|
Name |
Accession |
Description |
Interval |
E-value |
| ACE1-Sec16-like |
cd09233 |
Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16; COPII coat ... |
1500-1862 |
3.49e-126 |
|
Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16; COPII coat complex plays an important role in vesicular traffic of newly synthezised proteins from the endoplasmatic reticulum (ER) to the Golgi apparatus by mediating the formation of transport vesicles. COPII consists of an outer coat, made up of the scaffold proteins Sec31 and Sec13, and the cargo adaptor complex, Sec23 and Sec24, which are recruited by the small GTPase Sar1. Sec16 is involved in the early steps of the assembly process. Sec16 forms elongated heterotetramers with Sec13, Sec13-(Sec16)2-Sec13. It interacts with Sec13 by insertion of a single beta-blade to close the six-bladded beta propeller of Sec13. In the same way Sec13 interacts with Sec31 and Nup145C, a nuclear pore protein, all of these contain a structurally related ancestral coatomer element 1 (ACE1). Sec16 is believed to be a key component in maintaining the integrity of the ER exit site.
:
Pssm-ID: 187750 [Multi-domain] Cd Length: 314 Bit Score: 399.71 E-value: 3.49e-126
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 1500 FPGPLGKDDTHKVDVINFAQNKATKCLQNESLIDKESASLLWNFIILLCRQNGTVVGTDIAElllrdhrtvwlpgkspne 1579
Cdd:cd09233 1 FPGPLIKGKTKKKDVLKWLEEKIAELEENEGYLDLEDKLLLWKLLKLLVRQNGKLVGTDIAE------------------ 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 1580 anlidftneaveqveeeesgeaqlsfltdsqtvtssvlEKETERFRELLLYGRKKDALESAMKNGLWGHALLLASKMDSR 1659
Cdd:cd09233 63 --------------------------------------QKALNRFRNLLLTGNRKEALELALDNGLWAHALLLASSLGKE 104
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 1660 THARVMTRFANSL-PINDPLQTVYQLMSGRMPAASTCCGDE------KWGDWRPHLAMVLSNLNNNMDVEsrTMATMGDT 1732
Cdd:cd09233 105 TWAEVVSRFARSEsKLNDPLQTLYQLFSGNSPEAITELADNpaeaewALGNWREHLAIILSNRTSNLDLE--ALVELGDL 182
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 1733 LASKGLLDAAHFCYLMAQVGFGVYTKKTTKLVLIGSNHSLPFLKFATNEAIQRTEAYEYAQSLGAHTCSLPNFQVFKFIY 1812
Cdd:cd09233 183 LAQRGLVEAAHICYLLAGVPLGPYPSSPSSCLLGGAVHNKSPRTFATPEAIQLTEIYEYALSLGNPQFGLPHLQPYKLIH 262
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 564339689 1813 LCRLAEMGLATQAFHYCEVIAKSV--LTQPTAYSPVLISQLIQMASQLRLFD 1862
Cdd:cd09233 263 AARLAELGLVSEALKYCEAIASSLksLTKSPYYDPNLLAQLQDLSERLSGTS 314
|
|
| PHA03247 super family |
cl33720 |
large tegument protein UL36; Provisional |
3-313 |
4.09e-06 |
|
large tegument protein UL36; Provisional
The actual alignment was detected with superfamily member PHA03247:
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 52.63 E-value: 4.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 3 PPPQAVPSGVAGPppaGNPRssfwansPYRKPANNNAPVAPiTRPLQPVTDPfafnrQTLQNTPVGSSSKSSPPNLPGPA 82
Cdd:PHA03247 2739 PAPPAVPAGPATP---GGPA-------RPARPPTTAGPPAP-APPAAPAAGP-----PRRLTRPAVASLSESRESLPSPW 2802
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 83 LPVFSQWPGLPVPPTNAGDSSTGLHEPlPGTLSQPRADPSLFPPASTPSSL-----PGLEVNR-------SAEVDSSSGP 150
Cdd:PHA03247 2803 DPADPPAAVLAPAAALPPAASPAGPLP-PPTSAQPTAPPPPPGPPPPSLPLggsvaPGGDVRRrppsrspAAKPAAPARP 2881
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 151 EVQMLPHPPHYIPGVGPEQPhgghlndsgagPDQSMNRHAPhdgavaHAASPFFPQPQMPGQWGPVhggPPPSYHHHSPC 230
Cdd:PHA03247 2882 PVRRLARPAVSRSTESFALP-----------PDQPERPPQP------QAPPPPQPQPQPPPPPQPQ---PPPPPPPRPQP 2941
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 231 LEGPVQDMGPQAASLPHFPSPSSLHEGPGhESRVPQTFTPASLASGEGneivhqqsknyPSSSFPPKHSfEQNSRVGNmW 310
Cdd:PHA03247 2942 PLAPTTDPAGAGEPSGAVPQPWLGALVPG-RVAVPRFRVPQPAPSREA-----------PASSTPPLTG-HSLSRVSS-W 3007
|
...
