|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1-681 |
3.52e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 76.63 E-value: 3.52e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 1 MQDLEETMAKLQLELNLCQKEKERLSDELLVK----SDLETVVHQLEQEKQRLSKKVesFAVTERQLTLEVERMRLEHGI 76
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELeeklEELRLEVSELEEEIEELQKEL--YALANEISRLEQQKQILRERL 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 77 KRRDRSPSRLDTFLKGIEEERDYYKKELERLQHIIQR-RSCSTSYSAREKS---------SIFRTPEK--GDYNSEIHQI 144
Cdd:TIGR02168 312 ANLERQLEELEAQLEELESKLDELAEELAELEEKLEElKEELESLEAELEEleaeleeleSRLEELEEqlETLRSKVAQL 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 145 TRERDELQRMLERFEKYMEDIQSNVKLLTAERDKL-----SVLYNEAQEELSALRKESTQTTAPHNIV---------SLM 210
Cdd:TIGR02168 392 ELQIASLNNEIERLEARLERLEDRRERLQQEIEELlkkleEAELKELQAELEELEEELEELQEELERLeealeelreELE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 211 EKEKEL--ALSDLRRIMAEKEALREKLEHIEEVSLFGKSELEKTIE---HLTCVNHQLES-EKYEL-KSKVL-------- 275
Cdd:TIGR02168 472 EAEQALdaAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGlsgILGVLSELISVdEGYEAaIEAALggrlqavv 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 276 -----IMKETIESLENK-------LKVQAQKFSHVAGDSSHQKTEVNSLRIVNEQLQRSVDDYQHRLSIKRG------EL 337
Cdd:TIGR02168 552 venlnAAKKAIAFLKQNelgrvtfLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGgvlvvdDL 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 338 ESAQAQIKileeKIDELNLKMTSQDEEAHvmkkTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMISEC 417
Cdd:TIGR02168 632 DNALELAK----KLRPGYRIVTLDGDLVR----PGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAEL 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 418 ESSVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDL-------ATMARENQEISLELEAAVQE 490
Cdd:TIGR02168 704 RKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELteleaeiEELEERLEEAEEELAEAEAE 783
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 491 KEEMKSRVHKYITEVSRWESLMAAKEKENQDLLDRF-------QMLHNRAEDWEVKAHQAEGESSSVRLELLSIDTERRH 563
Cdd:TIGR02168 784 IEELEAQIEQLKEELKALREALDELRAELTLLNEEAanlrerlESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEE 863
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 564 LRERVELLEKEIQEHINAHHAYESQISSMAKAMSRLEEELRHQEDEKATVLNDLSSLRELCIKLDSGKDIMTQQLNSKNL 643
Cdd:TIGR02168 864 LEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
730 740 750
....*....|....*....|....*....|....*....
gi 530376879 644 EF-ERVVVELENVKSESDLLKKQLSNERHTVKNLESLLA 681
Cdd:TIGR02168 944 RLsEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
262-577 |
1.54e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.63 E-value: 1.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 262 QLESEKYELKSKVLIMKETIESLENKLKVQAQKFSHVAGDSSHQKTEVNSLRIVNEQLQRSVDDYQHRLSIKRGELESAQ 341
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 342 AQIKILEEKIDELNL-------KMTSQDEEAHVMKKTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMI 414
Cdd:TIGR02168 761 AEIEELEERLEEAEEelaeaeaEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL 840
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 415 SECESSVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEAAVQEKEEM 494
Cdd:TIGR02168 841 EDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEEL 920
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 495 KSRVHKYITEVSRWESlmaakekENQDLLDRFQMLHNRAEDwEVKAHQAEgesssvrlellsIDTERRHLRERVELLEKE 574
Cdd:TIGR02168 921 REKLAQLELRLEGLEV-------RIDNLQERLSEEYSLTLE-EAEALENK------------IEDDEEEARRRLKRLENK 980
|
...
gi 530376879 575 IQE 577
Cdd:TIGR02168 981 IKE 983
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
150-497 |
1.40e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.54 E-value: 1.40e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 150 ELQRMLERFEKYMEDIQSNVKLLTAERDKLSVLYNEAQEELSALRKESTQttaphnivslMEKEKELALSDLRRIMAEKE 229
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEE----------LSRQISALRKDLARLEAEVE 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 230 ALREKLEHIEEVSlfgkSELEKTIEHLTCVNHQLESEKYELKSKVLIMKETIESLENKLKVQAQKFSHVagdsshqKTEV 309
Cdd:TIGR02168 744 QLEERIAQLSKEL----TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDEL-------RAEL 812
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 310 NSLRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNLKMTSQDEEAHVMKKTIGVIDKEKDFLQETVDEK 389
Cdd:TIGR02168 813 TLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALL 892
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 390 TEKIANLQENLANKEKAVAQMKIMISECESSVNQLKETLVNRDREINSLRRQLDAAHK-ELDEVGRSREIAFKENRRLQD 468
Cdd:TIGR02168 893 RSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSlTLEEAEALENKIEDDEEEARR 972
|
330 340
....*....|....*....|....*....
gi 530376879 469 DLATMARENQEISLELEAAVQEKEEMKSR 497
Cdd:TIGR02168 973 RLKRLENKIKELGPVNLAAIEEYEELKER 1001
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
329-609 |
3.20e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.02 E-value: 3.20e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 329 RLSIKRGELESAQAQIKILEEKIDELNLKMTSQDEEAHVMKKTIGVIDKEKDFLQETVDEKTE-KIANLQENLANKEKAV 407
Cdd:TIGR02169 224 EGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEeEQLRVKEKIGELEAEI 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 408 AQMKIMISECESSVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEAA 487
Cdd:TIGR02169 304 ASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAET 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 488 VQEKEEMKSRVHKYITEVSRWESLMAAKEKENQDLLDRFQMLHNRAEDWEVKAHQAEGESSSVRLELLSIDTERRHLRER 567
Cdd:TIGR02169 384 RDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAAD 463
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 530376879 568 VELLEKEIQEHINAHHAYESQISSMAKAMSRLEEELRHQEDE 609
Cdd:TIGR02169 464 LSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEER 505
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
278-759 |
9.46e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.73 E-value: 9.46e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 278 KETIESLENKLKVQAQKFSHVagdsshqKTEVNSLRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNLK 357
Cdd:COG1196 245 EAELEELEAELEELEAELAEL-------EAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEER 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 358 MTSQDEEAHVMKKTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKETLVNRDREINS 437
Cdd:COG1196 318 LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 438 LRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEK 517
Cdd:COG1196 398 LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEA 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 518 ENQDLLDRFQMLHNRAEDWEVKAHQAEGESSSVRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMS 597
Cdd:COG1196 478 ALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDE 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 598 RLEEELRHQEDEKATVLNDLSSLRElcikLDSGKDIMTQQLNSKNLEFERVVVELENVKSESDLLKKQLSNERHTVKNLE 677
Cdd:COG1196 558 VAAAAIEYLKAAKAGRATFLPLDKI----RARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLE 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 678 SLLATNRDKEFHSHLTSHEKDTEIQLLKEKLTLSESKLTSQSRENTMLRAKVAQLQTDYDALKRQISTERYERERAIQEM 757
Cdd:COG1196 634 AALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAE 713
|
..
gi 530376879 758 RR 759
Cdd:COG1196 714 EE 715
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
387-622 |
2.61e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.19 E-value: 2.61e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 387 DEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKENRRL 466
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 467 QDDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENQDLLDRFQMLHNRAEDWEVKAHQAEGE 546
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA 394
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 530376879 547 SSSVRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSRLEEELRHQEDEKATVLNDLSSLRE 622
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE 470
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
318-611 |
2.80e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.19 E-value: 2.80e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 318 QLQRSVDDYQHRLSIKRgeLESAQAQIKILEEKIDELNLKMTSQDEEahvmkktIGVIDKEKDFLQETVDEKTEKIANLQ 397
Cdd:COG1196 217 ELKEELKELEAELLLLK--LRELEAELEELEAELEELEAELEELEAE-------LAELEAELEELRLELEELELELEEAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 398 ENLANKEKAVAQMKIMISECESSVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMAREN 477
Cdd:COG1196 288 AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 478 QEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENQDLLDRFQMLHNRAEDWEVKAHQAEGESSSVRLELLSI 557
Cdd:COG1196 368 LEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA 447
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 530376879 558 DTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSRLEEELRHQEDEKA 611
Cdd:COG1196 448 AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEA 501
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
135-496 |
9.76e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.39 E-value: 9.76e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 135 GDYNSEIHQITRERDELQRMLERFEKYMEDIQSNVKLLTAERDKLsvlyneaqEELSALRKESTQTTAphnivSLMEKEK 214
Cdd:TIGR02169 166 AEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKA--------ERYQALLKEKREYEG-----YELLKEK 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 215 ELALSDLRRIMAEKEALREKLEHIEEVslfgKSELEKTIEHLTCVNHQL--------ESEKYELKSKVLIMKETIESLEN 286
Cdd:TIGR02169 233 EALERQKEAIERQLASLEEELEKLTEE----ISELEKRLEEIEQLLEELnkkikdlgEEEQLRVKEKIGELEAEIASLER 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 287 KLKVQAQKFSHVAGDSSHQKTEVNSLRIVNEQLQRSVDDYQhrlsikrGELESAQAQIKILEEKIDELNLKMTSQDEEAH 366
Cdd:TIGR02169 309 SIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEER-------KRRDKLTEEYAELKEELEDLRAELEEVDKEFA 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 367 VMKKTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKETLVNRDREINSLRRQLDAAH 446
Cdd:TIGR02169 382 ETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLA 461
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 530376879 447 KELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEAAVQEKEEMKS 496
Cdd:TIGR02169 462 ADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRA 511
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
209-773 |
1.07e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.26 E-value: 1.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 209 LMEKEKELALSDLRRIMAEKEALREKLEHIE---EVSLFGKSELEKTIEHLTCVNHQLESEKYELKSKVLIMKETIESLE 285
Cdd:COG1196 222 LKELEAELLLLKLRELEAELEELEAELEELEaelEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 286 NKLKVQAQKfshvagdsshqktevnslrivNEQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNLKMTSQDEEA 365
Cdd:COG1196 302 QDIARLEER---------------------RRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 366 HVMKKTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKETLVNRDREINSLRRQLDAA 445
Cdd:COG1196 361 AEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 446 HKELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEAAVQEKEEMKSRVHKYI-TEVSRWESLMAAKEKENQDLLD 524
Cdd:COG1196 441 EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLeAEADYEGFLEGVKAALLLAGLR 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 525 RFQMLHNRAEDWEVKAHQAEGESSSVRLELLSIDTERRHLRERVELLEKEI---------QEHINAHHAYESQISSMAKA 595
Cdd:COG1196 521 GLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAgratflpldKIRARAALAAALARGAIGAA 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 596 MSRLEEELRHQEDEKATVLNDLSSLRELCIKLDSGKDIMtqqlnsknlefERVVVELENVKSESDLLKKQLSNERHTVKN 675
Cdd:COG1196 601 VDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRA-----------VTLAGRLREVTLEGEGGSAGGSLTGGSRRE 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 676 LESLLATNRDKEFHSHLTSHEKDTEIQLLKEKLTLSESKLTSQSRENTMLRAKVAQLQTDYDALKRQISTERYERERAIQ 755
Cdd:COG1196 670 LLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLE 749
|
570
....*....|....*...
