|
Name |
Accession |
Description |
Interval |
E-value |
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
214-278 |
1.54e-34 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 126.36 E-value: 1.54e-34
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 530401713 214 IGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKV 278
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
60-124 |
5.47e-31 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 116.35 E-value: 5.47e-31
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 530401713 60 VGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKL 124
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
214-279 |
4.46e-28 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 108.06 E-value: 4.46e-28
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 530401713 214 IGDRVLVGGT-KAGVVRFLGETDFAKGEWCGVELDEPL-GKNDGAVAGTRYFQCQPKYGLFAPVHKVT 279
Cdd:smart01052 1 VGDRVEVGGGgRRGTVRYVGPTPFAPGVWVGVELDEPLrGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
60-125 |
2.31e-27 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 106.13 E-value: 2.31e-27
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 530401713 60 VGERVWVNGN-KPGFIQFLGETQFAPGQWAGIVLDEP-IGKNDGSVAGVRYFQCEPLKGIFTRPSKLT 125
Cdd:smart01052 1 VGDRVEVGGGgRRGTVRYVGPTPFAPGVWVGVELDEPlRGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
357-1164 |
5.14e-20 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 97.05 E-value: 5.14e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 357 LKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHdqhvLELEAKMDQLRTMVEAADREKVELLNQLEEEKR 436
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEV----SELEEEIEELQKELYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 437 KVEDLQFRVEEESITKGDLEQKSQISEDPENTQTKlehaRIKELEQSLLFEKTKADKLQRELEDTrvatvseKSRIMELE 516
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEELAELEE----KLEELKEELESLEAELEELEAELEEL-------ESRLEELE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 517 KDLALRVQEVAELRRRLESNKpagdvdmslSLLQEISSLQEKLEVTRTDHQREITSLkehfgaREETHQKEIKALYTATE 596
Cdd:TIGR02168 379 EQLETLRSKVAQLELQIASLN---------NEIERLEARLERLEDRRERLQQEIEEL------LKKLEEAELKELQAELE 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 597 KLSKENESLKSKLEHANKEnsdvialwKSKLETAIASHQQAMEELKvsfsKGLGTETAEFAELKTQIEKMRLDYQHEIEN 676
Cdd:TIGR02168 444 ELEEELEELQEELERLEEA--------LEELREELEEAEQALDAAE----RELAQLQARLDSLERLQENLEGFSEGVKAL 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 677 LQNQQD------------SERAAHAKEME-ALRAKLMKVIKEKENSLEAIRSKLDKAEDQHLVEMEdtLNKLQEAEIKVK 743
Cdd:TIGR02168 512 LKNQSGlsgilgvlseliSVDEGYEAAIEaALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLP--LDSIKGTEIQGN 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 744 ELEVLQAK--CNEQTKVIDNFTSQLKATEEKLLDL--------DALRKA--------------------------SSEGK 787
Cdd:TIGR02168 590 DREILKNIegFLGVAKDLVKFDPKLRKALSYLLGGvlvvddldNALELAkklrpgyrivtldgdlvrpggvitggSAKTN 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 788 SEMKKLRQQLEAAEKQIKHLEieknaesSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEA 867
Cdd:TIGR02168 670 SSILERRREIEELEEKIEELE-------EKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV 742
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 868 VSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKfrekdereeqlikaKEKLENDIAEIMKMSGDNSSQLTKM 947
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE--------------IEELEAQIEQLKEELKALREALDEL 808
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 948 NDELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQeaakkheeEKKELERKLSDLEKKMETSHNQCQELKA 1027
Cdd:TIGR02168 809 RAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSE--------DIESLAAEIEELEELIEELESELEALLN 880
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1028 RYERAtSETKTKHEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQADKAKA------AQTAEDAMQIMEQMTKE 1101
Cdd:TIGR02168 881 ERASL-EEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVridnlqERLSEEYSLTLEEAEAL 959
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 530401713 1102 KTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQA 1164
Cdd:TIGR02168 960 ENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEA 1022
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
704-1322 |
1.50e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 95.51 E-value: 1.50e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 704 KEKENSLEAIRSKLDKAEDQhLVEMEDTLNKLQ------------EAEIKVKELEVLQAKCNEQTKVIDNFTSQLKATEE 771
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDI-LNELERQLKSLErqaekaerykelKAELRELELALLVLRLEELREELEELQEELKEAEE 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 772 KLLDLDA-----------LRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLS 840
Cdd:TIGR02168 254 ELEELTAelqeleekleeLRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLD 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 841 EVSQVKETLEKELQILKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLI 920
Cdd:TIGR02168 334 ELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLE 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 921 KAKEKLENDIAEIMKMSGDNSSQLTKMndELRLKERDVEELQLKLTKANENASFLQKSIEdmtvKAEQSQQEAAKKHEEE 1000
Cdd:TIGR02168 414 DRRERLQQEIEELLKKLEEAELKELQA--ELEELEEELEELQEELERLEEALEELREELE----EAEQALDAAERELAQL 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1001 KKELERKLSDLEKKMETSHNQCQELKARYERA------------TSETKTKHEEILQ-NLQKTLLDTEDKLKGA----RE 1063
Cdd:TIGR02168 488 QARLDSLERLQENLEGFSEGVKALLKNQSGLSgilgvlselisvDEGYEAAIEAALGgRLQAVVVENLNAAKKAiaflKQ 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1064 ENSG-----LLQELEELRKQADKAKAAQTAEDAMQIMEQMTKEKTETLASLE---------DTKQTNAKLQNELD----- 1124
Cdd:TIGR02168 568 NELGrvtflPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvlvvDDLDNALELAKKLRpgyri 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1125 -TL------------KENNLKNVEELNKSKELLTVEnQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRD 1191
Cdd:TIGR02168 648 vTLdgdlvrpggvitGGSAKTNSSILERRREIEELE-EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR 726
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1192 EVTSHQKLEEERSVLNNQLLEMKKRESKFIKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAK---- 1267
Cdd:TIGR02168 727 QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALReald 806
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*
gi 530401713 1268 SLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDTQADEDERAQESQ 1322
Cdd:TIGR02168 807 ELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEI 861
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
560-1313 |
7.23e-18 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 90.59 E-value: 7.23e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 560 EVTRTDHQREITSLKEHFGAREETHQKEIKALytatEKLSKENESLKsKLEHANKENSDVIALWKSKLETAIASHQQAME 639
Cdd:PTZ00121 1080 DFDAKEDNRADEATEEAFGKAEEAKKTETGKA----EEARKAEEAKK-KAEDARKAEEARKAEDARKAEEARKAEDAKRV 1154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 640 ELKVSFSKGLGTETAEFAELKTQIEKMRldyqhEIENLQNQQDSERAAHAKEMEALRAKlmkvikEKENSLEAIRSKLDK 719
Cdd:PTZ00121 1155 EIARKAEDARKAEEARKAEDAKKAEAAR-----KAEEVRKAEELRKAEDARKAEAARKA------EEERKAEEARKAEDA 1223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 720 AEDQHLVEMEDTLNKLQEAEIKVKELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEA 799
Cdd:PTZ00121 1224 KKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKK 1303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 800 AEKQIKHLEIEKNAESSKASSITRELQGRELKL-TNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQRSMQETV 878
Cdd:PTZ00121 1304 ADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKkAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAA 1383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 879 NKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKE--- 955
Cdd:PTZ00121 1384 KKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEeak 1463
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 956 ------RDVEELQLKLTKANEnASFLQKSIEDMTVKAEQSQQEAAKKH-EEEKKELERKLSDLEKKMETSHNQCQELKAR 1028
Cdd:PTZ00121 1464 kkaeeaKKADEAKKKAEEAKK-ADEAKKKAEEAKKKADEAKKAAEAKKkADEAKKAEEAKKADEAKKAEEAKKADEAKKA 1542
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1029 YERATSETKTKHEEILQNLQKTLLDTEDKlkgAREENSGLLQELEELRkQADKAKaaqtAEDAMQIMEQMTKEKTETLAS 1108
Cdd:PTZ00121 1543 EEKKKADELKKAEELKKAEEKKKAEEAKK---AEEDKNMALRKAEEAK-KAEEAR----IEEVMKLYEEEKKMKAEEAKK 1614
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1109 LEDTKQTNAKLQNEldtlkENNLKNVEELNKSKElltVENQKMEEFRKEIETLKQAAAQKSQQlsalQEENVKLAEELGR 1188
Cdd:PTZ00121 1615 AEEAKIKAEELKKA-----EEEKKKVEQLKKKEA---EEKKKAEELKKAEEENKIKAAEEAKK----AEEDKKKAEEAKK 1682
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1189 SRDEVTSHQKLEEERSVLNNQLLEMKKRESKFIKDADEEKASlQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKS 1268
Cdd:PTZ00121 1683 AEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKA-EEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAH 1761
|
730 740 750 760
....*....|....*....|....*....|....*....|....*
gi 530401713 1269 LHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDTQAD 1313
Cdd:PTZ00121 1762 LKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDN 1806
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
344-967 |
3.50e-17 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 88.27 E-value: 3.50e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 344 ARKISGTTALQEALKE-----KQQHIEQLLAERDLERAEVAKATSHVGEIEQELAlaRDGHDQHVLELEAKMDQLRtmvE 418
Cdd:PTZ00121 1223 AKKAEAVKKAEEAKKDaeeakKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEA--RKADELKKAEEKKKADEAK---K 1297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 419 AADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEQKSQISEDPENTQTKLEHARIKELEQSLlfEKTKADKLQREL 498
Cdd:PTZ00121 1298 AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAE--EKAEAAEKKKEE 1375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 499 EDTRVATV----SEKSRIMELEKDLALRVQEVAELRRRLESNKPAGDVDMSLSLLQEISSLQEKLEVTR----TDHQREI 570
Cdd:PTZ00121 1376 AKKKADAAkkkaEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKkadeAKKKAEE 1455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 571 TSLKEHFGAREETHQKEIKALYTATEKlsKENESLKSKLEHANKENSDviaLWKSKLETAIASHQQAMEELKVSFSKGLG 650
Cdd:PTZ00121 1456 AKKAEEAKKKAEEAKKADEAKKKAEEA--KKADEAKKKAEEAKKKADE---AKKAAEAKKKADEAKKAEEAKKADEAKKA 1530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 651 TETAEFAELKTQIEKMRLDYQHEIENLQNQQDSERAAHAKEMEALRAKLMKVIKEKENSLEAIRSKLDKAEDQHLVEMED 730
Cdd:PTZ00121 1531 EEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAE 1610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 731 TLNKLQEAEIKVKELEvlqaKCNEQTKVIDNFTsqlKATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIE 810
Cdd:PTZ00121 1611 EAKKAEEAKIKAEELK----KAEEEKKKVEQLK---KKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKA 1683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 811 KNAESSKASSITRELQGRElKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNM 890
Cdd:PTZ00121 1684 EEDEKKAAEALKKEAEEAK-KAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHL 1762
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 530401713 891 LSSDLEKLRENLADMEAKFrekderEEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTK 967
Cdd:PTZ00121 1763 KKEEEKKAEEIRKEKEAVI------EEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIK 1833
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
703-1262 |
2.37e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 84.99 E-value: 2.37e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 703 IKEKENSLEAIRSKLDKAEDqHLVEMEDTLNKLQ-------------------EAEIKVKELEVLQAKCNEQTKVIDNFT 763
Cdd:COG1196 174 KEEAERKLEATEENLERLED-ILGELERQLEPLErqaekaeryrelkeelkelEAELLLLKLRELEAELEELEAELEELE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 764 SQLKATEEKL-----------LDLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKL 832
Cdd:COG1196 253 AELEELEAELaeleaeleelrLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEEL 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 833 TNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREK 912
Cdd:COG1196 333 EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEAL 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 913 DEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQE 992
Cdd:COG1196 413 LERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 993 AAKKHEEEKKELERKLSDLEKKMETSHNQ-CQELKARYERATSETKTKHEEILQNLQKTLLDTEDKLKGARE----ENSG 1067
Cdd:COG1196 493 LLLLLEAEADYEGFLEGVKAALLLAGLRGlAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEylkaAKAG 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1068 ----LLQELEELRKQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKEL 1143
Cdd:COG1196 573 ratfLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLE 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1144 LTVENQ----KMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKRESK 1219
Cdd:COG1196 653 GEGGSAggslTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEA 732
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 530401713 1220 FIKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGE 1262
Cdd:COG1196 733 EREELLEELLEEEELLEEEALEELPEPPDLEELERELERLERE 775
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
654-1342 |
5.39e-16 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 83.96 E-value: 5.39e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 654 AEFAELKTQIEKMRLDYQHEIENLQNQQDsERAaHAKEMEALRAKLMKV-IKEKENSLEAIRSKLDKAEDQhLVEMEDTL 732
Cdd:TIGR02169 177 EELEEVEENIERLDLIIDEKRQQLERLRR-ERE-KAERYQALLKEKREYeGYELLKEKEALERQKEAIERQ-LASLEEEL 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 733 NKLQ-EAEIKVKELEVLQAKCNEQTKVIDNFTS-QLKATEEKLLDLDALRkASSEGKSEMKKlrQQLEAAEKQIKHLEIE 810
Cdd:TIGR02169 254 EKLTeEISELEKRLEEIEQLLEELNKKIKDLGEeEQLRVKEKIGELEAEI-ASLERSIAEKE--RELEDAEERLAKLEAE 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 811 KNAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQRSMQETVNKLH-------Q 883
Cdd:TIGR02169 331 IDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINelkreldR 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 884 KEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQL 963
Cdd:TIGR02169 411 LQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQR 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 964 KLTKANENASFLQKS------------------------------------------------IEDMTVKAEQSQQEAAK 995
Cdd:TIGR02169 491 ELAEAEAQARASEERvrggraveevlkasiqgvhgtvaqlgsvgeryataievaagnrlnnvvVEDDAVAKEAIELLKRR 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 996 KHEEEKKELERKLSDLEKKMETSHNQCQ--------ELKARYERATS---------ETKTKHEEILQNLQKTLLDTEDKL 1058
Cdd:TIGR02169 571 KAGRATFLPLNKMRDERRDLSILSEDGVigfavdlvEFDPKYEPAFKyvfgdtlvvEDIEAARRLMGKYRMVTLEGELFE 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1059 K------GAREENSGLL---QELEELRKQADKAKAAQTAEDAMQI-MEQMTKEKTETLASLEDTKQTNAKLQNELDTLKE 1128
Cdd:TIGR02169 651 KsgamtgGSRAPRGGILfsrSEPAELQRLRERLEGLKRELSSLQSeLRRIENRLDELSQELSDASRKIGEIEKEIEQLEQ 730
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1129 NNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSR-DEVTSH-QKLEEERSVL 1206
Cdd:TIGR02169 731 EEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRiPEIQAElSKLEEEVSRI 810
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1207 NNQLLEMKKRESK-----------------FIKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKS- 1268
Cdd:TIGR02169 811 EARLREIEQKLNRltlekeylekeiqelqeQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKe 890
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 530401713 1269 ---LHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDTQADEDERAQESQQMIDFLNSVIVDLQRKNQDL 1342
Cdd:TIGR02169 891 rdeLEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEI 967
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
660-1357 |
2.79e-15 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 81.70 E-value: 2.79e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 660 KTQIEKMRLDYQHEIENLQNQQDSERAAHAKEMEALRAKLMKV------IKEKENSLEAIRSKLDKAEDQHLVEMEDTLN 733
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLqtklqeMQMERDAMADIRRRESQSQEDLRNQLQNTVH 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 734 KLQEAE-IKVKELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDAL--RKASSEGKSEMKKLRQQLEAAEKQIKHLEIE 810
Cdd:pfam15921 153 ELEAAKcLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEAsgKKIYEHDSMSTMHFRSLGSAISKILRELDTE 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 811 KNAESSKASSITRELQGRELKLTN-----LQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQRSMQ----ETVNKL 881
Cdd:pfam15921 233 ISYLKGRIFPVEDQLEALKSESQNkiellLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEiiqeQARNQN 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 882 HQKEEQFNMLSSDLEKLRENLADMEAKFREK-DEREEQLIKAKEKLENDIAE---IMKMSGDNSSQLTKMNDEL--RLKE 955
Cdd:pfam15921 313 SMYMRQLSDLESTVSQLRSELREAKRMYEDKiEELEKQLVLANSELTEARTErdqFSQESGNLDDQLQKLLADLhkREKE 392
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 956 RDVEELQLKL-----TKANENASFLQKSIEDMTVKAEQsqqeaakkheeekkelerklsdLEKKMETSHNQCQelkARYE 1030
Cdd:pfam15921 393 LSLEKEQNKRlwdrdTGNSITIDHLRRELDDRNMEVQR----------------------LEALLKAMKSECQ---GQME 447
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1031 RATSETKTKHE--EILQNLQKTLLDTEDKLKGAREENSGLLQELEEL-RKQADKAKAAQTAEDAMqimEQMTKEKTETLA 1107
Cdd:pfam15921 448 RQMAAIQGKNEslEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSeRTVSDLTASLQEKERAI---EATNAEITKLRS 524
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1108 SLEDTKQTNAKLQNEldtlkENNLKNVE-ELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEEL 1186
Cdd:pfam15921 525 RVDLKLQELQHLKNE-----GDHLRNVQtECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEI 599
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1187 GRSRDEVTSHQKLEEERsvlNNQLLEMKKReskfIKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGE-NAS 1265
Cdd:pfam15921 600 NDRRLELQEFKILKDKK---DAKIRELEAR----VSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNElNSL 672
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1266 AKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDTQADEDERAQESQQMidfLNSVIVDLQRKNQDLKMK 1345
Cdd:pfam15921 673 SEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMG---MQKQITAKRGQIDALQSK 749
|
730
....*....|..
gi 530401713 1346 VEMMSEAALNGN 1357
Cdd:pfam15921 750 IQFLEEAMTNAN 761
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
406-1296 |
3.43e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 81.26 E-value: 3.43e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 406 LEAKMDQLRTMVEAA------DREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEQKSQISEDPENTQTKLEHARIKE 479
Cdd:TIGR02168 150 IEAKPEERRAIFEEAagiskyKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELAL 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 480 LEQSLLFEKTKADKLQRELEDTRVATVSEKSRIMELEKDLALRVQEVAELRRRLESNKPAgdvdmSLSLLQEISSLQEKL 559
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKE-----LYALANEISRLEQQK 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 560 EVTRTDHQREITSLKEHFGAREETHQKEIKALYTATEkLSKENESLKSKLEHANKENSDVIALWKSkLETAIASHQQAME 639
Cdd:TIGR02168 305 QILRERLANLERQLEELEAQLEELESKLDELAEELAE-LEEKLEELKEELESLEAELEELEAELEE-LESRLEELEEQLE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 640 ELK---VSFSKGLGTETAEFAELKTQIEkmrlDYQHEIENL-QNQQDSERAAHAKEMEALRAKLMKVIKEKEN------S 709
Cdd:TIGR02168 383 TLRskvAQLELQIASLNNEIERLEARLE----RLEDRRERLqQEIEELLKKLEEAELKELQAELEELEEELEElqeeleR 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 710 LEAIRSKLDKAEDQHLVEMEDTLNKLQEAEIKVKELEVLQAKcneqtkvIDNFTSQLKATEEKLLDLDALRKASSEGKSE 789
Cdd:TIGR02168 459 LEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQEN-------LEGFSEGVKALLKNQSGLSGILGVLSELISV 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 790 MKKLRQQLEAA-EKQIKHLEIEKNAESSKA-SSITRELQGR----ELKLTNLQENLSEVSQVKETLEKELQILKE--KFA 861
Cdd:TIGR02168 532 DEGYEAAIEAAlGGRLQAVVVENLNAAKKAiAFLKQNELGRvtflPLDSIKGTEIQGNDREILKNIEGFLGVAKDlvKFD 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 862 EASEEAVSvqrsmqetvnklhqkeeqfNMLSSDLekLRENLADMEAKFREKDEREEQLIKAKEKLENDIAeIMKMSGDNS 941
Cdd:TIGR02168 612 PKLRKALS-------------------YLLGGVL--VVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGV-ITGGSAKTN 669
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 942 SQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEDMTvkaeqsqqeaakkheeekkeleRKLSDLEKKMETSHNQ 1021
Cdd:TIGR02168 670 SSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELE----------------------EELEQLRKELEELSRQ 727
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1022 CQELKARYERATSETKtKHEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRkqADKAKAAQTAEDAMQIMEQMTKE 1101
Cdd:TIGR02168 728 ISALRKDLARLEAEVE-QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAE--AEIEELEAQIEQLKEELKALREA 804
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1102 KTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVK 1181
Cdd:TIGR02168 805 LDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAS 884
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1182 LAEELgrsrdevtshQKLEEERSVLNNQLLEMKKRESKFIKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLrG 1261
Cdd:TIGR02168 885 LEEAL----------ALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLT-L 953
|
890 900 910
....*....|....*....|....*....|....*
gi 530401713 1262 ENASAKslhsvVQTLESDKVKLELKVKNLELQLKE 1296
Cdd:TIGR02168 954 EEAEAL-----ENKIEDDEEEARRRLKRLENKIKE 983
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
466-1296 |
3.45e-15 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 81.56 E-value: 3.45e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 466 ENTQTKLEHARIKELEQSLLFEKTKADKLQRELEDTRVATVSEKSRIMELEKDLALRVQEVAELRRRL-ESNKPAGDVDM 544
Cdd:pfam02463 172 KEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIdLLQELLRDEQE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 545 SLSLLQEISSLQEKLEVTRTDHQREITSLKEHFGAREETHQKEIKALYTATEKLSKENESLKSKLEHANKENSdvialwk 624
Cdd:pfam02463 252 EIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKK------- 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 625 sKLETAIASHQQAMEELKVSFSKGLGTETAEFAELKTQIEKMRLDYQHEIENLQNQQdsERAAHAKEMEALRAKLMKVIK 704
Cdd:pfam02463 325 -KAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKK--LESERLSSAAKLKEEELELKS 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 705 EKENSLEAIRSKLDKAEDQHLVEMEDTLNKLQEAEikvKELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDALRKASS 784
Cdd:pfam02463 402 EEEKEAQLLLELARQLEDLLKEEKKEELEILEEEE---ESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQ 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 785 EGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKltnlqenlsevsqVKETLEKELQILKEKFAEAS 864
Cdd:pfam02463 479 LVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRII-------------SAHGRLGDLGVAVENYKVAI 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 865 EEAVSVQRSmQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQL 944
Cdd:pfam02463 546 STAVIVEVS-ATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKV 624
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 945 TKMNDELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQE 1024
Cdd:pfam02463 625 VEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKK 704
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1025 LKARYERATSETKTKHEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQADKAKAAQTAEDAMQIMEQMTKEKTE 1104
Cdd:pfam02463 705 EQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTE 784
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1105 TLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAE 1184
Cdd:pfam02463 785 KLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEIT 864
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1185 ELGRSRDEVTSHQKLEEERSVLNNQLLEMKKRESKFIKDADEEKASLQKSISITSALL-TEKDAELEKLRNEVTVLRGEN 1263
Cdd:pfam02463 865 KEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERiKEEAEILLKYEEEPEELLLEE 944
|
810 820 830
....*....|....*....|....*....|...
gi 530401713 1264 ASAKSLhsvvqtLESDKVKLELKVKNLELQLKE 1296
Cdd:pfam02463 945 ADEKEK------EENNKEEEEERNKRLLLAKEE 971
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
353-933 |
5.28e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 80.87 E-value: 5.28e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 353 LQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDqhvlELEAKMDQLRTMVEAADREKVELLNQLE 432
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELE----ELEAELEELESRLEELEEQLETLRSKVA 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 433 EEKRKVEDLQFRVEEESITKGDLE-QKSQISEDPENTQTKLEHARIKELEQSLLFEKTKADKLQRELEDTRVATVSEKSR 511
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARLERLEdRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREE 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 512 IMELEKDLALRVQEVAELRRRLES----------------------NKPAGDVDMSLSLL-------------------- 549
Cdd:TIGR02168 470 LEEAEQALDAAERELAQLQARLDSlerlqenlegfsegvkallknqSGLSGILGVLSELIsvdegyeaaieaalggrlqa 549
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 550 ----------QEISSLQEK-------LEVTRTDHqREITSLKEHFGAREETHQKEIKALYTATEKLSKE----------N 602
Cdd:TIGR02168 550 vvvenlnaakKAIAFLKQNelgrvtfLPLDSIKG-TEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAlsyllggvlvV 628
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 603 ESLKSKLEHANKENSD---------------VIALWKSKLETAIASHQQAMEELKvsfskglgTETAEFAELKTQIEKMR 667
Cdd:TIGR02168 629 DDLDNALELAKKLRPGyrivtldgdlvrpggVITGGSAKTNSSILERRREIEELE--------EKIEELEEKIAELEKAL 700
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 668 LDYQHEIENLQNQQDSERAAHAKEMEALRA--KLMKVIKEKENSLEAIRSKLDKAEDQHLVEMEDTLNKLQEAEIKVKEL 745
Cdd:TIGR02168 701 AELRKELEELEEELEQLRKELEELSRQISAlrKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA 780
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 746 EVLQAKCNEQtkvIDNFTSQLKATEEKLLDL----DALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSI 821
Cdd:TIGR02168 781 EAEIEELEAQ---IEQLKEELKALREALDELraelTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESL 857
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 822 TRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLREN 901
Cdd:TIGR02168 858 AAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVR 937
|
650 660 670
....*....|....*....|....*....|...
gi 530401713 902 LADMEAKFREKDEREEQLIKAKE-KLENDIAEI 933
Cdd:TIGR02168 938 IDNLQERLSEEYSLTLEEAEALEnKIEDDEEEA 970
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
373-1162 |
7.25e-15 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 80.50 E-value: 7.25e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 373 LERAEVAKATSHVGEIEQELALARDGHDqhvlELEAKMDQLRTMVEaadrEKVELLNQLEEEKRKVEdlqfRVEEESITK 452
Cdd:TIGR02169 153 VERRKIIDEIAGVAEFDRKKEKALEELE----EVEENIERLDLIID----EKRQQLERLRREREKAE----RYQALLKEK 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 453 GDLEQKSQISEDPEN-TQTKLEHARIKELEQSLLFEKTKADKLQRELEDTRVATVSEKSRIMELEKDLALRVQ-EVAELR 530
Cdd:TIGR02169 221 REYEGYELLKEKEALeRQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKeKIGELE 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 531 RRLESNKPAgdVDMSLSLLQEISSLQEKLEVTRTDHQREITSLKEhfgaREETHQKEIKALYTATEKLSKENESLKSKLE 610
Cdd:TIGR02169 301 AEIASLERS--IAEKERELEDAEERLAKLEAEIDKLLAEIEELER----EIEEERKRRDKLTEEYAELKEELEDLRAELE 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 611 HANKENsdviALWK---SKLETAIASHQQAMEELKVSFSKGLGTE---TAEFAELKTQIEKmrldyqheIENLQNQQDSE 684
Cdd:TIGR02169 375 EVDKEF----AETRdelKDYREKLEKLKREINELKRELDRLQEELqrlSEELADLNAAIAG--------IEAKINELEEE 442
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 685 RAAHAKEMEALRAKLMKVIKEK---ENSLEAIRSKLDKAEDqhlvEMEDTLNKLQEAEIKVKELEVLQAKCNEQTKVIDN 761
Cdd:TIGR02169 443 KEDKALEIKKQEWKLEQLAADLskyEQELYDLKEEYDRVEK----ELSKLQRELAEAEAQARASEERVRGGRAVEEVLKA 518
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 762 -------FTSQLKATEEK----------------LLDLDALRKASSEGKSEMK----------KLR-------------- 794
Cdd:TIGR02169 519 siqgvhgTVAQLGSVGERyataievaagnrlnnvVVEDDAVAKEAIELLKRRKagratflplnKMRderrdlsilsedgv 598
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 795 -----------QQLEAAEKQI-KHLEIEKNAESS------------------KASSIT---RELQGRELKLTNLQENLSE 841
Cdd:TIGR02169 599 igfavdlvefdPKYEPAFKYVfGDTLVVEDIEAArrlmgkyrmvtlegelfeKSGAMTggsRAPRGGILFSRSEPAELQR 678
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 842 VSQVKETLEKELQILKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIK 921
Cdd:TIGR02169 679 LRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKS 758
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 922 AKEKLENDIAEIMKMSGDNSSQLTKMNDELRlkERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQEAAKkheeek 1001
Cdd:TIGR02169 759 ELKELEARIEELEEDLHKLEEALNDLEARLS--HSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEY------ 830
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1002 kelerklsdLEKKMETSHNQCQELKAR---YERATSETKTKHEEI---LQNLQKTLLDTEDKLKGAREENSGLLQELEEL 1075
Cdd:TIGR02169 831 ---------LEKEIQELQEQRIDLKEQiksIEKEIENLNGKKEELeeeLEELEAALRDLESRLGDLKKERDELEAQLREL 901
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1076 RKQADKAKAaqTAEDAMQIMEQMT--------------------KEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVE 1135
Cdd:TIGR02169 902 ERKIEELEA--QIEKKRKRLSELKaklealeeelseiedpkgedEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQ 979
|
890 900 910
....*....|....*....|....*....|....*..
gi 530401713 1136 E----------LNKSKELLTVENQKMEEFRKEIETLK 1162
Cdd:TIGR02169 980 EyeevlkrldeLKEKRAKLEEERKAILERIEEYEKKK 1016
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
407-1232 |
9.20e-15 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 79.78 E-value: 9.20e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 407 EAKMDQLRTMVEAADREKVELLnqLEEEKRKVEDLQFRVEEESitKGDLEQKSQISEDPENTQTKLEHARIKEleQSLLF 486
Cdd:pfam15921 58 EVELDSPRKIIAYPGKEHIERV--LEEYSHQVKDLQRRLNESN--ELHEKQKFYLRQSVIDLQTKLQEMQMER--DAMAD 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 487 EKTKADKLQRELEDTRVATVSEKSRIMELEKD-LALRVQEVAELRRRLESNKpagdvdmslSLLQEISSLQEKLEVTRTD 565
Cdd:pfam15921 132 IRRRESQSQEDLRNQLQNTVHELEAAKCLKEDmLEDSNTQIEQLRKMMLSHE---------GVLQEIRSILVDFEEASGK 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 566 HQREITSLKE-HFGAREETHQKEIKALYTATEKLSKENESLKSKLEHANKENsdvialwKSKLETAIASHQQAMEELKVS 644
Cdd:pfam15921 203 KIYEHDSMSTmHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSES-------QNKIELLLQQHQDRIEQLISE 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 645 FSKGLGTETAEFAELKTQIEKMrldyQHEIENLQNQQDSERAAHakemealraklMKVIKEKENSLEAIRSKLDKAEDQH 724
Cdd:pfam15921 276 HEVEITGLTEKASSARSQANSI----QSQLEIIQEQARNQNSMY-----------MRQLSDLESTVSQLRSELREAKRMY 340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 725 lvemEDTLNKLQeaeikvKELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDAlrkassegksEMKKLRQQLEAAEKQI 804
Cdd:pfam15921 341 ----EDKIEELE------KQLVLANSELTEARTERDQFSQESGNLDDQLQKLLA----------DLHKREKELSLEKEQN 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 805 KHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEV-SQVKETLEKELQILKEKfAEASEEAVSVQRSMQETVNKLHQ 883
Cdd:pfam15921 401 KRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMkSECQGQMERQMAAIQGK-NESLEKVSSLTAQLESTKEMLRK 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 884 KEEQFNMLSSDLEKLRENLADMEAKFREKDEREE----QLIKAKEKLENDIAEImkmsgdnsSQLTKMNDELRLKERDVE 959
Cdd:pfam15921 480 VVEELTAKKMTLESSERTVSDLTASLQEKERAIEatnaEITKLRSRVDLKLQEL--------QHLKNEGDHLRNVQTECE 551
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 960 ELQLKLTKANENASFLQKSIEDMTVKAEQSQQEAAKKHEEEkkelerklSDLEKKMETSHNQCQELKARYERATSETKTK 1039
Cdd:pfam15921 552 ALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEK--------AQLEKEINDRRLELQEFKILKDKKDAKIREL 623
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1040 HEEILQ-NLQKTLL-----DTEDKLKGAREENSGLLQELEELRKQADkakaaqTAEDAMQIMEQMTKEKTETLASLEDTK 1113
Cdd:pfam15921 624 EARVSDlELEKVKLvnagsERLRAVKDIKQERDQLLNEVKTSRNELN------SLSEDYEVLKRNFRNKSEEMETTTNKL 697
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1114 QTNAK-LQNELDTLKeNNLKNVEELNKS--------KELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAE 1184
Cdd:pfam15921 698 KMQLKsAQSELEQTR-NTLKSMEGSDGHamkvamgmQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQ 776
|
810 820 830 840
....*....|....*....|....*....|....*....|....*...