gi 564339689 311 ASA 313
Cdd:PHA03247 3008 ASS 3010
|
|
| PRK07003 super family |
cl35530 |
DNA polymerase III subunit gamma/tau; |
1987-2267 |
7.00e-03 |
|
DNA polymerase III subunit gamma/tau;
The actual alignment was detected with superfamily member PRK07003:
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 41.76 E-value: 7.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 1987 GPPGSVLGFPESSRSDPAVLHPGQALPPATPglqesgPPLQEARSPDPEMVPQGSPVRHSPPEPReeefgknVADLGSSR 2066
Cdd:PRK07003 371 GVPARVAGAVPAPGARAAAAVGASAVPAVTA------VTGAAGAALAPKAAAAAAATRAEAPPAA-------PAPPATAD 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 2067 TAQDSETSPVWDLGSSSLTRAPSLTPDSEGKKPAQAVKKEPKEPKKTeswfsrwlPGKKRTEAYLPDDKNKSivwdekkn 2146
Cdd:PRK07003 438 RGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDA--------PPDAAFEPAPRAAAPSA-------- 501
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 2147 qwVNLNEPEEEKKAPPPPPTSFPrVPQAAPTGPAGPPMASVNVFSRKAGGSRARyVDVLNPSG----TQRSEPALAPADF 2222
Cdd:PRK07003 502 --ATPAAVPDARAPAAASREDAP-AAAAPPAPEARPPTPAAAAPAARAGGAAAA-LDVLRNAGmrvsSDRGARAAAAAKP 577
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 564339689 2223 FAPLAPLPIPS----NLFVPNPDAEESQPADGTGCRGQAPAGTQSKAEP 2267
Cdd:PRK07003 578 AAAPAAAPKPAaprvAVQVPTPRARAATGDAPPNGAARAEQAAESRGAP 626
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ACE1-Sec16-like |
cd09233 |
Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16; COPII coat ... |
1500-1862 |
3.49e-126 |
|
Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16; COPII coat complex plays an important role in vesicular traffic of newly synthezised proteins from the endoplasmatic reticulum (ER) to the Golgi apparatus by mediating the formation of transport vesicles. COPII consists of an outer coat, made up of the scaffold proteins Sec31 and Sec13, and the cargo adaptor complex, Sec23 and Sec24, which are recruited by the small GTPase Sar1. Sec16 is involved in the early steps of the assembly process. Sec16 forms elongated heterotetramers with Sec13, Sec13-(Sec16)2-Sec13. It interacts with Sec13 by insertion of a single beta-blade to close the six-bladded beta propeller of Sec13. In the same way Sec13 interacts with Sec31 and Nup145C, a nuclear pore protein, all of these contain a structurally related ancestral coatomer element 1 (ACE1). Sec16 is believed to be a key component in maintaining the integrity of the ER exit site.
Pssm-ID: 187750 [Multi-domain] Cd Length: 314 Bit Score: 399.71 E-value: 3.49e-126
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 1500 FPGPLGKDDTHKVDVINFAQNKATKCLQNESLIDKESASLLWNFIILLCRQNGTVVGTDIAElllrdhrtvwlpgkspne 1579
Cdd:cd09233 1 FPGPLIKGKTKKKDVLKWLEEKIAELEENEGYLDLEDKLLLWKLLKLLVRQNGKLVGTDIAE------------------ 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 1580 anlidftneaveqveeeesgeaqlsfltdsqtvtssvlEKETERFRELLLYGRKKDALESAMKNGLWGHALLLASKMDSR 1659
Cdd:cd09233 63 --------------------------------------QKALNRFRNLLLTGNRKEALELALDNGLWAHALLLASSLGKE 104
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 1660 THARVMTRFANSL-PINDPLQTVYQLMSGRMPAASTCCGDE------KWGDWRPHLAMVLSNLNNNMDVEsrTMATMGDT 1732
Cdd:cd09233 105 TWAEVVSRFARSEsKLNDPLQTLYQLFSGNSPEAITELADNpaeaewALGNWREHLAIILSNRTSNLDLE--ALVELGDL 182
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 1733 LASKGLLDAAHFCYLMAQVGFGVYTKKTTKLVLIGSNHSLPFLKFATNEAIQRTEAYEYAQSLGAHTCSLPNFQVFKFIY 1812
Cdd:cd09233 183 LAQRGLVEAAHICYLLAGVPLGPYPSSPSSCLLGGAVHNKSPRTFATPEAIQLTEIYEYALSLGNPQFGLPHLQPYKLIH 262
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 564339689 1813 LCRLAEMGLATQAFHYCEVIAKSV--LTQPTAYSPVLISQLIQMASQLRLFD 1862
Cdd:cd09233 263 AARLAELGLVSEALKYCEAIASSLksLTKSPYYDPNLLAQLQDLSERLSGTS 314
|
|
| Sec16_C |
pfam12931 |
Sec23-binding domain of Sec16; Sec16 is a multi-domain vesicle coat protein. The C-terminal ... |
1625-1859 |
1.25e-44 |
|
Sec23-binding domain of Sec16; Sec16 is a multi-domain vesicle coat protein. The C-terminal region is the part that binds to Sec23, a COPII vesicle coat protein. This association is part of the transport vesicle coat structure.