gi 530376879 756 EMRRHGLATPPLSSTLRS 773
Cdd:COG1196 750 EEALEELPEPPDLEELER 767
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
174-759 |
1.25e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 1.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 174 AERDKLSVLYNEAQEELSALRKESTQTTAPHNIVSL----MEKEKELALSDLRRIMAEKEALREKLEHIEEvslfGKSEL 249
Cdd:TIGR02168 239 EELEELQEELKEAEEELEELTAELQELEEKLEELRLevseLEEEIEELQKELYALANEISRLEQQKQILRE----RLANL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 250 EKTIEHLTCVNHQLESEKYELKSKVLIMKETIESLENKLKVQAQKFSHVAGDSSHQKTEVNSLRIVNEQLQRSVDDYQHR 329
Cdd:TIGR02168 315 ERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQ 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 330 LSIKRGELESAQAQIKILEEKIDELnlkmtSQDEEAHVMKKTigviDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQ 409
Cdd:TIGR02168 395 IASLNNEIERLEARLERLEDRRERL-----QQEIEELLKKLE----EAELKELQAELEELEEELEELQEELERLEEALEE 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 410 MKIMISECESSVNQLKETLVNRDREINSLRRQLDaahkELDEVGRSREIAFKENRRLQDDLATMA---RENQEISLELEA 486
Cdd:TIGR02168 466 LREELEEAEQALDAAERELAQLQARLDSLERLQE----NLEGFSEGVKALLKNQSGLSGILGVLSeliSVDEGYEAAIEA 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 487 AVQEkeemksRVHKYITE-VSRWESLMAAKEKENQD-----LLDRFQMLHNRAEDWEVKAHQAEGESSSVRLE------- 553
Cdd:TIGR02168 542 ALGG------RLQAVVVEnLNAAKKAIAFLKQNELGrvtflPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVkfdpklr 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 554 ---------LLSIDTERRHLRERVELLEKEI-------------------QEHINAHHAYESQISSMAKAMSRLEEELRH 605
Cdd:TIGR02168 616 kalsyllggVLVVDDLDNALELAKKLRPGYRivtldgdlvrpggvitggsAKTNSSILERRREIEELEEKIEELEEKIAE 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 606 QEDEKATVLNDLSSLRELCIKLDSGKDIMTQQLNSKNLEFERVVVELENVKSESDLLKKQLSNERHTVKNLESLLATNRD 685
Cdd:TIGR02168 696 LEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEE 775
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 530376879 686 KEFHSHLTSHEKDTEIQLLKEKLTLSESKLTSQSRENTMLRAKVAQLQTDYDALKRQISTERYERERAIQEMRR 759
Cdd:TIGR02168 776 ELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE 849
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
188-679 |
1.33e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 58.51 E-value: 1.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 188 EELSALRKESTQTTAphnIVSLMEKEKELALSDLRRIMAEKEALREKLEHIEEvslfgkseLEKTIEHLTCVNHQLESEK 267
Cdd:PRK02224 206 ERLNGLESELAELDE---EIERYEEQREQARETRDEADEVLEEHEERREELET--------LEAEIEDLRETIAETERER 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 268 YELKSKVLIMKETIESLENKLkvqaqkfSHVAGDSSHQKTEVNSLRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKIL 347
Cdd:PRK02224 275 EELAEEVRDLRERLEELEEER-------DDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESL 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 348 EEKIDELnlkmtsqDEEAHVMKKTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKET 427
Cdd:PRK02224 348 REDADDL-------EERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 428 LVNRDREINSLRRQLDAAHKELDEVGRSRE-------------------IAFKENRR--LQDDLATMARENQEISLELEA 486
Cdd:PRK02224 421 RDELREREAELEATLRTARERVEEAEALLEagkcpecgqpvegsphvetIEEDRERVeeLEAELEDLEEEVEEVEERLER 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 487 AVQEKeEMKSRVHKYITEVSRWESLMAAKEKENQDLLDRFQMLHNR-------AEDWEVKAHQAEGESSSVRLELLSIDT 559
Cdd:PRK02224 501 AEDLV-EAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERaaeleaeAEEKREAAAEAEEEAEEAREEVAELNS 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 560 ERRHLRERVELLEKeIQEHINAHHAYESQISSMAKAMSRLEEelrhQEDEKATVLNDLSS-LRELCIKLDsGKDIMTQQL 638
Cdd:PRK02224 580 KLAELKERIESLER-IRTLLAAIADAEDEIERLREKREALAE----LNDERRERLAEKRErKRELEAEFD-EARIEEARE 653
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 530376879 639 NSKNLE--FERVVVELENVKSESDLLKKQLSNERHTVKNLESL 679
Cdd:PRK02224 654 DKERAEeyLEQVEEKLDELREERDDLQAEIGAVENELEELEEL 696
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
138-623 |
1.38e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 58.49 E-value: 1.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 138 NSEIHQITRERDELQRMLERFEKYMEDIQSNVKLLTAERDKLSVLYNEAQEELSALRKESTQTTAPHNIVSLMEKEKELA 217
Cdd:TIGR04523 158 NNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKK 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 218 LSDLRRIMAEKEALREKLEHIEEVSLFGKSELEKTIEHLTCVNH---QLESEKYELKSKVLIMK---------------- 278
Cdd:TIGR04523 238 QQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKkikELEKQLNQLKSEISDLNnqkeqdwnkelkselk 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 279 ---ETIESLENKLKVQAQKFSHVAGDSSHQKTEVNSLRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELN 355
Cdd:TIGR04523 318 nqeKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLE 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 356 LKMTSQDEEAHVMKKTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKETLVNRDREI 435
Cdd:TIGR04523 398 SKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSI 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 436 NSLRRQLDAAHKELDEVgrsreiafkenrrlQDDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAK 515
Cdd:TIGR04523 478 NKIKQNLEQKQKELKSK--------------EKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDL 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 516 EKENQDLLDRFqmlhNRAEDWEVKAHQAEgESSSVRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKA 595
Cdd:TIGR04523 544 EDELNKDDFEL----KKENLEKEIDEKNK-EIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKE 618
|
490 500
....*....|....*....|....*...
gi 530376879 596 MSRLEEELRHQEDEKATVLNDLSSLREL 623
Cdd:TIGR04523 619 LEKAKKENEKLSSIIKNIKSKKNKLKQE 646
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
90-493 |
3.90e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.00 E-value: 3.90e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 90 LKGIEEERDYYKKELERLQHIIQRRSCSTSYSAREKSSIfrtpekgdyNSEIHQITRERDELQRMLERFEKYMEDIQSNV 169
Cdd:TIGR02169 683 LEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEI---------EKEIEQLEQEEEKLKERLEELEEDLSSLEQEI 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 170 KLLTAERDKLSVLYNEAQEELSALRKEstqttaphnivsLMEKEKELALSDLRRIMAEKEALREKLEHIEEVSlfgkSEL 249
Cdd:TIGR02169 754 ENVKSELKELEARIEELEEDLHKLEEA------------LNDLEARLSHSRIPEIQAELSKLEEEVSRIEARL----REI 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 250 EKTIEHLTCVNHQLESEKYELKSKVLIMKETIESLENKLKvqaqkfshvagdssHQKTEVNSLRIVNEQLQRSVDDYQHR 329
Cdd:TIGR02169 818 EQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIE--------------NLNGKKEELEEELEELEAALRDLESR 883
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 330 LSIKRGELESAQAQIKILEEKIDELNLKmtsqdeeahvmkktigvIDKEKDFLQETvdekTEKIANLQENLANKEKAVAQ 409
Cdd:TIGR02169 884 LGDLKKERDELEAQLRELERKIEELEAQ-----------------IEKKRKRLSEL----KAKLEALEEELSEIEDPKGE 942
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 410 MkIMISECESSVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSREiafkenrRLQDDLATMARENQEISLELEAAVQ 489
Cdd:TIGR02169 943 D-EEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLD-------ELKEKRAKLEEERKAILERIEEYEK 1014
|
....
