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Conserved domains on  [gi|564348486|ref|XP_006237211|]
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WASH complex subunit 2 isoform X4 [Rattus norvegicus]

Protein Classification

CAP-ZIP_m domain-containing protein( domain architecture ID 10633686)

CAP-ZIP_m domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CAP-ZIP_m pfam15255
WASH complex subunit CAP-Z interacting, central region; This domain is found on WASH complex ...
 897-1034 6.94e-72

WASH complex subunit CAP-Z interacting, central region; This domain is found on WASH complex subunits FAM21 and CAP-ZIP proteins, as well as on VPEF (vaccinia virus penetration factor). This family of proteins is found in eukaryotes. Proteins in this family are typically between 305 and 1321 amino acids in length. The exact function of this region is not known.


:

Pssm-ID: 464595 [Multi-domain]  Cd Length: 140  Bit Score: 235.88  E-value: 6.94e-72
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564348486   897 TPFKSREPSSRIGKIQANLAINPATLLPSVAPQIPGAKPASSELAFPSSEPARSHIREAVPTLPGSEEAGVSFDLPAQAD 976
Cdd:pfam15255    1 NPFKTKEPSSRIGKLQANLAINPAALLPGAAPQIPGAKSVLPGLAFPSSEPARSTSPESTPTAQGSGEAGVSFDLPAQAD 80

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 564348486   977 TLHSANKGRVKVRGKRRPQTRAARRLAAQESSEAEDVIIDRGPVTQLSS--SPVLPNGHQ 1034
Cdd:pfam15255   81 TLHSANKSRAKVTGKRRPQTRAARRLAAQESSEAEDVSSPEGAGAQLASgaSPASPVASQ 140
 
Name Accession Description Interval E-value
CAP-ZIP_m pfam15255
WASH complex subunit CAP-Z interacting, central region; This domain is found on WASH complex ...
 897-1034 6.94e-72

WASH complex subunit CAP-Z interacting, central region; This domain is found on WASH complex subunits FAM21 and CAP-ZIP proteins, as well as on VPEF (vaccinia virus penetration factor). This family of proteins is found in eukaryotes. Proteins in this family are typically between 305 and 1321 amino acids in length. The exact function of this region is not known.


Pssm-ID: 464595 [Multi-domain]  Cd Length: 140  Bit Score: 235.88  E-value: 6.94e-72
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564348486   897 TPFKSREPSSRIGKIQANLAINPATLLPSVAPQIPGAKPASSELAFPSSEPARSHIREAVPTLPGSEEAGVSFDLPAQAD 976
Cdd:pfam15255    1 NPFKTKEPSSRIGKLQANLAINPAALLPGAAPQIPGAKSVLPGLAFPSSEPARSTSPESTPTAQGSGEAGVSFDLPAQAD 80

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 564348486   977 TLHSANKGRVKVRGKRRPQTRAARRLAAQESSEAEDVIIDRGPVTQLSS--SPVLPNGHQ 1034
Cdd:pfam15255   81 TLHSANKSRAKVTGKRRPQTRAARRLAAQESSEAEDVSSPEGAGAQLASgaSPASPVASQ 140
 
Name Accession Description Interval E-value
CAP-ZIP_m pfam15255
WASH complex subunit CAP-Z interacting, central region; This domain is found on WASH complex ...
 897-1034 6.94e-72

WASH complex subunit CAP-Z interacting, central region; This domain is found on WASH complex subunits FAM21 and CAP-ZIP proteins, as well as on VPEF (vaccinia virus penetration factor). This family of proteins is found in eukaryotes. Proteins in this family are typically between 305 and 1321 amino acids in length. The exact function of this region is not known.


Pssm-ID: 464595 [Multi-domain]  Cd Length: 140  Bit Score: 235.88  E-value: 6.94e-72
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564348486   897 TPFKSREPSSRIGKIQANLAINPATLLPSVAPQIPGAKPASSELAFPSSEPARSHIREAVPTLPGSEEAGVSFDLPAQAD 976
Cdd:pfam15255    1 NPFKTKEPSSRIGKLQANLAINPAALLPGAAPQIPGAKSVLPGLAFPSSEPARSTSPESTPTAQGSGEAGVSFDLPAQAD 80

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 564348486   977 TLHSANKGRVKVRGKRRPQTRAARRLAAQESSEAEDVIIDRGPVTQLSS--SPVLPNGHQ 1034
Cdd:pfam15255   81 TLHSANKSRAKVTGKRRPQTRAARRLAAQESSEAEDVSSPEGAGAQLASgaSPASPVASQ 140
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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