Pssm-ID: 432884 Cd Length: 279 Bit Score: 163.89 E-value: 1.25e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 1625 RELLLYGRKKDALESAMKNGLWGHALLLASKMDSRTHARVMTRFA------NSLPINDPLQTVYQLMSGRMPAA----ST 1694
Cdd:pfam12931 2 RALLLTGDREKALWLALDKKLWAHALLIASTLGKEKWKEVVQEFVrsefkgSNNKSGESLAALYQVFAGNSEEAvdelVP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 1695 CCGDEKWG--DWRPHLAMVLSNLNNNmDVESRTmaTMGDTLASKGLLDAAHFCYLMAQVGFGVytkkttkLVLIGSNHSL 1772
Cdd:pfam12931 82 PSKNALWAldNWRETLALVLSNRSPG-DVEALL--ALGDLLAQYGRTEAAHICFLLAGLPLSQ-------TVLLGADHVR 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 1773 PFLKFATN-EAIQRTEAYEYAQSLGAH---TCSLPNFQVFKFIYLCRLAEMGLATQAFHYCEVIAKSV--LTQPTAY-SP 1845
Cdd:pfam12931 152 FPSTFGNDlESILLTEIYEYALSLSPPqppFVGLPHLLPYKLQHAAVLAEYGLVSEAQKYCDAITASLksLTKKSPYyHP 231
|
250
....*....|....
gi 564339689 1846 VLISQLIQMASQLR 1859
Cdd:pfam12931 232 TLLAQLEDLSNRLS 245
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
3-313 |
4.09e-06 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 52.63 E-value: 4.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 3 PPPQAVPSGVAGPppaGNPRssfwansPYRKPANNNAPVAPiTRPLQPVTDPfafnrQTLQNTPVGSSSKSSPPNLPGPA 82
Cdd:PHA03247 2739 PAPPAVPAGPATP---GGPA-------RPARPPTTAGPPAP-APPAAPAAGP-----PRRLTRPAVASLSESRESLPSPW 2802
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 83 LPVFSQWPGLPVPPTNAGDSSTGLHEPlPGTLSQPRADPSLFPPASTPSSL-----PGLEVNR-------SAEVDSSSGP 150
Cdd:PHA03247 2803 DPADPPAAVLAPAAALPPAASPAGPLP-PPTSAQPTAPPPPPGPPPPSLPLggsvaPGGDVRRrppsrspAAKPAAPARP 2881
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 151 EVQMLPHPPHYIPGVGPEQPhgghlndsgagPDQSMNRHAPhdgavaHAASPFFPQPQMPGQWGPVhggPPPSYHHHSPC 230
Cdd:PHA03247 2882 PVRRLARPAVSRSTESFALP-----------PDQPERPPQP------QAPPPPQPQPQPPPPPQPQ---PPPPPPPRPQP 2941
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 231 LEGPVQDMGPQAASLPHFPSPSSLHEGPGhESRVPQTFTPASLASGEGneivhqqsknyPSSSFPPKHSfEQNSRVGNmW 310
Cdd:PHA03247 2942 PLAPTTDPAGAGEPSGAVPQPWLGALVPG-RVAVPRFRVPQPAPSREA-----------PASSTPPLTG-HSLSRVSS-W 3007
|
...
gi 564339689 311 ASA 313
Cdd:PHA03247 3008 ASS 3010
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
57-286 |
9.94e-06 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 51.19 E-value: 9.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 57 FNRQtlQNTPVGSSSKSSPPNLPGPALPVFSQWPGLPVPPTNAGDSSTGLHEPLP---------GTLSQPRADPSLFP-P 126
Cdd:pfam09770 102 FNRQ--QPAARAAQSSAQPPASSLPQYQYASQQSQQPSKPVRTGYEKYKEPEPIPdlqvdaslwGVAPKKAAAPAPAPqP 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 127 ASTPSSLPG----------LEVNRSAEVDSSSGPEVQMLPHPPHYIPGVGPEQPHGGHLNDSGAGPDQSMNRHAPHDGAV 196
Cdd:pfam09770 180 AAQPASLPApsrkmmsleeVEAAMRAQAKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQ 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 197 AH---------AASPFFPQPQMPGQWGPVHGGPPPSYHHHSPCLEGPVQDMGPQAASLPHFPSPSslHEGPGHESRVPQt 267
Cdd:pfam09770 260 GHpvtilqrpqSPQPDPAQPSIQPQAQQFHQQPPPVPVQPTQILQNPNRLSAARVGYPQNPQPGV--QPAPAHQAHRQQ- 336
|
250
....*....|....*....
