multi-domain] Cd Length: 2722 Bit Score: 42.51 E-value: 6.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2115 LQDKVETLERELQMAEENQELVILDAENCKAEVETLKTQIELMTERLKDLELDLVTIRSEKENLLKQLQEkqgQASELDT 2194
Cdd:PTZ00440 388 LKEKIETLLDSEYFISKYTNIISLSEHTLKAAEDVLKENSQKIADYALYSNLEIIEIKKKYDEKINELKK---SINQLKT 464
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2195 LLSSLKNL--LEEKEREKIQTKEEAKSAVEMLQTQLREL--------------TEEIAALCDDQETWKVEEQSLDSPAQE 2258
Cdd:PTZ00440 465 LISIMKSFydLIISEKDSMDSKEKKESSDSNYQEKVDELlqiinsikeknnivNNNFKNIEDYYITIEGLKNEIEGLIEL 544
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2259 VQQLRNNIEKLKVHLDIDKKKQLQILEKLKESEHQADFLKDTV----------ENLERELKLSGENQEHVTLEAEKSKAE 2328
Cdd:PTZ00440 545 IKYYLQSIETLIKDEKLKRSMKNDIKNKIKYIEENVDHIKDIIslndeidniiQQIEELINEALFNKEKFINEKNDLQEK 624
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2329 VETLKATVEKMDQNLRGLQL--------DLVNIRSEKEDLTKELQKEQSRVSELETLNSS-FENLLREKEQEKVQMKEES 2399
Cdd:PTZ00440 625 VKYILNKFYKGDLQELLDELshflddhkYLYHEAKSKEDLQTLLNTSKNEYEKLEFMKSDnIDNIIKNLKKELQNLLSLK 704
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2400 KAAVEML--------QTQLKELSEEVAILCVDQETWKVEEQSLDSPLEEIQQLRN-----------NIGKLKVCLDADKK 2460
Cdd:PTZ00440 705 ENIIKKQlnnieqdiSNSLNQYTIKYNDLKSSIEEYKEEEEKLEVYKHQIINRKNefilhlyendkDLPDGKNTYEEFLQ 784
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2461 QQLHILEKLKESEHQADFLKDTVENLERELKLSGENQEHVTLEAEKSKAEVETLKATVEEMDQNLRGLQLD--LVNIRSD 2538
Cdd:PTZ00440 785 YKDTILNKENKISNDINILKENKKNNQDLLNSYNILIQKLEAHTEKNDEELKQLLQKFPTEDENLNLKELEkeFNENNQI 864
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2539 KEDLTKELQKEQSRVSELETLN----------SSFENLLREKEQEKVQM--------------KEESKAAVEMLQKELEE 2594
Cdd:PTZ00440 865 VDNIIKDIENMNKNINIIKTLNiainrsnsnkQLVEHLLNNKIDLKNKLeqhmkiintdniiqKNEKLNLLNNLNKEKEK 944
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2595 LNEKMAALGNDQETRKVKEQ-------------SLSSQVDSLEHEKAQ---LLQDLDDAKSNYMILQSSVNDLIQEVEDG 2658
Cdd:PTZ00440 945 IEKQLSDTKINNLKMQIEKTleyydkskeningNDGTHLEKLDKEKDEwehFKSEIDKLNVNYNILNKKIDDLIKKQHDD 1024
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2659 KQKL------EKKDEEISILKSQTRDQEQLVSKLSQMEGEQQLWKKQKADLENLMVELEQKIQVLQSKNDALQDTLEALQ 2732
Cdd:PTZ00440 1025 IIELidklikEKGKEIEEKVDQYISLLEKMKTKLSSFHFNIDIKKYKNPKIKEEIKLLEEKVEALLKKIDENKNKLIEIK 1104
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2733 NSS----------RNLEKELELTKLEKMSFVEKVNTMTVKETELQKEIHAVIQKTvalkEEFSGEKNRLMeeLNLMLEEV 2802
Cdd:PTZ00440 1105 NKShehvvnadkeKNKQTEHYNKKKKSLEKIYKQMEKTLKELENMNLEDITLNEV----NEIEIEYERIL--IDHIVEQI 1178
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2803 KSSKGQLKELMLENSELKKSLDCVHKDRMEEQGKMRGEIAEYQLRlqeaenkhqalllDTNKQHEMEI-QTYREKLTSKE 2881
Cdd:PTZ00440 1179 NNEAKKSKTIMEEIESYKKDIDQVKKNMSKERNDHLTTFEYNAYY-------------DKATASYENIeELTTEAKGLKG 1245
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2882 ECLSSQKveIDLLKSSKEELNNSLKATTEILEELKKTK---------MENLKHADKLKKENDRAQSKIKLLVKSCKQLEE 2952
Cdd:PTZ00440 1246 EANRSTN--VDELKEIKLQVFSYLQQVIKENNKMENALheiknmyefLISIDSEKILKEILNSTKKAEEFSNDAKKELEK 1323
|
970 980 990 1000 1010
....*....|....*....|....*....|....*....|....*....|....*...