gi 530376879 490 EKEE 493
Cdd:TIGR02169 1015 KKRE 1018
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
155-759 |
1.54e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 1.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 155 LERFEKYMEDIQSNVKLLTAERDKLSVLYNEAQEELSALRKESTQttaphnivslMEKEKELALSDLRRIMAEKEALREK 234
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSE----------LEEEIEELQKELYALANEISRLEQQ 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 235 LEHIEEvslfGKSELEKTIEHLTCVNHQLESEKYELKSKVLIMKETIESLENKLKVQAQKFSHVAGDSSHQKTEVNSLRI 314
Cdd:TIGR02168 304 KQILRE----RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 315 VNEQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELnlkmtSQDEEAHVMKKTigviDKEKDFLQETVDEKTEKIA 394
Cdd:TIGR02168 380 QLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERL-----QQEIEELLKKLE----EAELKELQAELEELEEELE 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 395 NLQENLANKEKAVAQMKIMISECESSVNQLKETLVNRDREINSLRRQLDaahkELDEVGRSREIAFKENRRLQDDLATMA 474
Cdd:TIGR02168 451 ELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQE----NLEGFSEGVKALLKNQSGLSGILGVLS 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 475 ---RENQEISLELEAAVQEkeemksRVHKYITE-VSRWESLMAAKEKENQD-----LLDRFQMLHNRAEDWEVKAHQAEG 545
Cdd:TIGR02168 527 eliSVDEGYEAAIEAALGG------RLQAVVVEnLNAAKKAIAFLKQNELGrvtflPLDSIKGTEIQGNDREILKNIEGF 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 546 ESSSVRLE----------------LLSIDTERRHLRERVELLEKEI-------------------QEHINAHHAYESQIS 590
Cdd:TIGR02168 601 LGVAKDLVkfdpklrkalsyllggVLVVDDLDNALELAKKLRPGYRivtldgdlvrpggvitggsAKTNSSILERRREIE 680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 591 SMAKAMSRLEEELRHQEDEKATVLNDLSSLRELCIKLDSGKDIMTQQLNSKNLEFERVVVELENVKSESDLLKKQLSNER 670
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 671 HTVKNLESLLATNRDKEfhshltsHEKDTEIQLLKEKLTLSESKLTSQSRENTMLRAKVAQLQTDYDALKRQISTERYER 750
Cdd:TIGR02168 761 AEIEELEERLEEAEEEL-------AEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRI 833
|
....*....
gi 530376879 751 ERAIQEMRR 759
Cdd:TIGR02168 834 AATERRLED 842
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
323-678 |
1.87e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.07 E-value: 1.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 323 VDDYQHRLSIKRGELESAQAQIKILEEKIDELNLKM-TSQDEEAHVMKktigvIDKEKDFLQETvdEKTEKIANLQENLA 401
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLeRLRREREKAER-----YQALLKEKREY--EGYELLKEKEALER 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 402 NKEKAVAQmkimISECESSVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKEnrrlqdDLATMARENQEIS 481
Cdd:TIGR02169 238 QKEAIERQ----LASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKE------KIGELEAEIASLE 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 482 LELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENQDLLDRFQMLHNraedwEVKAHQAEGESSSVRLEllSIDTER 561
Cdd:TIGR02169 308 RSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTE-----EYAELKEELEDLRAELE--EVDKEF 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 562 RHLRERVELLEKEIQEhinahhaYESQISSMAKAMSRLEEELRHQEDEKATVLNDLSSLRELCIKLDSGKDimtqqlnSK 641
Cdd:TIGR02169 381 AETRDELKDYREKLEK-------LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKE-------DK 446
|
330 340 350
....*....|....*....|....*....|....*..
gi 530376879 642 NLEFERVVVELENVKSESDLLKKQLSNERHTVKNLES 678
Cdd:TIGR02169 447 ALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEK 483
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
5-747 |
6.86e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 6.86e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 5 EETMAKLQLELNLCQKEKERLSDEllvKSDLEtvvhqleqEKQRLSKKVESFAVTERQLTLEVermrLEHGIKRRDRSPS 84
Cdd:TIGR02169 183 EENIERLDLIIDEKRQQLERLRRE---REKAE--------RYQALLKEKREYEGYELLKEKEA----LERQKEAIERQLA 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 85 RLDTFLKGIEEERDYYKKELERLQHIIQRRSCSTSYSAREKSSIFRTpekgdynsEIHQITRERDELQRMLERFEKYMED 164
Cdd:TIGR02169 248 SLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKE--------KIGELEAEIASLERSIAEKERELED 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 165 IQSNVKLLTAERDKLSVLYNEAQEELSALRKESTQTTAphnIVSLMEKEKELALSDLRRIMAEKEALREKL-EHIEEVSL 243
Cdd:TIGR02169 320 AEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTE---EYAELKEELEDLRAELEEVDKEFAETRDELkDYREKLEK 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 244 FG--KSELEKTIEHLTCVNHQLESEKYELKSKVLIMKETIESLENKLKVQAQKFSHVAGDSSHQKTEVNSLRIVNEQLQR 321
Cdd:TIGR02169 397 LKreINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 322 SVDDYQHRLSIKRGELESAQAQIKILEEKIDEL--NLKMTSQD--------------EEAHVMKKTIGVIDKEKDFLQET 385
Cdd:TIGR02169 477 EYDRVEKELSKLQRELAEAEAQARASEERVRGGraVEEVLKASiqgvhgtvaqlgsvGERYATAIEVAAGNRLNNVVVED 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 386 VDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKET------LVNRDREINS----------LRRQLDAAHKEL 449
Cdd:TIGR02169 557 DAVAKEAIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVigfavdLVEFDPKYEPafkyvfgdtlVVEDIEAARRLM 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 450 DEV-------------------GRSREIAFKENRRLQDDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWES 510
Cdd:TIGR02169 637 GKYrmvtlegelfeksgamtggSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASR 716
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 511 LMAAKEKENQDLLDRFQMLHNRAEDWEVKahqaegesssvrleLLSIDTERRHLRERVELLEKEIQEhinahhaYESQIS 590
Cdd:TIGR02169 717 KIGEIEKEIEQLEQEEEKLKERLEELEED--------------LSSLEQEIENVKSELKELEARIEE-------LEEDLH 775
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 591 SMAKAMSRLEEELRHQEDEKATvlNDLSSLRELCIKLDSGKDIMTQQLNSKNLEFERVVVELENVKSESDLLKKQLSNER 670
Cdd:TIGR02169 776 KLEEALNDLEARLSHSRIPEIQ--AELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIE 853
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 530376879 671 HTVKNLESLLAtnrdkefhshltshEKDTEIQLLKEKLTLSESKLTSQSRENTMLRAKVAQLQTDYDALKRQISTER 747
Cdd:TIGR02169 854 KEIENLNGKKE--------------ELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKR 916
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
407-681 |
9.39e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.76 E-value: 9.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 407 VAQMKIMISECESSVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEA 486
Cdd:TIGR02169 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIEN 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 487 AVQEKEEmksrvhkYITEVSRWESLMAAKEKENQDLLDRfqMLHNRAEDWEVKAHQAEGESSSVRLELLSIDTERRHLRE 566
Cdd:TIGR02169 756 VKSELKE-------LEARIEELEEDLHKLEEALNDLEAR--LSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTL 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 567 RVELLEKEIQEHINAHHAYESQISSMAKAMSRLEEELRHQEDEKATVLNDLSSLRELCIKLDSGKDIMTQQLNSKNLEFE 646
Cdd:TIGR02169 827 EKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIE 906
|
250 260 270
....*....|....*....|....*....|....*
gi 530376879 647 RVVVELENVKSESDLLKKQLSNERHTVKNLESLLA 681
Cdd:TIGR02169 907 ELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKG 941
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
388-681 |
1.27e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.37 E-value: 1.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 388 EKTEKIANLQENLANKEKAVAQMKImisecessvNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKENRRLQ 467
Cdd:TIGR02168 210 EKAERYKELKAELRELELALLVLRL---------EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 468 DDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENQDLLDRFqmlhnraEDWEVKAHQAEGES 547
Cdd:TIGR02168 281 EEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEEL-------AELEEKLEELKEEL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 548 SSVRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSRLEEELRHQEDEKATVLNDLSSLRELCIKL 627
Cdd:TIGR02168 354 ESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA 433
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 530376879 628 DSGKDIMT-----QQLNSKNLEFERVVVELENVKSESDLLKKQLSNERHTVKNLESLLA 681
Cdd:TIGR02168 434 ELKELQAEleeleEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLD 492
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
327-611 |
1.95e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.61 E-value: 1.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 327 QHRLSIKRGELESAQAQIKILEEKIDELNLKMTSQDEEAHVMKKTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKa 406