gi 564339689 268 ftpaSLASGEGNEIVHQQS 286
Cdd:pfam09770 337 ----GSFGRQAPIITHPQQ 351
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
1987-2267 |
7.00e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 41.76 E-value: 7.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 1987 GPPGSVLGFPESSRSDPAVLHPGQALPPATPglqesgPPLQEARSPDPEMVPQGSPVRHSPPEPReeefgknVADLGSSR 2066
Cdd:PRK07003 371 GVPARVAGAVPAPGARAAAAVGASAVPAVTA------VTGAAGAALAPKAAAAAAATRAEAPPAA-------PAPPATAD 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 2067 TAQDSETSPVWDLGSSSLTRAPSLTPDSEGKKPAQAVKKEPKEPKKTeswfsrwlPGKKRTEAYLPDDKNKSivwdekkn 2146
Cdd:PRK07003 438 RGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDA--------PPDAAFEPAPRAAAPSA-------- 501
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 2147 qwVNLNEPEEEKKAPPPPPTSFPrVPQAAPTGPAGPPMASVNVFSRKAGGSRARyVDVLNPSG----TQRSEPALAPADF 2222
Cdd:PRK07003 502 --ATPAAVPDARAPAAASREDAP-AAAAPPAPEARPPTPAAAAPAARAGGAAAA-LDVLRNAGmrvsSDRGARAAAAAKP 577
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 564339689 2223 FAPLAPLPIPS----NLFVPNPDAEESQPADGTGCRGQAPAGTQSKAEP 2267
Cdd:PRK07003 578 AAAPAAAPKPAaprvAVQVPTPRARAATGDAPPNGAARAEQAAESRGAP 626
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ACE1-Sec16-like |
cd09233 |
Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16; COPII coat ... |
1500-1862 |
3.49e-126 |
|
Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16; COPII coat complex plays an important role in vesicular traffic of newly synthezised proteins from the endoplasmatic reticulum (ER) to the Golgi apparatus by mediating the formation of transport vesicles. COPII consists of an outer coat, made up of the scaffold proteins Sec31 and Sec13, and the cargo adaptor complex, Sec23 and Sec24, which are recruited by the small GTPase Sar1. Sec16 is involved in the early steps of the assembly process. Sec16 forms elongated heterotetramers with Sec13, Sec13-(Sec16)2-Sec13. It interacts with Sec13 by insertion of a single beta-blade to close the six-bladded beta propeller of Sec13. In the same way Sec13 interacts with Sec31 and Nup145C, a nuclear pore protein, all of these contain a structurally related ancestral coatomer element 1 (ACE1). Sec16 is believed to be a key component in maintaining the integrity of the ER exit site.
Pssm-ID: 187750 [Multi-domain] Cd Length: 314 Bit Score: 399.71 E-value: 3.49e-126
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 1500 FPGPLGKDDTHKVDVINFAQNKATKCLQNESLIDKESASLLWNFIILLCRQNGTVVGTDIAElllrdhrtvwlpgkspne 1579
Cdd:cd09233 1 FPGPLIKGKTKKKDVLKWLEEKIAELEENEGYLDLEDKLLLWKLLKLLVRQNGKLVGTDIAE------------------ 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 1580 anlidftneaveqveeeesgeaqlsfltdsqtvtssvlEKETERFRELLLYGRKKDALESAMKNGLWGHALLLASKMDSR 1659
Cdd:cd09233 63 --------------------------------------QKALNRFRNLLLTGNRKEALELALDNGLWAHALLLASSLGKE 104
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 1660 THARVMTRFANSL-PINDPLQTVYQLMSGRMPAASTCCGDE------KWGDWRPHLAMVLSNLNNNMDVEsrTMATMGDT 1732
Cdd:cd09233 105 TWAEVVSRFARSEsKLNDPLQTLYQLFSGNSPEAITELADNpaeaewALGNWREHLAIILSNRTSNLDLE--ALVELGDL 182
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 1733 LASKGLLDAAHFCYLMAQVGFGVYTKKTTKLVLIGSNHSLPFLKFATNEAIQRTEAYEYAQSLGAHTCSLPNFQVFKFIY 1812
Cdd:cd09233 183 LAQRGLVEAAHICYLLAGVPLGPYPSSPSSCLLGGAVHNKSPRTFATPEAIQLTEIYEYALSLGNPQFGLPHLQPYKLIH 262
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 564339689 1813 LCRLAEMGLATQAFHYCEVIAKSV--LTQPTAYSPVLISQLIQMASQLRLFD 1862
Cdd:cd09233 263 AARLAELGLVSEALKYCEAIASSLksLTKSPYYDPNLLAQLQDLSERLSGTS 314
|
|
| Sec16_C |
pfam12931 |
Sec23-binding domain of Sec16; Sec16 is a multi-domain vesicle coat protein. The C-terminal ... |
1625-1859 |
1.25e-44 |
|
Sec23-binding domain of Sec16; Sec16 is a multi-domain vesicle coat protein. The C-terminal region is the part that binds to Sec23, a COPII vesicle coat protein. This association is part of the transport vesicle coat structure.