gi 528980992 2953 EKVMLQKELSHLEAAQEKQRA--DTVVDANVDELITEMKELKETLEEKTKEADEYLDK 3008
Cdd:PTZ00440 1324 TDNLIKQVEAKIEQAKEHKNKiyGSLEDKQIDDEIKKIEQIKEEISNKRKEINKYLSN 1381
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
2014-2276 |
6.78e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.25 E-value: 6.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2014 RSELENQIEQLNKEKDSLVWESESL---QTKLSE---------SEHEKLAITKALEAALME----KGEVAVRLSSTQEEV 2077
Cdd:COG3096 780 RAAREKRLEELRAERDELAEQYAKAsfdVQKLQRlhqafsqfvGGHLAVAFAPDPEAELAAlrqrRSELERELAQHRAQE 859
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2078 HQLRKGIEKLRVRIEADEKKQLHVSeKLKEserrnDSLQDKVETLERELQMAEENQELVildAENCKA--EVETLKTQIE 2155
Cdd:COG3096 860 QQLRQQLDQLKEQLQLLNKLLPQAN-LLAD-----ETLADRLEELREELDAAQEAQAFI---QQHGKAlaQLEPLVAVLQ 930
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2156 LMTERLKDLELDLVTIRSEKENLLKQL---------------QEKQGQASELDTLLSSLKNLLEEKEREkiqtKEEAKSA 2220
Cdd:COG3096 931 SDPEQFEQLQADYLQAKEQQRRLKQQIfalsevvqrrphfsyEDAVGLLGENSDLNEKLRARLEQAEEA----RREAREQ 1006
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 528980992 2221 VEMLQTQLRELTEEIAALcddqetwkveEQSLDSPAQEVQQLRNNIEKLKVHLDID 2276
Cdd:COG3096 1007 LRQAQAQYSQYNQVLASL----------KSSRDAKQQTLQELEQELEELGVQADAE 1052
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
904-1142 |
7.04e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 7.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 904 AALESKERELQLLNEKLETEQAETGELKKNNHLLQESLKELQFLSETLSLEKKELNSIISLNKKDIEELTQENGTLKEIN 983
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 984 ATLTQEKMNLLQKTESFSNcideRDRSISELSNQYKQERLTLLQRCEETGNAFQDLSEKYKAVQEKNSKLECLLsectgv 1063
Cdd:COG4942 100 EAQKEELAELLRALYRLGR----QPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL------ 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 528980992 1064 cEDRKNELGQLKETFAREHQafvsQLALAEERNQNLIVELETVQQALQSEITDIQNSSKRETDGLKQEIMNLKEEQNKM 1142
Cdd:COG4942 170 -EAERAELEALLAELEEERA----ALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
419-601 |
7.06e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 7.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 419 ARLTQELQQAKNTYNILQAELDKVTSVKQQIEKKLEEFK--QNFSKTEQALQASQTKENELRRSSEEMKRENSLLKSQSE 496
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQERREALQrlAEYSWDEIDVASAEREIAELEAELERLDASSDDLAALEE 692
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 497 QRARevchLEEELKKAKQCLSQSQNFAEEMKAKNTSQETMLRDLQEKINQQENSLTLEKLKLALADL--EKQRDCSQDLL 574
Cdd:COG4913 693 QLEE----LEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFaaALGDAVERELR 768
|
170 180
....*....|....*....|....*..