Cdd:TIGR02169 680 RERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKS- 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 407 vaqmkiMISECESSVNQLKETLVNRDREINSLRRQLdaAHKELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEA 486
Cdd:TIGR02169 759 ------ELKELEARIEELEEDLHKLEEALNDLEARL--SHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEY 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 487 AVQEKEEMKSRVHKyitevsrWESLMAAKEKENQDLLDRFQMLHNRAEDWEVKAHQAEGESSSVRLELLSIDTERRHLRE 566
Cdd:TIGR02169 831 LEKEIQELQEQRID-------LKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELER 903
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 530376879 567 RVELLEKEIQEHinahhayESQISSMAKAMSRLEEELRHQEDEKA 611
Cdd:TIGR02169 904 KIEELEAQIEKK-------RKRLSELKAKLEALEEELSEIEDPKG 941
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
4-498 |
2.04e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.66 E-value: 2.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 4 LEETMAKLQLELN-LCQKEKERLSDELLVKSDLETVVHQLEQEKQRLSKKVESFAVTERQLTLEVERMR--LEHGIKRRD 80
Cdd:pfam15921 269 IEQLISEHEVEITgLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKrmYEDKIEELE 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 81 RSPSRLDTFLKGIEEERDYYKKEL----ERLQHIIQRRSCSTSYSAREKSSIFRTPEKGDYNS-EIHQITRERDELQRML 155
Cdd:pfam15921 349 KQLVLANSELTEARTERDQFSQESgnldDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSiTIDHLRRELDDRNMEV 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 156 ERFEKYMEDIQS---------------------NVKLLTAERDKLSVLYNEAQEELSA--LRKESTQTTAPHNIVSLMEK 212
Cdd:pfam15921 429 QRLEALLKAMKSecqgqmerqmaaiqgknesleKVSSLTAQLESTKEMLRKVVEELTAkkMTLESSERTVSDLTASLQEK 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 213 EKELALSDlrrimAEKEALREKLEhieeVSLFGKSELEKTIEHLTCVNHQLESEKYELKSKVLIMKETIESLENKLKVQA 292
Cdd:pfam15921 509 ERAIEATN-----AEITKLRSRVD----LKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVG 579
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 293 QkfshvagdssHQKTeVNSLRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNLKMTSQDEEAHVMKKTI 372
Cdd:pfam15921 580 Q----------HGRT-AGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAV 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 373 GVIDKEKDFLQETVDEKTEKIANLQE-------NLANK----EKAVAQMKIMISECESSVNQLKETL------------- 428
Cdd:pfam15921 649 KDIKQERDQLLNEVKTSRNELNSLSEdyevlkrNFRNKseemETTTNKLKMQLKSAQSELEQTRNTLksmegsdghamkv 728
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 530376879 429 -VNRDREINSLRRQLDAAHKELD-------EVGRSREIAFKENRRLQDDLATMARENQEISLELEAAVQEKEEMKSRV 498
Cdd:pfam15921 729 aMGMQKQITAKRGQIDALQSKIQfleeamtNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKV 806
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
19-622 |
4.35e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.32 E-value: 4.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 19 QKEKERLSDELLVKSD--LETVVHQLEQEKQRLSKKVESFAVTERQLTLEVERMRLEHgikrrdrspsrldtflkgiEEE 96
Cdd:COG1196 219 KEELKELEAELLLLKLreLEAELEELEAELEELEAELEELEAELAELEAELEELRLEL-------------------EEL 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 97 RDyykkELERLQhiiqrrscstsysarekssifrtpekGDYNSEIHQITRERDELQRMLERfekyMEDIQSNVKLLTAER 176
Cdd:COG1196 280 EL----ELEEAQ--------------------------AEEYELLAELARLEQDIARLEER----RRELEERLEELEEEL 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 177 DKLSVLYNEAQEELSALRKESTQTTAPHNIVSLMEKEKELALSDLRRIMAEKEALREKLEHIEEVSLFGKSELEKTIEHL 256
Cdd:COG1196 326 AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 257 TCVNHQLESEKYELKSKVLIMKETIESLENKLKVQAQKFSHVAGDSSHQKTEVNSLRIVNEQLQRSVDDYQHRLSIKRGE 336
Cdd:COG1196 406 EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEE 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 337 LESAQAQIKILEEKIDELNLKmTSQDEEAHVMKKTIGVIDK-----EKDFLQETVDEKTEKIANLQENLANKEKAvaqmk 411
Cdd:COG1196 486 LAEAAARLLLLLEAEADYEGF-LEGVKAALLLAGLRGLAGAvavliGVEAAYEAALEAALAAALQNIVVEDDEVA----- 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 412 imiSECESSVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEAAVQEK 491
Cdd:COG1196 560 ---AAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAAL 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 492 EEMKSRVHKYITEVSRWESLMAAKEKENQDLLDRFQMLHNRAEDWEVKAHQAEGESSSVRLELLSIDTERRHLRERVELL 571
Cdd:COG1196 637 RRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEER 716
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 530376879 572 EKEIQEHINAHHAYESQISSMAKAMSRLEEELRHQEDEKATVLNDLSSLRE 622
Cdd:COG1196 717 LEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELER 767
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
320-525 |
7.08e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 7.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 320 QRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNLKMTSQDEEAHVMKKTIGVIDKEKDFLQETVDEKTEKIANLQEN 399
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 400 LANKEKAVAQM-----------KIMISECESSVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKENRRLQD 468
Cdd:COG4942 99 LEAQKEELAELlralyrlgrqpPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 530376879 469 DLATMARENQeislELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENQDLLDR 525
Cdd:COG4942 179 LLAELEEERA----ALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
435-685 |
1.26e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.88 E-value: 1.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 435 INSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMARENQEISlELEAAVQEKEEMKsrvhkyitevsrweslmAA 514
Cdd:PRK02224 208 LNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELE-TLEAEIEDLRETI-----------------AE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 515 KEKENQDLLDRFQMLHNRAEDWEVKAHQAEGESSSVRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAK 594
Cdd:PRK02224 270 TEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLRE 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 595 AMSRLEEELRHQEDEKATVLNDLSSLRELCIKLDSGKDIMTQQLNSKNLEFERVVVELENVKSESDLLKKQLSNERHTVK 674
Cdd:PRK02224 350 DADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREA 429
|
250
....*....|.
gi 530376879 675 NLESLLATNRD 685
Cdd:PRK02224 430 ELEATLRTARE 440
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
383-602 |
1.97e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 1.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 383 QETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKE 462
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 463 NRRLQDDLATMARENQEISLELEAAV---QEKEEMKSRVHKYITEVSRW-ESLMAAKEKENQDLLDRFQMLHNRAEDWEV 538
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALllsPEDFLDAVRRLQYLKYLAPArREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 530376879 539 KAHQAEGESSSVRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSRLEEE 602
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1-577 |
2.35e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.01 E-value: 2.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 1 MQDLEETMAKLQLELNLCQKEKERLSDELlvkSDLETVVHQLEQEKQRLSKKVESFAVTERQLTLEVERmrLEHGIKRRD 80
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAEL---AELEAELEELRLELEELELELEEAQAEEYELLAELAR--LEQDIARLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 81 RSpsrldtfLKGIEEERDYYKKELERLQHiiQRRSCSTSYSAREKSSIFRTPEKGDYNSEIHQITRERDELQRMLERFEK 160
Cdd:COG1196 309 ER-------RRELEERLEELEEELAELEE--ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 161 ymEDIQSNVKLLTAERDKLSVLYNEAQEELSALRKESTQTTAPHNIVSLMEKEKELALSDLRRIMAEKEALREKLEHIEE 240
Cdd:COG1196 380 --ELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 241 vslfgKSELEKTIEHLTCVNHQLESEKYELKSKVLIMKETIESLENKLKVQAQ-----KFSHVAGDSSHQKTEVNSLRIV 315
Cdd:COG1196 458 -----EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGflegvKAALLLAGLRGLAGAVAVLIGV 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 316 NEQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELN-----LKMTSQDEEAHVMKKTIGVIDKEKDFLQETVDEKT 390
Cdd:COG1196 533 EAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGratflPLDKIRARAALAAALARGAIGAAVDLVASDLREAD 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 391 EKIANLQENLANKEKAVAQMKimisecesSVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDL 470
Cdd:COG1196 613 ARYYVLGDTLLGRTLVAARLE--------AALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEEL 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 471 ATMARENQEISLELEAAVQEKEEMKSRvhkyitevsrwesLMAAKEKENQDLLDRFQMLHNRAEDWEVKAHQAEGESSSV 550
Cdd:COG1196 685 AERLAEEELELEEALLAEEEEERELAE-------------AEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEE 751
|
570 580
....*....|....*....|....*..