Pssm-ID: 432884 Cd Length: 279 Bit Score: 163.89 E-value: 1.25e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 1625 RELLLYGRKKDALESAMKNGLWGHALLLASKMDSRTHARVMTRFA------NSLPINDPLQTVYQLMSGRMPAA----ST 1694
Cdd:pfam12931 2 RALLLTGDREKALWLALDKKLWAHALLIASTLGKEKWKEVVQEFVrsefkgSNNKSGESLAALYQVFAGNSEEAvdelVP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 1695 CCGDEKWG--DWRPHLAMVLSNLNNNmDVESRTmaTMGDTLASKGLLDAAHFCYLMAQVGFGVytkkttkLVLIGSNHSL 1772
Cdd:pfam12931 82 PSKNALWAldNWRETLALVLSNRSPG-DVEALL--ALGDLLAQYGRTEAAHICFLLAGLPLSQ-------TVLLGADHVR 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 1773 PFLKFATN-EAIQRTEAYEYAQSLGAH---TCSLPNFQVFKFIYLCRLAEMGLATQAFHYCEVIAKSV--LTQPTAY-SP 1845
Cdd:pfam12931 152 FPSTFGNDlESILLTEIYEYALSLSPPqppFVGLPHLLPYKLQHAAVLAEYGLVSEAQKYCDAITASLksLTKKSPYyHP 231
|
250
....*....|....
gi 564339689 1846 VLISQLIQMASQLR 1859
Cdd:pfam12931 232 TLLAQLEDLSNRLS 245
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
3-313 |
4.09e-06 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 52.63 E-value: 4.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 3 PPPQAVPSGVAGPppaGNPRssfwansPYRKPANNNAPVAPiTRPLQPVTDPfafnrQTLQNTPVGSSSKSSPPNLPGPA 82
Cdd:PHA03247 2739 PAPPAVPAGPATP---GGPA-------RPARPPTTAGPPAP-APPAAPAAGP-----PRRLTRPAVASLSESRESLPSPW 2802
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 83 LPVFSQWPGLPVPPTNAGDSSTGLHEPlPGTLSQPRADPSLFPPASTPSSL-----PGLEVNR-------SAEVDSSSGP 150
Cdd:PHA03247 2803 DPADPPAAVLAPAAALPPAASPAGPLP-PPTSAQPTAPPPPPGPPPPSLPLggsvaPGGDVRRrppsrspAAKPAAPARP 2881
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 151 EVQMLPHPPHYIPGVGPEQPhgghlndsgagPDQSMNRHAPhdgavaHAASPFFPQPQMPGQWGPVhggPPPSYHHHSPC 230
Cdd:PHA03247 2882 PVRRLARPAVSRSTESFALP-----------PDQPERPPQP------QAPPPPQPQPQPPPPPQPQ---PPPPPPPRPQP 2941
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 231 LEGPVQDMGPQAASLPHFPSPSSLHEGPGhESRVPQTFTPASLASGEGneivhqqsknyPSSSFPPKHSfEQNSRVGNmW 310
Cdd:PHA03247 2942 PLAPTTDPAGAGEPSGAVPQPWLGALVPG-RVAVPRFRVPQPAPSREA-----------PASSTPPLTG-HSLSRVSS-W 3007
|
...
gi 564339689 311 ASA 313
Cdd:PHA03247 3008 ASS 3010
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
57-286 |
9.94e-06 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 51.19 E-value: 9.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 57 FNRQtlQNTPVGSSSKSSPPNLPGPALPVFSQWPGLPVPPTNAGDSSTGLHEPLP---------GTLSQPRADPSLFP-P 126
Cdd:pfam09770 102 FNRQ--QPAARAAQSSAQPPASSLPQYQYASQQSQQPSKPVRTGYEKYKEPEPIPdlqvdaslwGVAPKKAAAPAPAPqP 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 127 ASTPSSLPG----------LEVNRSAEVDSSSGPEVQMLPHPPHYIPGVGPEQPHGGHLNDSGAGPDQSMNRHAPHDGAV 196
Cdd:pfam09770 180 AAQPASLPApsrkmmsleeVEAAMRAQAKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQ 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 197 AH---------AASPFFPQPQMPGQWGPVHGGPPPSYHHHSPCLEGPVQDMGPQAASLPHFPSPSslHEGPGHESRVPQt 267
Cdd:pfam09770 260 GHpvtilqrpqSPQPDPAQPSIQPQAQQFHQQPPPVPVQPTQILQNPNRLSAARVGYPQNPQPGV--QPAPAHQAHRQQ- 336
|
250
....*....|....*....