gi 530401713 1185 ELGRSrdeVTSHQKLEEERSVLNNQLLEMKKRESKFikDADEEKASLQ 1232
Cdd:pfam15921 777 ELSTV---ATEKNKMAGELEVLRSQERRLKEKVANM--EVALDKASLQ 819
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
492-1162 |
1.33e-14 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 79.34 E-value: 1.33e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 492 DKLQRELEDTRVATVSEKSRIMELEKDLALRVQEVAELRRRLEsnKPAGDVDMSLSLLQEISSLQEKLEvtrtDHQREIT 571
Cdd:PRK03918 175 KRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELP--ELREELEKLEKEVKELEELKEEIE----ELEKELE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 572 SLKEHFGAREEthqkEIKALYTATEKLSKENESLKSKLEHANKensdvialwkskletaiashqqaMEELKVSFSKgLGT 651
Cdd:PRK03918 249 SLEGSKRKLEE----KIRELEERIEELKKEIEELEEKVKELKE-----------------------LKEKAEEYIK-LSE 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 652 ETAEFAELKTQIEKMRLDYQHEIENLQnqqdseraahakemealraKLMKVIKEKENSLEAIRSKLDKAEDQhLVEMEDT 731
Cdd:PRK03918 301 FYEEYLDELREIEKRLSRLEEEINGIE-------------------ERIKELEEKEERLEELKKKLKELEKR-LEELEER 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 732 LNKLQEAEIKVKELEVLQAKCNEQTKvidnftsqlkatEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQIKhlEIEK 811
Cdd:PRK03918 361 HELYEEAKAKKEELERLKKRLTGLTP------------EKLEKELEELEKAKEEIEEEISKITARIGELKKEIK--ELKK 426
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 812 NAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQ--RSMQETVNKLHQKEEQFN 889
Cdd:PRK03918 427 AIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEkvLKKESELIKLKELAEQLK 506
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 890 MLSSDLEKLreNLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGdnssqLTKMNDELRLKERDVEELQLKLTKAN 969
Cdd:PRK03918 507 ELEEKLKKY--NLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEE-----LKKKLAELEKKLDELEEELAELLKEL 579
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 970 ENASFlqKSIEdmtvkaeqsqqeaakkheeekkelerklsDLEKKMetshnqcQELKARYERATSETKTKHEeiLQNLQK 1049
Cdd:PRK03918 580 EELGF--ESVE-----------------------------ELEERL-------KELEPFYNEYLELKDAEKE--LEREEK 619
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1050 TLLDTEDKLKGAREENSGLLQELEELRKQADKAKAAQTAEDAMQIMEQMTkEKTETLASLEDTKQTNAKLQNE----LDT 1125
Cdd:PRK03918 620 ELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYL-ELSRELAGLRAELEELEKRREEikktLEK 698
|
650 660 670
....*....|....*....|....*....|....*..
gi 530401713 1126 LKEnNLKNVEELNKSKELLTVENQKMEEFRKEIETLK 1162
Cdd:PRK03918 699 LKE-ELEEREKAKKELEKLEKALERVEELREKVKKYK 734
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
336-933 |
1.11e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.51 E-value: 1.11e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 336 LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARdghdQHVLELEAKMDQLRT 415
Cdd:COG1196 248 LEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLE----ERRRELEERLEELEE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 416 MVEAADREKVELLNQLEEEKRKVEDLQfrvEEESITKGDLEQKSQISEDPENTQTKLEHARIKELEQSLLFEKTKADKLQ 495
Cdd:COG1196 324 ELAELEEELEELEEELEELEEELEEAE---EELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAA 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 496 RELEDTRVATVSEKSRIMELEKDLALRVQEVAELRRRLESNKPAGDVdmsLSLLQEISSLQEKLEVTRTDHQREITSLKE 575
Cdd:COG1196 401 QLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA---AEEEAELEEEEEALLELLAELLEEAALLEA 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 576 HFGAREETHQKEIKALYTATEKLSKENESLKSKLEHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKGLGTETAE 655
Cdd:COG1196 478 ALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDE 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 656 FAELKTQIEKMRLDYQHEIENLqnqqDSERAAHAKEMEALRAKLMKVIKEKENSLEAIRSKLDKAEDQHLVEMEDTLNKL 735
Cdd:COG1196 558 VAAAAIEYLKAAKAGRATFLPL----DKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLE 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 736 QEAEIKVKELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQikhlEIEKNAES 815
Cdd:COG1196 634 AALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLA----EEEEEREL 709
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 816 SKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQrsmQETVNKLHQKEEQF---NMLS 892
Cdd:COG1196 710 AEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEEL---ERELERLEREIEALgpvNLLA 786
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 530401713 893 sdLEKLREnladMEAKFREKDEREEQLIKAKEKLENDIAEI 933
Cdd:COG1196 787 --IEEYEE----LEERYDFLSEQREDLEEARETLEEAIEEI 821
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
352-933 |
1.36e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.13 E-value: 1.36e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 352 ALQEALKEKQqhIEQLLAERDLERAEVAKATSHVGEIEQELALARdghdQHVLELEAKMDQLRTMVEAADREKVELLNQL 431
Cdd:COG1196 217 ELKEELKELE--AELLLLKLRELEAELEELEAELEELEAELEELE----AELAELEAELEELRLELEELELELEEAQAEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 432 EEEKRKVEDLQFRVEEESITKGDLEQKSQ---ISEDPENTQTKLEHARIKELEQSLLFEKTKADKLQRELEDTRVATVSE 508
Cdd:COG1196 291 YELLAELARLEQDIARLEERRRELEERLEeleEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 509 KSRIMELEKDL-ALRVQEVAELRRRLESNKPAgdvdmsLSLLQEISSLQEKLEVTRTDHQREITSLKEHFGAREETHQKE 587
Cdd:COG1196 371 EAELAEAEEELeELAEELLEALRAAAELAAQL------EELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEAL 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 588 IKALyTATEKLSKENESLKSKLEHANKEnsdvIALWKSKLETAIASHQQAMEELKVSFSKGLGTET-AEFAELKTQIEKM 666
Cdd:COG1196 445 EEAA-EEEAELEEEEEALLELLAELLEE----AALLEAALAELLEELAEAAARLLLLLEAEADYEGfLEGVKAALLLAGL 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 667 RLDYQHEIENLQNQQDSERAAHAkemeALRAKLMKVIKEKENSLEAIRSKLDKAEDQHLVEMEDTLNKLQEAEIKVKELE 746
Cdd:COG1196 520 RGLAGAVAVLIGVEAAYEAALEA----ALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARG 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 747 VLQAKCNEQTKVIDNFTSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQikhLEIEKNAESSKASSITRELQ 826
Cdd:COG1196 596 AIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLE---GEGGSAGGSLTGGSRRELLA 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 827 GRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADME 906
Cdd:COG1196 673 ALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEA 752
|
570 580
....*....|....*....|....*..
gi 530401713 907 AKFREKDEREEQLIKAKEKLENDIAEI 933
Cdd:COG1196 753 LEELPEPPDLEELERELERLEREIEAL 779
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
684-1291 |
2.72e-13 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 75.08 E-value: 2.72e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 684 ERAAHAkemealRAKLMKVIKEKENSLEAIRSKLDKAEDQHLVEmedtlnKLQEAEIKVKELEVLQAKCNEQ----TKVI 759
Cdd:PRK02224 169 ERASDA------RLGVERVLSDQRGSLDQLKAQIEEKEEKDLHE------RLNGLESELAELDEEIERYEEQreqaRETR 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 760 DNFTSQLKATEEKLLDLDALRKASSE--------------GKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITREL 825
Cdd:PRK02224 237 DEADEVLEEHEERREELETLEAEIEDlretiaeterereeLAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARR 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 826 QGRELKLTNLQENLSEVSQVKETLEKELQILKEKFA-------EASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKL 898
Cdd:PRK02224 317 EELEDRDEELRDRLEECRVAAQAHNEEAESLREDADdleeraeELREEAAELESELEEAREAVEDRREEIEELEEEIEEL 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 899 RENLADMEAKFREKDEREEQLIKAKEKLENDIAEimkmsgdnssqltkMNDELRLKERDVEELQLKLTKANenasflqks 978
Cdd:PRK02224 397 RERFGDAPVDLGNAEDFLEELREERDELREREAE--------------LEATLRTARERVEEAEALLEAGK--------- 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 979 iedmtvKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYERATSETKTkhEEILQNLQKTLLDTEDKL 1058
Cdd:PRK02224 454 ------CPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEA--EDRIERLEERREDLEELI 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1059 KGAREENSGLLQELEELRKQADKAKA-AQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKEnnlknveel 1137
Cdd:PRK02224 526 AERRETIEEKRERAEELRERAAELEAeAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRT--------- 596
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1138 nkSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRdevtshqkLEEERSVLNNQLLEMKKRE 1217
Cdd:PRK02224 597 --LLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEAR--------IEEAREDKERAEEYLEQVE 666
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 530401713 1218 SKfIKDADEEKASLQKSI-SITSALltekdAELEKLRNEVTVLRGENASAKSLHSVVQTLES--DKVKLELKVKNLE 1291
Cdd:PRK02224 667 EK-LDELREERDDLQAEIgAVENEL-----EELEELRERREALENRVEALEALYDEAEELESmyGDLRAELRQRNVE 737
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
212-812 |
4.22e-13 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 73.95 E-value: 4.22e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 212 LKIGDRVLVGGTKaGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLF-----------APVHKVTK 280
Cdd:COG5244 4 LSVNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIFirpdddsllngNAAYEKIK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 281 IGFPSTTPAKAKANAVRRVMATTSASLKRSPSASSLSSMSSVASSVSSRPSRTGLLTETSSRYARKISGTTALQEALKEK 360
Cdd:COG5244 83 GGLVCESKGMDKDGEIKQENHEDRIHFEESKIRRLEETIEALKSTEKEEIVELRRENEELDKINLSLRERISSEEPELNK 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 361 QQHIEQLLAERDL---ERAEVAKATSHVGEIEQELALARDGHDQHVLELEAK--MDQLRTMVEAADREKVELLNQLEEEK 435
Cdd:COG5244 163 DGSKLSYDELKEFveeSRVQVYDMVELVSDISETLNRNGSIQRSSVRECERSniHDVLFLVNGILDGVIDELNGELERLR 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 436 RKVEDLQ----FRVEEESITKGDLEQKSQISEDPENTQT-KLEHARIKELEQSL--LFEKTKADKLQ--RELEDTRVATV 506
Cdd:COG5244 243 RQLVSLMsshgIEVEENSRLKATLEKFQSLELKVNTLQEeLYQNKLLKKFYQIYepFAQAALSSQLQylAEVIESENFGK 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 507 SEKSRIMELEKDL-----ALRVQEVAELRRRLES------NKPAGDVDMSLSLLQEISSLQE---KLEVTRTDHQREITS 572
Cdd:COG5244 323 LENIEIHIILKVLssisyALHIYTIKNTPDHLETtlqcfvNIAPISMWLSEFLQRKFSSKQEtafSICQFLEDNKDVTLI 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 573 LKEHFGAREETHQKEIKALYTATEklSKENESL---KSKLEHANKENSDVIALWKSKLETAIASHQQAMEE---LKVSFS 646
Cdd:COG5244 403 LKILHPILETTVPKLLAFLRTNSN--FNDNDTLcliGSLYEIARIDKLIGKEEISKQDNRLFLYPSCDITLssiLTILFS 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 647 KGLgtetAEFAELKTQIEK--MRLDYQHEIENLQNQQDSERAAHAKEMEALRAKLMKVIKEKENSL-EAIRSKLDKAEDQ 723
Cdd:COG5244 481 DKL----EVFFQGIESLLEniTIFPEQPSQQTSDSENIKENSLLSDRLNEENIRLKEVLVQKENMLtEETKIKIIIGRDL 556
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 724 HLVEMEDTLNKLQEaeikvkELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQ 803
Cdd:COG5244 557 ERKTLEENIKTLKV------ELNNKNNKLKEENFNLVNRLKNMELKLYQIKDNNTLNKIYLDLVSEIMELRETIRRQIKE 630
|
....*....
gi 530401713 804 IKHLEIEKN 812
Cdd:COG5244 631 QKRVSIDFS 639
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
369-967 |
7.08e-13 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 74.02 E-value: 7.08e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 369 AERDLERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEE 448
Cdd:PTZ00121 1324 AEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED 1403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 449 SITKGDLEQKSQISEDPENTQTKLEHARIKELEQSLLFEKTKADKLQRELEDTRVA----TVSEKSRIMELEKDLALRVQ 524
Cdd:PTZ00121 1404 KKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAeeakKKAEEAKKADEAKKKAEEAK 1483
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 525 EVAELRRRL-ESNKPAGDVDMSLSLLQEISSLQEKLEVTRTDHQREITSLKEHFGAREETHQKEIKALYTAtEKLSKENE 603
Cdd:PTZ00121 1484 KADEAKKKAeEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKA-EELKKAEE 1562
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 604 slKSKLEHANKENSDVIALWKSKLETAIASHQQAMEELKV-SFSKGLGTETAEFAElKTQIEKMRLDYQHEIENLQNQQD 682
Cdd:PTZ00121 1563 --KKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLyEEEKKMKAEEAKKAE-EAKIKAEELKKAEEEKKKVEQLK 1639
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 683 SERAAHAKEMEALRAKLMKVIKEKENslEAIRSKLDKAEDQHLVEMEDTLNKLQEAEIK----VKELEVLQAKCNEQTKV 758
Cdd:PTZ00121 1640 KKEAEEKKKAEELKKAEEENKIKAAE--EAKKAEEDKKKAEEAKKAEEDEKKAAEALKKeaeeAKKAEELKKKEAEEKKK 1717
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 759 IDNFTsqlKATEEKLLDLDALRKASSEGKSEMKKLRQQlEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQEN 838
Cdd:PTZ00121 1718 AEELK---KAEEENKIKAEEAKKEAEEDKKKAEEAKKD-EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRR 1793
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 839 LSEVSQVKETLEKELQIL-------------KEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDlEKLRENLADM 905
Cdd:PTZ00121 1794 MEVDKKIKDIFDNFANIIeggkegnlvindsKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGE-DGNKEADFNK 1872
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 530401713 906 EAKFREKDEREEQLIKAKEKLENDIAEIM----KMSGDNSSQLTKMNDELRLKERDVEELQLKLTK 967
Cdd:PTZ00121 1873 EKDLKEDDEEEIEEADEIEKIDKDDIEREipnnNMAGKNNDIIDDKLDKDEYIKRDAEETREEIIK 1938
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
357-906 |
3.34e-12 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 71.69 E-value: 3.34e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 357 LKEKQQHIEQLLAERDLE----RAEVAKATSHVGEIEQELALARDG-------HDQHVLELEAKMDQLRTMVEAADREKV 425
Cdd:pfam15921 262 LQQHQDRIEQLISEHEVEitglTEKASSARSQANSIQSQLEIIQEQarnqnsmYMRQLSDLESTVSQLRSELREAKRMYE 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 426 ELLNQLEEekrkvedlQFRVEEESITKGDLEqKSQISEDPENTQTKLE------HARIKELeqSLLFEKTK--------- 490
Cdd:pfam15921 342 DKIEELEK--------QLVLANSELTEARTE-RDQFSQESGNLDDQLQklladlHKREKEL--SLEKEQNKrlwdrdtgn 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 491 ---ADKLQRELEDTRVATVSEKSRIM--------ELEKDLAL------RVQEVAELRRRLESNKpagdvDMSLSLLQEIS 553
Cdd:pfam15921 411 sitIDHLRRELDDRNMEVQRLEALLKamksecqgQMERQMAAiqgkneSLEKVSSLTAQLESTK-----EMLRKVVEELT 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 554 SLQEKLEVTRTDHQREITSLKEHFGAREETHqKEIKALYTATEKLSKENESLKSKLEHANKENSDVIAL-----WKSKLE 628
Cdd:pfam15921 486 AKKMTLESSERTVSDLTASLQEKERAIEATN-AEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALklqmaEKDKVI 564
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 629 TAIASHQQAMEELKVSFSKGLGTETAEFAELKTQIEKMRLDYQhEIENLQNQQDS---ERAAHAKEMEALRAKLMKVIKE 705
Cdd:pfam15921 565 EILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQ-EFKILKDKKDAkirELEARVSDLELEKVKLVNAGSE 643
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 706 KENSLEAIRSKldkaEDQHLVEMEDTLNKLQEAEikvKELEVLQAKCNEQTKVIDNFTSQLKAteeklldldalrkasse 785
Cdd:pfam15921 644 RLRAVKDIKQE----RDQLLNEVKTSRNELNSLS---EDYEVLKRNFRNKSEEMETTTNKLKM----------------- 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 786 gksEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASE 865
Cdd:pfam15921 700 ---QLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQ 776
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 530401713 866 EAVSVQRSMQETVNKLHqkeeqfnMLSSDLEKLRENLADME 906
Cdd:pfam15921 777 ELSTVATEKNKMAGELE-------VLRSQERRLKEKVANME 810
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
894-1303 |
3.37e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 71.25 E-value: 3.37e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 894 DLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANENAS 973
Cdd:PRK03918 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 974 FL-QKSIEDMTVKAE-QSQQEAAKKHEEEKKELERKLSDLEKKMETShNQCQELKARYERaTSETKTKHEEILQNLQKTL 1051
Cdd:PRK03918 239 EIeELEKELESLEGSkRKLEEKIRELEERIEELKKEIEELEEKVKEL-KELKEKAEEYIK-LSEFYEEYLDELREIEKRL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1052 LDTEDKLKGAREENSGL------LQELEELRKQADKAKA-----AQTAEDAMQIMEQMTKEKTETlasledTKQTNAKLQ 1120
Cdd:PRK03918 317 SRLEEEINGIEERIKELeekeerLEELKKKLKELEKRLEeleerHELYEEAKAKKEELERLKKRL------TGLTPEKLE 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1121 NELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEEN-----VKLAEELGRSRDEVts 1195
Cdd:PRK03918 391 KELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHrkellEEYTAELKRIEKEL-- 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1196 hQKLEEERSVLNNQLLEMKK---RESKFIKD---ADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKSL 1269
Cdd:PRK03918 469 -KEIEEKERKLRKELRELEKvlkKESELIKLkelAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKE 547
|
410 420 430
....*....|....*....|....*....|....
gi 530401713 1270 HSVVQTLESDKVKLELKVKNLELQLKENKRQLSS 1303
Cdd:PRK03918 548 LEKLEELKKKLAELEKKLDELEEELAELLKELEE 581
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
690-1251 |
3.57e-12 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 71.20 E-value: 3.57e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 690 KEMEALRAKLMKVIKEKENSLEAIRSKLDKAEDQHLvEMEDTLNKLqEAEIKVKELEVLQAKCNEQTKVIDNFTSQLKAT 769
Cdd:TIGR04523 134 KENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKE-ELENELNLL-EKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQ 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 770 EEKLL--DLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQVKE 847
Cdd:TIGR04523 212 KNKSLesQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLN 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 848 TLEKELQILKEKFA-----EASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKA 922
Cdd:TIGR04523 292 QLKSEISDLNNQKEqdwnkELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 923 KEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQsQQEAAKKHEEEKK 1002
Cdd:TIGR04523 372 IEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIK-NNSEIKDLTNQDS 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1003 ELERKLSDLEKKMETSHNQCQELKARYERATSEtktkheeiLQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQADKA 1082
Cdd:TIGR04523 451 VKELIIKNLDNTRESLETQLKVLSRSINKIKQN--------LEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSL 522
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1083 KAAQTA-EDAMQIMEQMTKEKTETLASLEDTKQTNA------KLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFR 1155
Cdd:TIGR04523 523 KEKIEKlESEKKEKESKISDLEDELNKDDFELKKENlekeidEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLI 602
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1156 KEIETLKQAAAQKSQQLSALQEENVKLAEELgrsRDEVTSHQKLEEERSVLNNQLLEMKKRESKFIKDADEEKASLQKSI 1235
Cdd:TIGR04523 603 KEIEEKEKKISSLEKELEKAKKENEKLSSII---KNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDII 679
|
570
....*....|....*.
gi 530401713 1236 SITSALLTEKDAELEK 1251
Cdd:TIGR04523 680 ELMKDWLKELSLHYKK 695
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
698-1291 |
5.32e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 70.86 E-value: 5.32e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 698 KLMKVIKEKENSLEAIRSKLDKAEDQHlvemedtlNKLQEAEikvKELEvlqakcnEQTKVIDNFTSQLKATEEKLldld 777
Cdd:PRK03918 166 NLGEVIKEIKRRIERLEKFIKRTENIE--------ELIKEKE---KELE-------EVLREINEISSELPELREEL---- 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 778 alRKASSEgKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEK--ELQI 855
Cdd:PRK03918 224 --EKLEKE-VKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEyiKLSE 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 856 LKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENdIAEIMK 935
Cdd:PRK03918 301 FYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEE-LERLKK 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 936 MSGDNSsqLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQ-----------SQQEAAKKHEEEKKEL 1004
Cdd:PRK03918 380 RLTGLT--PEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEElkkakgkcpvcGRELTEEHRKELLEEY 457
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1005 ERKLSDLEKKMETSHNQCQELKARYERATSETKTKHEEI-LQNLQKTLLDTEDKLKG-AREENSGLLQELEELRKQADKA 1082
Cdd:PRK03918 458 TAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIkLKELAEQLKELEEKLKKyNLEELEKKAEEYEKLKEKLIKL 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1083 KAAQ-TAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNEldtLKENNLKNVEELNKskelltvENQKMEEFRKEIETL 1161
Cdd:PRK03918 538 KGEIkSLKKELEKLEELKKKLAELEKKLDELEEELAELLKE---LEELGFESVEELEE-------RLKELEPFYNEYLEL 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1162 KQAaaqkSQQLSALQEENVKLAEELGRSRDEVtshQKLEEERSVLNNQLLEMKKresKFIKDADEEKASLQKSISITSAL 1241
Cdd:PRK03918 608 KDA----EKELEREEKELKKLEEELDKAFEEL---AETEKRLEELRKELEELEK---KYSEEEYEELREEYLELSRELAG 677
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 530401713 1242 LTEKDAELEKLRNEVTvlrgenASAKSLHSVVQTLESDKVKLELKVKNLE 1291
Cdd:PRK03918 678 LRAELEELEKRREEIK------KTLEKLKEELEEREKAKKELEKLEKALE 721
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
952-1270 |
6.67e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.35 E-value: 6.67e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 952 RLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQsqqeaakkheeekkelerklsdLEKKMETSHNQCQELKARYER 1031
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEE----------------------LEAELAELEAELEELRLELEE 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1032 ATSETKTKHEEiLQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQADKAKAAQTAEDamQIMEQMTKEKTETLASLED 1111
Cdd:COG1196 279 LELELEEAQAE-EYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELE--EELEELEEELEEAEEELEE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1112 TKQTNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRD 1191
Cdd:COG1196 356 AEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEE 435
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 530401713 1192 EVTSHQKLEEERSVLNNQLLEMKKRESKFIKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKSLH 1270
Cdd:COG1196 436 EEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAAL 514
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
60-121 |
1.38e-11 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 69.33 E-value: 1.38e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 530401713 60 VGERVWVNGNKpGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRP 121
Cdd:COG5244 6 VNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIFIRP 66
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
356-1078 |
1.43e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 69.71 E-value: 1.43e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 356 ALKEKQQHIEQ--LLAERDLERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLee 433
Cdd:TIGR02169 215 ALLKEKREYEGyeLLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRV-- 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 434 eKRKVEDLQFRVEEesiTKGDLEQKSQISEDPENTQTKLE------HARIKELEQSLLFEKTKADKLQRELEDTRVATVS 507
Cdd:TIGR02169 293 -KEKIGELEAEIAS---LERSIAEKERELEDAEERLAKLEaeidklLAEIEELEREIEEERKRRDKLTEEYAELKEELED 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 508 EKSRIMELEKDLALRVQEVAELRRRLESNKPAGDvdmslSLLQEISSLQE---KLEVTRTDHQREITSLKE---HFGARE 581
Cdd:TIGR02169 369 LRAELEEVDKEFAETRDELKDYREKLEKLKREIN-----ELKRELDRLQEelqRLSEELADLNAAIAGIEAkinELEEEK 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 582 ETHQKEIKA----LYTATEKLSKENESL---KSKLEHANKENSDVialwKSKLETAIASHQQAMEELKVSFS--KGLGTE 652
Cdd:TIGR02169 444 EDKALEIKKqewkLEQLAADLSKYEQELydlKEEYDRVEKELSKL----QRELAEAEAQARASEERVRGGRAveEVLKAS 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 653 TAEFAELKTQIEKMRLDYQHEIE-----NLQN--QQDSERAAHA----KEMEALRA------------KLMKVIKEKE-- 707
Cdd:TIGR02169 520 IQGVHGTVAQLGSVGERYATAIEvaagnRLNNvvVEDDAVAKEAiellKRRKAGRAtflplnkmrderRDLSILSEDGvi 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 708 ---------------------------NSLEAIRSKLDKAE----DQHLVE---------------------MEDTLNKL 735
Cdd:TIGR02169 600 gfavdlvefdpkyepafkyvfgdtlvvEDIEAARRLMGKYRmvtlEGELFEksgamtggsraprggilfsrsEPAELQRL 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 736 QEAEIKVK-ELEVLQAKCNEQTKVIDNFTSQLKATEEKLldlDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAE 814
Cdd:TIGR02169 680 RERLEGLKrELSSLQSELRRIENRLDELSQELSDASRKI---GEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENV 756
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 815 SSKASSITRELQGRELKLTNLQENLS----------------EVSQVKET---LEKELQILKEKFAEASEEAVSVQRSMQ 875
Cdd:TIGR02169 757 KSELKELEARIEELEEDLHKLEEALNdlearlshsripeiqaELSKLEEEvsrIEARLREIEQKLNRLTLEKEYLEKEIQ 836
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 876 ETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEimkmsgdnssqltkMNDELRLKE 955
Cdd:TIGR02169 837 ELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDE--------------LEAQLRELE 902
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 956 RDVEELQLKLTKANENASFLQKSIEdmTVKAEQSQQEAAKKHEEEKKELERKLSDLEKkmetshnQCQELKARYeRATSE 1035
Cdd:TIGR02169 903 RKIEELEAQIEKKRKRLSELKAKLE--ALEEELSEIEDPKGEDEEIPEEELSLEDVQA-------ELQRVEEEI-RALEP 972
|
810 820 830 840
....*....|....*....|....*....|....*....|...
gi 530401713 1036 TKTKHEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQ 1078
Cdd:TIGR02169 973 VNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
417-1218 |
2.07e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 68.94 E-value: 2.07e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 417 VEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEQKSQISEDPENTQTKLEHARIKELEQSLLFEKTKADKLQR 496
Cdd:TIGR02169 232 KEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIA 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 497 ELEDtRVATVSEKSRIMELEKDLALRvqEVAELRRRLESNKPAGDvdmslSLLQEISSLQEKLEVTRTDHQREITSLKEH 576
Cdd:TIGR02169 312 EKER-ELEDAEERLAKLEAEIDKLLA--EIEELEREIEEERKRRD-----KLTEEYAELKEELEDLRAELEEVDKEFAET 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 577 FgareethqKEIKALYTATEKLSKENESLK---SKLEHANKENSDVIALWKSKLETAIASHQQAMEELKvsfSKGLGTET 653
Cdd:TIGR02169 384 R--------DELKDYREKLEKLKREINELKrelDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKE---DKALEIKK 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 654 AEfAELKtQIEKMRLDYQHEIENLQNQQD---SERAAHAKEMEALRAKL----------MKVIKEKENSLEAIR---SKL 717
Cdd:TIGR02169 453 QE-WKLE-QLAADLSKYEQELYDLKEEYDrveKELSKLQRELAEAEAQAraseervrggRAVEEVLKASIQGVHgtvAQL 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 718 DKAEDQHLVEMEDTL-NKLQEAeikVKELEVLQAKCNEQTKvidnftsQLKATEEKLLDLDALRKASSEGKSEMKK---- 792
Cdd:TIGR02169 531 GSVGERYATAIEVAAgNRLNNV---VVEDDAVAKEAIELLK-------RRKAGRATFLPLNKMRDERRDLSILSEDgvig 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 793 -------LRQQLEAAEKQI-KHLEIEKNAESS------------------KASSIT---RELQGRELKLTNLQENLSEVS 843
Cdd:TIGR02169 601 favdlveFDPKYEPAFKYVfGDTLVVEDIEAArrlmgkyrmvtlegelfeKSGAMTggsRAPRGGILFSRSEPAELQRLR 680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 844 QVKETLEKELQILKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAK 923
Cdd:TIGR02169 681 ERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSEL 760
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 924 EKLENDIAEimkmsgdnssqltkmndelrlKERDVEELQLKLT--KANENASFLQKSIEDMT-VKAEQSQQEAAKkheee 1000
Cdd:TIGR02169 761 KELEARIEE---------------------LEEDLHKLEEALNdlEARLSHSRIPEIQAELSkLEEEVSRIEARL----- 814
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1001 kkelerklSDLEKKMETSHNQCQELkaryeratsetktkhEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQAD 1080
Cdd:TIGR02169 815 --------REIEQKLNRLTLEKEYL---------------EKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELE 871
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1081 KAKAAQtaEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKEN------NLKNVEELNKSKELLTVENQKMEEF 1154
Cdd:TIGR02169 872 ELEAAL--RDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRlselkaKLEALEEELSEIEDPKGEDEEIPEE 949
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1155 RKEIETLKQAAAQKSQQLSALQEENVK----LAEELGRSRDEVTSHQKLEEERSVLNNQL--LEMKKRES 1218
Cdd:TIGR02169 950 ELSLEDVQAELQRVEEEIRALEPVNMLaiqeYEEVLKRLDELKEKRAKLEEERKAILERIeeYEKKKREV 1019
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
578-1161 |
2.58e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 68.53 E-value: 2.58e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 578 GAREETHQKEIKALYTATEKLSKENESLKSKLEHANkENSDVIALWKSKLETAIASHQQAMEELkvsfskglgtetaefA 657
Cdd:PRK02224 191 QLKAQIEEKEEKDLHERLNGLESELAELDEEIERYE-EQREQARETRDEADEVLEEHEERREEL---------------E 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 658 ELKTQIEKMRLDYQheienlqnQQDSERAAHAKEMEALRAKLMKVIKEKENSLEaiRSKLDKAEDQHLVEMEDTLNklqe 737
Cdd:PRK02224 255 TLEAEIEDLRETIA--------ETEREREELAEEVRDLRERLEELEEERDDLLA--EAGLDDADAEAVEARREELE---- 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 738 aeikvKELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDA----LRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNA 813
Cdd:PRK02224 321 -----DRDEELRDRLEECRVAAQAHNEEAESLREDADDLEEraeeLREEAAELESELEEAREAVEDRREEIEELEEEIEE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 814 ESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASE--EAVSVQRSMQET-----VNKLHQKEE 886
Cdd:PRK02224 396 LRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEAllEAGKCPECGQPVegsphVETIEEDRE 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 887 QFNMLSSDLEKLRENLADMEAKFrekdEREEQLIKAKEKLENdiaeimkmSGDNSSQLTKMNDElrlKERDVEELQLKLT 966
Cdd:PRK02224 476 RVEELEAELEDLEEEVEEVEERL----ERAEDLVEAEDRIER--------LEERREDLEELIAE---RRETIEEKRERAE 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 967 KANENASFLQKSIEDMTVKAeQSQQEAAKKHEEEKKELERKLSDLEKKMEtSHNQCQELKARYERATSETKTKHEEiLQN 1046
Cdd:PRK02224 541 ELRERAAELEAEAEEKREAA-AEAEEEAEEAREEVAELNSKLAELKERIE-SLERIRTLLAAIADAEDEIERLREK-REA 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1047 LQKTLLDTEDKLKGAREENSGLLQELEELR---KQADKAKAAQTAEDAMQIMEQMTKEKTEtlasledtkqtnakLQNEL 1123
Cdd:PRK02224 618 LAELNDERRERLAEKRERKRELEAEFDEARieeAREDKERAEEYLEQVEEKLDELREERDD--------------LQAEI 683
|
570 580 590
....*....|....*....|....*....|....*...