gi 530376879 551 RLELLSIDTERRHLRERVELLEKEIQE 577
Cdd:COG1196 752 ALEELPEPPDLEELERELERLEREIEA 778
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
212-437 |
4.71e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 4.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 212 KEKELALSDLRRIMAEKEALREKLEHIEEVSLFGKSELEKTIEHLTCVNHQLESEKYELKSKVLIMKETIESLENKLKVQ 291
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 292 AQKFSHVAGDSSHQKTEVNSLRIVNeqlQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNLKMTSQDEEAHVMKKT 371
Cdd:COG4942 103 KEELAELLRALYRLGRQPPLALLLS---PEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 530376879 372 IGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKETLVNRDREINS 437
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
97-759 |
5.13e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.04 E-value: 5.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 97 RDYYKKELERLQHIIQ--RRSCSTSYSAREKSSIFRTPEKGDYNSEIHQITRERDELQRMLERFEKYMED----IQSNVK 170
Cdd:pfam15921 73 KEHIERVLEEYSHQVKdlQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDlrnqLQNTVH 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 171 LLTAERDKLSVLYNEAQEELSALRKestqttaphnivslMEKEKELALSDLRRIMAEKEALREK--LEHIEEVSLFGKS- 247
Cdd:pfam15921 153 ELEAAKCLKEDMLEDSNTQIEQLRK--------------MMLSHEGVLQEIRSILVDFEEASGKkiYEHDSMSTMHFRSl 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 248 ---------ELEKTIEHLTC----VNHQLESEKYELKSKVLIM----KETIESLENKLKVQAQKFSHVAGDSSHQKTEVN 310
Cdd:pfam15921 219 gsaiskilrELDTEISYLKGrifpVEDQLEALKSESQNKIELLlqqhQDRIEQLISEHEVEITGLTEKASSARSQANSIQ 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 311 S-LRIVNEQLQ-------RSVDDYQHRLSIKRGELESAQaqiKILEEKIDEL-------NLKMTSQDEEAHVMKKTIGVI 375
Cdd:pfam15921 299 SqLEIIQEQARnqnsmymRQLSDLESTVSQLRSELREAK---RMYEDKIEELekqlvlaNSELTEARTERDQFSQESGNL 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 376 D------------KEKDFLQETVDEK---------TEKIANLQENLANKEKAV----AQMKIMISECESSVNQLKETLVN 430
Cdd:pfam15921 376 DdqlqklladlhkREKELSLEKEQNKrlwdrdtgnSITIDHLRRELDDRNMEVqrleALLKAMKSECQGQMERQMAAIQG 455
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 431 RD---REINSLRRQLDAAHKELDEVGR---SREIAFKENRRLQDDLATMARENQEislELEAAVQEKEEMKSRVHKYITE 504
Cdd:pfam15921 456 KNeslEKVSSLTAQLESTKEMLRKVVEeltAKKMTLESSERTVSDLTASLQEKER---AIEATNAEITKLRSRVDLKLQE 532
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 505 VSRWES-----------------LMAAKEKENQDLLDRFQML------HNR-AEDWEVKAHQAEGESSSVRLELLSI--- 557
Cdd:pfam15921 533 LQHLKNegdhlrnvqtecealklQMAEKDKVIEILRQQIENMtqlvgqHGRtAGAMQVEKAQLEKEINDRRLELQEFkil 612
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 558 ----DTERRHLRERVELLEKEIQEHINAHhayesqiSSMAKAMSRLEEELRHQEDEKATVLNDLSSLRElcikldsGKDI 633
Cdd:pfam15921 613 kdkkDAKIRELEARVSDLELEKVKLVNAG-------SERLRAVKDIKQERDQLLNEVKTSRNELNSLSE-------DYEV 678
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 634 MTQQLNSKNLEFERVVVELenvKSESDLLKKQLSNERHTVKNLESLLATNRDKEFHSHLTSHEKDTEIQLLKEKLTLSES 713
Cdd:pfam15921 679 LKRNFRNKSEEMETTTNKL---KMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEE 755
|
730 740 750 760
....*....|....*....|....*....|....*....|....*.
gi 530376879 714 KLTSQSRENTMLRAKVAQLQTDYDALKRQISTERYERERAIQEMRR 759
Cdd:pfam15921 756 AMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERR 801
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1-600 |
6.44e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.60 E-value: 6.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 1 MQDLEETMAKLQLELNLCQKEKERLSDELLVKSDLETVVHQLEQEKQRLSKKVESFAVTERQLTLEVERMRLEhgIKRRD 80
Cdd:PRK03918 157 LDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKE--VKELE 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 81 RSPSRLDTFLKGIEEERDYYKKELERLQHIIQRRSCSTSYSAREKSSIFRTPEKGDYNSEIHQITRERDELQRMLERFEK 160
Cdd:PRK03918 235 ELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEK 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 161 YMEDIQSNVKLLTAERDKLSvlynEAQEELSALRKESTQTTAPHNIVslmeKEKELALSDLRRIMAEKEALREKLEHIEE 240
Cdd:PRK03918 315 RLSRLEEEINGIEERIKELE----EKEERLEELKKKLKELEKRLEEL----EERHELYEEAKAKKEELERLKKRLTGLTP 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 241 VSLFGK-SELEKTIEHLTCVNHQLESEKYELKSKVLIMKETIESLEnklkvqaqkfshvagdSSHQKTEVNSLRIVNEQL 319
Cdd:PRK03918 387 EKLEKElEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELK----------------KAKGKCPVCGRELTEEHR 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 320 QRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNlKMTSQDEEAHVMKKTIGVIDKEKDFLQETVDEKTEKIANLQEN 399
Cdd:PRK03918 451 KELLEEYTAELKRIEKELKEIEEKERKLRKELRELE-KVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEK 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 400 LANKEKAVAQMKIMISECESSVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSreiAFKENRRLQDDLATMAREnqe 479
Cdd:PRK03918 530 LKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFE---SVEELEERLKELEPFYNE--- 603
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 480 iSLELEAAVQEKEEMKSRVHKYITEVSrweslmaAKEKENQDLLDRFQMLHNRAEDWEVKAHQAEGEssSVRLELLSIDT 559
Cdd:PRK03918 604 -YLELKDAEKELEREEKELKKLEEELD-------KAFEELAETEKRLEELRKELEELEKKYSEEEYE--ELREEYLELSR 673
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 530376879 560 ERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSRLE 600
Cdd:PRK03918 674 ELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELE 714
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
422-758 |
6.78e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.59 E-value: 6.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 422 NQLKETLVNRDR---EINSLRRQLDAAHKELDEVGRSREIAfKENRRLQDDLATmarenqeisLELEAAVQEKEEMKSRV 498
Cdd:TIGR02168 179 RKLERTRENLDRledILNELERQLKSLERQAEKAERYKELK-AELRELELALLV---------LRLEELREELEELQEEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 499 HKYITEVSRWESLMAAKEKENQDLLDRFQMLHNRAEDWEVKAHQAEGESSSVRLELLSIDTERRHLRERVELLEKEIQEH 578
Cdd:TIGR02168 249 KEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEEL 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 579 inahhayESQISSMAKAMSRLEEELRHQEDEKATVLNDLSSLRELcikldsgkdimTQQLNSKNLEFErvvVELENVKSE 658
Cdd:TIGR02168 329 -------ESKLDELAEELAELEEKLEELKEELESLEAELEELEAE-----------LEELESRLEELE---EQLETLRSK 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 659 SDLLKKQLSNERHTVKNLESLLatnrdkefhSHLTSHEKDTEIQLLKEKLTLSESKLTSQSRENTMLRAKVAQLQTDYDA 738
Cdd:TIGR02168 388 VAQLELQIASLNNEIERLEARL---------ERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELER 458
|
330 340
....*....|....*....|
gi 530376879 739 LKRQISTERYERERAIQEMR 758
Cdd:TIGR02168 459 LEEALEELREELEEAEQALD 478
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1-537 |
6.84e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.57 E-value: 6.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 1 MQDLEETMAKLQLELNLCQKEKERLSDELlvkSDLETVVHQLEQEKqrlskkvesfavTERQLTLEVERMRLEHGIKRRD 80
Cdd:PRK02224 253 LETLEAEIEDLRETIAETEREREELAEEV---RDLRERLEELEEER------------DDLLAEAGLDDADAEAVEARRE 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 81 RSPSRLDTFLKGIEEER---DYYKKELERLQHIIQRRScSTSYSAREKSsifrtpekGDYNSEIHQITRERDELQRMLER 157
Cdd:PRK02224 318 ELEDRDEELRDRLEECRvaaQAHNEEAESLREDADDLE-ERAEELREEA--------AELESELEEAREAVEDRREEIEE 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 158 FEKYMEDIQSNVKLLTAERDKLSVLYNEAQEELSALRKEstqttaphnivslmEKEKELALSDLRRIMAEKEALREKLEH 237
Cdd:PRK02224 389 LEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRER--------------EAELEATLRTARERVEEAEALLEAGKC 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 238 IEEVSLFGKSELEKTIEhltcvnhQLESEKYELKSKVLIMKETIESLENKLKvqaqkfshVAGDSSHQKTEVNSLRIVNE 317
Cdd:PRK02224 455 PECGQPVEGSPHVETIE-------EDRERVEELEAELEDLEEEVEEVEERLE--------RAEDLVEAEDRIERLEERRE 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 318 QLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNLKMTSQDEEAHVMKKTIGVIDKEkdflQETVDEKTEKIANLQ 397
Cdd:PRK02224 520 DLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSK----LAELKERIESLERIR 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 398 ENLAnkekavaqmkiMISECESSVNQLKETLVNRDrEINSLRRQldaAHKELDEVGRSREIAFKENR--RLQDDLATMAR 475
Cdd:PRK02224 596 TLLA-----------AIADAEDEIERLREKREALA-ELNDERRE---RLAEKRERKRELEAEFDEARieEAREDKERAEE 660
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 530376879 476 ENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLmAAKEKENQDLLDRFQMLHNRAEDWE 537
Cdd:PRK02224 661 YLEQVEEKLDELREERDDLQAEIGAVENELEELEEL-RERREALENRVEALEALYDEAEELE 721
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
269-487 |
1.12e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 1.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 269 ELKSKVLIMKETIESLEnKLKVQAQKFSHVAGDSSHQKTEVNSLRIvnEQLQRSVDDYQHRLSIKRGELESAQAQIKILE 348
Cdd:COG4913 239 RAHEALEDAREQIELLE-PIRELAERYAAARERLAELEYLRAALRL--WFAQRRLELLEAELEELRAELARLEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 349 EKIDELnlkmTSQDEEAHVMKKTIGVIDKEKdfLQETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKETL 428
Cdd:COG4913 316 ARLDAL----REELDELEAQIRGNGGDRLEQ--LEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEA 389
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 530376879 429 vnrDREINSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEAA 487
Cdd:COG4913 390 ---AALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLAL 445
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1-429 |
1.39e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.49 E-value: 1.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 1 MQDLEETMAKLQLELNLCQKEKERLSDELLVKSdleTVVHQLEQEKQRLSKKVESFAVTERQLTLEVERM--RLEHGIKR 78