gi 564339689 268 ftpaSLASGEGNEIVHQQS 286
Cdd:pfam09770 337 ----GSFGRQAPIITHPQQ 351
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
3-243 |
7.82e-05 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 48.14 E-value: 7.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 3 PPPQAVPSGVAGPPpagNPRSSFWANSPYRKPANNNAPVAPITRPLQPVTdpfafnrqtlQNTPVGSSSKSSPPNLPGPA 82
Cdd:PHA03378 596 PWPVPHPSQTPEPP---TTQSHIPETSAPRQWPMPLRPIPMRPLRMQPIT----------FNVLVFPTPHQPPQVEITPY 662
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 83 LPVFSQWPGLPVPPTNAGDSSTGLHEPLPGTLSQPRADPSlfpPASTPSSLPGlevnRSAEVDSSSGPevqmlPHPPHYI 162
Cdd:PHA03378 663 KPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPT---PMRPPAAPPG----RAQRPAAATGR-----ARPPAAA 730
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 163 PG-VGPEQPHGGHLNDSGAGPDQSMNRHAPHDGAVAHAASPFFPQPQMPGQWGPV-----HGGPPPSYHHHSPclEGPVQ 236
Cdd:PHA03378 731 PGrARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPApqqrpRGAPTPQPPPQAG--PTSMQ 808
|
....*..
gi 564339689 237 DMGPQAA 243
Cdd:PHA03378 809 LMPRAAP 815
|
|
| Sec16 |
pfam12932 |
Vesicle coat trafficking protein Sec16 mid-region; Sec16 is a multi-domain vesicle coat ... |
1452-1552 |
1.03e-04 |
|
Vesicle coat trafficking protein Sec16 mid-region; Sec16 is a multi-domain vesicle coat protein. This central region is the functional part of the molecules and thus is vital for the family's role in mediating the movement of protein-cargo between the organelles of the secretory pathway.
Pssm-ID: 432885 Cd Length: 119 Bit Score: 43.74 E-value: 1.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 1452 HVCARFGPGGQLL----KVIPNLPS-------EGQPALVEIHSLETLLqhtPEQEEMRSFPGPLGKDDTHKVDVI----- 1515
Cdd:pfam12932 1 HPIFSFGFGGKLVtmfpKRVPRYSTgqdvpmiKRSPGEVKIRNLKDVV---PLSEDLAKFPGPLVKGKSKKKEVLkwlse 77
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 564339689 1516 ---NFAQNKATKCLQNESLIDKESAS--LLWNFIILLCRQNG 1552
Cdd:pfam12932 78 rieELEQSLPYSDGSLESDEKKRAEEklLLWKLLKILVEHDG 119
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
2-360 |
1.41e-04 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 47.45 E-value: 1.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 2 QPPPQAVPSGVAGPPPAGNPRSSfWANSPYRKPANNNAP--VAPITRPLQPVTDPFAFNRQTLQNTPvgsssKSSPPNLP 79
Cdd:pfam03154 170 QPPVLQAQSGAASPPSPPPPGTT-QAATAGPTPSAPSVPpqGSPATSQPPNQTQSTAAPHTLIQQTP-----TLHPQRLP 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 80 GPALPVfSQWPGLPVPPTNAGDS--STGLHEPLPGTLSQPRADPSLFPPASTPSSLPGLEVNRSAEVDSSSGPEVqmlPH 157
Cdd:pfam03154 244 SPHPPL-QPMTQPPPPSQVSPQPlpQPSLHGQMPPMPHSLQTGPSHMQHPVPPQPFPLTPQSSQSQVPPGPSPAA---PG 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 158 PPHYIPGVGPEQPHGGHLNDSGAGPDQSMNRHAPHDGAVAHAASPFFPQPQM----PGQWGPV------HGGPPPSYH-- 225
Cdd:pfam03154 320 QSQQRIHTPPSQSQLQSQQPPREQPLPPAPLSMPHIKPPPTTPIPQLPNPQShkhpPHLSGPSpfqmnsNLPPPPALKpl 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 226 -----HHSPCLEGPVQDMGPQAASLP--------------------HFPSPSSLHEGPGHESRVPQTFTPASLASGEGNE 280
Cdd:pfam03154 400 sslstHHPPSAHPPPLQLMPQSQQLPpppaqppvltqsqslpppaaSHPPTSGLHQVPSQSPFPQHPFVPGGPPPITPPS 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 281 IVHQQSKNYPSSSFPPkhSFEQNSRVGNMWASAEFRQNPGVNKEHLLD----PAHVNPFTQGNSPENQVHHPPvaatNHA 356
Cdd:pfam03154 480 GPPTSTSSAMPGIQPP--SSASVSSSGPVPAAVSCPLPPVQIKEEALDeaeePESPPPPPRSPSPEPTVVNTP----SHA 553
|
....