gi 530401713 1124 DTLkENNLKNVEELNKSKELLTVENQKMEEFRKEIETL 1161
Cdd:PRK02224 684 GAV-ENELEELEELRERREALENRVEALEALYDEAEEL 720
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
582-1301 |
3.73e-11 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 67.82 E-value: 3.73e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 582 ETHQKEIKALYTATEKLSKENESLKSKLEHANKENSDVIA------LWKSKLETAIAS----------HQQAMEELKVSF 645
Cdd:pfam05483 109 QENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKennatrHLCNLLKETCARsaektkkyeyEREETRQVYMDL 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 646 SKGLGTETAEFAELKTQIEKMRLDYQHEIenlqnQQDSERAAHAKEmealraKLMKVIKEKENSLEAIRSKLDKAEDQhl 725
Cdd:pfam05483 189 NNNIEKMILAFEELRVQAENARLEMHFKL-----KEDHEKIQHLEE------EYKKEINDKEKQVSLLLIQITEKENK-- 255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 726 veMEDTLNKLQEAEIKVKELEvlqakcnEQTKVIDNFTSQLKATEEKLL-DLDALRKASSEGKSEMKKLRQQLEAAEKQI 804
Cdd:pfam05483 256 --MKDLTFLLEESRDKANQLE-------EKTKLQDENLKELIEKKDHLTkELEDIKMSLQRSMSTQKALEEDLQIATKTI 326
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 805 KHLEIEKNA--ESSKASSITRELQGRELKLT--NLQENLSEVSQVKETLEKELQILKEKFAEASEEAvsvqrsmqETVNK 880
Cdd:pfam05483 327 CQLTEEKEAqmEELNKAKAAHSFVVTEFEATtcSLEELLRTEQQRLEKNEDQLKIITMELQKKSSEL--------EEMTK 398
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 881 LHQKEEqfnmlsSDLEKLRENLADMEAKFREKdereEQLIKAKEKLENDIAEIMKMsgdnssqltkmndeLRLKERDVEE 960
Cdd:pfam05483 399 FKNNKE------VELEELKKILAEDEKLLDEK----KQFEKIAEELKGKEQELIFL--------------LQAREKEIHD 454
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 961 LQLKLTKANENASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKELERKlsdlEKKMETSHNQCQELKARYERATSETKTKH 1040
Cdd:pfam05483 455 LEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLEN----KELTQEASDMTLELKKHQEDIINCKKQEE 530
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1041 EEI--LQNLQKTLLDTEDKLKGAREEnsgLLQELEELRKQADKAKaaqtaEDAMQIMEQMTKEKTetlasledtkqtnak 1118
Cdd:pfam05483 531 RMLkqIENLEEKEMNLRDELESVREE---FIQKGDEVKCKLDKSE-----ENARSIEYEVLKKEK--------------- 587
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1119 lQNELDTLKENNLKNVEElNKSKELltvenqkmEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRdevtshQK 1198
Cdd:pfam05483 588 -QMKILENKCNNLKKQIE-NKNKNI--------EELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAK------QK 651
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1199 LEEERSVLNNQLLEMKKRESKFIKDADEEKASLQKSISITSAL-------LTEKDAELEKLRNEVTVLRGENASAKSLH- 1270
Cdd:pfam05483 652 FEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIdkrcqhkIAEMVALMEKHKHQYDKIIEERDSELGLYk 731
|
730 740 750
....*....|....*....|....*....|.
gi 530401713 1271 SVVQTLESDKVKLELKVKNLELQLKENKRQL 1301
Cdd:pfam05483 732 NKEQEQSSAKAALEIELSNIKAELLSLKKQL 762
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
351-862 |
8.34e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 67.01 E-value: 8.34e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 351 TALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEqELALARDGHDQHVLELEAKMDQLRTMVEaadrEKVELLNQ 430
Cdd:PRK03918 203 EEVLREINEISSELPELREELEKLEKEVKELEELKEEIE-ELEKELESLEGSKRKLEEKIRELEERIE----ELKKEIEE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 431 LEEEKRKVEDLQFRVEEESITKGDLEQKSQISEDPENTQTKLEhARIKELEQSLlfekTKADKLQRELEDTRVATVSEKS 510
Cdd:PRK03918 278 LEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLE-EEINGIEERI----KELEEKEERLEELKKKLKELEK 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 511 RIMELEKDLAL--RVQEVAELRRRLESNKPAGDVDMSLSLLQEISSLQEKLEVTRTDHQREITSLKEHFGARE------- 581
Cdd:PRK03918 353 RLEELEERHELyeEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKkaieelk 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 582 --------------ETHQKEIKALYTAT-EKLSKENESLKSKLEHANKENSDVIALWK-----SKLETAIASHQQAMEEL 641
Cdd:PRK03918 433 kakgkcpvcgreltEEHRKELLEEYTAElKRIEKELKEIEEKERKLRKELRELEKVLKkeselIKLKELAEQLKELEEKL 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 642 KVSFSKGLGTETAEFAELKTQIEKMRldyqHEIENLQnqqdsERAAHAKEMEALRAKLMKVIKEKENSLEAIRSKLDKAE 721
Cdd:PRK03918 513 KKYNLEELEKKAEEYEKLKEKLIKLK----GEIKSLK-----KELEKLEELKKKLAELEKKLDELEEELAELLKELEELG 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 722 DQHLVEMEDTLNKLQEAEIKVKELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAE 801
Cdd:PRK03918 584 FESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEE 663
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 530401713 802 KQIKHLEIEKNAESSKASSITRELQGRELK--LTNLQENLSEVSQVKETLEK------ELQILKEKFAE 862
Cdd:PRK03918 664 LREEYLELSRELAGLRAELEELEKRREEIKktLEKLKEELEEREKAKKELEKlekaleRVEELREKVKK 732
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
376-1353 |
1.21e-10 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 66.35 E-value: 1.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 376 AEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDQLRTMVE---AADREKVELLNQLEEEKRKVEDLQFRVEEEsitk 452
Cdd:pfam01576 12 EELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETElcaEAEEMRARLAARKQELEEILHELESRLEEE---- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 453 gdlEQKSQISEdpenTQTKLEHARIKELEQSLLFEKTKADKLQREledtrvaTVSEKSRIMELEKD-LALRVQEVAELRR 531
Cdd:pfam01576 88 ---EERSQQLQ----NEKKKMQQHIQDLEEQLDEEEAARQKLQLE-------KVTTEAKIKKLEEDiLLLEDQNSKLSKE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 532 RLESNKPAGDVDMSLSLLQEISSLQEKLevtRTDHQREITSLkehfgarEETHQKEikalytatEKLSKENESLKSKLEH 611
Cdd:pfam01576 154 RKLLEERISEFTSNLAEEEEKAKSLSKL---KNKHEAMISDL-------EERLKKE--------EKGRQELEKAKRKLEG 215
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 612 ANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKgLGTETAEfaelKTQIEKMRLDYQHEIENLQNQQDSERAAhake 691
Cdd:pfam01576 216 ESTDLQEQIAELQAQIAELRAQLAKKEEELQAALAR-LEEETAQ----KNNALKKIRELEAQISELQEDLESERAA---- 286
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 692 mealRAKLMKVIKEKENSLEAIRSKLDKAEDQHLVEME---------DTLNKLQEAEIKVKELEVLQAKcNEQTKVIDNF 762
Cdd:pfam01576 287 ----RNKAEKQRRDLGEELEALKTELEDTLDTTAAQQElrskreqevTELKKALEEETRSHEAQLQEMR-QKHTQALEEL 361
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 763 TSQLKATEEKLLDLD----ALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQEN 838
Cdd:pfam01576 362 TEQLEQAKRNKANLEkakqALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSE 441
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 839 LSEVSQVKETLEKelqilkeKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQ 918
Cdd:pfam01576 442 LESVSSLLNEAEG-------KNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRN 514
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 919 LIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLT-------KANENASFLQKSIEDMTVKAEQSQQ 991
Cdd:pfam01576 515 VERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEekaaaydKLEKTKNRLQQELDDLLVDLDHQRQ 594
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 992 eaakkheeekkelerKLSDLEKKMETSHNQCQELK---ARY----ERATSETKTKHEEILqNLQKTLLDTEDKLKGAREE 1064
Cdd:pfam01576 595 ---------------LVSNLEKKQKKFDQMLAEEKaisARYaeerDRAEAEAREKETRAL-SLARALEEALEAKEELERT 658
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1065 NSGLLQELEEL-RKQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQT--NAKLQNE-----LDTLKENNLKNVEE 1136
Cdd:pfam01576 659 NKQLRAEMEDLvSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQAteDAKLRLEvnmqaLKAQFERDLQARDE 738
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1137 LNKSKELLTVenQKMEEFRKEIETLKQaaaQKSQQLSALQeenvKLAEELGRSRDEVTSHQKLEEERSvlnNQLLEMKKR 1216
Cdd:pfam01576 739 QGEEKRRQLV--KQVRELEAELEDERK---QRAQAVAAKK----KLELDLKELEAQIDAANKGREEAV---KQLKKLQAQ 806
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1217 ESKFIKDADEEKASlQKSISITSallTEKDAELEKLRNEVTVLRGENASAKSLHSVVQTlESDKVKLELKVKNL-ELQLK 1295
Cdd:pfam01576 807 MKDLQRELEEARAS-RDEILAQS---KESEKKLKNLEAELLQLQEDLAASERARRQAQQ-ERDELADEIASGASgKSALQ 881
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1296 ENKRQLSSSSGNTDTQADE--------DERAQESQQMIDFLNSVIV--------------DLQRKNQDLKMKVEMMSEAA 1353
Cdd:pfam01576 882 DEKRRLEARIAQLEEELEEeqsntellNDRLRKSTLQVEQLTTELAaerstsqksesarqQLERQNKELKAKLQEMEGTV 961
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
352-991 |
1.36e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 66.22 E-value: 1.36e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 352 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELalardghdQHVLELEAKMDQLRTMVEAADREKVELLNQL 431
Cdd:PRK02224 210 GLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERR--------EELETLEAEIEDLRETIAETEREREELAEEV 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 432 EEEKRKVEDLQfrvEEESITKGDLEQKSQISEDPEntqtklehARIKELEqsllfekTKADKLQRELEDTRV---ATVSE 508
Cdd:PRK02224 282 RDLRERLEELE---EERDDLLAEAGLDDADAEAVE--------ARREELE-------DRDEELRDRLEECRVaaqAHNEE 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 509 KSRIMELEKDLALRVQEVAELRRRLESNkpagdvdmslslLQEISSLQEKLEVTRTDHQREITSLKEHFGAREEthqkei 588
Cdd:PRK02224 344 AESLREDADDLEERAEELREEAAELESE------------LEEAREAVEDRREEIEELEEEIEELRERFGDAPV------ 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 589 kalytATEKLSKENESLKSKLEHANKENSDVIALWKSkLETAIASHQQAMEELKVSfskglgtetaefaelktqiekmrl 668
Cdd:PRK02224 406 -----DLGNAEDFLEELREERDELREREAELEATLRT-ARERVEEAEALLEAGKCP------------------------ 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 669 dyqheiENLQNQQDSERAAHAKEMEALRAKLMKVIKEKENSLEAIRSKLDKAEDqhLVEMEDTLNKLQEAEIKVKELevl 748
Cdd:PRK02224 456 ------ECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAED--LVEAEDRIERLEERREDLEEL--- 524
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 749 qakcneqtkvidnFTSQLKATEEKLLDLDALRKASSEGKSEMkklRQQLEAAEKQikHLEIEKNAESSKASSITR-ELQG 827
Cdd:PRK02224 525 -------------IAERRETIEEKRERAEELRERAAELEAEA---EEKREAAAEA--EEEAEEAREEVAELNSKLaELKE 586
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 828 RELKLTNLQENLSEVSQVKETLEkELQILKEKFAEASEEAVSVQRSMQETVNKLHQK--EEQFNMLSSDLEKLRENLADM 905
Cdd:PRK02224 587 RIESLERIRTLLAAIADAEDEIE-RLREKREALAELNDERRERLAEKRERKRELEAEfdEARIEEAREDKERAEEYLEQV 665
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 906 EAKFREKDEREEQLIKAKEKLENDIAEImkmsgdnssqltkmnDELRLKERDVEELQLKLTKANENASFLQKSIedMTVK 985
Cdd:PRK02224 666 EEKLDELREERDDLQAEIGAVENELEEL---------------EELRERREALENRVEALEALYDEAEELESMY--GDLR 728
|
....*.
gi 530401713 986 AEQSQQ 991
Cdd:PRK02224 729 AELRQR 734
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
682-1351 |
6.59e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.93 E-value: 6.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 682 DSERAAHAKEMEALRAKLMK---VIKEKENSLEAIRSKLDKAEdqhlvEMEDTLNKLQEAEIKVKELEVLQAKcneqtKV 758
Cdd:TIGR02169 169 DRKKEKALEELEEVEENIERldlIIDEKRQQLERLRREREKAE-----RYQALLKEKREYEGYELLKEKEALE-----RQ 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 759 IDNFTSQLKATEEKLLDLDALRkasSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAEsskassITRELQGRELKLTNLQEN 838
Cdd:TIGR02169 239 KEAIERQLASLEEELEKLTEEI---SELEKRLEEIEQLLEELNKKIKDLGEEEQLR------VKEKIGELEAEIASLERS 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 839 LSEVSQVKETLEKELQILKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQ 918
Cdd:TIGR02169 310 IAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKD 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 919 LIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQeAAKKHE 998
Cdd:TIGR02169 390 YREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAA-DLSKYE 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 999 EEKKELERKLSDLEKKMETSHNQCQELKARYE--RATSETKTKHEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELR 1076
Cdd:TIGR02169 469 QELYDLKEEYDRVEKELSKLQRELAEAEAQARasEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEVAAGNR 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1077 KQADKAKAAQTAEDAMQIMEQM--------------TKEKTETLASLE------------DTKQTNAKLQNELDTLKENN 1130
Cdd:TIGR02169 549 LNNVVVEDDAVAKEAIELLKRRkagratflplnkmrDERRDLSILSEDgvigfavdlvefDPKYEPAFKYVFGDTLVVED 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1131 LKNVEELNKSKELLTVENQ---------------------------KMEEFRKEIETLKqaaaqksQQLSALQEENVKLA 1183
Cdd:TIGR02169 629 IEAARRLMGKYRMVTLEGElfeksgamtggsraprggilfsrsepaELQRLRERLEGLK-------RELSSLQSELRRIE 701
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1184 EELGRSRDEVTSHQKLEEERSVLNNQLLEMKKRESKFIKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGEN 1263
Cdd:TIGR02169 702 NRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEAL 781
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1264 AS--AKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSgnTDTQADEDERAQESQQMIDfLNSVIVDLQRKNQD 1341
Cdd:TIGR02169 782 NDleARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLT--LEKEYLEKEIQELQEQRID-LKEQIKSIEKEIEN 858
|
730
....*....|
gi 530401713 1342 LKMKVEMMSE 1351
Cdd:TIGR02169 859 LNGKKEELEE 868
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
789-1304 |
8.62e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 63.50 E-value: 8.62e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 789 EMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAV 868
Cdd:TIGR04523 41 KLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKN 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 869 SVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMN 948
Cdd:TIGR04523 121 KLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 949 ---DELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQEAakkheeekkelerklSDLEKKMETSHNQCQEL 1025
Cdd:TIGR04523 201 lllSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEI---------------SNTQTQLNQLKDEQNKI 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1026 KARYERATSETKTKHEEI------LQNLQKTLLD-----TEDKLKGAREENSGLLQELEELRKQADKAKaaQTAEDAMQI 1094
Cdd:TIGR04523 266 KKQLSEKQKELEQNNKKIkelekqLNQLKSEISDlnnqkEQDWNKELKSELKNQEKKLEEIQNQISQNN--KIISQLNEQ 343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1095 MEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKelltvenQKMEEFRKEIETLKQAAAQKSQQLSA 1174
Cdd:TIGR04523 344 ISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLE-------SQINDLESKIQNQEKLNQQKDEQIKK 416
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1175 LQEENVKLAEELGRSRDEVTSHQK----LEEERSVLNNQLLEMKKRESKF---IKDADEEKASLQKSISITSALLTEKDA 1247
Cdd:TIGR04523 417 LQQEKELLEKEIERLKETIIKNNSeikdLTNQDSVKELIIKNLDNTRESLetqLKVLSRSINKIKQNLEQKQKELKSKEK 496
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 530401713 1248 ELEKLRNEVTVLRGENASAK----SLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSS 1304
Cdd:TIGR04523 497 ELKKLNEEKKELEEKVKDLTkkisSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKE 557
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
585-1383 |
1.34e-09 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 63.15 E-value: 1.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 585 QKEIKALYTATEKLSKEN---ESLKSKLEHANKENSDVIALWKS--KLETAIASHQQAMEEL-KVS---FSKGLGTETAE 655
Cdd:TIGR01612 578 EKEIKDLFDKYLEIDDEIiyiNKLKLELKEKIKNISDKNEYIKKaiDLKKIIENNNAYIDELaKISpyqVPEHLKNKDKI 657
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 656 FAELKTQIEKMrldYQHEIENLQNQQDSERAAHAKEMEALRAKLMKVIKEKENSLEAIRSKLDKAEDQHLVEMEDTLNKL 735
Cdd:TIGR01612 658 YSTIKSELSKI---YEDDIDALYNELSSIVKENAIDNTEDKAKLDDLKSKIDKEYDKIQNMETATVELHLSNIENKKNEL 734
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 736 QEAEIKVKElEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQL--EAAEKQIKHLEIEKNA 813
Cdd:TIGR01612 735 LDIIVEIKK-HIHGEINKDLNKILEDFKNKEKELSNKINDYAKEKDELNKYKSKISEIKNHYndQINIDNIKDEDAKQNY 813
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 814 ESSKASSITRELQGREL-KLTNlqenlsevsqvketlekELQILKEKFAEASEEAVSVQRSMQETVNKLHqkeEQFNMLS 892
Cdd:TIGR01612 814 DKSKEYIKTISIKEDEIfKIIN-----------------EMKFMKDDFLNKVDKFINFENNCKEKIDSEH---EQFAELT 873
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 893 SDL--EKLRENLADMEAKFREKdereeqlikakEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANE 970
Cdd:TIGR01612 874 NKIkaEISDDKLNDYEKKFNDS-----------KSLINEINKSIEEEYQNINTLKKVDEYIKICENTKESIEKFHNKQNI 942
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 971 NASFLQKSIEdmTVKAEQSQQEaakkheeekkelerklSDLEKKMETSHNQCQEL-KARYERATSETKTKHEEILQ---N 1046
Cdd:TIGR01612 943 LKEILNKNID--TIKESNLIEK----------------SYKDKFDNTLIDKINELdKAFKDASLNDYEAKNNELIKyfnD 1004
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1047 LQKTL-LDTEDKLKGAREENSGLLQELEElrKQADKAKAAQTAEDAM-----QIMEQMTKEKTETLASLE-------DTK 1113
Cdd:TIGR01612 1005 LKANLgKNKENMLYHQFDEKEKATNDIEQ--KIEDANKNIPNIEIAIhtsiyNIIDEIEKEIGKNIELLNkeileeaEIN 1082
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1114 QTN-------AKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAeel 1186
Cdd:TIGR01612 1083 ITNfneikekLKHYNFDDFGKEENIKYADEINKIKDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKAQINDLEDVA--- 1159
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1187 grsrdevtshqkleeERSVLNNQLLEMKKRESKFIKDADEEKASLQksisitsalltekdaELEKLRNEVTvlrgenasa 1266
Cdd:TIGR01612 1160 ---------------DKAISNDDPEEIEKKIENIVTKIDKKKNIYD---------------EIKKLLNEIA--------- 1200
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1267 kslhsvvqTLESDKVKLElKVKNLELQLKENKrqlssssgNTDTQADEDERAQESQQMIDFLNSVIVDLQR-KNQDLKMK 1345
Cdd:TIGR01612 1201 --------EIEKDKTSLE-EVKGINLSYGKNL--------GKLFLEKIDEEKKKSEHMIKAMEAYIEDLDEiKEKSPEIE 1263
|
810 820 830 840
....*....|....*....|....*....|....*....|
gi 530401713 1346 VEMMSEAALNGNGDDLNNYDSDDQEKQ--SKKKPRLFCDI 1383
Cdd:TIGR01612 1264 NEMGIEMDIKAEMETFNISHDDDKDHHiiSKKHDENISDI 1303
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
426-1298 |
3.37e-09 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 61.99 E-value: 3.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 426 ELLNQLEEEKRKVED-LQFRVEEESITKGDLEQKSQISEDPENTQTKLEHARIKELEQSLLFEKTKADKLQRELEDTRVA 504
Cdd:TIGR00606 210 KYLKQYKEKACEIRDqITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 505 TVSEK------SRIMELEKDLALRVQEVAELRRRLES-----NKPAGDVDMSLS-LLQEISSLQEKLEVTRtDHQREITS 572
Cdd:TIGR00606 290 LKMEKvfqgtdEQLNDLYHNHQRTVREKERELVDCQReleklNKERRLLNQEKTeLLVEQGRLQLQADRHQ-EHIRARDS 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 573 LKEHFGAREETHQKEIKALytATEKLSKENESLKSKLEHANKENSDVIALWKSKLETAiashQQAMEELKVSFSKGLGTE 652
Cdd:TIGR00606 369 LIQSLATRLELDGFERGPF--SERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLK----QEQADEIRDEKKGLGRTI 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 653 TAEFAELKTQIEKMRldyqHEIENLQNQQDSeraahakemealraklMKVIKEKENSLEAIRSKLDKAEDQHLVEMEdtl 732
Cdd:TIGR00606 443 ELKKEILEKKQEELK----FVIKELQQLEGS----------------SDRILELDQELRKAERELSKAEKNSLTETL--- 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 733 nKLQEAEIKVKELEVLQAKCNEQTKV--IDNFTSQLKATE----EKLLDLDALRKASSEGKSEM---------------- 790
Cdd:TIGR00606 500 -KKEVKSLQNEKADLDRKLRKLDQEMeqLNHHTTTRTQMEmltkDKMDKDEQIRKIKSRHSDELtsllgyfpnkkqledw 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 791 -KKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQvKETLEKELQILKEKFAEAS----- 864
Cdd:TIGR00606 579 lHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCG-SQDEESDLERLKEEIEKSSkqram 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 865 ------------EEAVSVQRSMQETVNKLHQKEEQFNMLSSDLE-KLR---ENLADMEAKFREKDEREEQLIKAKEKLEN 928
Cdd:TIGR00606 658 lagatavysqfiTQLTDENQSCCPVCQRVFQTEAELQEFISDLQsKLRlapDKLKSTESELKKKEKRRDEMLGLAPGRQS 737
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 929 DIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKELERKL 1008
Cdd:TIGR00606 738 IIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQG 817
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1009 SDLEKKMETSHNQCQELKARYERATSETKtKHEEILQNLQKTLLDTEDKLKgarEENSGLLQELEELRKQADKAKAAQTA 1088
Cdd:TIGR00606 818 SDLDRTVQQVNQEKQEKQHELDTVVSKIE-LNRKLIQDQQEQIQHLKSKTN---ELKSEKLQIGTNLQRRQQFEEQLVEL 893
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1089 EDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVE-ELNKSKELLTVENQKMEEFRKEIETLKQAAAQ 1167
Cdd:TIGR00606 894 STEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQdKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLK 973
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1168 KSQ--------QLSALQEENVKLAEELGRSRDEVTSHQKLEeerSVLNNQLLEMKKRESkfIKDADEEKASLQKSISitS 1239
Cdd:TIGR00606 974 QKEtelntvnaQLEECEKHQEKINEDMRLMRQDIDTQKIQE---RWLQDNLTLRKRENE--LKEVEEELKQHLKEMG--Q 1046
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|....*....
gi 530401713 1240 ALLTEKDAELEKLRNEVTVLRGENASAkslHSVVQTLESDKVKLELKVKNLELQLKENK 1298
Cdd:TIGR00606 1047 MQVLQMKQEHQKLEENIDLIKRNHVLA---LGRQKGYEKEIKHFKKELREPQFRDAEEK 1102
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1057-1353 |
4.79e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.11 E-value: 4.79e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1057 KLKGAREENSGLLQELEELRKQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEE 1136
Cdd:COG1196 217 ELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1137 LNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVtshQKLEEERSVLNNQLLEMKKR 1216
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEEL---EEAEAELAEAEEALLEAEAE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1217 ESKFIKDADE---EKASLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKSlhsvvQTLESDKVKLELKVKNLELQ 1293
Cdd:COG1196 374 LAEAEEELEElaeELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEE-----ALAELEEEEEEEEEALEEAA 448
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1294 LKENKRQLSSSSGNTDTQADEDERAQESQQMIDFLNSVIVDLQRKNQDLKMKVEMMSEAA 1353
Cdd:COG1196 449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLE 508
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
474-1085 |
7.14e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.72 E-value: 7.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 474 HARIKELEQSLLFEKTKADKLQRELEDTRVATVSEKSRIMELEKDLALRVQEVAELRRRLESnkpagdvdmslsLLQEIS 553
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR------------LEQDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 554 SLQEKLEVTRTDHQREITSLKEHfGAREETHQKEIKALYTATEKLSKENESLKSKLEHANKENSDVIALWKSKLETAIAS 633
Cdd:COG1196 306 RLEERRRELEERLEELEEELAEL-EEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEEL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 634 HQQAMEELKvsfskglgtETAEFAELKTQIEKMRLDYQHEIENLQNQQDSERAAHAKEMEALRAKLMKVIKEKENSLEai 713
Cdd:COG1196 385 AEELLEALR---------AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE-- 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 714 rskLDKAEDQHLVEMEDTLNKLQEAEIKVKELEvlqakcneqtkvidnftsQLKATEEKLLDLDALRKASSEGKSEMKKL 793
Cdd:COG1196 454 ---LEEEEEALLELLAELLEEAALLEAALAELL------------------EELAEAAARLLLLLEAEADYEGFLEGVKA 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 794 RQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRelkltnLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQRS 873
Cdd:COG1196 513 ALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAA------LQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARA 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 874 MQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLEndiaeimkmsgdnssqltkmndELRL 953
Cdd:COG1196 587 ALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAV----------------------TLAG 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 954 KERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYERAT 1033
Cdd:COG1196 645 RLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEE 724
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 530401713 1034 SETKTKHEEILQNLQKTLLDTEDKLKgAREENSGLLQELEELRKQADKAKAA 1085
Cdd:COG1196 725 ALEEQLEAEREELLEELLEEEELLEE-EALEELPEPPDLEELERELERLERE 775
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
747-973 |
1.31e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 58.62 E-value: 1.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 747 VLQAKCNEQTKVIDNFTSQLKATEEKlldLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEieknaesskassitRELQ 826
Cdd:COG4942 10 LLALAAAAQADAAAEAEAELEQLQQE---IAELEKELAALKKEEKALLKQLAALERRIAALA--------------RRIR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 827 GRELKLTNLQENLSEVSQVKETLEKELQILKEKFAE------------------ASEEAVSVQRSMQETVNKLHQKEEQF 888
Cdd:COG4942 73 ALEQELAALEAELAELEKEIAELRAELEAQKEELAEllralyrlgrqpplalllSPEDFLDAVRRLQYLKYLAPARREQA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 889 NMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKA 968
Cdd:COG4942 153 EELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
....*
gi 530401713 969 NENAS 973
Cdd:COG4942 233 EAEAA 237
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
710-1255 |
1.92e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 59.16 E-value: 1.92e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 710 LEAIRSKLDKAEDQ--HLVEMEDTLNKLQEAEIKVKELEVLQAKcneqtkvIDNFTSQLKateeklldLDALRKASSEGK 787
Cdd:COG4913 237 LERAHEALEDAREQieLLEPIRELAERYAAARERLAELEYLRAA-------LRLWFAQRR--------LELLEAELEELR 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 788 SEMKKLRQQLEAAEKQIKHLEIEK-NAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEE 866
Cdd:COG4913 302 AELARLEAELERLEARLDALREELdELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEE 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 867 AVSVQRSMQETVNKLHQKEEQfnmlssdlekLRENLADMEAKFREKDEREEQLikakeklENDIAEIMKMSGDNSSQLTK 946
Cdd:COG4913 382 FAALRAEAAALLEALEEELEA----------LEEALAEAEAALRDLRRELREL-------EAEIASLERRKSNIPARLLA 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 947 M----NDELRLKERDV----EELQLKltkaNENASFlQKSIE--------DMTVKAEQSQQ----------------EAA 994
Cdd:COG4913 445 LrdalAEALGLDEAELpfvgELIEVR----PEEERW-RGAIErvlggfalTLLVPPEHYAAalrwvnrlhlrgrlvyERV 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 995 KKHEEEKKELERKLSDLEKKMETSHNQCQE-LKARYERATSETKTKHEEILQNLQKTL---------------------- 1051
Cdd:COG4913 520 RTGLPDPERPRLDPDSLAGKLDFKPHPFRAwLEAELGRRFDYVCVDSPEELRRHPRAItragqvkgngtrhekddrrrir 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1052 ------LDTEDKLKGAREENSGLLQELEELRKQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDT 1125
Cdd:COG4913 600 sryvlgFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELER 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1126 LKENNLKnVEELnkskelltveNQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVtshQKLEEERSV 1205
Cdd:COG4913 680 LDASSDD-LAAL----------EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRL---EAAEDLARL 745
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 530401713 1206 LNNQLLEMKKRESKFIKDADEEKASLQKSISITSALLTEKDAELEKLRNE 1255
Cdd:COG4913 746 ELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
410-952 |
2.10e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 59.16 E-value: 2.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 410 MDQLRTMVEAAD--REKVELLNQLEEEKRKVEDLQFRVE--EESITKGDLEQKSQISEDPENTQTKLEhARIKELEQSLL 485
Cdd:COG4913 234 FDDLERAHEALEdaREQIELLEPIRELAERYAAARERLAelEYLRAALRLWFAQRRLELLEAELEELR-AELARLEAELE 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 486 FEKTKADKLQRELEDTRVATVSEK-SRIMELEKDLALRVQEVAELRRRLESnkpagdvdmslsLLQEISSLQEKLEVTR- 563
Cdd:COG4913 313 RLEARLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEERERRRAR------------LEALLAALGLPLPASAe 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 564 --TDHQREITSLKEHFGAREETHQKEIKALYTATEKLSKENESLKSKLEH--ANKEN--SDVIALwKSKLETAIASHQQA 637
Cdd:COG4913 381 efAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASleRRKSNipARLLAL-RDALAEALGLDEAE 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 638 M----EELKV---------SFSKGLGT-------ETAEFAELKTQIE----KMRLDYQHEIENLQNQQDSERAAH--AKE 691
Cdd:COG4913 460 LpfvgELIEVrpeeerwrgAIERVLGGfaltllvPPEHYAAALRWVNrlhlRGRLVYERVRTGLPDPERPRLDPDslAGK 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 692 ME--------------ALRAKLMKV------------------IKEKENSLE-----AIRS----------KLDKAEDQh 724
Cdd:COG4913 540 LDfkphpfrawleaelGRRFDYVCVdspeelrrhpraitragqVKGNGTRHEkddrrRIRSryvlgfdnraKLAALEAE- 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 725 LVEMEDTLNKLQEAEIKVK-ELEVLQAKCNEQTKVIDNFTSQL--KATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAE 801
Cdd:COG4913 619 LAELEEELAEAEERLEALEaELDALQERREALQRLAEYSWDEIdvASAEREIAELEAELERLDASSDDLAALEEQLEELE 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 802 KQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELqiLKEKFAEASEEAV------SVQRSMQ 875
Cdd:COG4913 699 AELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAL--LEERFAAALGDAVerelreNLEERID 776
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 876 ETVNKLHQKEEQ-----------FNMLSSD--------------LEKLREN-LADMEAKFRE-KDEREEQLIKA-KEKLE 927
Cdd:COG4913 777 ALRARLNRAEEEleramrafnreWPAETADldadleslpeylalLDRLEEDgLPEYEERFKElLNENSIEFVADlLSKLR 856
|
650 660
....*....|....*....|....*
gi 530401713 928 NDIAEImkmsgdnSSQLTKMNDELR 952
Cdd:COG4913 857 RAIREI-------KERIDPLNDSLK 874
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
409-1159 |
2.46e-08 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 58.58 E-value: 2.46e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 409 KMDQLRTMVEAADREKVELLNQ----LEEEKRKVEDLQFRVEEESITkgdLEQKSQISEDPENTQTKLEHArIKELEQSL 484
Cdd:pfam05483 89 KIKKWKVSIEAELKQKENKLQEnrkiIEAQRKAIQELQFENEKVSLK---LEEEIQENKDLIKENNATRHL-CNLLKETC 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 485 LFEKTKADKLQRELEDTRVAtvseksrIMELEKDLALRVQEVAELRRRLESNKpagdVDMSLSLLQE---ISSLQEKLEV 561
Cdd:pfam05483 165 ARSAEKTKKYEYEREETRQV-------YMDLNNNIEKMILAFEELRVQAENAR----LEMHFKLKEDhekIQHLEEEYKK 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 562 TRTDHQREITSLKEHFGAREETHQKEIKALYTATEKLSKENESLKSKLEHANKENSDVIALWKSkletaiashqqaMEEL 641
Cdd:pfam05483 234 EINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKE------------LEDI 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 642 KVSFSKGLGTETAEFAELKTQIEKMrldyqheienlqNQQDSERAAHAKEMEALRAKLMKVIKEKENSLEAIRSKLdKAE 721
Cdd:pfam05483 302 KMSLQRSMSTQKALEEDLQIATKTI------------CQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELL-RTE 368
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 722 DQHLVEMEDTLNKL-QEAEIKVKELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEAA 800
Cdd:pfam05483 369 QQRLEKNEDQLKIItMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAR 448
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 801 EKQIKHLEIEKNAE-------SSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQRS 873
Cdd:pfam05483 449 EKEIHDLEIQLTAIktseehyLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQ 528
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 874 MQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKmndELRL 953
Cdd:pfam05483 529 EERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKK---QIEN 605
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 954 KERDVEELQLKLTKANENASFLQKSIEDMTVKAEQsqqeaakkheeekkelerklsdLEKKMETSHNQCQELKARYERAT 1033
Cdd:pfam05483 606 KNKNIEELHQENKALKKKGSAENKQLNAYEIKVNK----------------------LELELASAKQKFEEIIDNYQKEI 663
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1034 SETKTKHEEILQNLQKTLLDTEDKLKgareensglLQELEELRKQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTK 1113
Cdd:pfam05483 664 EDKKISEEKLLEEVEKAKAIADEAVK---------LQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKE 734
|
730 740 750 760
....*....|....*....|....*....|....*....|....*.