Cdd:pfam15921 379 LQKLLADLHKREKELSLEKEQNKRLWDRDTGNS---ITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQmeRQMAAIQG 455
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 79 RDRSPSRLDTFLKGIEEERDYYKKELERLQ------HIIQRRSCSTSYSAREKSSIFRTPekgdyNSEIHQITRERD--- 149
Cdd:pfam15921 456 KNESLEKVSSLTAQLESTKEMLRKVVEELTakkmtlESSERTVSDLTASLQEKERAIEAT-----NAEITKLRSRVDlkl 530
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 150 -ELQRmLERFEKYMEDIQSN---VKLLTAERDKLSVLYNEAQEELSALRKESTQTTAPHNI-VSLMEKE---KELALSDL 221
Cdd:pfam15921 531 qELQH-LKNEGDHLRNVQTEceaLKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVeKAQLEKEindRRLELQEF 609
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 222 RRIMAEKEALREKLE------HIEEVSLFG------------KSELEKTIEHLTCVNHQLE--SEKYE-LKSKVLIMKET 280
Cdd:pfam15921 610 KILKDKKDAKIRELEarvsdlELEKVKLVNagserlravkdiKQERDQLLNEVKTSRNELNslSEDYEvLKRNFRNKSEE 689
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 281 IESLENKLKVQAQKfshVAGDSSHQKTEVNSLRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNLKMTS 360
Cdd:pfam15921 690 METTTNKLKMQLKS---AQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHF 766
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 530376879 361 QDEEAHVMKKTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKETLV 429
Cdd:pfam15921 767 LKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESV 835
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
177-687 |
1.70e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.05 E-value: 1.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 177 DKLSVLYNEAQEELSALRKESTQTTAPHNIVSLMEKEKELALSDLRRIMAEKEALREKLEHIEEVslfgKSELEKTIEHL 256
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKE----VKELEELKEEI 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 257 TCVNHQLESEKYELKSKVLIMKETIESLEnKLKVQAQKFSHVAGDSSHQKTEVNSLRIVNEQLQRSVD---DYQHRLSIK 333
Cdd:PRK03918 241 EELEKELESLEGSKRKLEEKIRELEERIE-ELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDelrEIEKRLSRL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 334 RGELESAQAQIKILEEKIDELN-----------------------------------LKMTSQDEEAHVMKKTIGVIDKE 378
Cdd:PRK03918 320 EEEINGIEERIKELEEKEERLEelkkklkelekrleeleerhelyeeakakkeelerLKKRLTGLTPEKLEKELEELEKA 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 379 KDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMISEC-----ESSVNQLKETLVNRDREINSLRRQL---DAAHKELD 450
Cdd:PRK03918 400 KEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCpvcgrELTEEHRKELLEEYTAELKRIEKELkeiEEKERKLR 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 451 EVGRSREIAFKENRRLQ------DDLATMARENQEISLE-LEAAVQEKEEMKSRVHKYITEVSRWEslmaakekenqDLL 523
Cdd:PRK03918 480 KELRELEKVLKKESELIklkelaEQLKELEEKLKKYNLEeLEKKAEEYEKLKEKLIKLKGEIKSLK-----------KEL 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 524 DRFQMLHNRAEDWEVKAHQAEGESSSVRLELLSIDTER-RHLRERVELLEKEIQEHINAHHAyESQISSMAKAMSRLEEE 602
Cdd:PRK03918 549 EKLEELKKKLAELEKKLDELEEELAELLKELEELGFESvEELEERLKELEPFYNEYLELKDA-EKELEREEKELKKLEEE 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 603 LRHQEDEKATVLNDLSSLRELCIKLdsGKDIMTQQLNSKNLEFERVVVELENVKSESDLLKKQLSNERHTVKNLESLLAT 682
Cdd:PRK03918 628 LDKAFEELAETEKRLEELRKELEEL--EKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEE 705
|
....*
gi 530376879 683 NRDKE 687
Cdd:PRK03918 706 REKAK 710
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
339-525 |
1.98e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.44 E-value: 1.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 339 SAQAQIKILEEKIDELNLKMTSQDEEAHVMKKTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMISE-- 416
Cdd:COG3883 13 FADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEra 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 417 --------CESSVNQLKE-----TLVNRdreINSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMARENQEISLE 483
Cdd:COG3883 93 ralyrsggSVSYLDVLLGsesfsDFLDR---LSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAA 169
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 530376879 484 LEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENQDLLDR 525
Cdd:COG3883 170 KAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
178-760 |
3.01e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 44.33 E-value: 3.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 178 KLSVLYNEAQEELSALRKESTQTTAPHNIVSLMEKEKELALSDLRRIMAEKealREKLEHIEEVSLFGKSELEKTIEHlt 257
Cdd:pfam05483 216 KLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEES---RDKANQLEEKTKLQDENLKELIEK-- 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 258 cvNHQLESEKYELKSKVLIMKETIESLENKLKVQAQKFSHVAGDSSHQKTEVNSLR----IVNEQLQRSVDDYQHRLSIK 333
Cdd:pfam05483 291 --KDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKaahsFVVTEFEATTCSLEELLRTE 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 334 RGELESAQAQIKILEEKIDelnlKMTSQDEEAHVMKKTigvidkekdflQETVDEKTEKIANLQENLANKEKavaQMKIM 413
Cdd:pfam05483 369 QQRLEKNEDQLKIITMELQ----KKSSELEEMTKFKNN-----------KEVELEELKKILAEDEKLLDEKK---QFEKI 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 414 ISECESSVNQLKETLVNRDREINSLRRQLDAAH-------KELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEA 486
Cdd:pfam05483 431 AEELKGKEQELIFLLQAREKEIHDLEIQLTAIKtseehylKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASD 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 487 AVQEKEEMKSRVHKYITEVSRWESLMAAKEKENQDLLDRFQM----LHNRAEDWEVKAHQAEGESSSVRLELLSIDTERR 562
Cdd:pfam05483 511 MTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESvreeFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMK 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 563 HLRERVELLEKEIQEHINAHHAYESQISSMAKAMSRLEEELRHQEDEKATVLNDLSSLRElciKLDSGKDIMTQQLNSKN 642
Cdd:pfam05483 591 ILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQ---KFEEIIDNYQKEIEDKK 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 643 LEFERVVVELENVKSESD----LLKKQLSNERHTVKNLESLLATNRdkefhshltsHEKDTEIQLLKEKLTLSESKLTSQ 718
Cdd:pfam05483 668 ISEEKLLEEVEKAKAIADeavkLQKEIDKRCQHKIAEMVALMEKHK----------HQYDKIIEERDSELGLYKNKEQEQ 737
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 530376879 719 SRENTMLRAKVAQLQTDYDALKRQISTERYERERAIQEMRRH 760
Cdd:pfam05483 738 SSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKEN 779
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
336-554 |
4.09e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 4.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 336 ELESAQAQIKILEEKIDELNLKMTSQdeeahvmKKTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMIS 415
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAAL-------KKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 416 ECESSVNQLKETLVNRDREINSLRRQLDAAH----KELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEAAVQEK 491
Cdd:COG4942 94 ELRAELEAQKEELAELLRALYRLGRQPPLALllspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 530376879 492 EEMKSRVHKYITEVSRWESLMAAKEKENQDLLDRFQMLHNRAEDWEVKAHQAEGESSSVRLEL 554
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
129-398 |
4.09e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 43.76 E-value: 4.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 129 FRTPEKGDYNSEIHQITRERDELQRMLERFEKYMEDIQSNVKLL-TAERDKLSVLYNEAQEELSALRKEstqttaphnIV 207
Cdd:PRK05771 33 IEDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKkKVSVKSLEELIKDVEEELEKIEKE---------IK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 208 SLMEKEKELAlSDLRRIMAEKEALrEKLEHIE-EVSLFGKSELEKTIEHLtcVNHQLESEKYELKSKVLImkETIESLEN 286
Cdd:PRK05771 104 ELEEEISELE-NEIKELEQEIERL-EPWGNFDlDLSLLLGFKYVSVFVGT--VPEDKLEELKLESDVENV--EYISTDKG 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 287 K-------LKVQAQKFSHVAGDSSHQKTEVNSLRIVNEQLQRsvddYQHRLSIKRGELESAQAQIKILEEKIDELNL--- 356
Cdd:PRK05771 178 YvyvvvvvLKELSDEVEEELKKLGFERLELEEEGTPSELIRE----IKEELEEIEKERESLLEELKELAKKYLEELLaly 253
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 530376879 357 -KMTSQDEEAHVMKKTIG----------VIDKEKDFLQETVDEKTEKIANLQE 398
Cdd:PRK05771 254 eYLEIELERAEALSKFLKtdktfaiegwVPEDRVKKLKELIDKATGGSAYVEF 306
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
84-572 |
6.71e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.11 E-value: 6.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 84 SRLDTFLKGIEEERDYYKKELERLQHIIQRRSCSTSYSAREKSSIFRTPEKgdynseIHQITRERDEL-------QRMLE 156
Cdd:PRK02224 216 AELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRET------IAETEREREELaeevrdlRERLE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 157 RFEKYMEDIQSNVKL-------LTAERDKLSVLYNEAQEEL-----SALRKESTQTTAPHNIVSLMEKEKEL-------- 216
Cdd:PRK02224 290 ELEEERDDLLAEAGLddadaeaVEARREELEDRDEELRDRLeecrvAAQAHNEEAESLREDADDLEERAEELreeaaele 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 217 -----ALSDLRRIMAEKEALREKLEHIEEVSLFGKSELEKTIEHLtcvnHQLESEKYELKSKVLIMKETIESLENKLKVQ 291
Cdd:PRK02224 370 seleeAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFL----EELREERDELREREAELEATLRTARERVEEA 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 292 AQKFShvAGDSSHQKTEVNSLRIVNeqlqrSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNlKMTSQDEEAHVMKKT 371
Cdd:PRK02224 446 EALLE--AGKCPECGQPVEGSPHVE-----TIEEDRERVEELEAELEDLEEEVEEVEERLERAE-DLVEAEDRIERLEER 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 372 IGVIDKEKDFLQETVDEKTEKIANLQENLAN-------KEKAVAQMKIMISECESSVNQLKETLVNRDREINSLRR---Q 441
Cdd:PRK02224 518 REDLEELIAERRETIEEKRERAEELRERAAEleaeaeeKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERirtL 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 442 LDAAHKELDEVGRSRE----IAFKENRRlQDDLATMARENQEISLEL-EAAVQEKEEMKSRVHKYITEVsrwESLMAAKE 516