gi 528980992 575 KKREHHIEQLNEKLSKTERESEALLSA 601
Cdd:COG4913 769 ENLEERIDALRARLNRAEEELERAMRA 795
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
2460-2651 |
7.15e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.93 E-value: 7.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2460 KQQLHILE-KLKESEHQ-ADFLKDT-VENLERELK-----LSGENQEHVTLEAEKSKAE--VETLKATVEEMDQNLRGLQ 2529
Cdd:COG3206 181 EEQLPELRkELEEAEAAlEEFRQKNgLVDLSEEAKlllqqLSELESQLAEARAELAEAEarLAALRAQLGSGPDALPELL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2530 LD--LVNIRSDKEDLTKELQKEQSRVSE----LETLNSSFENLLREKEQEKVQMKEESKAAVEMLQKELEELNEKMAALg 2603
Cdd:COG3206 261 QSpvIQQLRAQLAELEAELAELSARYTPnhpdVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQL- 339
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 528980992 2604 ndqetrkvkeQSLSSQVDSLEHEKAQLLQDLDDAKSNYMILQSSVNDL 2651
Cdd:COG3206 340 ----------EARLAELPELEAELRRLEREVEVARELYESLLQRLEEA 377
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
2766-2920 |
7.21e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.15 E-value: 7.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2766 LQKEIHAVIQKTvalKEEFSGEKNRLMEELNLMLEEVKSSKGQLKELMLENSELKksldcvhkDRMEEqgkMRGEIAEYQ 2845
Cdd:COG2433 382 LEELIEKELPEE---EPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELE--------AELEE---KDERIERLE 447
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 528980992 2846 LRLqeaenkhqallldtnkqHEMEIQTYREKLTSKEecLSSQKVEIDLLKSSKEELNNSLKATTEILEELKKTKM 2920
Cdd:COG2433 448 REL-----------------SEARSEERREIRKDRE--ISRLDREIERLERELEEERERIEELKRKLERLKELWK 503
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
844-1184 |
7.23e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.36 E-value: 7.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 844 QMNSDLQKQCEELVQIKGEIEENlmkaeqmhQSFVAETSQRISKLQEDTsvhqnvvaetlaalESKERELQLLNEKLETE 923
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEENIERL--------DLIIDEKRQQLERLRRER--------------EKAERYQALLKEKREYE 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 924 QAE-TGELKKNNHLLQESLKELQFLSEtlslEKKELNSIISLNKKDIEELTQENGTL-KEINATLTQEKMNLLQKTESFS 1001
Cdd:TIGR02169 225 GYElLKEKEALERQKEAIERQLASLEE----ELEKLTEEISELEKRLEEIEQLLEELnKKIKDLGEEEQLRVKEKIGELE 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1002 NCIDERDRSISELSNQYKQERLTLLQRCEETGNAFQDLSEKYKAVQEKNSKLECLlsectgvcedrKNELGQLKEtfarE 1081
Cdd:TIGR02169 301 AEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKL-----------TEEYAELKE----E 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1082 HQAFVSQLALAEERNQNLIVELETVQQALqSEITDIQNSSKRETDGLKQEIMNLKEEQNKMQQEVSALLQENEHLMELMK 1161
Cdd:TIGR02169 366 LEDLRAELEEVDKEFAETRDELKDYREKL-EKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKE 444
|
330 340
....*....|....*....|....*..
gi 528980992 1162 TKHEH---QCLELEPI-QDSEKEEREI 1184
Cdd:TIGR02169 445 DKALEikkQEWKLEQLaADLSKYEQEL 471
|
|
| Nup88 |
pfam10168 |
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal ... |
2071-2233 |
7.42e-03 |
|
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein has no obvious structural motifs but is the region for binding to Nup98, one of the components of the nuclear pore. the C-terminal end is a predicted coiled-coil domain. Nup88 is overexpressed in tumour cells.
Pssm-ID: 462975 [Multi-domain] Cd Length: 713 Bit Score: 41.95 E-value: 7.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2071 SSTQEEVHQLRKGIEKLRvriEADEKKQLHVSEklkESERRNDSLQDKVETLERELQMAEENQELVILDAENCKAEVETL 2150
Cdd:pfam10168 528 PSPQECLQLLSRATQVFR---EEYLKKHDLARE---EIQKRVKLLKLQKEQQLQELQSLEEERKSLSERAEKLAEKYEEI 601
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2151 KTQIELMTERLKDLELDL-----VTIRSEKEnLLKQLQEKQGQASELDTLLSSLKNLLEEKEREKIQTKE-EAKSAVEML 2224
Cdd:pfam10168 602 KDKQEKLMRRCKKVLQRLnsqlpVLSDAERE-MKKELETINEQLKHLANAIKQAKKKMNYQRYQIAKSQSiRKKSSLSLS 680
|
....*....
gi 528980992 2225 QTQLRELTE 2233
Cdd:pfam10168 681 EKQRKTIKE 689
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
828-1172 |
7.63e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 7.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 828 LQNRVVSLEFSLESQKQMNSDLQKQCEELVQIKGEIEENLMKAEQMHQSFVAETSQRISKLQEDTSVHQNVVAETLAALE 907
Cdd:COG4717 137 LEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELE 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 908 SKERELQLLNEKLETEQAETGELKKNNHLLQESLkELQFLSETLSLEkKELNSIISLNKKDIEELTQENGTLKEINATLT 987
Cdd:COG4717 217 EAQEELEELEEELEQLENELEAAALEERLKEARL-LLLIAAALLALL-GLGGSLLSLILTIAGVLFLVLGLLALLFLLLA 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 988 QEKMNLLQKTESFSNCIDERDRSISELSNQYKQERLTLLQRCEETGNAFQDLSEKYKAVQEKNSKLECLLSEctgVCEDR 1067
Cdd:COG4717 295 REKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLE---ELEQE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1068 KNELgqLKETFAREHQAFVSQLALAEERnQNLIVELETVQQALQSEITDIQNSSKRETDG--------LKQEIMNLKEEQ 1139
Cdd:COG4717 372 IAAL--LAEAGVEDEEELRAALEQAEEY-QELKEELEELEEQLEELLGELEELLEALDEEeleeeleeLEEELEELEEEL 448
|
330 340 350
....*....|....*....|....*....|....*.