gi 530401713 1114 QTNAKLQNELDTlKENNLKNveELNKSKELLTVENQKMEEFRKEIE 1159
Cdd:pfam05483 735 QEQSSAKAALEI-ELSNIKA--ELLSLKKQLEIEKEEKEKLKMEAK 777
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
788-991 |
3.07e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.47 E-value: 3.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 788 SEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEA 867
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 868 VSVQRSMQETVNKLHQKEEQ----FNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQ 943
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQpplaLLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 530401713 944 LTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQ 991
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
673-1101 |
4.29e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 57.86 E-value: 4.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 673 EIENLQNQQDSERAAHAKEMEALRAKL------MKVIKEKENSLEAIRSKLDKAEDQ--HLVEMEDTLNKLQEAEIKVKE 744
Cdd:COG4717 54 EADELFKPQGRKPELNLKELKELEEELkeaeekEEEYAELQEELEELEEELEELEAEleELREELEKLEKLLQLLPLYQE 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 745 LEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQL-EAAEKQIKHLEIEKNAESSKASSITR 823
Cdd:COG4717 134 LEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLsLATEEELQDLAEELEELQQRLAELEE 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 824 ELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQRSMQETVNKLHQKEE------------QFNML 891
Cdd:COG4717 214 ELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAgvlflvlgllalLFLLL 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 892 SSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANEN 971
Cdd:COG4717 294 AREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIA 373
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 972 ASFLQ---KSIEDMTVKAEQSQQEAakkheeekkelerklsDLEKKMETSHNQCQEL-KARYERATSETKTKHEEILQNL 1047
Cdd:COG4717 374 ALLAEagvEDEEELRAALEQAEEYQ----------------ELKEELEELEEQLEELlGELEELLEALDEEELEEELEEL 437
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 530401713 1048 QKTLLDTEDKLKGAREENSGLLQELEELRKQADKAKAAQTAEDAMQIMEQMTKE 1101
Cdd:COG4717 438 EEELEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAELRELAEE 491
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
790-1216 |
4.88e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 57.47 E-value: 4.88e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 790 MKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFaeaseEAVS 869
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREEL-----EKLE 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 870 VQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLEndiAEIMKMSGDNSSQLTKMND 949
Cdd:COG4717 123 KLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELE---ELLEQLSLATEEELQDLAE 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 950 ELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLE----------------- 1012
Cdd:COG4717 200 ELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLglggsllsliltiagvl 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1013 --------------KKMETSHNQCQELKARYERATSETKTKHEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQ 1078
Cdd:COG4717 280 flvlgllallflllAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEEL 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1079 ADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKEnnlkNVEELNKSKELLTVENQKmEEFRKEI 1158
Cdd:COG4717 360 EEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEE----QLEELLGELEELLEALDE-EELEEEL 434
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 530401713 1159 ETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEvTSHQKLEEERSVLNNQLLEMKKR 1216
Cdd:COG4717 435 EELEEELEELEEELEELREELAELEAELEQLEED-GELAELLQELEELKAELRELAEE 491
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
404-982 |
8.97e-08 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 56.83 E-value: 8.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 404 LELEAKMDQLRTMVEAADREKVEL---LNQLEEEKRKVEDlqfrveEESITKGDLEQKSQISEDPENTQTKLEHAriKEL 480
Cdd:PRK01156 169 DKLKDVIDMLRAEISNIDYLEEKLkssNLELENIKKQIAD------DEKSHSITLKEIERLSIEYNNAMDDYNNL--KSA 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 481 EQSLLFEKTKADKLQRELEDtrvatvSEKSRIMELEKDLALRvqEVAELRRRLESNKPAGDVDMSLSLLQEISSLQEKLE 560
Cdd:PRK01156 241 LNELSSLEDMKNRYESEIKT------AESDLSMELEKNNYYK--ELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQ 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 561 VtrtdhqreITSLKEHFGAREETHQK--EIKALYTATEKLSKENESLKSKLEHANKENSDVIALWKS--KLETAIASHQQ 636
Cdd:PRK01156 313 I--------LSNIDAEINKYHAIIKKlsVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSieSLKKKIEEYSK 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 637 AMEELKVSFSKGLGTETAEFAELKTQIEKMRLDYQHEIENLQNQQDSERAAHAKEMEALRAKLMKvikEKENSLEAIRSK 716
Cdd:PRK01156 385 NIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEML---NGQSVCPVCGTT 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 717 LDKAEDQHLVEmeDTLNKLQEAEIKVKELEVLQAKCNEQTKVIDNFTSQLKATE--------EKLLDLDALRKASSEGKS 788
Cdd:PRK01156 462 LGEEKSNHIIN--HYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEinksineyNKIESARADLEDIKIKIN 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 789 EMKKLRQQLEAAEKQIKHLEIEkNAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAV 868
Cdd:PRK01156 540 ELKDKHDKYEEIKNRYKSLKLE-DLDSKRTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYID 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 869 SVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLeNDIAEIMKMSgdnSSQLTKMN 948
Cdd:PRK01156 619 KSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRI-NDIEDNLKKS---RKALDDAK 694
|
570 580 590
....*....|....*....|....*....|....
gi 530401713 949 DELRLKERDVEELQLKLTKANENASFLQKSIEDM 982
Cdd:PRK01156 695 ANRARLESTIEILRTRINELSDRINDINETLESM 728
|
|
| CLIP1_ZNF |
pfam16641 |
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of ... |
1418-1434 |
1.05e-07 |
|
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of the cytoplasmic linker protein CLIP1 (CLIP170). It forms a complex with the CAP-Gly domain of Dynactin.
Pssm-ID: 465212 Cd Length: 17 Bit Score: 49.00 E-value: 1.05e-07
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
335-1323 |
1.22e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 56.72 E-value: 1.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 335 LLTETSSRYARKISGTTALQEALKEKQQHIEQLlaERDLERAEVAKATSHVGEIEQELALARdgHDQHVLELEAKMDQLR 414
Cdd:pfam01576 76 ILHELESRLEEEEERSQQLQNEKKKMQQHIQDL--EEQLDEEEAARQKLQLEKVTTEAKIKK--LEEDILLLEDQNSKLS 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 415 TMVEAADREKVELLNQLEEEKRKVEDLqfrveeesiTKGDLEQKSQISEdpentqtkLEHARIKELEQSLLFEKTKAdKL 494
Cdd:pfam01576 152 KERKLLEERISEFTSNLAEEEEKAKSL---------SKLKNKHEAMISD--------LEERLKKEEKGRQELEKAKR-KL 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 495 QRELEDTRVATVSEKSRIMELEKDLALRVQEVAELRRRLEsnKPAGDVDMSLSLLQE----ISSLQEKLEVTRtdhqrei 570
Cdd:pfam01576 214 EGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLE--EETAQKNNALKKIREleaqISELQEDLESER------- 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 571 tslkehfGAREETHQKEikalytatEKLSKENESLKSKLEHANKENSDVIALwKSKLETAIASHQQAMEELKVSFSKGLG 650
Cdd:pfam01576 285 -------AARNKAEKQR--------RDLGEELEALKTELEDTLDTTAAQQEL-RSKREQEVTELKKALEEETRSHEAQLQ 348
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 651 ----TETAEFAELKTQIEKMRLDYQHeIENLQNQQDSERAAHAKEMEALRAKLMKV---IKEKENSLEAIRSKLDKAEDQ 723
Cdd:pfam01576 349 emrqKHTQALEELTEQLEQAKRNKAN-LEKAKQALESENAELQAELRTLQQAKQDSehkRKKLEGQLQELQARLSESERQ 427
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 724 HlVEMEDTLNKLQ-EAEIKVKELEVLQAKCNEQTKVIDNFTSQLKATEEKLldldalrkasSEGKSEMKKLRQQLEAAEK 802
Cdd:pfam01576 428 R-AELAEKLSKLQsELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELL----------QEETRQKLNLSTRLRQLED 496
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 803 QIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLE---KELQILKEKFAEASEEAVSVQRSMQETVN 879
Cdd:pfam01576 497 ERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEegkKRLQRELEALTQQLEEKAAAYDKLEKTKN 576
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 880 KLHQKEEQfnmLSSDLEKLRENLADMEAKFREKDE--REEQLIKAKEKLENDIAEIMKMSGDN-----SSQLTKMNDELR 952
Cdd:pfam01576 577 RLQQELDD---LLVDLDHQRQLVSNLEKKQKKFDQmlAEEKAISARYAEERDRAEAEAREKETralslARALEEALEAKE 653
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 953 LKERDVEELQLKLTKANENASFLQKSIEDM--TVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETShnqCQELKARYE 1030
Cdd:pfam01576 654 ELERTNKQLRAEMEDLVSSKDDVGKNVHELerSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVN---MQALKAQFE 730
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1031 RATSETKTKHEEILQNLQKTLLDTEdklkgareensgllQELEELRKQADKAKAAQTA-----EDAMQIMEQMTKEKTET 1105
Cdd:pfam01576 731 RDLQARDEQGEEKRRQLVKQVRELE--------------AELEDERKQRAQAVAAKKKleldlKELEAQIDAANKGREEA 796
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1106 LASLEDTKQTNAKLQNELDtlkENNLKNVEELNKSKElltvENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEE 1185
Cdd:pfam01576 797 VKQLKKLQAQMKDLQRELE---EARASRDEILAQSKE----SEKKLKNLEAELLQLQEDLAASERARRQAQQERDELADE 869
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1186 LGRSrdevtshqkleeerSVLNNQLLEMKKRESKFIKDADEEKASLQKSISITSALLTEKDAELEKLRNEvtvLRGENAS 1265
Cdd:pfam01576 870 IASG--------------ASGKSALQDEKRRLEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQLTTE---LAAERST 932
|
970 980 990 1000 1010
....*....|....*....|....*....|....*....|....*....|....*...
gi 530401713 1266 AKSLHSVVQTLESDKVKLELKVKNLELQLKeNKRQLSSSSGNTDTQADEDERAQESQQ 1323
Cdd:pfam01576 933 SQKSESARQQLERQNKELKAKLQEMEGTVK-SKFKSSIAALEAKIAQLEEQLEQESRE 989
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
467-1158 |
1.22e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 56.57 E-value: 1.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 467 NTQTKLEHARIKELEQSLLFEKTKADKLQRELEDTRVATVSEKSRIMELEkdlalrvQEVAELRRRLESNKPAGDVDmsl 546
Cdd:TIGR04523 74 NNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLE-------VELNKLEKQKKENKKNIDKF--- 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 547 slLQEISSLQEKLEVTRTDHQREItslkehfgarEETHQKEIKALYTATEKLSKENESLKSKLEHANKENSDVIALWKSK 626
Cdd:TIGR04523 144 --LTEIKKKEKELEKLNNKYNDLK----------KQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQ 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 627 LETAIASHQQAMEELKVSFSKGLGTETAEFAELKTQIEKMrldyQHEIENLQNQQDSE-RAAHAKEMEALRAKlmKVIKE 705
Cdd:TIGR04523 212 KNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNT----QTQLNQLKDEQNKIkKQLSEKQKELEQNN--KKIKE 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 706 KENSLEAIRSKLDKAEDQhlvEMEDTLNKLQ-EAEIKVKELEVLQAKCNEQTKVIDNFTSQLKAteeklldldaLRKASS 784
Cdd:TIGR04523 286 LEKQLNQLKSEISDLNNQ---KEQDWNKELKsELKNQEKKLEEIQNQISQNNKIISQLNEQISQ----------LKKELT 352
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 785 EGKSEMKKLRQQLEAAEKQIKHLEIEKNAES-------SKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILK 857
Cdd:TIGR04523 353 NSESENSEKQRELEEKQNEIEKLKKENQSYKqeiknleSQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLK 432
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 858 EKFAEASEEAVS----------------------------VQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKF 909
Cdd:TIGR04523 433 ETIIKNNSEIKDltnqdsvkeliiknldntresletqlkvLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKV 512
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 910 REKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELR--LKERDVEELQLKLTKANENASFLQKSIEDMTVKAE 987
Cdd:TIGR04523 513 KDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKkeNLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELID 592
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 988 QSQQeaakkheeEKKELERKLSDLEKKMETSHNQCQELKARYERATSEtKTKHEEILQNLQKTLLDTEDKLKGAREENSG 1067
Cdd:TIGR04523 593 QKEK--------EKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSI-IKNIKSKKNKLKQEVKQIKETIKEIRNKWPE 663
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1068 LLQELEELRKQADkakaaqtaeDAMQIMEQMTKEKTETlaslEDTKQTNAKLQNELDTLKENNLKNVEELNKSKELLTVE 1147
Cdd:TIGR04523 664 IIKKIKESKTKID---------DIIELMKDWLKELSLH----YKKYITRMIRIKDLPKLEEKYKEIEKELKKLDEFSKEL 730
|
730
....*....|.
gi 530401713 1148 NQKMEEFRKEI 1158
Cdd:TIGR04523 731 ENIIKNFNKKF 741
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1032-1236 |
1.54e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.16 E-value: 1.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1032 ATSETKTKHEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQ-ADKAKAAQTAEDAMQIMEQ----MTKEKTETL 1106
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRiAALARRIRALEQELAALEAelaeLEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1107 ASLEDTKQTNAKLQNELDTLKENN----LKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKL 1182
Cdd:COG4942 97 AELEAQKEELAELLRALYRLGRQPplalLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 530401713 1183 AEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKRESKFIKDADEEKASLQKSIS 1236
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIA 230
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
543-1301 |
2.65e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 55.36 E-value: 2.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 543 DMSLSLLQEISSLQEKLEVTRTDHQREITSLKEhfgaREETHQKEIKALYTATEKLSKENESLKSKLEHANKENSdvial 622
Cdd:TIGR00618 187 AKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHE----RKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLK----- 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 623 WKSKLETAIASHQQAMEELKVSfskglgTETAEFAELKTQIEKMRLDYQHEIEnlQNQQDSERAAHAKEMEALRAKLM-- 700
Cdd:TIGR00618 258 KQQLLKQLRARIEELRAQEAVL------EETQERINRARKAAPLAAHIKAVTQ--IEQQAQRIHTELQSKMRSRAKLLmk 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 701 -KVIKEKENSLEAIRSKLDKAEDQHLVEMEDTLNKLQEAEIKVKELEVLQaKCNEQTKVIDNFTSQLKATEEKLLDLDAL 779
Cdd:TIGR00618 330 rAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQ-HIHTLQQQKTTLTQKLQSLCKELDILQRE 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 780 RKASSEGKSEMKKLRQQLEAAEKQIkhlEIEKNAESSKASSITRELQGRELKLTNLQEnLSEVSQVKETLEKELQILKEK 859
Cdd:TIGR00618 409 QATIDTRTSAFRDLQGQLAHAKKQQ---ELQQRYAELCAAAITCTAQCEKLEKIHLQE-SAQSLKEREQQLQTKEQIHLQ 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 860 FAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKfrekDEREEQLIKAKEKLENDIAEIMKmsgd 939
Cdd:TIGR00618 485 ETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRG----EQTYAQLETSEEDVYHQLTSERK---- 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 940 nssQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEDMtvkaeqsQQEAAKKHEEEKKELERKLSDLEKKMETSH 1019
Cdd:TIGR00618 557 ---QRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRL-------QDLTEKLSEAEDMLACEQHALLRKLQPEQD 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1020 NQcqelkaryeratsETKTKHEEILQNLQKTLLdtedklkgareensGLLQELEELRKQADKAKAAQTAEDAMQIMEQmt 1099
Cdd:TIGR00618 627 LQ-------------DVRLHLQQCSQELALKLT--------------ALHALQLTLTQERVREHALSIRVLPKELLAS-- 677
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1100 kektetlasledtkqtNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEEN 1179
Cdd:TIGR00618 678 ----------------RQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDAL 741
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1180 VKLAEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKREskfIKDADEEKASLQKSISITSALLTEKDAELEKLRNEvtvl 1259
Cdd:TIGR00618 742 NQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAE---LSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPS---- 814
|
730 740 750 760
....*....|....*....|....*....|....*....|....*...
gi 530401713 1260 rGENASAKSLHSVVQTLESDKVKLELK------VKNLELQLKENKRQL 1301
Cdd:TIGR00618 815 -DEDILNLQCETLVQEEEQFLSRLEEKsatlgeITHQLLKYEECSKQL 861
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1014-1348 |
3.87e-07 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 55.08 E-value: 3.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1014 KMETSHNqCQELKARYERatSETKTKHEEILQNlQKTLLDTEDKLKGAREEnsglLQELEELRKQADKAKaaqtaedamQ 1093
Cdd:COG5022 837 EVEFSLK-AEVLIQKFGR--SLKAKKRFSLLKK-ETIYLQSAQRVELAERQ----LQELKIDVKSISSLK---------L 899
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1094 IMEQMTKEKTETLASLEDTKQTNAKLQNELDT-LKENNLKNVEELNKSKELltVENQKMEEFRKEIETLKQAaaqkSQQL 1172
Cdd:COG5022 900 VNLELESEIIELKKSLSSDLIENLEFKTELIArLKKLLNNIDLEEGPSIEY--VKLPELNKLHEVESKLKET----SEEY 973
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1173 SALQEENVKLAEELGRSRDEVTSHQK----LEEERSVLNNQLLEMKKRE---------SKFIKDADEEKASLQKSISITS 1239
Cdd:COG5022 974 EDLLKKSTILVREGNKANSELKNFKKelaeLSKQYGALQESTKQLKELPvevaelqsaSKIISSESTELSILKPLQKLKG 1053
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1240 ALLtekdAELEKLRNEVTVLRGENASAKSLHSVVQTLESDKVKL-ELKVKNLELqlkeNKRQLSSSSGNTDTQADEDERA 1318
Cdd:COG5022 1054 LLL----LENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLkTINVKDLEV----TNRNLVKPANVLQFIVAQMIKL 1125
|
330 340 350
....*....|....*....|....*....|
gi 530401713 1319 QESQQMIDFLNSVIVDLQRKNQDLKMKVEM 1348
Cdd:COG5022 1126 NLLQEISKFLSQLVNTLEPVFQKLSVLQLE 1155
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
405-1299 |
4.77e-07 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 55.06 E-value: 4.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 405 ELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQ----------FRVEEESITKGDLeqKSQISEDPENTQTKLEH 474
Cdd:TIGR01612 541 EIEAGLKESYELAKNWKKLIHEIKKELEEENEDSIHLEkeikdlfdkyLEIDDEIIYINKL--KLELKEKIKNISDKNEY 618
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 475 ARikeleqsllfektKADKLQRELEDTrvatvseKSRIMELEKDLALRVQEVAELRRRLESNKPA-------GDVDmslS 547
Cdd:TIGR01612 619 IK-------------KAIDLKKIIENN-------NAYIDELAKISPYQVPEHLKNKDKIYSTIKSelskiyeDDID---A 675
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 548 LLQEISSLQEKLEVTRTDHQREITSLKehfgAREETHQKEIKALYTATEKLSKENeslkskLEHANKENSDVIALWKSKL 627
Cdd:TIGR01612 676 LYNELSSIVKENAIDNTEDKAKLDDLK----SKIDKEYDKIQNMETATVELHLSN------IENKKNELLDIIVEIKKHI 745
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 628 ETAIASHQQAMEELKVSFSKGLGTETAEFAE-------LKTQIEKMRLDY--QHEIENLQNQQDSERAAHAKE----MEA 694
Cdd:TIGR01612 746 HGEINKDLNKILEDFKNKEKELSNKINDYAKekdelnkYKSKISEIKNHYndQINIDNIKDEDAKQNYDKSKEyiktISI 825
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 695 LRAKLMKVIKEKENSLEAIRSKLDK---AEDQHLVEME-------DTLNKLQeAEIKVKELEVLQAKCNEQTKVIDNFTs 764
Cdd:TIGR01612 826 KEDEIFKIINEMKFMKDDFLNKVDKfinFENNCKEKIDseheqfaELTNKIK-AEISDDKLNDYEKKFNDSKSLINEIN- 903
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 765 qlKATEEKLLDLDALrkassegksemKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELqgRELKLTNLQENlSEVSQ 844
Cdd:TIGR01612 904 --KSIEEEYQNINTL-----------KKVDEYIKICENTKESIEKFHNKQNILKEILNKNI--DTIKESNLIEK-SYKDK 967
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 845 VKETLEKELQILKEKFAEASeeavsvQRSMQETVNKLHQkeeQFNMLSSDLEKLRENLAdmeakFREKDEREEQLIKAKE 924
Cdd:TIGR01612 968 FDNTLIDKINELDKAFKDAS------LNDYEAKNNELIK---YFNDLKANLGKNKENML-----YHQFDEKEKATNDIEQ 1033
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 925 KLENDIAEIMKMSGDNSSQLTKMNDEL-RLKERDVEELQLK-LTKANENASFLQKSIEDMTV-KAEQSQQEAAKKHEEEK 1001
Cdd:TIGR01612 1034 KIEDANKNIPNIEIAIHTSIYNIIDEIeKEIGKNIELLNKEiLEEAEINITNFNEIKEKLKHyNFDDFGKEENIKYADEI 1113
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1002 KELERKLSDLEKKMETSHNQCQELKARYERATSETKTKHEEILQNLQKTLLDtedklkgarEENSGLLQELEELRKQADK 1081
Cdd:TIGR01612 1114 NKIKDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKAQINDLEDVADKAISN---------DDPEEIEKKIENIVTKIDK 1184
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1082 AKaaQTAEDAMQIMEQMTK-EKTETlaSLEDTKQTNAKLQNELDTLkenNLKNVEELNKSKELLTvenQKMEEFRKEIET 1160
Cdd:TIGR01612 1185 KK--NIYDEIKKLLNEIAEiEKDKT--SLEEVKGINLSYGKNLGKL---FLEKIDEEKKKSEHMI---KAMEAYIEDLDE 1254
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1161 LKQAAAQKSQQLSALQEENVKLaEELGRSRDEVTSHQKLEEERsvlNNQLLEMKKRESKFIKDADEE------KASLQKS 1234
Cdd:TIGR01612 1255 IKEKSPEIENEMGIEMDIKAEM-ETFNISHDDDKDHHIISKKH---DENISDIREKSLKIIEDFSEEsdindiKKELQKN 1330
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 530401713 1235 ISITSALLTEKDAELEKLRNEVTVLRGENasaksLHSVVQTLESDKVKLELKVKNLELQLKENKR 1299
Cdd:TIGR01612 1331 LLDAQKHNSDINLYLNEIANIYNILKLNK-----IKKIIDEVKEYTKEIEENNKNIKDELDKSEK 1390
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
661-1308 |
5.42e-07 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 54.70 E-value: 5.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 661 TQIEKMRLDYQHEIENLQNQQDSERAAHAKEMEALRAKLMKVIKEKENSLEAIR--SKLDKAE--DQHLVEMEDTLNKLQ 736
Cdd:COG5022 806 LGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKrfSLLKKETiyLQSAQRVELAERQLQ 885
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 737 EAEIKVKELEVLQAKCNEQTKVIDNFTSQLKATE--------EKLLDL-DALRKASSEGKSEMK----KLRQQLEAAEKQ 803
Cdd:COG5022 886 ELKIDVKSISSLKLVNLELESEIIELKKSLSSDLienlefktELIARLkKLLNNIDLEEGPSIEyvklPELNKLHEVESK 965
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 804 IKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQRSMQETVNKLHQ 883
Cdd:COG5022 966 LKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASKIISSESTELSIL 1045
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 884 KEEQfnmlssDLEKLrenladMEAKFREKDEREEQLIKAKEKLENDIAEImkmsgdnSSQLTKMNDELRLKERDVEELQL 963
Cdd:COG5022 1046 KPLQ------KLKGL------LLLENNQLQARYKALKLRRENSLLDDKQL-------YQLESTENLLKTINVKDLEVTNR 1106
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 964 KLTKAnenASFLQKSIedmtvkaeqSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYERATSETKTKHEEI 1043
Cdd:COG5022 1107 NLVKP---ANVLQFIV---------AQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPF 1174
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1044 LQNLQKTLLD---TEDKLKGAREENSGLLQELEELRKQ-------ADKAKAAQTAEDAMqimeqmtkekTETLASLEDTK 1113
Cdd:COG5022 1175 AALSEKRLYQsalYDEKSKLSSSEVNDLKNELIALFSKifsgwprGDKLKKLISEGWVP----------TEYSTSLKGFN 1244
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1114 QTNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKME-EFRKEIETLKQAAAQK-SQQLSALqeeNVKLAEELGRSRD 1191
Cdd:COG5022 1245 NLNKKFDTPASMSNEKLLSLLNSIDNLLSSYKLEEEVLPaTINSLLQYINVGLFNAlRTKASSL---RWKSATEVNYNSE 1321
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1192 EVtSHQKLEEERSVLNNQLLEMKKRESKFIKDadeeKASLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKslhS 1271
Cdd:COG5022 1322 EL-DDWCREFEISDVDEELEELIQAVKVLQLL----KDDLNKLDELLDACYSLNPAEIQNLKSRYDPADKENNLPK---E 1393
|
650 660 670
....*....|....*....|....*....|....*..
gi 530401713 1272 VVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNT 1308
Cdd:COG5022 1394 ILKKIEALLIKQELQLSLEGKDETEVHLSEIFSEEKS 1430
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
338-797 |
6.61e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 54.28 E-value: 6.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 338 ETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHD----------QHVLELE 407
Cdd:PRK02224 241 EVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGlddadaeaveARREELE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 408 AKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEQKSQIS----EDPENTQTKLEhARIKELEQS 483
Cdd:PRK02224 321 DRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAreavEDRREEIEELE-EEIEELRER 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 484 LLFEKTKADKLQRELEDTRVATVSEKSRIMELEKDLALRVQEVAELRRRLESNK---------PAGDVDMSLSLLQEISS 554
Cdd:PRK02224 400 FGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKcpecgqpveGSPHVETIEEDRERVEE 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 555 LQ---EKLEVTRTDHQREITSLKEHFGAREETHQKEIKAlYTATEKLSKENESLKSKLEHA---NKENSDVIALWKSKLE 628
Cdd:PRK02224 480 LEaelEDLEEEVEEVEERLERAEDLVEAEDRIERLEERR-EDLEELIAERRETIEEKRERAeelRERAAELEAEAEEKRE 558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 629 TAIASHQQAMEELKVsfskgLGTETAEFAELKTQIEKMR--LDYQHEIENLQNQQDS--ERAAHAKEMEALRAKLMKVIK 704
Cdd:PRK02224 559 AAAEAEEEAEEAREE-----VAELNSKLAELKERIESLEriRTLLAAIADAEDEIERlrEKREALAELNDERRERLAEKR 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 705 EK---------ENSLEAIRSKLDKAEdQHLVEMEDtlnKLQEAEIKVKELEVLQAKCNEQTKVIDNFTSQLKATEEKLLD 775
Cdd:PRK02224 634 ERkreleaefdEARIEEAREDKERAE-EYLEQVEE---KLDELREERDDLQAEIGAVENELEELEELRERREALENRVEA 709
|
490 500
....*....|....*....|..