gi 564339689 357 LQEA 360
Cdd:pfam03154 554 SQSA 557
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
2-398 |
4.13e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 46.08 E-value: 4.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 2 QPPPQAVPSGVAGPPPAGNPRSSFWANSPYRKPANNNAP--VAPITRPLQPVTDPfafnrQTLQNTPVGSSSKSSPPNLP 79
Cdd:PHA03247 2651 RPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARptVGSLTSLADPPPPP-----PTPEPAPHALVSATPLPPGP 2725
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 80 GPALPVFSQWPGLPVPPTNAGDSSTGLHEPLPGTLSQPRADPSLFPPAStPSSLPGLEVNRSAEVDSSSGPEVQMLPHPP 159
Cdd:PHA03247 2726 AAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAA-PAAGPPRRLTRPAVASLSESRESLPSPWDP 2804
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 160 HYIPGVGPEQPHGGHLNDSGAGPDQSMNRHAPhdgAVAHAASPFFPQPQMPGQW----GPVHGGPPPsyhhhSPCLEGPV 235
Cdd:PHA03247 2805 ADPPAAVLAPAAALPPAASPAGPLPPPTSAQP---TAPPPPPGPPPPSLPLGGSvapgGDVRRRPPS-----RSPAAKPA 2876
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 236 QDMGPQAASLPHFPSPSSLHEGPGHESRVPQTFTPASLASGEGNEIVHQQSKNYPSSSFPPKHSFEQNSRVGNMWASAEF 315
Cdd:PHA03247 2877 APARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPS 2956
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 316 RQNPGVNKEHLLDPAHVNPFTQGNSPENQVHHP---PVAATNHALQEAASGALSMFFQGEETENEENLSSEKAGLDDRLD 392
Cdd:PHA03247 2957 GAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPassTPPLTGHSLSRVSSWASSLALHEETDPPPVSLKQTLWPPDDTED 3036
|
....*.
gi 564339689 393 SGSFSS 398
Cdd:PHA03247 3037 SDADSL 3042
|
|
| PHA03379 |
PHA03379 |
EBNA-3A; Provisional |
3-221 |
1.19e-03 |
|
EBNA-3A; Provisional
Pssm-ID: 223066 [Multi-domain] Cd Length: 935 Bit Score: 44.28 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 3 PPPQAVPSGVAGPPPAGNPRSSfwansPYRKPANNNAPVAPITRPLQPVTDPFAFNRQTLQNTPVGSSSKS-SPPNLPGP 81
Cdd:PHA03379 579 PPRSPSQMSVRDRLARLRAEAQ-----PYQASVEVQPPQLTQVSPQQPMEYPLEPEQQMFPGSPFSQVADVmRAGGVPAM 653
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 82 ALPVFS---QWP---GLPVPPTNAGdssTGLHEPLPGTLSQPRADPSLFPPASTPSSLPGLEvnrSAEVDSSSGPEVQML 155
Cdd:PHA03379 654 QPQYFDlplQQPisqGAPLAPLRAS---MGPVPPVPATQPQYFDIPLTEPINQGASAAHFLP---QQPMEGPLVPERWMF 727
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564339689 156 PHPP---HYIPGVGPEQPHGGHLNdsgagpdQSMNRHAPhdgavahaASPFFPQPQMPGQWGP----VHGGPP 221
Cdd:PHA03379 728 QGATlsqSVRPGVAQSQYFDLPLT-------QPINHGAP--------AAHFLHQPPMEGPWVPeqwmFQGAPP 785
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
2-246 |
1.49e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.16 E-value: 1.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 2 QPPPQAVPSGVAG---PPPAGNPRSS------FWANSPYRKPANNNAP--------VAPITRPLQPVTDPFAFNRQTLQn 64
Cdd:PHA03247 2611 PAPPSPLPPDTHApdpPPPSPSPAANepdphpPPTVPPPERPRDDPAPgrvsrprrARRLGRAAQASSPPQRPRRRAAR- 2689
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 65 TPVGS--SSKSSPPNLPGPALPVFSQWPGLPVPPTNAgdSSTGLHEPLPgtlsqprADPSLFPPASTPsSLPGLEvNRSA 142
Cdd:PHA03247 2690 PTVGSltSLADPPPPPPTPEPAPHALVSATPLPPGPA--AARQASPALP-------AAPAPPAVPAGP-ATPGGP-ARPA 2758
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 143 EVDSSSGPEVQMLPHPPHYIPGVGPEQPHGGHLNDSGAGPDqsmnrhAPHDGAvAHAASPFFPQPQMPGQWGPVHGGPPP 222
Cdd:PHA03247 2759 RPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLP------SPWDPA-DPPAAVLAPAAALPPAASPAGPLPPP 2831
|
250 260
....*....|....*....|....
gi 564339689 223 SyhhhSPCLEGPVQDMGPQAASLP 246
Cdd:PHA03247 2832 T----SAQPTAPPPPPGPPPPSLP 2851
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
3-275 |
2.75e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 43.39 E-value: 2.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 3 PPPQAVPSgvagPPPAGNPRSSfwansPYRKPANNNAPVAPITRPLQPVTDPfafnRQTLQNTPVGSSSKSSPPNLPGPA 82
Cdd:PHA03247 2551 PPPPLPPA----APPAAPDRSV-----PPPRPAPRPSEPAVTSRARRPDAPP----QSARPRAPVDDRGDPRGPAPPSPL 2617
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 83 LPVFSQWPGLPVPPTNAGDSSTGLHEPLPGTLSQPRADPSlfPPASTPSSlpglEVNRSAEVDSSSGPEVQmlPHPPHYI 162
Cdd:PHA03247 2618 PPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPA--PGRVSRPR----RARRLGRAAQASSPPQR--PRRRAAR 2689
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 163 PGVGPeqphgghLNDSGAGPDQSMNRHAPHDGAVahAASPFFPQPQMPGQWGPvhggPPPSYHHHSPCLEGPVQDMGPQA 242
Cdd:PHA03247 2690 PTVGS-------LTSLADPPPPPPTPEPAPHALV--SATPLPPGPAAARQASP----ALPAAPAPPAVPAGPATPGGPAR 2756
|
250 260 270
....*....|....*....|....*....|....