Cdd:PRK02224 598 LAAIADAEDEIERLREkreaLAELNDER-RERLAEKRERKRELEAEFdEARIEEAREDKERAEEYLEQV---EEKLDELR 673
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 530376879 517 KENQDLLDRFQMLHNRAEdwevkahqaegesssvrlELLSIDTERRHLRERVELLE 572
Cdd:PRK02224 674 EERDDLQAEIGAVENELE------------------ELEELRERREALENRVEALE 711
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
312-761 |
1.36e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.52 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 312 LRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKILE------------------EKIDELNLKMTSQDEEAHVMKKTIG 373
Cdd:pfam12128 292 LRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEdqhgafldadietaaadqEQLPSWQSELENLEERLKALTGKHQ 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 374 VIDKEKDFLQETVDEK-TEKIANLQENLAN-KEKAVAQMKIMISECESSVNQLKETLVNRDREINSLRRQLDAAHKEL-- 449
Cdd:pfam12128 372 DVTAKYNRRRSKIKEQnNRDIAGIKDKLAKiREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELkl 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 450 -------------------DEVGRSREI---AFKENRRLQDDLATM--ARENQEISL--------ELEAAVQEKEEM--- 494
Cdd:pfam12128 452 rlnqatatpelllqlenfdERIERAREEqeaANAEVERLQSELRQArkRRDQASEALrqasrrleERQSALDELELQlfp 531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 495 --KSRVHKYITEVSRWESLMAakekenqDLLDRfQMLHNRAEDWEVKAHQAEGESS--SVRLELLSIDTERRH-----LR 565
Cdd:pfam12128 532 qaGTLLHFLRKEAPDWEQSIG-------KVISP-ELLHRTDLDPEVWDGSVGGELNlyGVKLDLKRIDVPEWAaseeeLR 603
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 566 ERVELLEKEIQEHINAHHAYESQissMAKAMSRLEEELRHQEDEKATVLNDLSSLRELCIKLDSGKDIMTQQLNSknlEF 645
Cdd:pfam12128 604 ERLDKAEEALQSAREKQAAAEEQ---LVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAE---RK 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 646 ERVVVELENVKSESDLLKKQLSNERHTVKNlESLLATNRDKEFHSHLTSHEKDTEIQLLKEKLTLSESKLTSQSRENTML 725
Cdd:pfam12128 678 DSANERLNSLEAQLKQLDKKHQAWLEEQKE-QKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALETWY 756
|
490 500 510
....*....|....*....|....*....|....*.
gi 530376879 726 RAKVAQLQTDYDALKRqISTERYERERAIQEMRRHG 761
Cdd:pfam12128 757 KRDLASLGVDPDVIAK-LKREIRTLERKIERIAVRR 791
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
305-490 |
1.49e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.74 E-value: 1.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 305 QKTEVNSLRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNLKMTSQDEE-----------AHVMKKTIG 373
Cdd:COG3883 21 KQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEieerreelgerARALYRSGG 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 374 VIDKE---------KDFL-------------QETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKETLVNR 431
Cdd:COG3883 101 SVSYLdvllgsesfSDFLdrlsalskiadadADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQ 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 530376879 432 DREINSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEAAVQE 490
Cdd:COG3883 181 EALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 239
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
270-483 |
1.90e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.54 E-value: 1.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 270 LKSKVLIMKETIESLENKLkvqaqkfSHVAGDSSHQKTEVNSLRIVNEQlqrSVDDYQHRLSIKRGELESAQAQIKILEE 349
Cdd:PHA02562 172 NKDKIRELNQQIQTLDMKI-------DHIQQQIKTYNKNIEEQRKKNGE---NIARKQNKYDELVEEAKTIKAEIEELTD 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 350 KIdeLNLKMTSQDEEAHV---------MKKTIGVIDKEKDFLQE---------TVDEKTEKIANLQENLANKEKAVAQMK 411
Cdd:PHA02562 242 EL--LNLVMDIEDPSAALnklntaaakIKSKIEQFQKVIKMYEKggvcptctqQISEGPDRITKIKDKLKELQHSLEKLD 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 412 IMISECESSVNQ----------LKETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMARENQEIS 481
Cdd:PHA02562 320 TAIDELEEIMDEfneqskklleLKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELV 399
|
..
gi 530376879 482 LE 483
Cdd:PHA02562 400 KE 401
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
177-668 |
2.09e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.64 E-value: 2.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 177 DKLSVLYNEAQEELSALRKEST----QTTAPHNI-VSLMEKEKELALSDLRRIMAEKEALREKLEHIEEVSLFGKSELEK 251
Cdd:pfam15921 245 DQLEALKSESQNKIELLLQQHQdrieQLISEHEVeITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLES 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 252 TIEHLtcvnhqleseKYELKSKVLIMKETIESLENKL----------KVQAQKFSHVAGDSSHQKTEV--------NSLR 313
Cdd:pfam15921 325 TVSQL----------RSELREAKRMYEDKIEELEKQLvlanselteaRTERDQFSQESGNLDDQLQKLladlhkreKELS 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 314 IVNEQLQR----------SVDDYQHRLSIKRGELESAQAQIKILEE----KIDELNLKMTSQDEEAHVMKKTIGVIDKEK 379
Cdd:pfam15921 395 LEKEQNKRlwdrdtgnsiTIDHLRRELDDRNMEVQRLEALLKAMKSecqgQMERQMAAIQGKNESLEKVSSLTAQLESTK 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 380 DFLQETVDEKTEK----------IANLQENLANKEKAVAQMKIMISECESSVN------------------------QLK 425
Cdd:pfam15921 475 EMLRKVVEELTAKkmtlessertVSDLTASLQEKERAIEATNAEITKLRSRVDlklqelqhlknegdhlrnvqteceALK 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 426 ETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEV 505
Cdd:pfam15921 555 LQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEK 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 506 SRW-----ESLMAAKE--KENQDLLDRFQM----LHNRAEDWEV-------KAHQAEGESSSVRLELLSIDTERRHLRER 567
Cdd:pfam15921 635 VKLvnagsERLRAVKDikQERDQLLNEVKTsrneLNSLSEDYEVlkrnfrnKSEEMETTTNKLKMQLKSAQSELEQTRNT 714
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 568 VELLEKE----------IQEHINAHH----AYESQISSMAKAMSRLEEELRHQEDEKATvlndlsslrelcikldsgkdi 633
Cdd:pfam15921 715 LKSMEGSdghamkvamgMQKQITAKRgqidALQSKIQFLEEAMTNANKEKHFLKEEKNK--------------------- 773
|
570 580 590
....*....|....*....|....*....|....*
gi 530376879 634 MTQQLNSKNLEFERVVVELENVKSESDLLKKQLSN 668
Cdd:pfam15921 774 LSQELSTVATEKNKMAGELEVLRSQERRLKEKVAN 808
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
227-756 |
2.10e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.67 E-value: 2.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 227 EKEALR-EKLEHIEEVSLFGKSELEKTIEHLTCVNHQLESEKYELKSKVLIMK--ETIESLENKLKVQAQKFSHVAGDSS 303
Cdd:PTZ00121 1239 AEEAKKaEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKadEAKKAEEKKKADEAKKKAEEAKKAD 1318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 304 HQKTEVNSLRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNLKMTSQDEEAHVMKKTIGVIdKEKDFLQ 383
Cdd:PTZ00121 1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEK-KKADEAK 1397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 384 ETVDEKTEKIANLQENLANKEKA-----VAQMKIMISECESSVNQLKETlvNRDREINSLRRQLDAAHKELDEVGRSREI 458
Cdd:PTZ00121 1398 KKAEEDKKKADELKKAAAAKKKAdeakkKAEEKKKADEAKKKAEEAKKA--DEAKKKAEEAKKAEEAKKKAEEAKKADEA 1475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 459 AFK-ENRRLQDDLATMARENQEISLELEAAVQEK----------EEMKSRVHKYITEVSRWESLMAAKEKENQDLLDRFQ 527
Cdd:PTZ00121 1476 KKKaEEAKKADEAKKKAEEAKKKADEAKKAAEAKkkadeakkaeEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAE 1555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 528 MLHNRAEDWEVKAHQAEGESSSVRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSRLEEELRHQE 607
Cdd:PTZ00121 1556 ELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKV 1635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 608 DEKATVLNDLSSLRELCIKLDSGKDIMTQQLNSKNLEFERVVVELENVKSESDLLKKQLSNERHTVKNLESLLATN-RDK 686
Cdd:PTZ00121 1636 EQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEaEEK 1715
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 530376879 687 EFHSHLTSHEKDTEIQLLKEKLTLSESKLTS-QSRENTMLRAKVAQLQTDYDALKRQIsteRYERERAIQE 756
Cdd:PTZ00121 1716 KKAEELKKAEEENKIKAEEAKKEAEEDKKKAeEAKKDEEEKKKIAHLKKEEEKKAEEI---RKEKEAVIEE 1783
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
175-684 |
2.15e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 41.73 E-value: 2.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 175 ERDKLSVLYNEAQEELSALRKESTQTTAPHNIVSLmekeKELALSDLRRIMAEKEALREKLEHIEEVSLFGKSELEKTIE 254
Cdd:pfam10174 203 QKEKENIHLREELHRRNQLQPDPAKTKALQTVIEM----KDTKISSLERNIRDLEDEVQMLKTNGLLHTEDREEEIKQME 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 255 HLTCVNHQLESEKYELKSKVLIMKETIESLENKLKVQAQKFSHVAGDSSHQKTEVNSLRIVNEQLQRSVDDYQHRLSIKR 334
Cdd:pfam10174 279 VYKSHSKFMKNKIDQLKQELSKKESELLALQTKLETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKE 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 335 GELESAQAQIKILEEKIDELNLKMTSQDEEAHVMKKTIGVIDKEKDFLQETVDEKTEKIANLQEnlankekAVAQMKIMI 414
Cdd:pfam10174 359 SFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKE-------RVKSLQTDS 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 415 SECESSVNQLKETLVNRDREINSLRRQLDAAHKE-LDEVGRSReiafKENRRLQDDLATMARENQEISLELEAAVQEKEE 493
Cdd:pfam10174 432 SNTDTALTTLEEALSEKERIIERLKEQREREDRErLEELESLK----KENKDLKEKVSALQPELTEKESSLIDLKEHASS 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 494 MKSRVHKYITEVSRWESLMAAKEKENQDLLDRFQMLHNRAEDWEVKAHQAEgesssvRLELLSIDTERRhlRERVELLEK 573
Cdd:pfam10174 508 LASSGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAHNAEEAVRTNPEIND------RIRLLEQEVARY--KEESGKAQA 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 574 EIQEHINAHHAYESQISSMAKAMSRLEEELRHQEDEKATVLNDLSSLRELCIK------LDSGKDIMTQQLNSKNLEFER 647
Cdd:pfam10174 580 EVERLLGILREVENEKNDKDKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKkgaqllEEARRREDNLADNSQQLQLEE 659
|
490 500 510
....*....|....*....|....*....|....*..