gi 530401713 776 LDALRKASSEGKSEMKKLRQQL 797
Cdd:PRK02224 710 LEALYDEAEELESMYGDLRAEL 731
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
782-1120 |
9.75e-07 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 53.68 E-value: 9.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 782 ASSEGKsemkklrQQLEAAEKQIKHLEIEKNAESSKASSitrELQGRELKlTNLQENLSEVSQVKETLEKELQILKEKFA 861
Cdd:NF012221 1536 ATSESS-------QQADAVSKHAKQDDAAQNALADKERA---EADRQRLE-QEKQQQLAAISGSQSQLESTDQNALETNG 1604
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 862 EASEEAVSV-QRSMQETVNKLHQKEEQFNMLSSDLEKL----RENLADmeakfREKDEREEQLIKAKEKLENDIAEImkm 936
Cdd:NF012221 1605 QAQRDAILEeSRAVTKELTTLAQGLDALDSQATYAGESgdqwRNPFAG-----GLLDRVQEQLDDAKKISGKQLADA--- 1676
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 937 SGDNSSQLTKMNDELRLKERDVEelqlkltKANENASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKElerklsdlEKKME 1016
Cdd:NF012221 1677 KQRHVDNQQKVKDAVAKSEAGVA-------QGEQNQANAEQDIDDAKADAEKRKDDALAKQNEAQQA--------ESDAN 1741
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1017 TSHNQCQElkaRYERATSETKTKHEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELrKQADKAKAAQTAEDAMQIME 1096
Cdd:NF012221 1742 AAANDAQS---RGEQDASAAENKANQAQADAKGAKQDESDKPNRQGAAGSGLSGKAYSV-EGVAEPGSHINPDSPAAADG 1817
|
330 340
....*....|....*....|....*
gi 530401713 1097 QMTKEKTE-TLASLEDTKQTNAKLQ 1120
Cdd:NF012221 1818 RFSEGLTEqEQEALEGATNAVNRLQ 1842
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
647-1101 |
1.35e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.85 E-value: 1.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 647 KGLGTETAEFAELKTQIEKMRldyqHEIENLQNQQDSERAAHAKEMEALRA-KLMKVIKEKENSLEAIRSKLDKAEdQHL 725
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELE----EELEELEAELEELREELEKLEKLLQLlPLYQELEALEAELAELPERLEELE-ERL 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 726 VEMEDTLNKLQEAEikvKELEVLQAKCNEQTKVIDNftSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQIK 805
Cdd:COG4717 156 EELRELEEELEELE---AELAELQEELEELLEQLSL--ATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELE 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 806 HLEIEKNAEsskasSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQRSMQETVNKLHQKE 885
Cdd:COG4717 231 QLENELEAA-----ALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAE 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 886 EqfnmlssdleklrenladMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKL 965
Cdd:COG4717 306 E------------------LQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEE 367
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 966 TKANENASFLQ---KSIEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYERATSETKTKHEE 1042
Cdd:COG4717 368 LEQEIAALLAEagvEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEE 447
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 530401713 1043 iLQNLQKTLLDTEDKLKGAREEN--SGLLQELEELRKQ-ADKAKAAQTAEDAMQIMEQMTKE 1101
Cdd:COG4717 448 -LEELREELAELEAELEQLEEDGelAELLQELEELKAElRELAEEWAALKLALELLEEAREE 508
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
493-956 |
1.50e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 53.03 E-value: 1.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 493 KLQRELEDTRVATVSEKSRIMELEKDLAlrvqEVAELRRRLESnkpagDVDMS---LSLLQEISSLQEKLEVTRTDHQRE 569
Cdd:COG3096 289 ELRRELFGARRQLAEEQYRLVEMARELE----ELSARESDLEQ-----DYQAAsdhLNLVQTALRQQEKIERYQEDLEEL 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 570 ITSLKEHFGAREETH--QKEIKALYTATEKlskENESLKSKLehankensdviALWKSKLET----AIASHQ--QAMEEL 641
Cdd:COG3096 360 TERLEEQEEVVEEAAeqLAEAEARLEAAEE---EVDSLKSQL-----------ADYQQALDVqqtrAIQYQQavQALEKA 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 642 KVSFskGLGTETAEFAELKTQIEKMRLDYQHEiENLQNQQ-----DSERAAHAKEMEALRAKLMKVikEKENSLEAIRSK 716
Cdd:COG3096 426 RALC--GLPDLTPENAEDYLAAFRAKEQQATE-EVLELEQklsvaDAARRQFEKAYELVCKIAGEV--ERSQAWQTAREL 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 717 LDKAEDQ------------HLVEMEDTLNKLQEAEIKVKELEVLQAKCNEQTKVIDNFTSQLkatEEKLLDLDALRKASS 784
Cdd:COG3096 501 LRRYRSQqalaqrlqqlraQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAEL---EAQLEELEEQAAEAV 577
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 785 EGKSEMkklRQQLEAAEKQIKHLEieknaessKASSITRELQGRelkLTNLQEnlsevsQVKETLekelqilkekfaeas 864
Cdd:COG3096 578 EQRSEL---RQQLEQLRARIKELA--------ARAPAWLAAQDA---LERLRE------QSGEAL--------------- 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 865 EEAVSVQRSMQETVNKLHQKEeqfnmlssdleklrenladmeakfREKDereeQLIKAKEKLENDIAEIMKMSGDNSSQL 944
Cdd:COG3096 623 ADSQEVTAAMQQLLEREREAT------------------------VERD----ELAARKQALESQIERLSQPGGAEDPRL 674
|
490
....*....|..
gi 530401713 945 tkmndeLRLKER 956
Cdd:COG3096 675 ------LALAER 680
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
404-757 |
1.51e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 1.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 404 LELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLE-QKSQISEDPENTQTKLEH--ARIKEL 480
Cdd:TIGR02169 670 RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEkEIEQLEQEEEKLKERLEEleEDLSSL 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 481 EQSLLFEKTKADKLQRELEDTRVATVSEKSRIMELEKDLAL--------RVQEVAELRRRLESNkpAGDVDMSLSLLQEI 552
Cdd:TIGR02169 750 EQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHsripeiqaELSKLEEEVSRIEAR--LREIEQKLNRLTLE 827
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 553 SSLQEKLEVTRTDHQREITSLKEHFGAREETHQKEIKALYTATEKLSKENESLKSKLEHANKENSDVIALwKSKLETAIA 632
Cdd:TIGR02169 828 KEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQ-LRELERKIE 906
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 633 SHQQAMEELKVSFSKGLGTETAEFAELKtQIEKMRLDYQHEIENLQNQQD--SERAAHAKEMEALRAKLMKVIKEKENSL 710
Cdd:TIGR02169 907 ELEAQIEKKRKRLSELKAKLEALEEELS-EIEDPKGEDEEIPEEELSLEDvqAELQRVEEEIRALEPVNMLAIQEYEEVL 985
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 530401713 711 EAirskldkaedqhLVEMEDTLNKLQEAEikvKELEVLQAKCNEQTK 757
Cdd:TIGR02169 986 KR------------LDELKEKRAKLEEER---KAILERIEEYEKKKR 1017
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
831-1060 |
1.66e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.07 E-value: 1.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 831 KLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFR 910
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 911 EKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELR-----LKERdVEELQLKLTKANENASFLQKSIEDMTvK 985
Cdd:COG4942 101 AQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKylapaRREQ-AEELRADLAELAALRAELEAERAELE-A 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 530401713 986 AEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYERATSETKTKHEEILQNLQKTLLDTEDKLKG 1060
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKG 253
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
507-1107 |
2.10e-06 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 52.45 E-value: 2.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 507 SEKSRIMELEKDLALRVQEVAELRRRLE---SNKPAGDVDMSLSLLQEISSLQEKLEVTRTdhqreiTSLKEHFgaREET 583
Cdd:pfam07111 27 TQRPTVTMWEQDVSGDGQGPGRRGRSLElegSQALSQQAELISRQLQELRRLEEEVRLLRE------TSLQQKM--RLEA 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 584 HQKEIKALYTATEKLSKENESLKSKLEHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKGLGTETAEFAELKTQI 663
Cdd:pfam07111 99 QAMELDALAVAEKAGQAEAEGLRAALAGAEMVRKNLEEGSQRELEEIQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSL 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 664 EKMRLDYQHEIENL---QNQQDSERAAHAKEMEALRAKLMKVIKEKENSLEAIRSKLDKAE-DQHLVEMEDTLNKLQEAE 739
Cdd:pfam07111 179 NSLETKRAGEAKQLaeaQKEAELLRKQLSKTQEELEAQVTLVESLRKYVGEQVPPEVHSQTwELERQELLDTMQHLQEDR 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 740 IKVKE-LEVLQAKCNEQTKVI----------------------DNFTSQLKATEEKLLDLDALRKASS-EGKSEMKKLRQ 795
Cdd:pfam07111 259 ADLQAtVELLQVRVQSLTHMLalqeeeltrkiqpsdslepefpKKCRSLLNRWREKVFALMVQLKAQDlEHRDSVKQLRG 338
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 796 QLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQRSMQ 875
Cdd:pfam07111 339 QVAELQEQVTSQSQEQAILQRALQDKAAEVEVERMSAKGLQMELSRAQEARRRQQQQTASAEEQLKFVVNAMSSTQIWLE 418
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 876 ETVNKLHQKEEQF----NMLSSDLEKLRENLADMEAKFREKDEREEQ--LIKAKEKLENDIAEIMKMSGDNSSQLtkmND 949
Cdd:pfam07111 419 TTMTRVEQAVARIpslsNRLSYAVRKVHTIKGLMARKVALAQLRQEScpPPPPAPPVDADLSLELEQLREERNRL---DA 495
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 950 ELRLKERDVeelQLKLTKANENASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARY 1029
Cdd:pfam07111 496 ELQLSAHLI---QQEVGRAREQGEAERQQLSEVAQQLEQELQRAQESLASVGQQLEVARQGQQESTEEAASLRQELTQQQ 572
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 530401713 1030 ERATSETKTKHEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQADKAKaaQTAEDAMQIMEQMTKEKTETLA 1107
Cdd:pfam07111 573 EIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHRATQEK--ERNQELRRLQDEARKEEGQRLA 648
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
843-1090 |
2.46e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.69 E-value: 2.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 843 SQVKETLEKELQILKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKA 922
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 923 KEKLENDIAEIMKMSGDNSSQLTKMndeLRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQEAAkkheeekk 1002
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLA---LLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRA-------- 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1003 elerklsDLEKKMETSHNQCQELKARYERATSEtKTKHEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQADKA 1082
Cdd:COG4942 168 -------ELEAERAELEALLAELEEERAALEAL-KAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
....*...
gi 530401713 1083 KAAQTAED 1090
Cdd:COG4942 240 AERTPAAG 247
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
474-1255 |
2.54e-06 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 52.13 E-value: 2.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 474 HARIKELEQSLlfektkaDKLQRELEDTRVATVSEKSRIM-----ELEKDLALRVQEVAELRRRLESNKPAGDVDMSLSL 548
Cdd:pfam10174 2 QAQLRDLQREN-------ELLRRELDIKESKLGSSMNSIKtfwspELKKERALRKEEAARISVLKEQYRVTQEENQHLQL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 549 lqEISSLQEKLEVTR-------TDHQREITSLKEHFGAREEThQKEIKALYTATEKLSKENESLKSKLEHANKEnsdvIA 621
Cdd:pfam10174 75 --TIQALQDELRAQRdlnqllqQDFTTSPVDGEDKFSTPELT-EENFRRLQSEHERQAKELFLLRKTLEEMELR----IE 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 622 LWKSKLETAIASHQQAMEELKvsfSKGLGTETAEFAELKTQ---IEKMRLDY------QHEIENLQNQQDSERAAHAKEM 692
Cdd:pfam10174 148 TQKQTLGARDESIKKLLEMLQ---SKGLPKKSGEEDWERTRriaEAEMQLGHlevlldQKEKENIHLREELHRRNQLQPD 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 693 EALRAKLMKVIKEKENSLEAIRSKLDKAEDQHLVEMEDTLNKLQEAEIKVKELEVLQAKCNEQTKVIDNFTSQLKATEEK 772
Cdd:pfam10174 225 PAKTKALQTVIEMKDTKISSLERNIRDLEDEVQMLKTNGLLHTEDREEEIKQMEVYKSHSKFMKNKIDQLKQELSKKESE 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 773 LL----DLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAesskassITRELQGRELKLTNLQENLSEVSQVKET 848
Cdd:pfam10174 305 LLalqtKLETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDA-------LRLRLEEKESFLNKKTKQLQDLTEEKST 377
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 849 LEKELQILKEKfaeaseeavsvqrsmqetvnkLHQKEEQFNMLSSDLEKLRENLadmeakfREKDEREEQLIKAKEKLEN 928
Cdd:pfam10174 378 LAGEIRDLKDM---------------------LDVKERKINVLQKKIENLQEQL-------RDKDKQLAGLKERVKSLQT 429
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 929 DiaeimkmSGDNSSQLTKMNDELRLKERDVEELQLkltkanenasflQKSIEDmTVKAEQSQQEAAKKHeeekkelerkl 1008
Cdd:pfam10174 430 D-------SSNTDTALTTLEEALSEKERIIERLKE------------QRERED-RERLEELESLKKENK----------- 478
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1009 sDLEKKMETSHNQCQElkaryeRATSETKTKheEILQNLQKTLLDTEDKLKGAREEnsgLLQELEELRKQADKAKAAQTA 1088
Cdd:pfam10174 479 -DLKEKVSALQPELTE------KESSLIDLK--EHASSLASSGLKKDSKLKSLEIA---VEQKKEECSKLENQLKKAHNA 546
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1089 EDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENnLKNVEELNKSKElltvenQKMEEFRKEIETLKQAAAQK 1168
Cdd:pfam10174 547 EEAVRTNPEINDRIRLLEQEVARYKEESGKAQAEVERLLGI-LREVENEKNDKD------KKIAELESLTLRQMKEQNKK 619
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1169 SQQLSALQ-EENVKLAEELGRSRDEvtshqKLEEERSVLNNQLLEMKKRESKFIKDADEEKASLqksiSITSALLTEKDA 1247
Cdd:pfam10174 620 VANIKHGQqEMKKKGAQLLEEARRR-----EDNLADNSQQLQLEELMGALEKTRQELDATKARL----SSTQQSLAEKDG 690
|
....*...
gi 530401713 1248 ELEKLRNE 1255
Cdd:pfam10174 691 HLTNLRAE 698
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
926-1268 |
3.77e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.61 E-value: 3.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 926 LENDIAEIMKMSG--------------DNSSQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEdmtvKAEQSQQ 991
Cdd:TIGR02169 140 LQGDVTDFISMSPverrkiideiagvaEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRERE----KAERYQA 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 992 EAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYERATSETKTKHEEILQnLQKTLLDTEDKLKGAREENSGLLQE 1071
Cdd:TIGR02169 216 LLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEE-IEQLLEELNKKIKDLGEEEQLRVKE 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1072 -LEELrkQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKElltvenqK 1150
Cdd:TIGR02169 295 kIGEL--EAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKE-------E 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1151 MEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVTS----HQKLEEERSVLNNQLLEMKKRESKFI---KD 1223
Cdd:TIGR02169 366 LEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRlqeeLQRLSEELADLNAAIAGIEAKINELEeekED 445
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 530401713 1224 ADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKS 1268
Cdd:TIGR02169 446 KALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQR 490
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
426-1353 |
1.06e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 50.44 E-value: 1.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 426 ELLNQLEEEKRKVEDLQFRVEEESITKGDLEQksqiSEDPENTQTKLE---HARIKELEQSLLFEKTKADKLQRELEDtr 502
Cdd:TIGR01612 901 EINKSIEEEYQNINTLKKVDEYIKICENTKES----IEKFHNKQNILKeilNKNIDTIKESNLIEKSYKDKFDNTLID-- 974
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 503 vatvseksRIMELEK---DLAL-----RVQEVAELRRRLESNKPAGDVDMSLSLLQEISSLQEKLEVTRTDHQREITSLK 574
Cdd:TIGR01612 975 --------KINELDKafkDASLndyeaKNNELIKYFNDLKANLGKNKENMLYHQFDEKEKATNDIEQKIEDANKNIPNIE 1046
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 575 ehfgareethqkeiKALYTATEKLSKENESLKSK-LEHANKENSDvialwksKLETAIASHQQAMEELKVSFSKGLGTE- 652
Cdd:TIGR01612 1047 --------------IAIHTSIYNIIDEIEKEIGKnIELLNKEILE-------EAEINITNFNEIKEKLKHYNFDDFGKEe 1105
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 653 ----TAEFAELKTQIEKMRLDYQHEIENLQN-QQDSERaaHAKEMEALRAKLMKV---------IKEKENSLEAIRSKLD 718
Cdd:TIGR01612 1106 nikyADEINKIKDDIKNLDQKIDHHIKALEEiKKKSEN--YIDEIKAQINDLEDVadkaisnddPEEIEKKIENIVTKID 1183
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 719 KAEDQHlVEMEDTLNKLQEAEIKVKELEVLQA---------------KCNEQTKVIDNftsQLKATEEKLLDLDALRKAS 783
Cdd:TIGR01612 1184 KKKNIY-DEIKKLLNEIAEIEKDKTSLEEVKGinlsygknlgklfleKIDEEKKKSEH---MIKAMEAYIEDLDEIKEKS 1259
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 784 SEGKSEMK-KLRQQLEAAEKQIKHLEIEKNAESSKASSIT-RELQGRELKLTNLQENLSEVSQVKETLEKELqilkekfA 861
Cdd:TIGR01612 1260 PEIENEMGiEMDIKAEMETFNISHDDDKDHHIISKKHDENiSDIREKSLKIIEDFSEESDINDIKKELQKNL-------L 1332
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 862 EASEEAVSVQRSMQETVNklhqkeeQFNMLSsdLEKLReNLADMEAKFREKDEREEQLIKakEKLENDIAEIMKMSGDNS 941
Cdd:TIGR01612 1333 DAQKHNSDINLYLNEIAN-------IYNILK--LNKIK-KIIDEVKEYTKEIEENNKNIK--DELDKSEKLIKKIKDDIN 1400
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 942 SQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQEAakkheeekkelerklSDLEKKMETSHNQ 1021
Cdd:TIGR01612 1401 LEECKSKIESTLDDKDIDECIKKIKELKNHILSEESNIDTYFKNADENNENV---------------LLLFKNIEMADNK 1465
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1022 CQE-LKARYERATSETKTKHEEILQNLqktlldteDKLKGAREEnsgllqeleelrkqADKAKAAqtAEDAMQIMEQMTK 1100
Cdd:TIGR01612 1466 SQHiLKIKKDNATNDHDFNINELKEHI--------DKSKGCKDE--------------ADKNAKA--IEKNKELFEQYKK 1521
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1101 EKTETLasledTKQTNAKLQNELDTLKENNLKNVEELNKSKELLTVE----NQKMEEFRKEIETLKQAAAQKSQQLSALQ 1176
Cdd:TIGR01612 1522 DVTELL-----NKYSALAIKNKFAKTKKDSEIIIKEIKDAHKKFILEaeksEQKIKEIKKEKFRIEDDAAKNDKSNKAAI 1596
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1177 eenvklaeelgrsrDEVTSHQKLEeersvlnNQLLEMKKRESKfIKDADEEKASLQKSISitsalltekdaeleklrnev 1256
Cdd:TIGR01612 1597 --------------DIQLSLENFE-------NKFLKISDIKKK-INDCLKETESIEKKIS-------------------- 1634
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1257 tvlrgenasakslhsvvqtlesdkvklELKVKNLELQLKENKRQLSSSSGNTDTQADEDERAQESQQMIDFLNSVI---- 1332
Cdd:TIGR01612 1635 ---------------------------SFSIDSQDTELKENGDNLNSLQEFLESLKDQKKNIEDKKKELDELDSEIekie 1687
|
970 980
....*....|....*....|...
gi 530401713 1333 --VDLQRKNQDLKMkVEMMSEAA 1353
Cdd:TIGR01612 1688 idVDQHKKNYEIGI-IEKIKEIA 1709
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
879-1351 |
1.18e-05 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 49.74 E-value: 1.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 879 NKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDV 958
Cdd:pfam05557 16 NEKKQMELEHKRARIELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNRLKKKYLEALNKKLNEK 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 959 EElqlKLTKANENASFLQKSIEDMTVKAEQSQQeaakkheeekkelerKLSDLEKKMETSHNQCQELKARYERAtsetkT 1038
Cdd:pfam05557 96 ES---QLADAREVISCLKNELSELRRQIQRAEL---------------ELQSTNSELEELQERLDLLKAKASEA-----E 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1039 KHEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQadKAKAAQTAEdamqiMEQMTKEKTETLASLEDTKQTNAK 1118
Cdd:pfam05557 153 QLRQNLEKQQSSLAEAEQRIKELEFEIQSQEQDSEIVKNS--KSELARIPE-----LEKELERLREHNKHLNENIENKLL 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1119 LQNELDTLKeNNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQK-------SQQLSALQEENVKLAEELG---- 1187
Cdd:pfam05557 226 LKEEVEDLK-RKLEREEKYREEAATLELEKEKLEQELQSWVKLAQDTGLNlrspedlSRRIEQLQQREIVLKEENSslts 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1188 RSRDEVTSHQKLEEERSVLNNQLLEMKKReskfIKDADEEKASLQKSISITSallTEKDAELEKLRNEVTVLRGENASAK 1267
Cdd:pfam05557 305 SARQLEKARRELEQELAQYLKKIEDLNKK----LKRHKALVRRLQRRVLLLT---KERDGYRAILESYDKELTMSNYSPQ 377
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1268 SLHSVvqtLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDTQADEDE----RAQESQQMIDFLNSVIVDLQRKNQDLK 1343
Cdd:pfam05557 378 LLERI---EEAEDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLERElqalRQQESLADPSYSKEEVDSLRRKLETLE 454
|
....*...
gi 530401713 1344 MKVEMMSE 1351
Cdd:pfam05557 455 LERQRLRE 462
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
336-536 |
1.30e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 1.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 336 LTETSSRYARKISGTTALQEALKEKQQHIEQLlAERDLERAEVAKATSHVGEIEQELALARDGHDQhVLELEAKMDQLRT 415
Cdd:COG4913 622 LEEELAEAEERLEALEAELDALQERREALQRL-AEYSWDEIDVASAEREIAELEAELERLDASSDD-LAALEEQLEELEA 699
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 416 MVEAADREKVELLNQLEEEKRKVEDLQFRVEEesiTKGDLEQKSQISEDPENT--QTKLEHARIKELEQSLLF------- 486
Cdd:COG4913 700 ELEELEEELDELKGEIGRLEKELEQAEEELDE---LQDRLEAAEDLARLELRAllEERFAAALGDAVERELREnleerid 776
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 530401713 487 -EKTKADKLQRELEDTRVATVSE-KSRIMELEKDLAlRVQEVAELRRRLESN 536
Cdd:COG4913 777 aLRARLNRAEEELERAMRAFNREwPAETADLDADLE-SLPEYLALLDRLEED 827
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
764-1321 |
1.77e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 49.33 E-value: 1.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 764 SQLKATEEKLLD----LDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENL 839
Cdd:pfam05483 99 AELKQKENKLQEnrkiIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLCNLLKETCARSAEKTKKYEYER 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 840 SEVSQVKETLEKELQILKEKFAEA---------------SEEAVSVQRSMQETVNKLHQKEEQFNML------------- 891
Cdd:pfam05483 179 EETRQVYMDLNNNIEKMILAFEELrvqaenarlemhfklKEDHEKIQHLEEEYKKEINDKEKQVSLLliqitekenkmkd 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 892 -SSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEEL-------QL 963
Cdd:pfam05483 259 lTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLteekeaqME 338
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 964 KLTKANENASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKmETSHNQCQELKARYERATSETKT--KHE 1041
Cdd:pfam05483 339 ELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKK-SSELEEMTKFKNNKEVELEELKKilAED 417
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1042 EILQNLQKTLLDTEDKLKGAREENSGLLQELE-ELRKQADKAKAAQTAED--AMQIMEQMTKEKTETLASLEDTKQTNaK 1118
Cdd:pfam05483 418 EKLLDEKKQFEKIAEELKGKEQELIFLLQAREkEIHDLEIQLTAIKTSEEhyLKEVEDLKTELEKEKLKNIELTAHCD-K 496
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1119 LQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEEnvklaeeLGRSRDEVTSHQK 1198
Cdd:pfam05483 497 LLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREE-------FIQKGDEVKCKLD 569
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1199 LEEERSVLNNQLLEMKKRESKFIKDADEekaSLQKSISITSALLTEKDAELEKLRNEVTvlrgenASAKSLHSvvqtles 1278
Cdd:pfam05483 570 KSEENARSIEYEVLKKEKQMKILENKCN---NLKKQIENKNKNIEELHQENKALKKKGS------AENKQLNA------- 633
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 530401713 1279 dkvkLELKVKNLELQLKENKRQLSSSSGNTDTQADEDERAQES 1321
Cdd:pfam05483 634 ----YEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEK 672
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1080-1340 |
1.78e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 49.24 E-value: 1.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1080 DKAKAAQTAEDAMQIMEQMTKEktetlASLEDTKQTNAKLQNELDTLKennlknveelnksKELLTVEnQKMEEFRKE-- 1157
Cdd:COG3206 146 DPELAAAVANALAEAYLEQNLE-----LRREEARKALEFLEEQLPELR-------------KELEEAE-AALEEFRQKng 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1158 IETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVTSHQKLEEERSVLNNQLLEmkkreSKFIKDADEEKASLQKSISI 1237
Cdd:COG3206 207 LVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQ-----SPVIQQLRAQLAELEAELAE 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1238 TSALLTEKDAELEKLRNEVTVLRGEnaSAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDTQADEDER 1317
Cdd:COG3206 282 LSARYTPNHPDVIALRAQIAALRAQ--LQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLERE 359
|
250 260
....*....|....*....|...
gi 530401713 1318 AQESQQMIDFLnsvivdLQRKNQ 1340
Cdd:COG3206 360 VEVARELYESL------LQRLEE 376
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
777-990 |
1.81e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 49.24 E-value: 1.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 777 DALRKASSEGKSEMKKLRQQLEAAEKQIKHLeieknAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQIL 856
Cdd:COG3206 171 EEARKALEFLEEQLPELRKELEEAEAALEEF-----RQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAAL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 857 KEKFAEASEEAVSVQRS--MQETVNKLHQKEEQFNMLSS-------DLEKLRENLADMEAKFREKDEREEQLIKAK-EKL 926
Cdd:COG3206 246 RAQLGSGPDALPELLQSpvIQQLRAQLAELEAELAELSArytpnhpDVIALRAQIAALRAQLQQEAQRILASLEAElEAL 325
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 530401713 927 ENDIAEIMKMSGDNSSQLTKMNDelrlKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQ 990
Cdd:COG3206 326 QAREASLQAQLAQLEARLAELPE----LEAELRRLEREVEVARELYESLLQRLEEARLAEALTV 385
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
480-1082 |
3.27e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 3.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 480 LEQSLLFEKtkADKLQ---RELEDTRVATVSEKSRIMELE--KDLALRVQEVAELRRRLESNKPAGDVDMSLSLLQEISS 554
Cdd:COG4913 218 LEEPDTFEA--ADALVehfDDLERAHEALEDAREQIELLEpiRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 555 LQEKLEVTRTDHQREITSLKehfgAREETHQKEIKALYTATEKLSKEN-ESLKSKLEHANKEnsdvialwKSKLETAIAS 633
Cdd:COG4913 296 ELEELRAELARLEAELERLE----ARLDALREELDELEAQIRGNGGDRlEQLEREIERLERE--------LEERERRRAR 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 634 HQQAMEELKVSfskgLGTETAEFAELKTQIEKMRLDYQHEIENLQNQQDSERAAHAKEMEALRAklmkviKEKE-NSLEA 712
Cdd:COG4913 364 LEALLAALGLP----LPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRE------LEAEiASLER 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 713 IRSKLdkaeDQHLVEMEDTLNklQEAEIKVKEL----EVLQAKCNEQ---------------------------TKVIDN 761
Cdd:COG4913 434 RKSNI----PARLLALRDALA--EALGLDEAELpfvgELIEVRPEEErwrgaiervlggfaltllvppehyaaaLRWVNR 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 762 --FTSQLKATEEKLLDLDALRKASSEG-----------------KSEMKKLR--------QQLEAAEK------QIKHLE 808
Cdd:COG4913 508 lhLRGRLVYERVRTGLPDPERPRLDPDslagkldfkphpfrawlEAELGRRFdyvcvdspEELRRHPRaitragQVKGNG 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 809 I--EKNAESSKAS------SITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEAS--EEAVSVQRSMQETV 878
Cdd:COG4913 588 TrhEKDDRRRIRSryvlgfDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQrlAEYSWDEIDVASAE 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 879 NKLHQKEEQFNML---SSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKE 955
Cdd:COG4913 668 REIAELEAELERLdasSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLEL 747
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 956 RDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQeaakkheeekkeleRKLSDLEKKMETsHNQCQELKARYERATSE 1035
Cdd:COG4913 748 RALLEERFAAALGDAVERELRENLEERIDALRARLN--------------RAEEELERAMRA-FNREWPAETADLDADLE 812
|
650 660 670 680
....*....|....*....|....*....|....*....|....*...