gi 564339689 243 ASLPHFPS-PSSLHEGPGHESRVPQTFTPASLAS 275
Cdd:PHA03247 2757 PARPPTTAgPPAPAPPAAPAAGPPRRLTRPAVAS 2790
|
|
| dnaA |
PRK14086 |
chromosomal replication initiator protein DnaA; |
111-265 |
3.18e-03 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 42.89 E-value: 3.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 111 PGTLSQPRADPSLFPPAS-TPSSLPGLEVNRSAEVDSSSGPEVQMLPHPPHYipgVGPEQPHGGHLNDSG-AGPDQSMNR 188
Cdd:PRK14086 54 PNEFAKEVLEGRLAPIISeTLSRELGRPIRIAITVDPSAGEPAPPPPHARRT---SEPELPRPGRRPYEGyGGPRADDRP 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 189 HAPHDGAVAHAASPFFPQPQMPGQWGPVHG------------GPPPSYHHHSPCLEGPVQDM--GPQAASLPHFPSPSSL 254
Cdd:PRK14086 131 PGLPRQDQLPTARPAYPAYQQRPEPGAWPRaaddygwqqqrlGFPPRAPYASPASYAPEQERdrEPYDAGRPEYDQRRRD 210
|
170
....*....|.
gi 564339689 255 HEGPGHESRVP 265
Cdd:PRK14086 211 YDHPRPDWDRP 221
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
1987-2267 |
7.00e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 41.76 E-value: 7.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 1987 GPPGSVLGFPESSRSDPAVLHPGQALPPATPglqesgPPLQEARSPDPEMVPQGSPVRHSPPEPReeefgknVADLGSSR 2066
Cdd:PRK07003 371 GVPARVAGAVPAPGARAAAAVGASAVPAVTA------VTGAAGAALAPKAAAAAAATRAEAPPAA-------PAPPATAD 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 2067 TAQDSETSPVWDLGSSSLTRAPSLTPDSEGKKPAQAVKKEPKEPKKTeswfsrwlPGKKRTEAYLPDDKNKSivwdekkn 2146
Cdd:PRK07003 438 RGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDA--------PPDAAFEPAPRAAAPSA-------- 501
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 2147 qwVNLNEPEEEKKAPPPPPTSFPrVPQAAPTGPAGPPMASVNVFSRKAGGSRARyVDVLNPSG----TQRSEPALAPADF 2222
Cdd:PRK07003 502 --ATPAAVPDARAPAAASREDAP-AAAAPPAPEARPPTPAAAAPAARAGGAAAA-LDVLRNAGmrvsSDRGARAAAAAKP 577
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 564339689 2223 FAPLAPLPIPS----NLFVPNPDAEESQPADGTGCRGQAPAGTQSKAEP 2267
Cdd:PRK07003 578 AAAPAAAPKPAaprvAVQVPTPRARAATGDAPPNGAARAEQAAESRGAP 626
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
3-296 |
8.46e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 41.70 E-value: 8.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 3 PPPQAVPSGvAGPPPAGNPRSSFWANSPYRKPANNNAPVAPitrplqpvtdpfafnrqTLQNTPVGSSSKSSPPNLPGPA 82
Cdd:PHA03307 116 PPPPTPPPA-SPPPSPAPDLSEMLRPVGSPGPPPAASPPAA-----------------GASPAAVASDAASSRQAALPLS 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 83 LPVFSQWPGLPVPPTNAGDSSTGLHEPLPGTLSQPRADPSlfpPASTPSSLPGLEVNRSAEVDSSSGPEVQM-------- 154
Cdd:PHA03307 178 SPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASA---SSPAPAPGRSAADDAGASSSDSSSSESSGcgwgpene 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339689 155 --LPHPPHYIPGVGPEQPHGGHLNDSGAGPDQSMNRHAPHDGAvahaaspffPQPQMPGqwgpvhGGPPPSYHHHSPCLE 232
Cdd:PHA03307 255 cpLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPS---------PSPSSPG------SGPAPSSPRASSSSS 319
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564339689 233 GPVQDMGPQAASLPHFPSPSSLHEGPGHESrvpqtftPASLASGEGNEIVHQQSKNYPSSSFPP 296
Cdd:PHA03307 320 SSRESSSSSTSSSSESSRGAAVSPGPSPSR-------SPSPSRPPPPADPSSPRKRPRPSRAPS 376
|
|
| |