gi 530376879 648 VVVELENVKSESDLLKKQLSNERHTVKNLESLLATNR 684
Cdd:pfam10174 660 LMGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLR 696
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
513-774 |
3.18e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 3.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 513 AAKEKENQDLLDRFQMLHNRAEDWEVKAHQAEGESSSVRLELLSIDTERRHLRERVELLEKEIQEHinahhayESQISSM 592
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAAL-------EAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 593 AKAMSRLEEELRHQEDEKATVLNDLSSLrelcikldSGKDIMTQQLNSKNleFERVVVELENVKSESDLLKKQLSNERHT 672
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLRALYRL--------GRQPPLALLLSPED--FLDAVRRLQYLKYLAPARREQAEELRAD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 673 VKNLESLLATNRDKEFHSHLTSHEKDTEIQLLKEKLTLSESKLTSQSRENTMLRAKVAQLQTDYDALKRQIstERYERER 752
Cdd:COG4942 159 LAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALI--ARLEAEA 236
|
250 260
....*....|....*....|..
gi 530376879 753 AIQEMRRHGLATPPLSSTLRSP 774
Cdd:COG4942 237 AAAAERTPAAGFAALKGKLPWP 258
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
347-466 |
4.95e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 40.23 E-value: 4.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 347 LEEKIDELNLKMtsQDEEAHVMKKTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLK- 425
Cdd:COG2433 378 IEEALEELIEKE--LPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARs 455
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 530376879 426 --ETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKENRRL 466
Cdd:COG2433 456 eeRREIRKDREISRLDREIERLERELEEERERIEELKRKLERL 498
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
136-759 |
5.24e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 40.27 E-value: 5.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 136 DYNSEIHQITRERDELQRM---LERFEKYMEDIQSNVKLLTAERDKLSVLYNEAQEELSALRKEStqttapHNIVSLMEK 212
Cdd:PRK01156 177 MLRAEISNIDYLEEKLKSSnleLENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSAL------NELSSLEDM 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 213 EKELAlSDLRRIMAEKEALREKLEHIEEVSlfgkSELEKTIEHLTCVNHQLESEKYELKSKVLIMKETIESlenkLKVQA 292
Cdd:PRK01156 251 KNRYE-SEIKTAESDLSMELEKNNYYKELE----ERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSN----IDAEI 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 293 QKFshvagDSSHQKTEV-NSLRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKILEekidelNLKMTSQDEEAHvmkkt 371
Cdd:PRK01156 322 NKY-----HAIIKKLSVlQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIE------SLKKKIEEYSKN----- 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 372 igvIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKETLVNRDREINSLRRQ----LDAAHK 447
Cdd:PRK01156 386 ---IERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQsvcpVCGTTL 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 448 ELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEAAVQEKEEM-KSRVHKYITEVSRWESLMAAKEKENQDLldrf 526
Cdd:PRK01156 463 GEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLeSEEINKSINEYNKIESARADLEDIKIKI---- 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 527 qmlhNRAEDWEVKAHQAEGESSSVRLELLSidterrhlrervellekeiqehinahHAYESQISSMAKAMSRLEEELRHQ 606
Cdd:PRK01156 539 ----NELKDKHDKYEEIKNRYKSLKLEDLD--------------------------SKRTSWLNALAVISLIDIETNRSR 588
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 607 EDEKATVLNDL-SSLRELCIKLDSGKDIMTQQLNsknlEFERVVVELENVKSESDLLKKQLSNERHTVKNLESLLATNRD 685
Cdd:PRK01156 589 SNEIKKQLNDLeSRLQEIEIGFPDDKSYIDKSIR----EIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDS 664
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 530376879 686 KEfhshLTSHEKDTEIQLLKEKLTLSESKLTSQSRENTMLRAKVAQLQTDYDALKRQISteryERERAIQEMRR 759
Cdd:PRK01156 665 II----PDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRIN----DINETLESMKK 730
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1-622 |
6.77e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.05 E-value: 6.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 1 MQDLEETMAKLQLELNLCQKEKERLSDELlvksdletvvhqleQEKQRLSKKVESfAVTERQLTLEVERMRLEHGIKRRD 80
Cdd:TIGR02169 317 LEDAEERLAKLEAEIDKLLAEIEELEREI--------------EEERKRRDKLTE-EYAELKEELEDLRAELEEVDKEFA 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 81 RSPSRLDTFLKGIE---EERDYYKKELERLQHIIQRRSCSTSY------SAREKSSIFRTpEKGDYNSEIHQITRERDEL 151
Cdd:TIGR02169 382 ETRDELKDYREKLEklkREINELKRELDRLQEELQRLSEELADlnaaiaGIEAKINELEE-EKEDKALEIKKQEWKLEQL 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 152 QRMLERFEKYMEDIQSNVKLLTAERDKLSVLYNEAQEELSALRKESTQTTAP-----------HNIVSLMEKEKE----- 215
Cdd:TIGR02169 461 AADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVeevlkasiqgvHGTVAQLGSVGEryata 540
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 216 -------------------------------------LALSDLRRIMAEKEALREK------------------------ 234
Cdd:TIGR02169 541 ievaagnrlnnvvveddavakeaiellkrrkagratfLPLNKMRDERRDLSILSEDgvigfavdlvefdpkyepafkyvf 620
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 235 -----LEHIEE----------VSLFGKSeLEKT--IEHLTCVNHQLESEKYELKSKVLIMKETIESLENKLKVQAQKFsh 297
Cdd:TIGR02169 621 gdtlvVEDIEAarrlmgkyrmVTLEGEL-FEKSgaMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSEL-- 697
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 298 vagdsSHQKTEVNSLRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNLKMTSQDEeahvmkktigvidk 377
Cdd:TIGR02169 698 -----RRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKS-------------- 758
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 378 EKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSvnQLKEtlvnrdrEINSLRRQLDAAHKELDEVGRSRE 457
Cdd:TIGR02169 759 ELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELS--KLEE-------EVSRIEARLREIEQKLNRLTLEKE 829
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 458 IAFKENRRLQDDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENQDLLDRFQMLHNRAEDWE 537
Cdd:TIGR02169 830 YLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELE 909
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 538 VKAHQAEgESSSVRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSRLEEELRHQEDEKATVLNDL 617
Cdd:TIGR02169 910 AQIEKKR-KRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRL 988
|
....*
gi 530376879 618 SSLRE 622
Cdd:TIGR02169 989 DELKE 993
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
95-340 |
8.06e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.36 E-value: 8.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 95 EERDYYKKELERLQHIIQRRSCSTSYSAREKSSIfrtpekgdyNSEIHQITRERDELQRMLERFEKYMEDIQSNVKLLTA 174
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKAL---------LKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 175 ERDKLSVLYNEAQEELSALRKESTQTTAPHNIVSLMEKEKELALsdLRRIMAEKEALREKLEHIEEvslfgkseLEKTIE 254
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDA--VRRLQYLKYLAPARREQAEE--------LRADLA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530376879 255 HLTCVNHQLESEKYELKSKVLIMKETIESLENKLKVQAQKFSHVAGDSSHQKTEVNSLRIVNEQLQRSVDDYQHRLSIKR 334
Cdd:COG4942 161 ELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
....*.
gi 530376879 335 GELESA 340
Cdd:COG4942 241 ERTPAA 246
|
|
| |