gi 530401713 1036 TKTKHEEILQNLQKT-LLDTEDKLKGAREENSGllQELEELRKQADKA 1082
Cdd:COG4913 813 SLPEYLALLDRLEEDgLPEYEERFKELLNENSI--EFVADLLSKLRRA 858
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
355-810 |
3.74e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.23 E-value: 3.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 355 EALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQHvlELEAKMDQLRTMVEAADREKVELLNQLEEE 434
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLL--PLYQELEALEAELAELPERLEELEERLEEL 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 435 KRKVEDLQFRVEEESITKGDLEQKSQisEDPENTQTKLEHA--RIKELEQSLLFEKTKADKLQRELEDTRvatvsekSRI 512
Cdd:COG4717 159 RELEEELEELEAELAELQEELEELLE--QLSLATEEELQDLaeELEELQQRLAELEEELEEAQEELEELE-------EEL 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 513 MELEKDLalrvqEVAELRRRLESNKPAGDVDMSLSLLQEISSLQEKLEVTRTDHQREITSL----KEHFGAREETHQKEI 588
Cdd:COG4717 230 EQLENEL-----EAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLlallFLLLAREKASLGKEA 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 589 KALYTATEKLSKENESLKSKLEHANKENSDVIALWKSKLETaIASHQQAMEELkvsfskglgtetaefAELKTQIEkmRL 668
Cdd:COG4717 305 EELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDR-IEELQELLREA---------------EELEEELQ--LE 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 669 DYQHEIENLQNQqdseraAHAKEMEALRAKLMKviKEKENSLEAIRSKLDKAEDQHLVEMEDTLNKLQEAEIKvKELEVL 748
Cdd:COG4717 367 ELEQEIAALLAE------AGVEDEEELRAALEQ--AEEYQELKEELEELEEQLEELLGELEELLEALDEEELE-EELEEL 437
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 530401713 749 QAKCNEQTKVIDNFTSQLKATEEKLLDLdalrkassEGKSEMKKLRQQLEAAEKQIKHLEIE 810
Cdd:COG4717 438 EEELEELEEELEELREELAELEAELEQL--------EEDGELAELLQELEELKAELRELAEE 491
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
691-976 |
4.02e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.20 E-value: 4.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 691 EMEALRAKLMKVIKEKENSLEAIRSKLDKAEDQHLVEMEDtlNKLQEAEIKVKELEVLQAKCNEQTKVIDNFTSQLKATE 770
Cdd:pfam17380 267 ENEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQEKE--EKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAM 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 771 EKLLDLDALRKasSEGKSEMKKLRQQLEAAE-KQIKHLEIEKNAESSKASSITRELQG-RELKLT------NLQENLSEV 842
Cdd:pfam17380 345 ERERELERIRQ--EERKRELERIRQEEIAMEiSRMRELERLQMERQQKNERVRQELEAaRKVKILeeerqrKIQQQKVEM 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 843 SQVK----ETLEKELQILKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFR-----EKD 913
Cdd:pfam17380 423 EQIRaeqeEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRkilekELE 502
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 530401713 914 EREEQLIKAKEK---LENDIAEimKMSGDNSSQLTKMNDELRLKERDVEE---LQLKLTKANENASFLQ 976
Cdd:pfam17380 503 ERKQAMIEEERKrklLEKEMEE--RQKAIYEEERRREAEEERRKQQEMEErrrIQEQMRKATEERSRLE 569
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
775-1177 |
4.30e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 48.41 E-value: 4.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 775 DLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESS------KASSITRELQGRELKLTNLQENLSEVSQVKET 848
Cdd:COG3096 293 ELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAASDhlnlvqTALRQQEKIERYQEDLEELTERLEEQEEVVEE 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 849 LEKELQILKEKFAEASEEAVSVQRSM---QETVNKLHQKEEQFNMLSSDLEKLR----------ENLADMEAKFREK-DE 914
Cdd:COG3096 373 AAEQLAEAEARLEAAEEEVDSLKSQLadyQQALDVQQTRAIQYQQAVQALEKARalcglpdltpENAEDYLAAFRAKeQQ 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 915 REEQLIKAKEKLenDIAEIMKMSGDNSSQL-TKMNDElrlkerdVEELQlkltkANENASFLQKSIEDMTVKAEQSQQEA 993
Cdd:COG3096 453 ATEEVLELEQKL--SVADAARRQFEKAYELvCKIAGE-------VERSQ-----AWQTARELLRRYRSQQALAQRLQQLR 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 994 AKKheeekkelerklSDLEKKMEtSHNQCQELKARYERATSETKTKHEEI---LQNLQKTLLDTEDKLKGAREENSGLLQ 1070
Cdd:COG3096 519 AQL------------AELEQRLR-QQQNAERLLEEFCQRIGQQLDAAEELeelLAELEAQLEELEEQAAEAVEQRSELRQ 585
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1071 ELEELRKQ----ADKAKAAQTAEDAMQIMEQMTKEktetlaSLEDTKQTNAKLQNELDTLKennlknveELNKSKELLtv 1146
Cdd:COG3096 586 QLEQLRARikelAARAPAWLAAQDALERLREQSGE------ALADSQEVTAAMQQLLERER--------EATVERDEL-- 649
|
410 420 430
....*....|....*....|....*....|.
gi 530401713 1147 eNQKMEEFRKEIETLKQAAAQKSQQLSALQE 1177
Cdd:COG3096 650 -AARKQALESQIERLSQPGGAEDPRLLALAE 679
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
356-531 |
5.94e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 47.55 E-value: 5.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 356 ALKEKQQHIEQLLAE---RDLERAEVAKATS-----------HVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAAD 421
Cdd:COG2433 347 AYKNKFERVEKKVPPdvdRDEVKARVIRGLSieealeeliekELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLE 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 422 REKVELLNQLEEEKRKVEDLQFRVEEESItkgdlEQKSQISEDPEntQTKLEhARIKELEQSLLFEKTKADKLQRELEDT 501
Cdd:COG2433 427 AEVEELEAELEEKDERIERLERELSEARS-----EERREIRKDRE--ISRLD-REIERLERELEEERERIEELKRKLERL 498
|
170 180 190
....*....|....*....|....*....|.
gi 530401713 502 RvatvseksRIMELE-KDLALRVQEVAELRR 531
Cdd:COG2433 499 K--------ELWKLEhSGELVPVKVVEKFTK 521
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
348-615 |
6.51e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 6.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 348 SGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELAlardghdqhvlELEAKMDQLRTMVEAADREKVEL 427
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLA-----------ALERRIAALARRIRALEQELAAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 428 LNQLEEEKRKVEDLQFRVEeesitkgdlEQKSQISEDPENTQTKLEHARIKeleqsLLFEKTKADKLQRELEDTRVATVS 507
Cdd:COG4942 82 EAELAELEKEIAELRAELE---------AQKEELAELLRALYRLGRQPPLA-----LLLSPEDFLDAVRRLQYLKYLAPA 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 508 EKSRIMELEKDLalrvQEVAELRRRLESNKPAGDvdmslSLLQEISSLQEKLEVTRTDHQREITSLKehfgAREETHQKE 587
Cdd:COG4942 148 RREQAEELRADL----AELAALRAELEAERAELE-----ALLAELEEERAALEALKAERQKLLARLE----KELAELAAE 214
|
250 260
....*....|....*....|....*...
gi 530401713 588 IKALYTATEKLSKENESLKSKLEHANKE 615
Cdd:COG4942 215 LAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1075-1282 |
8.05e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 47.08 E-value: 8.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1075 LRKQADKAKAAQTAEDAMQIMEQMTKE-KTETLASLEDTKQTNAKLQNELD---TLKENNLKNVEE--------LNKSKE 1142
Cdd:PRK12704 24 VRKKIAEAKIKEAEEEAKRILEEAKKEaEAIKKEALLEAKEEIHKLRNEFEkelRERRNELQKLEKrllqkeenLDRKLE 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1143 LLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEEL-GRSRDEVTshqkleeersvlnNQLLEMKKRESKfi 1221
Cdd:PRK12704 104 LLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERIsGLTAEEAK-------------EILLEKVEEEAR-- 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 530401713 1222 kdadEEKASLQKSIsitsalltEKDAELE--KLRNEVTVL---R--GENASAKSLhSVVqTLESDKVK 1282
Cdd:PRK12704 169 ----HEAAVLIKEI--------EEEAKEEadKKAKEILAQaiqRcaADHVAETTV-SVV-NLPNDEMK 222
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
337-1079 |
8.36e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.53 E-value: 8.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 337 TETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLE----RAEVAKATSHVGEIE-QELALARDGHDQHVLELEaKMD 411
Cdd:pfam12128 272 TLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGElsaaDAAVAKDRSELEALEdQHGAFLDADIETAAADQE-QLP 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 412 QLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITK-GDLEQKSQISEDPENTQTKLEHARIKELEQSLlfektk 490
Cdd:pfam12128 351 SWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDiAGIKDKLAKIREARDRQLAVAEDDLQALESEL------ 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 491 ADKLQRELEDTRVATVSEKSRIMELEKDLAlRVQEVAELRRRLESNKpagdvdmslSLLQEISSLQEKLEVTRTDHQREI 570
Cdd:pfam12128 425 REQLEAGKLEFNEEEYRLKSRLGELKLRLN-QATATPELLLQLENFD---------ERIERAREEQEAANAEVERLQSEL 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 571 TSLKEHFGAREETHQKEIKALYTATEKLSKENESLKSK----LEHANKEnsdvIALWKSKLETAIASHQQAMEELKVSFS 646
Cdd:pfam12128 495 RQARKRRDQASEALRQASRRLEERQSALDELELQLFPQagtlLHFLRKE----APDWEQSIGKVISPELLHRTDLDPEVW 570
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 647 KGLGTETAEFAELKTQIEKMRLDYQHEIENlqnQQDSERAAHAKEMEALRAKlmkvIKEKENSLEAIRSKLDKAEdqhlV 726
Cdd:pfam12128 571 DGSVGGELNLYGVKLDLKRIDVPEWAASEE---ELRERLDKAEEALQSAREK----QAAAEEQLVQANGELEKAS----R 639
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 727 EMEDTLNKLQEAEIKVKELEVLQAkcNEQTKVIDNFTSQLKATEEKLLDLDAlrkassegksEMKKLRQQLEAAEKQIKH 806
Cdd:pfam12128 640 EETFARTALKNARLDLRRLFDEKQ--SEKDKKNKALAERKDSANERLNSLEA----------QLKQLDKKHQAWLEEQKE 707
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 807 leieknaesskassitrelQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQRSMQETVNKLHQKEE 886
Cdd:pfam12128 708 -------------------QKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALETWYKRDLASLGVDPD 768
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 887 QFNMLSSDLEKLRENLADMeAKFREKDEREEQLIKAKEKLENDiaeimkmsgdnssqltKMNDELRLKERDVEELQLKLT 966
Cdd:pfam12128 769 VIAKLKREIRTLERKIERI-AVRRQEVLRYFDWYQETWLQRRP----------------RLATQLSNIERAISELQQQLA 831
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 967 KANENASFLQKSIEdMTVKAEQSQQEAAKKHEEEKKELERKLSDLekKMETSHNQCQELKARYERATSETKTKHEEILQN 1046
Cdd:pfam12128 832 RLIADTKLRRAKLE-MERKASEKQQVRLSENLRGLRCEMSKLATL--KEDANSEQAQGSIGERLAQLEDLKLKRDYLSES 908
|
730 740 750
....*....|....*....|....*....|...
gi 530401713 1047 LQKTLLDteDKLKGAREENSGLLQELEELRKQA 1079
Cdd:pfam12128 909 VKKYVEH--FKNVIADHSGSGLAETWESLREED 939
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
710-1253 |
8.36e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.53 E-value: 8.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 710 LEAIRSKLDKAEdQHLVEMEDTLNKLQEAEIKVKELEVLQAKCNEQTKVIDNFTSQLKATEEKLLD--LDALRKASSEGK 787
Cdd:pfam12128 236 IMKIRPEFTKLQ-QEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKekRDELNGELSAAD 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 788 SEMKKLRQQLEAAEKQIKHLEiEKNAESSKASsitrelqgrelkltnlQENLSEVSQVKETLEKELQILKEKfaeaseea 867
Cdd:pfam12128 315 AAVAKDRSELEALEDQHGAFL-DADIETAAAD----------------QEQLPSWQSELENLEERLKALTGK-------- 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 868 vsvQRSMQETVNKLHQKEEQFNmlSSDLEKLRENLADM-EAKFREKDEREEQLikakEKLENDIAEIMKmsgdnsSQLTK 946
Cdd:pfam12128 370 ---HQDVTAKYNRRRSKIKEQN--NRDIAGIKDKLAKIrEARDRQLAVAEDDL----QALESELREQLE------AGKLE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 947 MNDELRLKERDVEELQLKLTKAN-ENASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCqel 1025
Cdd:pfam12128 435 FNEEEYRLKSRLGELKLRLNQATaTPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQA--- 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1026 karyERATSETKTKHEEILQNL---QKTLLDTEDKLKGAREENSGLLQELEELRK-----QADKAKAAQTAE-------- 1089
Cdd:pfam12128 512 ----SRRLEERQSALDELELQLfpqAGTLLHFLRKEAPDWEQSIGKVISPELLHRtdldpEVWDGSVGGELNlygvkldl 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1090 DAMQIME--QMTKEKTETLASLEDTKQTNAKLQNELDtlKENNLKNVEelnkskelltVENQKMEEFRKEiETLKQAAAQ 1167
Cdd:pfam12128 588 KRIDVPEwaASEEELRERLDKAEEALQSAREKQAAAE--EQLVQANGE----------LEKASREETFAR-TALKNARLD 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1168 KSQQLSALQEENVKLAEELGRSRDEV-TSHQKLEEERSVLNNQLLEMKKRESKFIKDADEEK-ASLQKSISITSALLTEK 1245
Cdd:pfam12128 655 LRRLFDEKQSEKDKKNKALAERKDSAnERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKqAYWQVVEGALDAQLALL 734
|
....*...
gi 530401713 1246 DAELEKLR 1253
Cdd:pfam12128 735 KAAIAARR 742
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
654-1153 |
1.04e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 46.66 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 654 AEFAELKTQIEKMRLDY-QHEIENLQNQQDSERAAHA---------KEMEALRAKLMKVIKEKENSLEAIRSKLDKAEdQ 723
Cdd:pfam05557 2 AELIESKARLSQLQNEKkQMELEHKRARIELEKKASAlkrqldresDRNQELQKRIRLLEKREAEAEEALREQAELNR-L 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 724 HLVEMEDTLNKLQEAEIKVKELE----VLQAKCNEQTKVIDNFTSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEA 799
Cdd:pfam05557 81 KKKYLEALNKKLNEKESQLADARevisCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 800 -------AEKQIKHLEIEkNAESSKASSITRELQGRELKLTNLQ----------ENLSEVSQVKETLEKELQILK---EK 859
Cdd:pfam05557 161 qqsslaeAEQRIKELEFE-IQSQEQDSEIVKNSKSELARIPELEkelerlrehnKHLNENIENKLLLKEEVEDLKrklER 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 860 FAEASEEAVSVQRSMQETVNKLHQKEEQFNM----------LSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLEND 929
Cdd:pfam05557 240 EEKYREEAATLELEKEKLEQELQSWVKLAQDtglnlrspedLSRRIEQLQQREIVLKEENSSLTSSARQLEKARRELEQE 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 930 IAEIMKmsgdnssQLTKMNDELRLKERDVEELQLKLTKANENASFLQ---KSIEDMTVKAEQSQQEAAKKHE-------- 998
Cdd:pfam05557 320 LAQYLK-------KIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRailESYDKELTMSNYSPQLLERIEEaedmtqkm 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 999 -EEKKELERKLSDLEKKMETSHNQCQ----ELKARYERATSETKTKHEEILQNLQKTLLDTEDKLKGAREENSGLLQELE 1073
Cdd:pfam05557 393 qAHNEEMEAQLSVAEEELGGYKQQAQtlerELQALRQQESLADPSYSKEEVDSLRRKLETLELERQRLREQKNELEMELE 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1074 ELRKQAD----KAKAAQTAEDAMQIMEQMTKEKTETL-ASLEDTKQTNAKLQNELD-------TLKENNLKNVEELNKSK 1141
Cdd:pfam05557 473 RRCLQGDydpkKTKVLHLSMNPAAEAYQQRKNQLEKLqAEIERLKRLLKKLEDDLEqvlrlpeTTSTMNFKEVLDLRKEL 552
|
570
....*....|..
gi 530401713 1142 ELLTVENQKMEE 1153
Cdd:pfam05557 553 ESAELKNQRLKE 564
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
791-952 |
1.04e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 46.69 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 791 KKLRQQLEAAEKQIKHL--EIEKNAESSKassitrelqgrELKLTNLQEnlsEVSQVKETLEKELqilKEKFAEaseeav 868
Cdd:PRK12704 27 KIAEAKIKEAEEEAKRIleEAKKEAEAIK-----------KEALLEAKE---EIHKLRNEFEKEL---RERRNE------ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 869 svqrsMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREK----DEREEQLIKAKEKLENDIAEIMKMSGDNSSQ- 943
Cdd:PRK12704 84 -----LQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKqqelEKKEEELEELIEEQLQELERISGLTAEEAKEi 158
|
170
....*....|
gi 530401713 944 -LTKMNDELR 952
Cdd:PRK12704 159 lLEKVEEEAR 168
|
|
| CLIP1_ZNF |
pfam16641 |
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of ... |
1378-1395 |
1.25e-04 |
|
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of the cytoplasmic linker protein CLIP1 (CLIP170). It forms a complex with the CAP-Gly domain of Dynactin.
Pssm-ID: 465212 Cd Length: 17 Bit Score: 40.14 E-value: 1.25e-04
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
354-952 |
1.38e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.50 E-value: 1.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 354 QEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALardghDQHVLELEakmdQLRTMVEAADREKVELLNQLEE 433
Cdd:TIGR00618 337 QSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTL-----TQHIHTLQ----QQKTTLTQKLQSLCKELDILQR 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 434 EKRKVEdlqFRVEEESITKGDLeQKSQISEDPENTQTKLEHARIKELEQSLLFEKTKADKLQRELeDTRVATVSEKSRIM 513
Cdd:TIGR00618 408 EQATID---TRTSAFRDLQGQL-AHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSL-KEREQQLQTKEQIH 482
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 514 ELEKDL----ALRVQEVAELRRRLESNKPAGDVDMSLSLLQEISslqeklevtrtdhqreiTSLKEHFGAREETHQKEIK 589
Cdd:TIGR00618 483 LQETRKkavvLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPL-----------------TRRMQRGEQTYAQLETSEE 545
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 590 ALYTATEKLSKENESLKSKLEHANKENSDVIALWKSkLETAIASHQQAMEELKVSFSKGLGTETAEFAELKTQIEKMrld 669
Cdd:TIGR00618 546 DVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNR-SKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKL--- 621
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 670 yQHEIENLQNQQDSERAAH--AKEMEALRAKLMKVIKEKEnSLEAIRSKLDKAEdqhlvemedtlnKLQEAEIKVKELEV 747
Cdd:TIGR00618 622 -QPEQDLQDVRLHLQQCSQelALKLTALHALQLTLTQERV-REHALSIRVLPKE------------LLASRQLALQKMQS 687
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 748 LQAKCNEQTKVIDNFTSQLKATEEKLLDLDALRKASSEGKSEMK-KLRQQLEAAEKQIKHLEiEKNAESSKASSITRELQ 826
Cdd:TIGR00618 688 EKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGsDLAAREDALNQSLKELM-HQARTVLKARTEAHFNN 766
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 827 GREL-----KLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNmlsSDLEKLREN 901
Cdd:TIGR00618 767 NEEVtaalqTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFL---SRLEEKSAT 843
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 530401713 902 LADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELR 952
Cdd:TIGR00618 844 LGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLNGINQIKIQFDGDALI 894
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
1128-1376 |
1.70e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 46.10 E-value: 1.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1128 ENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAA----AQKSQQLSALQEENVKLAEELGRSRDEVTSHQKLEEER 1203
Cdd:COG5185 232 EEALKGFQDPESELEDLAQTSDKLEKLVEQNTDLRLEKlgenAESSKRLNENANNLIKQFENTKEKIAEYTKSIDIKKAT 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1204 SVLNNQLLEMKKrESKFIKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKS---LHSVVQTLESDK 1280
Cdd:COG5185 312 ESLEEQLAAAEA-EQELEESKRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEVELSKSseeLDSFKDTIESTK 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1281 VKLELKVKNLELQLKENKRQLSSSSGNTDTQADEDERAqesqqmIDFLNSVIVDLQRKNQDL-KMKVEMMSEAALNGNGD 1359
Cdd:COG5185 391 ESLDEIPQNQRGYAQEILATLEDTLKAADRQIEELQRQ------IEQATSSNEEVSKLLNELiSELNKVMREADEESQSR 464
|
250
....*....|....*..
gi 530401713 1360 DLNNYDSDDQEKQSKKK 1376
Cdd:COG5185 465 LEEAYDEINRSVRSKKE 481
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
670-1184 |
1.92e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 46.05 E-value: 1.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 670 YQHEIENLQNQQDSERAAHA---KEMEALRAKLMKVIKEKENSLEAIRSKLDKAEDQHLVEME--DTLNKLQEAEIKVKE 744
Cdd:PRK01156 195 SNLELENIKKQIADDEKSHSitlKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEikTAESDLSMELEKNNY 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 745 LEVLQAKCNEQTkvidnfTSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEieknaESSKASSITRE 824
Cdd:PRK01156 275 YKELEERHMKII------NDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEINKYHAIIKKLS-----VLQKDYNDYIK 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 825 LQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEavsVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLAD 904
Cdd:PRK01156 344 KKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKN---IERMSAFISEILKIQEIDPDAIKKELNEINVKLQD 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 905 MEAKFREKDEREEQLIKAKEKLENDiAEIMKMSGDNSSQLTKMNDELrlKERDVEELQLKLTKANENASFLQKSIEDMTV 984
Cdd:PRK01156 421 ISSKVSSLNQRIRALRENLDELSRN-MEMLNGQSVCPVCGTTLGEEK--SNHIINHYNEKKSRLEEKIREIEIEVKDIDE 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 985 KAEQSQQEAAKKHEEEKkelerklsdleKKMETSHNQCQELKARYERatsetktkheeiLQNLQKTLLDTEDKLKGAREE 1064
Cdd:PRK01156 498 KIVDLKKRKEYLESEEI-----------NKSINEYNKIESARADLED------------IKIKINELKDKHDKYEEIKNR 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1065 -NSGLLQELEELRKQADKAKAAQTAEDAMQIMEQmTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEE----LNK 1139
Cdd:PRK01156 555 yKSLKLEDLDSKRTSWLNALAVISLIDIETNRSR-SNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENeannLNN 633
|
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 530401713 1140 SKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAE 1184
Cdd:PRK01156 634 KYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRIND 678
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1039-1229 |
1.97e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 46.07 E-value: 1.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1039 KHEEILQNLQKtLLDTEDKLKGAREENSGLLQELEELRKQADKAKAAQTAEDAMQImEQMTKEKTETLASLEDTKQtnaK 1118
Cdd:PRK05771 44 RLRKLRSLLTK-LSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKI-EKEIKELEEEISELENEIK---E 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1119 LQNELDTLK-----------------------------------ENNLKNVEELNKSKE----LLTVENQKMEEFRKEIE 1159
Cdd:PRK05771 119 LEQEIERLEpwgnfdldlslllgfkyvsvfvgtvpedkleelklESDVENVEYISTDKGyvyvVVVVLKELSDEVEEELK 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1160 -------------TLKQAAAQKSQQLSALQEENVKLAEELGRSRdevtshQKLEEERSVLNNQLLEMKKRESKFIKDADE 1226
Cdd:PRK05771 199 klgferleleeegTPSELIREIKEELEEIEKERESLLEELKELA------KKYLEELLALYEYLEIELERAEALSKFLKT 272
|
...
gi 530401713 1227 EKA 1229
Cdd:PRK05771 273 DKT 275
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
891-1248 |
2.50e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.73 E-value: 2.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 891 LSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANE 970
Cdd:pfam02463 147 IAMMKPERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYL 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 971 NASFLQKSIEdmtvKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQcQELKARYERATSETKTKHEEILQNLQKT 1050
Cdd:pfam02463 227 LYLDYLKLNE----ERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKE-NKEEEKEKKLQEEELKLLAKEEEELKSE 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1051 LLDTEDKLKGAREENSGLLQELEELRKQADKAKaaQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENN 1130
Cdd:pfam02463 302 LLKLERRKVDDEEKLKESEKEKKKAEKELKKEK--EEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKK 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1131 LKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVTSHQKLEEERSVLNNQL 1210
Cdd:pfam02463 380 KLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELK 459
|
330 340 350
....*....|....*....|....*....|....*...
gi 530401713 1211 LEMKKRESKFIKDADEEKASLQKSISITSALLTEKDAE 1248
Cdd:pfam02463 460 LLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEE 497
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
658-897 |
2.58e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 45.39 E-value: 2.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 658 ELKTQIEKMRLDYQHEIENLQNQQDSERAAHAKEMEALrAKLMKVIKEKENSLEAIRSKLDKAEDQ---HLVEMEDT--- 731
Cdd:PHA02562 178 ELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENI-ARKQNKYDELVEEAKTIKAEIEELTDEllnLVMDIEDPsaa 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 732 LNKLQEAEIKVK-ELEVLQ--AKCNEQTKVIDNFTSQLKATEEKLldldalrkasSEGKSEMKKLRQQLEAAEKQIKHLE 808
Cdd:PHA02562 257 LNKLNTAAAKIKsKIEQFQkvIKMYEKGGVCPTCTQQISEGPDRI----------TKIKDKLKELQHSLEKLDTAIDELE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 809 iEKNAESSKASSITRELQGrelKLTNLQENLS-EVSQVKEtLEKELQILKEKFAEASEEAVSVQRSMQETVNKL--HQKE 885
Cdd:PHA02562 327 -EIMDEFNEQSKKLLELKN---KISTNKQSLItLVDKAKK-VKAAIEELQAEFVDNAEELAKLQDELDKIVKTKseLVKE 401
|
250
....*....|..
gi 530401713 886 EQFNMLSSDLEK 897
Cdd:PHA02562 402 KYHRGIVTDLLK 413
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
455-932 |
2.65e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 2.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 455 LEQKSQISEDPENTQTKLEHARIKELEQSLLFEKTKADKLQRELEdtrvatvsEKSRIMELEKDLALRVQEVAELRRRLE 534
Cdd:COG4717 51 LEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQE--------ELEELEEELEELEAELEELREELEKLE 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 535 SNKPAgdvdmsLSLLQEISSLQEKLEvtrtDHQREITSLKEHFGAREETHQKEikalytatEKLSKENESLKSKLEHANK 614
Cdd:COG4717 123 KLLQL------LPLYQELEALEAELA----ELPERLEELEERLEELRELEEEL--------EELEAELAELQEELEELLE 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 615 ENSdviALWKSKLETAIASHQQAMEELKvsfskglgTETAEFAELKTQIEKMRLDYQHEIENLQNQQDSERAAHAKEMEA 694
Cdd:COG4717 185 QLS---LATEEELQDLAEELEELQQRLA--------ELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLL 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 695 LRAKLMKVIKEKENSLEAI----------------------RSKLDKAEDQHLVEMEDTLNKLQEAEIKvKELEVLQAKC 752
Cdd:COG4717 254 IAAALLALLGLGGSLLSLIltiagvlflvlgllallflllaREKASLGKEAEELQALPALEELEEEELE-ELLAALGLPP 332
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 753 NEQTKVIDNFTSQLKATEEKLLDLDALRKassegksemkklRQQLEAAEKQIKHLEIEKNAESSKassitrELQGRELKL 832
Cdd:COG4717 333 DLSPEELLELLDRIEELQELLREAEELEE------------ELQLEELEQEIAALLAEAGVEDEE------ELRAALEQA 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 833 TNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSvqrsmqetvNKLHQKEEQFNMLSSDLEKLRENLADMEAKFR-- 910
Cdd:COG4717 395 EEYQELKEELEELEEQLEELLGELEELLEALDEEELE---------EELEELEEELEELEEELEELREELAELEAELEql 465
|
490 500
....*....|....*....|..
gi 530401713 911 EKDEREEQLIKAKEKLENDIAE 932
Cdd:COG4717 466 EEDGELAELLQELEELKAELRE 487
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
549-961 |
3.09e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 3.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 549 LQEISSLQEKLEVTRTDHQ--REITSLKEHFGAREETHQKEIKALYTATEKLSK--ENESLKSKLEHANKENSDVIALWK 624
Cdd:COG4717 70 LKELKELEEELKEAEEKEEeyAELQEELEELEEELEELEAELEELREELEKLEKllQLLPLYQELEALEAELAELPERLE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 625 sKLETAIASHQQAMEELKvsfskglgTETAEFAELKTQIEKMRLDYQHEIENLQNQQDSERAAHAKEMEALRAKLmkviK 704
Cdd:COG4717 150 -ELEERLEELRELEEELE--------ELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEEL----E 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 705 EKENSLEAIRSKLDKAEDQHlvEMEDTLNKLQEAEIKVK---ELEVLQAKCNEQTKVIDNFTSQLKATEEkLLDLDALRK 781
Cdd:COG4717 217 EAQEELEELEEELEQLENEL--EAAALEERLKEARLLLLiaaALLALLGLGGSLLSLILTIAGVLFLVLG-LLALLFLLL 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 782 ASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGREL--KLTNLQENLSEVSQVKETL-----EKELQ 854
Cdd:COG4717 294 AREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELldRIEELQELLREAEELEEELqleelEQEIA 373
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 855 ILKEKFAEASEEA----VSVQRSMQETVNKLHQKEEQFN---------MLSSDLEKLRENLADMEAKFREKDEREEQLIK 921
Cdd:COG4717 374 ALLAEAGVEDEEElraaLEQAEEYQELKEELEELEEQLEellgeleelLEALDEEELEEELEELEEELEELEEELEELRE 453
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 530401713 922 AKEKLENDIAEIMkmsgdNSSQLTKMNDELRLKERDVEEL 961
Cdd:COG4717 454 ELAELEAELEQLE-----EDGELAELLQELEELKAELREL 488
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
688-1142 |
3.19e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 45.20 E-value: 3.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 688 HAKEMEALRAKLMKVIKEKENSLEAIRSKLDKAEDQ------HLVEMEDTLN-KLQEAEIKVKELEVLQAKCNEQTKVID 760
Cdd:pfam10174 283 HSKFMKNKIDQLKQELSKKESELLALQTKLETLTNQnsdckqHIEVLKESLTaKEQRAAILQTEVDALRLRLEEKESFLN 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 761 NFTSQLK-ATEEKlldldalrkasSEGKSEMKKLRQQLEAAEKQIKHLEieknaesSKASSITRELQGRELKLTNLQENL 839
Cdd:pfam10174 363 KKTKQLQdLTEEK-----------STLAGEIRDLKDMLDVKERKINVLQ-------KKIENLQEQLRDKDKQLAGLKERV 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 840 SEVSQVKETLEKELQILKEKFAEASE--EAVSVQRSMQEtvnklHQKEEQFNMLSSDLEKLRENLADMEakfREKDEREE 917
Cdd:pfam10174 425 KSLQTDSSNTDTALTTLEEALSEKERiiERLKEQRERED-----RERLEELESLKKENKDLKEKVSALQ---PELTEKES 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 918 QLIKAKEKLENDIAEIMKmsgdNSSQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSiEDMTVKAEQSQQEAAKKH 997
Cdd:pfam10174 497 SLIDLKEHASSLASSGLK----KDSKLKSLEIAVEQKKEECSKLENQLKKAHNAEEAVRTN-PEINDRIRLLEQEVARYK 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 998 EEEKKELERKLSDLE--KKMETSHNQCQELKARYERATSETKTKHEEILQNLQktLLDTEDKLKGAreensGLLQELEEL 1075
Cdd:pfam10174 572 EESGKAQAEVERLLGilREVENEKNDKDKKIAELESLTLRQMKEQNKKVANIK--HGQQEMKKKGA-----QLLEEARRR 644
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 530401713 1076 RKQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKE 1142
Cdd:pfam10174 645 EDNLADNSQQLQLEELMGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLRAERRKQLEEILEMKQ 711
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
354-1132 |
3.28e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.42 E-value: 3.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 354 QEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEe 433
Cdd:TIGR00606 300 DEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLE- 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 434 ekrkVEDLQFRVEEESITKGDLEQKSQISEDPENTQTKLeharIKELEQSLLFEKTKADKLQRELedtrvatvSEKSRIM 513
Cdd:TIGR00606 379 ----LDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQL----CADLQSKERLKQEQADEIRDEK--------KGLGRTI 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 514 ELEKDLALRVQEVAELRRRLESNKPAGDVDMsLSLLQEISSLQEKLEVTRTDHQREITSLKEHFGAREETH-QKEIKALY 592
Cdd:TIGR00606 443 ELKKEILEKKQEELKFVIKELQQLEGSSDRI-LELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADlDRKLRKLD 521
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 593 TATEKLSKENESLKSKLEHANKENSDVIALWKSKLETAIASHQQAME-ELKVSFSKGLGTETAEFAELKTQIEKMRLDYQ 671
Cdd:TIGR00606 522 QEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYfPNKKQLEDWLHSKSKEINQTRDRLAKLNKELA 601
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 672 hEIENLQNQQDSERAAHAKEMEALRAKLMKVI--KEKENSLEAIRSKLDKAEDQHLVEMEDTLNKLQEAEIKVKELEVLQ 749
Cdd:TIGR00606 602 -SLEQNKNHINNELESKEEQLSSYEDKLFDVCgsQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCC 680
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 750 AKCN-------EQTKVIDNFTSQLKATEEKLLDLDALRKASSEGKSEMKKL----RQQLEAAEKQIKHLEIEKNAESSKA 818
Cdd:TIGR00606 681 PVCQrvfqteaELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLapgrQSIIDLKEKEIPELRNKLQKVNRDI 760
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 819 SSITRELQGRE--LKLTNLQENLSEVSQ----VKETLEKELQILKEKFAE--ASEEAVSVQRSMQETVNKLHQKEEQFNM 890
Cdd:TIGR00606 761 QRLKNDIEEQEtlLGTIMPEEESAKVCLtdvtIMERFQMELKDVERKIAQqaAKLQGSDLDRTVQQVNQEKQEKQHELDT 840
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 891 LSSDLEKLRENLadmeakfrekDEREEQLIKAKEKLENDIAEIMKMsGDNSSQLTKMNDELRLKERDVEELQLKLTKANE 970
Cdd:TIGR00606 841 VVSKIELNRKLI----------QDQQEQIQHLKSKTNELKSEKLQI-GTNLQRRQQFEEQLVELSTEVQSLIREIKDAKE 909
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 971 NASFLQKSIEDMtvkaEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYERATSETKTKHEEILQNLQKT 1050
Cdd:TIGR00606 910 QDSPLETFLEKD----QQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQ 985
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1051 LLDTEDKLKGAREENSGLLQELEELRKQADKAKAAQTaedaMQIMEQMTKEKTETLAS---------LEDTKQTNAKLQN 1121
Cdd:TIGR00606 986 LEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLT----LRKRENELKEVEEELKQhlkemgqmqVLQMKQEHQKLEE 1061
|
810
....*....|.