gi 528980992 1140 NKMQQEVSALLQENEHLM---ELMKTKHEHQCLELE 1172
Cdd:COG4717 449 EELREELAELEAELEQLEedgELAELLQELEELKAE 484
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1900-2307 |
8.17e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 8.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1900 QRIQSEKDSMEHHAlSAEASLEAVQTEKLYLEKDNENKQTVITCLEEGLSV--VTSERDQLRGELDTLSKENQELDQMSE 1977
Cdd:COG4717 78 EELKEAEEKEEEYA-ELQEELEELEEELEELEAELEELREELEKLEKLLQLlpLYQELEALEAELAELPERLEELEERLE 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1978 KMKEKIRELESHQSECLHLQEWLQSLEKDSQALSLVR--------SELENQIEQLNKEKDSLVWESESLQTKLS--ESEH 2047
Cdd:COG4717 157 ELRELEEELEELEAELAELQEELEELLEQLSLATEEElqdlaeelEELQQRLAELEEELEEAQEELEELEEELEqlENEL 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2048 EKLAITKALEAALMEKGEVAVRLS-----STQEEVHQLRKGIEKLRVRIEADEKKQLHVSEKLKESERRNDSLQDKVETL 2122
Cdd:COG4717 237 EAAALEERLKEARLLLLIAAALLAllglgGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEEL 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2123 ERE--LQMAEENQELVILDAENCKAEVETLKTQIELMTERLK-DLELDLVTIRSEKENLLkqlqeKQGQASELDTLLSSL 2199
Cdd:COG4717 317 EEEelEELLAALGLPPDLSPEELLELLDRIEELQELLREAEElEEELQLEELEQEIAALL-----AEAGVEDEEELRAAL 391
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 2200 knlleEKEREKIQTKEEAKSAVEMLQTQLRELTEEIAALCDDQ--ETWKVEEQSLDSPAQEVQQLRNNIEKLKVHLdidk 2277
Cdd:COG4717 392 -----EQAEEYQELKEELEELEEQLEELLGELEELLEALDEEEleEELEELEEELEELEEELEELREELAELEAEL---- 462
|
410 420 430
....*....|....*....|....*....|
gi 528980992 2278 kKQLQILEKLKESEHQADFLKDTVENLERE 2307
Cdd:COG4717 463 -EQLEEDGELAELLQELEELKAELRELAEE 491
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
15-210 |
8.87e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 8.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 15 RALQKIQELEGQLDKLKKERQQRQFQLETLEaaLQKQKQKVENEKTEGANLKRENQSLMEICENLEKTKQKISHELQVKE 94
Cdd:COG4913 252 ELLEPIRELAERYAAARERLAELEYLRAALR--LWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 95 SQVNFQEGQ-LNSSKKQIEKLEQELKRCKSELERSQQAAQSADVSLNsclTPQKIFA----------TPLTPSQYYSGSK 163
Cdd:COG4913 330 AQIRGNGGDrLEQLEREIERLERELEERERRRARLEALLAALGLPLP---ASAEEFAalraeaaallEALEEELEALEEA 406
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 528980992 164 YEDLKEKYNKEVEERKRLEAEVKALQAKKAsqTIPQSTMNHRD-IARH 210
Cdd:COG4913 407 LAEAEAALRDLRRELRELEAEIASLERRKS--NIPARLLALRDaLAEA 452
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1753-1879 |
9.87e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.77 E-value: 9.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528980992 1753 PNASVPRDFLENQVTIQSLELKVKETSNENLRLLHGIEERDQKVENLLNEIKELDSKFHLL-----EVQ-LTTKIEAcva 1826
Cdd:COG2433 400 EKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARSEERREirkdrEISrLDREIER--- 476
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 528980992 1827 LEKIVEELKKEKLDLNEKLESFScHNQREESSGGLTSNLemVTSKFPHEGIED 1879
Cdd:COG2433 477 LERELEEERERIEELKRKLERLK-ELWKLEHSGELVPVK--VVEKFTKEAIRR 526
|
|
| |