gi 530401713 1122 ELDTLKENNLK 1132
Cdd:TIGR00606 1062 NIDLIKRNHVL 1072
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
900-1277 |
3.31e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 3.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 900 ENLADMEAKFREKDEREEQLIKAKEKLENDIAEImkmsgdnssqltkmnDELRLKERDVEELQLKLTKANENASFLQKSI 979
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEEL---------------EELEAELEELREELEKLEKLLQLLPLYQELE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 980 E-DMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYERATSETKTKHEEILQNLQKTLLDTEDKL 1058
Cdd:COG4717 136 AlEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEEL 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1059 KGAREENSGLLQELEELRKQADKAKAAQTAEDAMQI--------------------------------------MEQMTK 1100
Cdd:COG4717 216 EEAQEELEELEEELEQLENELEAAALEERLKEARLLlliaaallallglggsllsliltiagvlflvlgllallFLLLAR 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1101 EKTETLASLEDTKQ-------TNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQlS 1173
Cdd:COG4717 296 EKASLGKEAEELQAlpaleelEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIA-A 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1174 ALQEENVKLAEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKRESKFIKDADEEkaSLQKSISITSALLTEKDAELEKLR 1253
Cdd:COG4717 375 LLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEE--ELEEELEELEEELEELEEELEELR 452
|
410 420
....*....|....*....|....
gi 530401713 1254 NEVTVLRGENASAKSLHSVVQTLE 1277
Cdd:COG4717 453 EELAELEAELEQLEEDGELAELLQ 476
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1099-1301 |
3.99e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 3.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1099 TKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEE 1178
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1179 NVKLAEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKRESKFIKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTV 1258
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 530401713 1259 LRGENASAKslhsvvQTLESDKVKLELKVKNLELQLKENKRQL 1301
Cdd:COG4942 179 LLAELEEER------AALEALKAERQKLLARLEKELAELAAEL 215
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
971-1352 |
4.62e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.13 E-value: 4.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 971 NASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYERATSETKTKHEEILQNLQKT 1050
Cdd:PTZ00121 1073 KPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAK 1152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1051 LLDTEDKLKGAREENSGLLQE----LEELRK--QADKAKAAQTAEDAMQIMEQMTKE---KTETLASLEDTKQTNAKLQN 1121
Cdd:PTZ00121 1153 RVEIARKAEDARKAEEARKAEdakkAEAARKaeEVRKAEELRKAEDARKAEAARKAEeerKAEEARKAEDAKKAEAVKKA 1232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1122 ELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSalQEENVKLAEELGRS---RDEVTSHQK 1198
Cdd:PTZ00121 1233 EEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELK--KAEEKKKADEAKKAeekKKADEAKKK 1310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1199 LEEERsvlnnQLLEMKKRESKFIKDADEEKASLQKSisitsalltEKDAELEKLRNEVTVLRGENASAKSLHSVVQTLES 1278
Cdd:PTZ00121 1311 AEEAK-----KADEAKKKAEEAKKKADAAKKKAEEA---------KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEA 1376
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 530401713 1279 DKVKLELKVKNLElqlKENKRQLSSSSGNTDTQADEDERAQESQQMIDFLNSViVDLQRKNQDLKMKVEMMSEA 1352
Cdd:PTZ00121 1377 KKKADAAKKKAEE---KKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKK-AEEKKKADEAKKKAEEAKKA 1446
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
490-956 |
4.63e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.95 E-value: 4.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 490 KADKLQRELEDTRVATVSEKSRIMELEKDLALRVQEVAELRRRLESNKPagdvdmSLSLLQEISSLQEKLEvtrtdhqRE 569
Cdd:PRK04863 287 EALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASD------HLNLVQTALRQQEKIE-------RY 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 570 ITSLKEHFGAREEthQKEIKALytATEKLskenESLKSKLEHANKENSDvialwkskLETAIASHQQAMEELkvsfskgl 649
Cdd:PRK04863 354 QADLEELEERLEE--QNEVVEE--ADEQQ----EENEARAEAAEEEVDE--------LKSQLADYQQALDVQ-------- 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 650 gtetaefaelktqiEKMRLDYQHEIENLQ-----NQQDSERAAHAKEM-EALRAKLmKVIKEKENSLEAIRSKLDKAEDQ 723
Cdd:PRK04863 410 --------------QTRAIQYQQAVQALErakqlCGLPDLTADNAEDWlEEFQAKE-QEATEELLSLEQKLSVAQAAHSQ 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 724 HLVEMEdTLNKLqeaeikVKELEVLQAKcneqtkviDNFTSQLK-ATEEKLLD--LDALRKasseGKSEMKKLRQQLEAA 800
Cdd:PRK04863 475 FEQAYQ-LVRKI------AGEVSRSEAW--------DVARELLRrLREQRHLAeqLQQLRM----RLSELEQRLRQQQRA 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 801 EKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAvSVQRSMQETVNK 880
Cdd:PRK04863 536 ERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARA-PAWLAAQDALAR 614
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 530401713 881 L--HQKEEQFNmlSSDLEKLRENLADMEAKFR-EKDEREEQlikaKEKLEndiAEIMKMSGDNSSQLTKMNdelRLKER 956
Cdd:PRK04863 615 LreQSGEEFED--SQDVTEYMQQLLERERELTvERDELAAR----KQALD---EEIERLSQPGGSEDPRLN---ALAER 681
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
724-925 |
5.24e-04 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 44.30 E-value: 5.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 724 HLVEMEDTLNKLQeAEIKVKELEV---------LQAKCNEQTKVIDNFTSQLKATEEKLLDLD--------ALRKASSEG 786
Cdd:PRK11637 41 HASDNRDQLKSIQ-QDIAAKEKSVrqqqqqrasLLAQLKKQEEAISQASRKLRETQNTLNQLNkqidelnaSIAKLEQQQ 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 787 KSEMKKLRQQLEAAEKQIKH--LEIEKNAESSKASSitREL-------QGRELKLTNLQENLSEVSQVKETLE----KEL 853
Cdd:PRK11637 120 AAQERLLAAQLDAAFRQGEHtgLQLILSGEESQRGE--RILayfgylnQARQETIAELKQTREELAAQKAELEekqsQQK 197
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 530401713 854 QILKEKFAEAS--EEAVSV-QRSMQETVNKLHQKEEQFNMLSSDLEKLRENL--ADMEAKFR-EKDEREEQLIKAKEK 925
Cdd:PRK11637 198 TLLYEQQAQQQklEQARNErKKTLTGLESSLQKDQQQLSELRANESRLRDSIarAEREAKARaEREAREAARVRDKQK 275
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
429-858 |
6.63e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 44.51 E-value: 6.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 429 NQLEEEKRKVEDLQFRVEEesiTKGDLEQKSQISEDPENTQTKLEHARIK------ELEQSLLFEKTKADKLQRELEDTR 502
Cdd:PRK01156 339 NDYIKKKSRYDDLNNQILE---LEGYEMDYNSYLKSIESLKKKIEEYSKNiermsaFISEILKIQEIDPDAIKKELNEIN 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 503 VatvseksRIMELEKDLALRVQEVAELRRRLesnkpagdvdMSLSLLQEISSLQEKLEVTRTDHQRE-ITSLKEHFGARE 581
Cdd:PRK01156 416 V-------KLQDISSKVSSLNQRIRALRENL----------DELSRNMEMLNGQSVCPVCGTTLGEEkSNHIINHYNEKK 478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 582 ETHQKEIKALYTATEKLSKENESLKSKLEHANKENSDVIALWKSKLETAIAShqqaMEELKVSFSKgLGTETAEFAELKT 661
Cdd:PRK01156 479 SRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARAD----LEDIKIKINE-LKDKHDKYEEIKN 553
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 662 QIEKMRLdyqheiENLQNQQDSERAAHAK----EMEALRAK---LMKVIKEKENSLEAIRSKLDKAE---DQHLVEMEDT 731
Cdd:PRK01156 554 RYKSLKL------EDLDSKRTSWLNALAVisliDIETNRSRsneIKKQLNDLESRLQEIEIGFPDDKsyiDKSIREIENE 627
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 732 LNKLQEaeiKVKELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAekqikhleiek 811
Cdd:PRK01156 628 ANNLNN---KYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDA----------- 693
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 530401713 812 NAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKE 858
Cdd:PRK01156 694 KANRARLESTIEILRTRINELSDRINDINETLESMKKIKKAIGDLKR 740
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
776-932 |
7.12e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.99 E-value: 7.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 776 LDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQVKE-------- 847
Cdd:COG1579 19 LDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEyealqkei 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 848 -TLEKELQILKEKFAEASEEAVSVQRSMQETVNKLHQKEEQfnmlssdlekLRENLADMEAKFREKDEREEQLIKAKEKL 926
Cdd:COG1579 99 eSLKRRISDLEDEILELMERIEELEEELAELEAELAELEAE----------LEEKKAELDEELAELEAELEELEAEREEL 168
|
....*.
gi 530401713 927 ENDIAE 932
Cdd:COG1579 169 AAKIPP 174
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
847-965 |
7.20e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 44.08 E-value: 7.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 847 ETLEKELQILKEKfaEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDER----EEQLIKA 922
Cdd:COG2433 376 LSIEEALEELIEK--ELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERierlERELSEA 453
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 530401713 923 KEKLENDI---AEIMKMSGDNsSQLTKmndELRLKERDVEELQLKL 965
Cdd:COG2433 454 RSEERREIrkdREISRLDREI-ERLER---ELEEERERIEELKRKL 495
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1061-1332 |
7.34e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 44.13 E-value: 7.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1061 AREENSGLLQELEELRKQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKS 1140
Cdd:PRK11281 27 ARAASNGDLPTEADVQAQLDALNKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEAL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1141 KElltvENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEelgrsrdevtshqkleeersvLNNQLlemkkreskf 1220
Cdd:PRK11281 107 KD----DNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAE---------------------YNSQL---------- 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1221 ikdadeekASLQKSISITSALLTEKDAELEKLRNEvtvLRGENASAKSLHSvvqtleSDKVKLELKVKNLELQLKENKRQ 1300
Cdd:PRK11281 152 --------VSLQTQPERAQAALYANSQRLQQIRNL---LKGGKVGGKALRP------SQRVLLQAEQALLNAQNDLQRKS 214
|
250 260 270
....*....|....*....|....*....|....*.
gi 530401713 1301 LSSSSGNTDT---QADE-DERAQESQQMIDFLNSVI 1332
Cdd:PRK11281 215 LEGNTQLQDLlqkQRDYlTARIQRLEHQLQLLQEAI 250
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
796-991 |
7.74e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.67 E-value: 7.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 796 QLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQRSMQ 875
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 876 ET-------------------------VNKLHQKE-EQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLEND 929
Cdd:COG3883 97 RSggsvsyldvllgsesfsdfldrlsaLSKIADADaDLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQ 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 530401713 930 IAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQ 991
Cdd:COG3883 177 QAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 238
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
649-864 |
8.20e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 8.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 649 LGTETAEFAELKTQIEKMRLDYQHEIENLQ---NQQDSERAAHAKEMEALRAKLMKV---IKEKENSLEAIRSKLDKAED 722
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEkelAALKKEEKALLKQLAALERRIAALarrIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 723 QhLVEMEDTLNKLQEAeikVKELEVLQAKCNEQTKV------------------IDNFTSQLKATEEKL-LDLDALRKAS 783
Cdd:COG4942 91 E-IAELRAELEAQKEE---LAELLRALYRLGRQPPLalllspedfldavrrlqyLKYLAPARREQAEELrADLAELAALR 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 784 SEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEA 863
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
.
gi 530401713 864 S 864
Cdd:COG4942 247 G 247
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1009-1195 |
1.01e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.28 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1009 SDLEKKMETSHNQCQELKARYERATSETKTKHEEIlQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQADK------A 1082
Cdd:COG3883 33 EAAQAELDALQAELEELNEEYNELQAELEALQAEI-DKLQAEIAEAEAEIEERREELGERARALYRSGGSVSYldvllgS 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1083 KAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKELLtveNQKMEEFRKEIETLK 1162
Cdd:COG3883 112 ESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAEL---EAQQAEQEALLAQLS 188
|
170 180 190
....*....|....*....|....*....|...
gi 530401713 1163 QAAAQKSQQLSALQEENVKLAEELGRSRDEVTS 1195
Cdd:COG3883 189 AEEAAAEAQLAELEAELAAAEAAAAAAAAAAAA 221
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
346-901 |
1.21e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 43.50 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 346 KISGTTALQEALKEKQQHIEQLLAERDLER---AEVAKATSHVGEIEQELALARD--------GHDQHVLELEaKMDQLR 414
Cdd:TIGR01612 1157 DVADKAISNDDPEEIEKKIENIVTKIDKKKniyDEIKKLLNEIAEIEKDKTSLEEvkginlsyGKNLGKLFLE-KIDEEK 1235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 415 TMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEQKSqISEDPEN---TQTKLEHARIKELEQSLL------ 485
Cdd:TIGR01612 1236 KKSEHMIKAMEAYIEDLDEIKEKSPEIENEMGIEMDIKAEMETFN-ISHDDDKdhhIISKKHDENISDIREKSLkiiedf 1314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 486 FEKTKADKLQRELEDTRVATVSEKS-------RIMELEKDLALR-----VQEVAELRRRLESNKP--AGDVDMSLSLLQE 551
Cdd:TIGR01612 1315 SEESDINDIKKELQKNLLDAQKHNSdinlylnEIANIYNILKLNkikkiIDEVKEYTKEIEENNKniKDELDKSEKLIKK 1394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 552 I---SSLQE---KLEVTRTDHQ-----REITSLKEHFGAREETHQKeikalYTATEKLSKENESLKSK-LEHANKENSDV 619
Cdd:TIGR01612 1395 IkddINLEEcksKIESTLDDKDideciKKIKELKNHILSEESNIDT-----YFKNADENNENVLLLFKnIEMADNKSQHI 1469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 620 IalwKSKLETAIASHQQAMEELKVSFSKGLGTETaEFAELKTQIEKMRLDYQheienlQNQQDSERAAHAKEMEALRAKL 699
Cdd:TIGR01612 1470 L---KIKKDNATNDHDFNINELKEHIDKSKGCKD-EADKNAKAIEKNKELFE------QYKKDVTELLNKYSALAIKNKF 1539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 700 MKVIKEKENSLEAIRskldKAEDQHLVEMEDTLNKLQEAEIKVKELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDAL 779
Cdd:TIGR01612 1540 AKTKKDSEIIIKEIK----DAHKKFILEAEKSEQKIKEIKKEKFRIEDDAAKNDKSNKAAIDIQLSLENFENKFLKISDI 1615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 780 RKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKA-----SSITRELQGRELKLTNLQENLSEVSQVKETLEKE-- 852
Cdd:TIGR01612 1616 KKKINDCLKETESIEKKISSFSIDSQDTELKENGDNLNSlqeflESLKDQKKNIEDKKKELDELDSEIEKIEIDVDQHkk 1695
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 530401713 853 ------LQILKEKFAEASEEAVSVQRSMQETVNKLhqkEEQFNmlSSDLEKLREN 901
Cdd:TIGR01612 1696 nyeigiIEKIKEIAIANKEEIESIKELIEPTIENL---ISSFN--TNDLEGIDPN 1745
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
462-698 |
1.23e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 462 SEDPENTQTKLE--HARIKELEQSLLFEKTKADKLQRELEDTRVATVSEKSRIMELEKDLALRVQEVAELRRRLEsnkpa 539
Cdd:COG4942 19 ADAAAEAEAELEqlQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA----- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 540 gdvdmslSLLQEISSLQEKLEvtrtDHQREITSLKEHFGAREETHQKEIKALYTATEKLSKENESLKSKLEHANKENSDV 619
Cdd:COG4942 94 -------ELRAELEAQKEELA----ELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAEL 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 530401713 620 IALwKSKLETAIASHQQAMEELKVSfSKGLGTETAEFAELKTQIEKMRLDYQHEIENLQNQQDSERAAHAKEMEALRAK 698
Cdd:COG4942 163 AAL-RAELEAERAELEALLAELEEE-RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
703-907 |
1.29e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 1.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 703 IKEKENSLEAIRSKLDKAEDQhlvemedtLNKLQEAEIKV-KELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDALRK 781
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKE--------LAALKKEEKALlKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 782 ASSEGKSEMKK-LRQQLEAAEK--QIKHLEIEKNAESSKASSITREL-----QGRELKLTNLQENLSEVSQVKETLE--- 850
Cdd:COG4942 94 ELRAELEAQKEeLAELLRALYRlgRQPPLALLLSPEDFLDAVRRLQYlkylaPARREQAEELRADLAELAALRAELEaer 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 530401713 851 --------------KELQILKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEA 907
Cdd:COG4942 174 aeleallaeleeerAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
664-870 |
1.39e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 43.31 E-value: 1.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 664 EKMRLDYQHEIENlqnqqDSERAAHAKEMEALRAklmkvIKEKENSLEAirskldKAEDQHLVEM-----------EDTL 732
Cdd:COG2433 319 EKLHLAREYGYDN-----DHERDALAAALKAYDA-----YKNKFERVEK------KVPPDVDRDEvkarvirglsiEEAL 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 733 NKLQEAEIKVKELEVLQAKCNEQTkvidnftsQLKATEEKLLDLDALRKassEGKSEMKKLRQQLEAAEKQIKHLEIEKN 812
Cdd:COG2433 383 EELIEKELPEEEPEAEREKEHEER--------ELTEEEEEIRRLEEQVE---RLEAEVEELEAELEEKDERIERLERELS 451
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 530401713 813 AESSKASS---ITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKE-KFAEASEEAVSV 870
Cdd:COG2433 452 EARSEERReirKDREISRLDREIERLERELEEERERIEELKRKLERLKElWKLEHSGELVPV 513
|
|
| COG4487 |
COG4487 |
Uncharacterized conserved protein, contains DUF2130 domain [Function unknown]; |
1010-1172 |
1.69e-03 |
|
Uncharacterized conserved protein, contains DUF2130 domain [Function unknown];
Pssm-ID: 443580 [Multi-domain] Cd Length: 425 Bit Score: 42.63 E-value: 1.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1010 DLEKKMETSHNQCQELKARYERATSETKTKHEEILQNLQKTLLDTEDKLKGAREENSGllQELEELRKQAdKAKAAQTAE 1089
Cdd:COG4487 37 ERLADAAKREAALELAEAKAKAQLQEQVAEKDAEIAELRARLEAEERKKALAVAEEKE--KELAALQEAL-AEKDAKLAE 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1090 DAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKEN-NLKNVEELNKSKELLTVENQK-MEEFRKEIETLKQAAAQ 1167
Cdd:COG4487 114 LQAKELELLKKERELEDAKREAELTVEKERDEELDELKEKlKKEEEEKQLAEKSLKVAEYEKqLKDMQEQIEELKRKKEQ 193
|
....*
gi 530401713 1168 KSQQL 1172
Cdd:COG4487 194 GSTQL 198
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
730-904 |
1.86e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.45 E-value: 1.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 730 DTLNKLQEAEIKVKELEV----LQAKCNEQTKVIDNFTSQLKATEEKLLDLDALRKassEGKSEMKKLRQQLEAAEKQIK 805
Cdd:COG1579 7 RALLDLQELDSELDRLEHrlkeLPAELAELEDELAALEARLEAAKTELEDLEKEIK---RLELEIEEVEARIKKYEEQLG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 806 hleiekNAESSK-ASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQRSMQETVNKLHQK 884
Cdd:COG1579 84 ------NVRNNKeYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAE 157
|
170 180
....*....|....*....|
gi 530401713 885 EEQfnmLSSDLEKLRENLAD 904
Cdd:COG1579 158 LEE---LEAEREELAAKIPP 174
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1117-1262 |
2.03e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.45 E-value: 2.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1117 AKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRD--EVT 1194
Cdd:COG1579 13 QELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNnkEYE 92
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 530401713 1195 SHQK----LEEERSVLNNQLLEMKKRESKFIKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGE 1262
Cdd:COG1579 93 ALQKeiesLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAE 164
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
654-991 |
2.05e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 42.53 E-value: 2.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 654 AEFAELKTQIEKMRLdyqhEIENLQNQQDSERaahaKEMEALRAKLMKVIKEKENSLEAIRSKLDKA----EDQHLVEME 729
Cdd:pfam06160 107 EELDELLESEEKNRE----EVEELKDKYRELR----KTLLANRFSYGPAIDELEKQLAEIEEEFSQFeeltESGDYLEAR 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 730 DTLNKLQEA----EIKVKELEVLQAKCneQTKVIDNFTsQLKATEEKLLDLD-ALRKASSEgkSEMKKLRQQLEAAEKQI 804
Cdd:pfam06160 179 EVLEKLEEEtdalEELMEDIPPLYEEL--KTELPDQLE-ELKEGYREMEEEGyALEHLNVD--KEIQQLEEQLEENLALL 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 805 KHLEIEKNAESSKA---------SSITRELQGR---ELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQ- 871
Cdd:pfam06160 254 ENLELDEAEEALEEieeridqlyDLLEKEVDAKkyvEKNLPEIEDYLEHAEEQNKELKEELERVQQSYTLNENELERVRg 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 872 ---------RSMQETVNKLHQKEEQFNMLSSDLEKLRENLADME---AKFRE------KDERE--EQLIKAKEKLENDI- 930
Cdd:pfam06160 334 lekqleeleKRYDEIVERLEEKEVAYSELQEELEEILEQLEEIEeeqEEFKEslqslrKDELEarEKLDEFKLELREIKr 413
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 530401713 931 -----------AEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQQ 991
Cdd:pfam06160 414 lveksnlpglpESYLDYFFDVSDEIEDLADELNEVPLNMDEVNRLLDEAQDDVDTLYEKTEELIDNATLAEQ 485
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
351-1178 |
2.22e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.47 E-value: 2.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 351 TALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELAlARDGHDQHVLELEAKMDQLRTMVEaadREKVELLNQ 430
Cdd:pfam01576 260 NNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELE-ALKTELEDTLDTTAAQQELRSKRE---QEVTELKKA 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 431 LEEEKRK---------------VEDLQFRVEEESITKGDLEQKSQISEdpenTQTKLEHARIKELEQSLLFEKTKADKLQ 495
Cdd:pfam01576 336 LEEETRSheaqlqemrqkhtqaLEELTEQLEQAKRNKANLEKAKQALE----SENAELQAELRTLQQAKQDSEHKRKKLE 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 496 RELEDTrvatvseKSRIMELEKDLALRVQEVAELRRRLESnkpagdvdmslsllqeISSLQEKLEVTRTDHQREITSLKE 575
Cdd:pfam01576 412 GQLQEL-------QARLSESERQRAELAEKLSKLQSELES----------------VSSLLNEAEGKNIKLSKDVSSLES 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 576 HFGAREETHQKEIK---ALYTATEKLSKENESLKSKLEHANKEnsdvialwKSKLETAIASHQQAMEELKvsfskglgTE 652
Cdd:pfam01576 469 QLQDTQELLQEETRqklNLSTRLRQLEDERNSLQEQLEEEEEA--------KRNVERQLSTLQAQLSDMK--------KK 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 653 TAEFAELKTQIEKMRLDYQHEIENLqNQQDSERAAHAKEMEALRAKLMKVIKEKENSLEAIRS------KLDKAEDQHLV 726
Cdd:pfam01576 533 LEEDAGTLEALEEGKKRLQRELEAL-TQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQlvsnleKKQKKFDQMLA 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 727 EMEDTLNKLQ------EAEIKVKELEVLqakcneqtkvidnftSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEAA 800
Cdd:pfam01576 612 EEKAISARYAeerdraEAEAREKETRAL---------------SLARALEEALEAKEELERTNKQLRAEMEDLVSSKDDV 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 801 EKQIKHLEIEKNAESSKASSITRELQgrelkltNLQENLSEVSQVKETLEKELQILKEKF--------AEASEEAVSVQR 872
Cdd:pfam01576 677 GKNVHELERSKRALEQQVEEMKTQLE-------ELEDELQATEDAKLRLEVNMQALKAQFerdlqardEQGEEKRRQLVK 749
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 873 SMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIM------KMSGDNSSQLTK 946
Cdd:pfam01576 750 QVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQIDAANKGREEAVKQLKKLQAQMKDLQreleeaRASRDEILAQSK 829
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 947 MNdELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAE-QSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQEL 1025
Cdd:pfam01576 830 ES-EKKLKNLEAELLQLQEDLAASERARRQAQQERDELADEiASGASGKSALQDEKRRLEARIAQLEEELEEEQSNTELL 908
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1026 KARYERATSETktkheEILQNLQKTLLDTEDKLKGARE-------ENSGLLQELEELRKQADKAKAAQTAEDAMQIMEQM 1098
Cdd:pfam01576 909 NDRLRKSTLQV-----EQLTTELAAERSTSQKSESARQqlerqnkELKAKLQEMEGTVKSKFKSSIAALEAKIAQLEEQL 983
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1099 TKEKTETLASLEDTKQTNAKLQnELDTLKENNLKNVEELnksKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEE 1178
Cdd:pfam01576 984 EQESRERQAANKLVRRTEKKLK-EVLLQVEDERRHADQY---KDQAEKGNSRMKQLKRQLEEAEEEASRANAARRKLQRE 1059
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
666-1162 |
2.26e-03 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 42.52 E-value: 2.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 666 MRLDYQHEIENLQNQQDSERAAHAKEmEALRAKLMKVIKEKENSLEAIRSKLDKAEDQHLVEMEdtlNKLQEAEIKVKEL 745
Cdd:PRK04778 23 LRKRNYKRIDELEERKQELENLPVND-ELEKVKKLNLTGQSEEKFEEWRQKWDEIVTNSLPDIE---EQLFEAEELNDKF 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 746 EVLQAKcneqtKVIDNFTSQLKATEEkllDLDALRKassegksEMKKLRQQLEAAEKQIKHLeieknaesskassitREL 825
Cdd:PRK04778 99 RFRKAK-----HEINEIESLLDLIEE---DIEQILE-------ELQELLESEEKNREEVEQL---------------KDL 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 826 QgRELKLTNLQENLSeVSQVKETLEKELQILKEKFAEASE--------EAVSVQRSMQETVNKLHQKEEQFNMLSSDLEK 897
Cdd:PRK04778 149 Y-RELRKSLLANRFS-FGPALDELEKQLENLEEEFSQFVEltesgdyvEAREILDQLEEELAALEQIMEEIPELLKELQT 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 898 -LRENLADMEAKFREkdereeqLIKAKEKLENDIAEimkmsgdnsSQLTKMNDELRLKERDVEELqlKLTKANENASFLQ 976
Cdd:PRK04778 227 eLPDQLQELKAGYRE-------LVEEGYHLDHLDIE---------KEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQ 288
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 977 KSIEDM------TVKAEQsqqeaakkheeekkelerklsDLEKKMETshnqcqeLKARYERATSETKTKHEEILQnLQKT 1050
Cdd:PRK04778 289 ERIDQLydilerEVKARK---------------------YVEKNSDT-------LPDFLEHAKEQNKELKEEIDR-VKQS 339
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1051 LLDTEDKLKGAREensgLLQELEELRKQADKAKAAQTAEDAM--QIMEQMTkektETLASLEDTKQTNAKLQNELDTLKE 1128
Cdd:PRK04778 340 YTLNESELESVRQ----LEKQLESLEKQYDEITERIAEQEIAysELQEELE----EILKQLEEIEKEQEKLSEMLQGLRK 411
|
490 500 510
....*....|....*....|....*....|....
gi 530401713 1129 nnlknvEELnkskelltVENQKMEEFRKEIETLK 1162
Cdd:PRK04778 412 ------DEL--------EAREKLERYRNKLHEIK 431
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
720-989 |
2.28e-03 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 42.37 E-value: 2.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 720 AEDQHLvemEDTLNKLQEAEIKVKELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLdALRKASSEgkSEMKK---LRQQ 796
Cdd:pfam05622 111 EEAQAL---KDEMDILRESSDKVKKLEATVETYKKKLEDLGDLRRQVKLLEERNAEY-MQRTLQLE--EELKKanaLRGQ 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 797 LEAAEKQIKHLEIEKNAESSKASSITRELQgrelkltNLQENLSEVSQVKETLEKELQILKE-----KFAEASEEAVSVQ 871
Cdd:pfam05622 185 LETYKRQVQELHGKLSEESKKADKLEFEYK-------KLEEKLEALQKEKERLIIERDTLREtneelRCAQLQQAELSQA 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 872 RSMQ-----------------ETVNKLHQKEEQFNMLS-----SDLEKLRENLADMEAKFREKDEREEQLIKAKEKLEND 929
Cdd:pfam05622 258 DALLspssdpgdnlaaeimpaEIREKLIRLQHENKMLRlgqegSYRERLTELQQLLEDANRRKNELETQNRLANQRILEL 337
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 930 IAEIMKMSGDNSSQLTKMNDELRLKeRDVEELQLKLTKANENASFLQKSIEDMTVKAEQS 989
Cdd:pfam05622 338 QQQVEELQKALQEQGSKAEDSSLLK-QKLEEHLEKLHEAQSELQKKKEQIEELEPKQDSN 396
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
795-1302 |
2.32e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.58 E-value: 2.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 795 QQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVsvqrSM 874
Cdd:PRK01156 162 NSLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYN----NL 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 875 QETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKE--------------KLENDIAEIMKMSGDN 940
Cdd:PRK01156 238 KSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINdpvyknrnyindyfKYKNDIENKKQILSNI 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 941 SSQLTKMNDELRlKERDVEELQLKLTKANENASFLQKSIEDMtvkaeQSQQEAAKKHEEEKKELERKLSDLEKKMETSHN 1020
Cdd:PRK01156 318 DAEINKYHAIIK-KLSVLQKDYNDYIKKKSRYDDLNNQILEL-----EGYEMDYNSYLKSIESLKKKIEEYSKNIERMSA 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1021 QCQELKARYERATSETKTKHEEILQNLQktllDTEDKLKGAREENSGLLQELEELRKQADKAKAAQTA---------EDA 1091
Cdd:PRK01156 392 FISEILKIQEIDPDAIKKELNEINVKLQ----DISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCpvcgttlgeEKS 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1092 MQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKEN----NLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQ 1167
Cdd:PRK01156 468 NHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRkeylESEEINKSINEYNKIESARADLEDIKIKINELKDKHDK 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1168 --------KSQQLSALQEENVKLAEELGR--SRDEVTSHQKLEEERSVLNNQLLEMKKRESKF----------IKDADEE 1227
Cdd:PRK01156 548 yeeiknryKSLKLEDLDSKRTSWLNALAVisLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFpddksyidksIREIENE 627
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 530401713 1228 KASLQKSISitsaLLTEKDAELEKLRNEVTVLRGENASAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLS 1302
Cdd:PRK01156 628 ANNLNNKYN----EIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRA 698
|
|
| PRK05431 |
PRK05431 |
seryl-tRNA synthetase; Provisional |
710-807 |
2.75e-03 |
|
seryl-tRNA synthetase; Provisional
Pssm-ID: 235461 [Multi-domain] Cd Length: 425 Bit Score: 41.98 E-value: 2.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 710 LEAIRSKLDK-AEDQHLVEMEDTLNKLQEAEIKVKEL----EVLQAKCNEQTKVIdnftSQLKATEEkllDLDALRKASS 784
Cdd:PRK05431 4 IKLIRENPEAvKEALAKRGFPLDVDELLELDEERRELqtelEELQAERNALSKEI----GQAKRKGE---DAEALIAEVK 76
|
90 100
....*....|....*....|...
gi 530401713 785 EGKSEMKKLRQQLEAAEKQIKHL 807
Cdd:PRK05431 77 ELKEEIKALEAELDELEAELEEL 99
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
727-967 |
2.87e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.22 E-value: 2.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 727 EMEDTLNKLQEAEIkvkeLEVLQAKCNEQTKVIDNFTSQLKATEEKLldlDALRKASSEGKSEMK-KLRQQLEAAEKQIK 805
Cdd:PRK05771 17 YKDEVLEALHELGV----VHIEDLKEELSNERLRKLRSLLTKLSEAL---DKLRSYLPKLNPLREeKKKVSVKSLEELIK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 806 HLEIEknaesskASSITRELQGRELKLTNLQENLSEVSQVKETLEK------ELQILKEK------FAEASEEAVSVQRS 873
Cdd:PRK05771 90 DVEEE-------LEKIEKEIKELEEEISELENEIKELEQEIERLEPwgnfdlDLSLLLGFkyvsvfVGTVPEDKLEELKL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 874 MQETVNKLHQKEEQ------FNMLSSDLEKLRENLADMEAK-------------FREKDEREEQLIKAKEKLENDIAEIM 934
Cdd:PRK05771 163 ESDVENVEYISTDKgyvyvvVVVLKELSDEVEEELKKLGFErleleeegtpselIREIKEELEEIEKERESLLEELKELA 242
|
250 260 270
....*....|....*....|....*....|...
gi 530401713 935 KMSGDNSSQLtkmnDELRLKERDVEELQLKLTK 967
Cdd:PRK05771 243 KKYLEELLAL----YEYLEIELERAEALSKFLK 271
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
387-811 |
3.28e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.96 E-value: 3.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 387 EIEQELALARDGHDQHVLELEAK-MDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEQKSQISEDP 465
Cdd:TIGR00606 722 EKRRDEMLGLAPGRQSIIDLKEKeIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMEL 801
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 466 ENTQTKLEHaRIKELEQSLLFEKTKADKLQRELEDTRVATVSEKsrIMELEKDLALRVQEVAELRRRLESnkpAGDVDMS 545
Cdd:TIGR00606 802 KDVERKIAQ-QAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSK--IELNRKLIQDQQEQIQHLKSKTNE---LKSEKLQ 875
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 546 LSL-LQEISSLQEKLEVTRTDHQREITSLKEhfgareetHQKEIKALYTATEKLSKENESLKSKLEHANKENSDVIALWK 624
Cdd:TIGR00606 876 IGTnLQRRQQFEEQLVELSTEVQSLIREIKD--------AKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIK 947
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 625 SKLETAIASHQQAMEELKVSFSKGLGTETAEFAELKTQIEKMRLDYQHEIENLQNQQDSERAAHAKEMEALRAKLMKVIK 704
Cdd:TIGR00606 948 EKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRE 1027
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 705 EKENSLEAIRSKLDKAEDQ-HLVEMEDTLNKLQEAEIKVKELEVL---QAKCNEQTKVI---DNFTSQLKATEEKLLDLD 777
Cdd:TIGR00606 1028 NELKEVEEELKQHLKEMGQmQVLQMKQEHQKLEENIDLIKRNHVLalgRQKGYEKEIKHfkkELREPQFRDAEEKYREMM 1107
|
410 420 430
....*....|....*....|....*....|....
gi 530401713 778 ALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEK 811
Cdd:TIGR00606 1108 IVMRTTELVNKDLDIYYKTLDQAIMKFHSMKMEE 1141
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
411-591 |
3.31e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.93 E-value: 3.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 411 DQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEeesitkgDLEQKSQISEDPEntQTKLEHARIKELEQSLL----- 485
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEAEAALE-------EFRQKNGLVDLSE--EAKLLLQQLSELESQLAearae 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 486 --FEKTKADKLQRELEDTR--VATVSEKSRIMELEKDLALRVQEVAELRRRLESNKPagDVdmsLSLLQEISSLQEKLEV 561
Cdd:COG3206 235 laEAEARLAALRAQLGSGPdaLPELLQSPVIQQLRAQLAELEAELAELSARYTPNHP--DV---IALRAQIAALRAQLQQ 309
|
170 180 190
....*....|....*....|....*....|
gi 530401713 562 TRTDHQREITSLKEHFGAREETHQKEIKAL 591
Cdd:COG3206 310 EAQRILASLEAELEALQAREASLQAQLAQL 339
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
675-982 |
3.37e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 42.20 E-value: 3.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 675 ENLQNQQDSERAAHAKEMEALRAKLMKVIKEKEN-SLEAIRSKLDKAEDQHLVEMEDTLNKLQEAEIKVKELEVLQAKCN 753
Cdd:PLN02939 94 DDDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDfQLEDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKIN 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 754 eqtkvidnftsqlkATEEKLLDLDALRKASSEGKSEMKKLRQQLeaaEKQIKHLEIEKNAESSKASSITRELQgrELKLT 833
Cdd:PLN02939 174 --------------ILEMRLSETDARIKLAAQEKIHVEILEEQL---EKLRNELLIRGATEGLCVHSLSKELD--VLKEE 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 834 N---------LQENLSEVSQVKE---TLEKELQILKEKFAEASEEAVSVQRSMQET----VNKLHQKEEQFNMLSSDLEK 897
Cdd:PLN02939 235 NmllkddiqfLKAELIEVAETEErvfKLEKERSLLDASLRELESKFIVAQEDVSKLsplqYDCWWEKVENLQDLLDRATN 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 898 LRENLA---DMEAKFREK-DEREEQLIKAK-EKLENDIAEIM--KMSG-----DNSSQltKMNDELRLKERDVEELQLKL 965
Cdd:PLN02939 315 QVEKAAlvlDQNQDLRDKvDKLEASLKEANvSKFSSYKVELLqqKLKLleerlQASDH--EIHSYIQLYQESIKEFQDTL 392
|
330
....*....|....*....
gi 530401713 966 TKANENAS--FLQKSIEDM 982
Cdd:PLN02939 393 SKLKEESKkrSLEHPADDM 411
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
709-991 |
3.56e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.82 E-value: 3.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 709 SLEAIRSKLDKAEDQhlvemedtlnKLQEAEIKVkelevlqakcneqtkvidnftsqLKATEEKLLDLDALRKASsegKS 788
Cdd:PRK11281 37 TEADVQAQLDALNKQ----------KLLEAEDKL-----------------------VQQDLEQTLALLDKIDRQ---KE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 789 EMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRElQGRELKLTNLQENLSEVSQvketlekELQILKEKFAEASEEAV 868
Cdd:PRK11281 81 ETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRE-TLSTLSLRQLESRLAQTLD-------QLQNAQNDLAEYNSQLV 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 869 SVQ----RSMQETVNKLHQKEEQFNMLSSDleklRENLADMEAKFREKDEREEQLIKAKEKLEndiaeimKMSGDNSSQL 944
Cdd:PRK11281 153 SLQtqpeRAQAALYANSQRLQQIRNLLKGG----KVGGKALRPSQRVLLQAEQALLNAQNDLQ-------RKSLEGNTQL 221
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 530401713 945 TkmndELRLKERDveELQLKLTKANENASFLQKSIED-------MTVKAEQSQQ 991
Cdd:PRK11281 222 Q----DLLQKQRD--YLTARIQRLEHQLQLLQEAINSkrltlseKTVQEAQSQD 269
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
875-1086 |
3.63e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.93 E-value: 3.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 875 QETVNKL------HQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLikakeKLENDIAEIMKMSGDNSSQLTKMN 948
Cdd:COG3206 151 AAVANALaeayleQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEF-----RQKNGLVDLSEEAKLLLQQLSELE 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 949 DELRlkerdveELQLKLTKANENASFLQKSIE-DMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKA 1027
Cdd:COG3206 226 SQLA-------EARAELAEAEARLAALRAQLGsGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRA 298
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 530401713 1028 RYERATsetktkhEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQADKAKAAQ 1086
Cdd:COG3206 299 QIAALR-------AQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELE 350
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
494-740 |
3.69e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.93 E-value: 3.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 494 LQRELEDTRVATVSEKSRIMELEKDLALRVQEVAELRRRLESNKPAGDVDMslsLLQEISSLQEKLEVTRTDHQreitsl 573
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKL---LLQQLSELESQLAEARAELA------ 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 574 kehfgareethqkEIKALYTATEKLSKENESLKSKLEhankeNSDVIAlwksKLETAIASHQQAMEELkvsfSKGLGTET 653
Cdd:COG3206 237 -------------EAEARLAALRAQLGSGPDALPELL-----QSPVIQ----QLRAQLAELEAELAEL----SARYTPNH 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 654 AEFAELKTQIEKMRLDYQHEIENLQNQQDSERAAHAKEMEALRAKL------MKVIKEKENSLEAIRSKLDKAEDQHlve 727
Cdd:COG3206 291 PDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLaqlearLAELPELEAELRRLEREVEVARELY--- 367
|
250
....*....|...
gi 530401713 728 mEDTLNKLQEAEI 740
Cdd:COG3206 368 -ESLLQRLEEARL 379
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
795-956 |
4.04e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.61 E-value: 4.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 795 QQLEAAEKQIKHLEIEKNAesskassITREL-QGRELKLTNLQENLSEvsqvketLEKELQILKEKFAEASEEAVSVQRS 873
Cdd:COG0542 411 EELDELERRLEQLEIEKEA-------LKKEQdEASFERLAELRDELAE-------LEEELEALKARWEAEKELIEEIQEL 476
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 874 MQEtvnkLHQKEEQFNMLSSDLEKLRENLADMEAKFREK-DereeqlikakeklENDIAEIM---------KMSGDNSSQ 943
Cdd:COG0542 477 KEE----LEQRYGKIPELEKELAELEEELAELAPLLREEvT-------------EEDIAEVVsrwtgipvgKLLEGEREK 539
|
170
....*....|...
gi 530401713 944 LTKMNDElrLKER 956
Cdd:COG0542 540 LLNLEEE--LHER 550
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
767-980 |
4.50e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.04 E-value: 4.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 767 KATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQVK 846
Cdd:COG4372 31 EQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEA 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 847 ETLEKELQILKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREeqLIKAKEKL 926
Cdd:COG4372 111 EELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAE--AEQALDEL 188
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 530401713 927 ENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIE 980
Cdd:COG4372 189 LKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDAL 242
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1069-1276 |
4.88e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 4.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1069 LQELEELRKQADKAKAAQTAedamqiMEQMTKEKTETLASLEDTKQTNAKLQNELDTLK--ENNLKNVEELNKSKELLTV 1146
Cdd:COG4717 70 LKELKELEEELKEAEEKEEE------YAELQEELEELEEELEELEAELEELREELEKLEklLQLLPLYQELEALEAELAE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1147 ENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELgrsrdEVTSHQKLEEersvlnnqllemkkreskfIKDADE 1226
Cdd:COG4717 144 LPERLEELEERLEELRELEEELEELEAELAELQEELEELL-----EQLSLATEEE-------------------LQDLAE 199
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 530401713 1227 EKASLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKSLHSVVQTL 1276
Cdd:COG4717 200 ELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEAR 249
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
456-1270 |
5.16e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 41.58 E-value: 5.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 456 EQKSQ-ISEDPENTQTKLEHARIKELEQSllfeKTKADKLQRELEDTRVATVSEKSRIMELEKDLALRVQEVAELRRRLE 534
Cdd:TIGR01612 1463 DNKSQhILKIKKDNATNDHDFNINELKEH----IDKSKGCKDEADKNAKAIEKNKELFEQYKKDVTELLNKYSALAIKNK 1538
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 535 SNKPAGDvdmSLSLLQEISSLQEKLEVTRTDHQREITSLK------EHFGAREETHQKEIKALYTATEKLskENESLKsk 608
Cdd:TIGR01612 1539 FAKTKKD---SEIIIKEIKDAHKKFILEAEKSEQKIKEIKkekfriEDDAAKNDKSNKAAIDIQLSLENF--ENKFLK-- 1611
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 609 LEHANKENSDVIALWKSkLETAIASHQQAMEELKVSFSKGLGTETAEFAE-LKTQIEKMRlDYQHEIENLQNQQDS---E 684
Cdd:TIGR01612 1612 ISDIKKKINDCLKETES-IEKKISSFSIDSQDTELKENGDNLNSLQEFLEsLKDQKKNIE-DKKKELDELDSEIEKieiD 1689
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 685 RAAHAKEME-ALRAKLMKVIKEKENSLEAIRS-------KLDKAEDQHLVEMEDTLNKLQEAEIKVKELEvlqakcNEQT 756
Cdd:TIGR01612 1690 VDQHKKNYEiGIIEKIKEIAIANKEEIESIKElieptieNLISSFNTNDLEGIDPNEKLEEYNTEIGDIY------EEFI 1763
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 757 KVIDNFTSQLKATEEKLLDLDALRKASSEGKSEMkklrqqleaaekqIKHLEIEKnaessKASSITRELQGRELK--LTN 834
Cdd:TIGR01612 1764 ELYNIIAGCLETVSKEPITYDEIKNTRINAQNEF-------------LKIIEIEK-----KSKSYLDDIEAKEFDriINH 1825
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 835 LQENLSEVSqvkETLEKELQILKEKFAEASEEAVSVQRSMQEtvnklhqkeeqfNMLSSDLEKLRENLADMEAK--FREK 912
Cdd:TIGR01612 1826 FKKKLDHVN---DKFTKEYSKINEGFDDISKSIENVKNSTDE------------NLLFDILNKTKDAYAGIIGKkyYSYK 1890
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 913 DErEEQLIKAKEKLENDI-AEIMKMSGDNssQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEDmtvkaeqsqq 991
Cdd:TIGR01612 1891 DE-AEKIFINISKLANSInIQIQNNSGID--LFDNINIAILSSLDSEKEDTLKFIPSPEKEPEIYTKIRD---------- 1957
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 992 eaakkHEEEKKELERKLSDLEKKMETSHNQCQELKARYER---------ATSETKTKHEEILQNLqKTLLDTEDKLK--G 1060
Cdd:TIGR01612 1958 -----SYDTLLDIFKKSQDLHKKEQDTLNIIFENQQLYEKiqasnelkdTLSDLKYKKEKILNDV-KLLLHKFDELNklS 2031
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1061 AREENSGLLQELEELRKQADKAKAAQTAEDAM------QIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNV 1134
Cdd:TIGR01612 2032 CDSQNYDTILELSKQDKIKEKIDNYEKEKEKFgidfdvKAMEEKFDNDIKDIEKFENNYKHSEKDNHDFSEEKDNIIQSK 2111
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1135 EELNKSKELLTVENQKME--------------EFRKE---------IETLKQAAAQKSQQLSALqeenVKLAEELGRSRD 1191
Cdd:TIGR01612 2112 KKLKELTEAFNTEIKIIEdkiiekndlidkliEMRKEcllfsyatlVETLKSKVINHSEFITSA----AKFSKDFFEFIE 2187
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1192 EVTSHQKLEEERSVLNNQLLEMKKRESKFIKDADEEKASlqksisitsalLTEKDAELEKLRNEVTVL---RGENASAKS 1268
Cdd:TIGR01612 2188 DISDSLNDDIDALQIKYNLNQTKKHMISILADATKDHNN-----------LIEKEKEATKIINNLTELftiDFNNADADI 2256
|
..
gi 530401713 1269 LH 1270
Cdd:TIGR01612 2257 LH 2258
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1034-1342 |
5.18e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.16 E-value: 5.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1034 SETKTKhEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQADKAKaaqtaedamQIMEQMTKEKTETLASLEDTK 1113
Cdd:TIGR04523 47 NELKNK-EKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNK---------DKINKLNSDLSKINSEIKNDK 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1114 QTNAKLQNELDTLK-------ENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEEL 1186
Cdd:TIGR04523 117 EQKNKLEVELNKLEkqkkenkKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKL 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1187 GRSRDEVTSHQKLEEERSVLNNQLLEMKKRESKFIKDADEEKASLQKSISITSA-------LLTEKDAELEKLRNEVTVL 1259
Cdd:TIGR04523 197 LKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNtqtqlnqLKDEQNKIKKQLSEKQKEL 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1260 RGENASAKSLHSVVQTLESD-----KVKLELKVKNLELQLKENKRQLSsssgNTDTQADederaqESQQMIDFLNSVIVD 1334
Cdd:TIGR04523 277 EQNNKKIKELEKQLNQLKSEisdlnNQKEQDWNKELKSELKNQEKKLE----EIQNQIS------QNNKIISQLNEQISQ 346
|
....*...
gi 530401713 1335 LQRKNQDL 1342
Cdd:TIGR04523 347 LKKELTNS 354
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
726-930 |
5.25e-03 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 41.17 E-value: 5.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 726 VEMEDTLNKLQEAEIKV--KELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQ 803
Cdd:pfam05667 323 VETEEELQQQREEELEElqEQLEDLESSIQELEKEIKKLESSIKQVEEELEELKEQNEELEKQYKVKKKTLDLLPDAEEN 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 804 IKHLEIEKNAESSKassitrelqgrelkltnLQENLSEVSQVKETLEKELQILKEKFAEASEEAvsvQRSMQEtvnklhq 883
Cdd:pfam05667 403 IAKLQALVDASAQR-----------------LVELAGQWEKHRVPLIEEYRALKEAKSNKEDES---QRKLEE------- 455
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 530401713 884 keeqfnmlssdLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDI 930
Cdd:pfam05667 456 -----------IKELREKIKEVAEEAKQKEELYKQLVAEYERLPKDV 491
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
598-852 |
5.40e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.15 E-value: 5.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 598 LSKENESLKSKLEHANkENSDVIALWKSKLETAIASHQQAMEELKvsfsKGLGTETAEFAELKTQIEKMRLDYQHEIENL 677
Cdd:PHA02562 165 LSEMDKLNKDKIRELN-QQIQTLDMKIDHIQQQIKTYNKNIEEQR----KKNGENIARKQNKYDELVEEAKTIKAEIEEL 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 678 QNQQdseraahakemealrAKLMKVIKEKENSLEAIRSKLDKAEDQHlvemeDTLNKL--------------QEAEIKVK 743
Cdd:PHA02562 240 TDEL---------------LNLVMDIEDPSAALNKLNTAAAKIKSKI-----EQFQKVikmyekggvcptctQQISEGPD 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 744 ELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEieknAESSKASSitr 823
Cdd:PHA02562 300 RITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVK----AAIEELQA--- 372
|
250 260
....*....|....*....|....*....
gi 530401713 824 ELQGRELKLTNLQENLSEVSQVKETLEKE 852
Cdd:PHA02562 373 EFVDNAEELAKLQDELDKIVKTKSELVKE 401
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
332-534 |
6.02e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.21 E-value: 6.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 332 RTGLLTETSSRYARKISGTTALQEA---LKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALAR---DGHDQHVLE 405
Cdd:TIGR02169 690 LSSLQSELRRIENRLDELSQELSDAsrkIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKselKELEARIEE 769
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 406 LEAKMDQLRTMVEA-ADREKVELLNQLEEEKRKVEDLQFRVEE-----ESITKGDLEQKSQISEDPENTQTKLEH--ARI 477
Cdd:TIGR02169 770 LEEDLHKLEEALNDlEARLSHSRIPEIQAELSKLEEEVSRIEArlreiEQKLNRLTLEKEYLEKEIQELQEQRIDlkEQI 849
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 530401713 478 KELEQSLLFEKTKADKLQRELEDTRVATVSEKSRIMELEKDLALRVQEVAELRRRLE 534
Cdd:TIGR02169 850 KSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIE 906
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
428-1014 |
6.08e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.16 E-value: 6.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 428 LNQLEEEKRKVEDLQFRVEEESITKGDLEQKSQISEDPENTQtkleharIKELEQSLLFEKTKADKLQRELEDTRVATVS 507
Cdd:TIGR04523 126 LNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQ-------KEELENELNLLEKEKLNIQKNIDKIKNKLLK 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 508 EKSRIMELE------KDLALRVQEVAELRRRLESNKPAGDVDMSlSLLQEISSLQEKLEVTRTDHQREITSLKEHfgare 581
Cdd:TIGR04523 199 LELLLSNLKkkiqknKSLESQISELKKQNNQLKDNIEKKQQEIN-EKTTEISNTQTQLNQLKDEQNKIKKQLSEK----- 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 582 ethQKEIKALYTATEKLSKENESLKSKLEHANKENSDVialWKSKLETAIASHQQAMEELKVSFSKglgtETAEFAELKT 661
Cdd:TIGR04523 273 ---QKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQD---WNKELKSELKNQEKKLEEIQNQISQ----NNKIISQLNE 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 662 QIEKMRLDYQH-EIENLQ-NQQDSERAAHAKEMEALRAKLMKVIKEKENSLEAIRSKLDKAEDQHLVEMEDTLNKLQEAE 739
Cdd:TIGR04523 343 QISQLKKELTNsESENSEkQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKE 422
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 740 IKVKELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDALRKASSEG-----------KSEMKKLRQQLEAAEKQIKHLE 808
Cdd:TIGR04523 423 LLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQlkvlsrsinkiKQNLEQKQKELKSKEKELKKLN 502
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 809 IE--------KNAESSKASSITR------ELQGRELKLTNLQENLSEVSQV--KETLEKELQILKEKFAEASEEAVSVQR 872
Cdd:TIGR04523 503 EEkkeleekvKDLTKKISSLKEKieklesEKKEKESKISDLEDELNKDDFElkKENLEKEIDEKNKEIEELKQTQKSLKK 582
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 873 SMQETVNKLHQKEEQFNMLSSDLEK-------LRENLADMEAKFREKDEREEQLIKAKEKLEND---IAEIMKMSGDNSS 942
Cdd:TIGR04523 583 KQEEKQELIDQKEKEKKDLIKEIEEkekkissLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEvkqIKETIKEIRNKWP 662
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 943 QLTKMNDELRLKERDVEELQLKLTKanENASFLQKSIEDMTVKAEQSQ--------QEAAKKHEEEKKELERKLSDLEKK 1014
Cdd:TIGR04523 663 EIIKKIKESKTKIDDIIELMKDWLK--ELSLHYKKYITRMIRIKDLPKleekykeiEKELKKLDEFSKELENIIKNFNKK 740
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
892-1166 |
6.66e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 6.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 892 SSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANEN 971
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 972 ASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLEkkmetshnqcqelkaryeratsetktkheeILQNLQKTL 1051
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQ------------------------------YLKYLAPAR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1052 LDTEDKLKGAREENSGLLQELEELRKQADKAKAAQTAEdamqimeqmtkektetLASLEDTKQTNAKLQNELDTLKENNL 1131
Cdd:COG4942 149 REQAEELRADLAELAALRAELEAERAELEALLAELEEE----------------RAALEALKAERQKLLARLEKELAELA 212
|
250 260 270
....*....|....*....|....*....|....*
gi 530401713 1132 KNVEELNKSKELLTVENQKMEEFRKEIETLKQAAA 1166
Cdd:COG4942 213 AELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| PTZ00440 |
PTZ00440 |
reticulocyte binding protein 2-like protein; Provisional |
824-1288 |
6.88e-03 |
|
reticulocyte binding protein 2-like protein; Provisional
Pssm-ID: 240419 [Multi-domain] Cd Length: 2722 Bit Score: 41.36 E-value: 6.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 824 ELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFaeaseeavsvqrsmqetvNKLHQKEEQFNMLSSDLEKLRENLA 903
Cdd:PTZ00440 485 SKEKKESSDSNYQEKVDELLQIINSIKEKNNIVNNNF------------------KNIEDYYITIEGLKNEIEGLIELIK 546
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 904 DMEAKFREKDEREeqliKAKEKLENDIAEIMKMSGDNSSQLTKM---NDELRLKERDVEELqLKLTKANENASFLQKSIE 980
Cdd:PTZ00440 547 YYLQSIETLIKDE----KLKRSMKNDIKNKIKYIEENVDHIKDIislNDEIDNIIQQIEEL-INEALFNKEKFINEKNDL 621
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 981 DMTVKaeqsqqeaakkheeeKKELERKLSDLEKKMETSHNQCQELKARYERATSETKtkheeiLQNLQKTLLDTEDKLKG 1060
Cdd:PTZ00440 622 QEKVK---------------YILNKFYKGDLQELLDELSHFLDDHKYLYHEAKSKED------LQTLLNTSKNEYEKLEF 680
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1061 AREEN--------SGLLQELEELRKQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLK 1132
Cdd:PTZ00440 681 MKSDNidniiknlKKELQNLLSLKENIIKKQLNNIEQDISNSLNQYTIKYNDLKSSIEEYKEEEEKLEVYKHQIINRKNE 760
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1133 NVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVTSHQKLEEERSVLNNQLLE 1212
Cdd:PTZ00440 761 FILHLYENDKDLPDGKNTYEEFLQYKDTILNKENKISNDINILKENKKNNQDLLNSYNILIQKLEAHTEKNDEELKQLLQ 840
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 530401713 1213 MKKRESKFIKDADEEKaSLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKSLHSVVQTLESdkvKLELKVK 1288
Cdd:PTZ00440 841 KFPTEDENLNLKELEK-EFNENNQIVDNIIKDIENMNKNINIIKTLNIAINRSNSNKQLVEHLLNN---KIDLKNK 912
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
357-535 |
6.98e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.88 E-value: 6.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 357 LKEKQQHIEQLLAE---------RDLERAEVAKATSHvGEIEQELALAR------DGHDQHVLELEAKMDQLRTMVEAAD 421
Cdd:pfam17380 355 QEERKRELERIRQEeiameisrmRELERLQMERQQKN-ERVRQELEAARkvkileEERQRKIQQQKVEMEQIRAEQEEAR 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 422 REKVELLNqlEEEKRKVEdlqfRVEEESITKgdlEQKSQISEDPENTQTKLEHARIKELEQSLLFEKTKADKLQRELEDT 501
Cdd:pfam17380 434 QREVRRLE--EERAREME----RVRLEEQER---QQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEER 504
|
170 180 190
....*....|....*....|....*....|....
gi 530401713 502 RVATVSEKSRIMELEKDLALRVQEVAELRRRLES 535
Cdd:pfam17380 505 KQAMIEEERKRKLLEKEMEERQKAIYEEERRREA 538
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
791-1324 |
7.97e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 40.73 E-value: 7.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 791 KKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSV 870
Cdd:pfam02463 198 QELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 871 QRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKmsgdnssQLTKMNDE 950
Cdd:pfam02463 278 EKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEK-------ELKELEIK 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 951 LRLKERDVEELQLKLTKANENASFLQKSIEDMTvkAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKARYE 1030
Cdd:pfam02463 351 REAEEEEEEELEKLQEKLEQLEEELLAKKKLES--ERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEE 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1031 RATSETKTKHEEILQNLQKTLLDTEDKLKGAREENsgllqeLEELRKQADKAKAAQTAEDAMQIMEQMTKEKTETLASLE 1110
Cdd:pfam02463 429 LEILEEEEESIELKQGKLTEEKEELEKQELKLLKD------ELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKE 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1111 DTKQTNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENvKLAEELGRSR 1190
Cdd:pfam02463 503 SKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALT-ELPLGARKLR 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1191 DEVTSHQKLEEERSVLNNQLLEMKKRESKFIKDADEEKAsLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKSLH 1270
Cdd:pfam02463 582 LLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDK-RAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAE 660
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 530401713 1271 SVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDTQADEDERAQESQQM 1324
Cdd:pfam02463 661 KSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKK 714
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
758-928 |
8.35e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.58 E-value: 8.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 758 VIDNFTSQLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQIKH-LEIE-----KNAESSkASSITRELQGRElK 831
Cdd:PRK00409 521 LIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEeAEKEaqqaiKEAKKE-ADEIIKELRQLQ-K 598
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 832 LTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQ-------RSMQETVNKLHQKEEQFNMLSSDLEKLRENLAD 904
Cdd:PRK00409 599 GGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELKvgdevkyLSLGQKGEVLSIPDDKEAIVQAGIMKMKVPLSD 678
|
170 180
....*....|....*....|....
gi 530401713 905 MEAKFREKDEREEQLIKAKEKLEN 928
Cdd:PRK00409 679 LEKIQKPKKKKKKKPKTVKPKPRT 702
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
835-990 |
9.30e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 40.27 E-value: 9.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 835 LQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDE 914
Cdd:COG4372 29 LSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQE 108
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 530401713 915 REEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANENASFLQKSIEDMTVKAEQSQ 990
Cdd:COG4372 109 EAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQA 184
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1041-1212 |
9.57e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.52 E-value: 9.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1041 EEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQADKAkaaqtaEDAMQIMEQMTKEKTETLASLEDTKQTNAkLQ 1120
Cdd:COG1579 23 EHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRL------ELEIEEVEARIKKYEEQLGNVRNNKEYEA-LQ 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401713 1121 NELDTLKennlKNVEELNksKELLTVENQKmEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVTshQKLE 1200
Cdd:COG1579 96 KEIESLK----RRISDLE--DEILELMERI-EELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELE--AERE 166
|
170
....*....|..
gi 530401713 1201 EERSVLNNQLLE 1212
Cdd:COG1579 167 ELAAKIPPELLA 178
|
|
| |
