|
Name |
Accession |
Description |
Interval |
E-value |
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
1-2127 |
0e+00 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 2017.23 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1 MAFCTQLMLLLWKNYTYRRRQPIQLVVELLWPLFLFFILVAVRHSHPPLEHHECHFPNKPLPSAGTVPWLQGLVCNVNNS 80
Cdd:TIGR01257 1 MGFLRQIQLLLWKNWTLRKRQKIRFVVELVWPLSLFLVLIWLRNANPLYSQHECHFPNKAMPSAGMLPWLQGIFCNVNNP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 81 CFQHPTPGEKPGVLSNFKDSLISRLLADAHTVL-GGHSTQDM------LAALGKLIPVLRA------------------- 134
Cdd:TIGR01257 81 CFQSPTPGESPGIVSNYNNSILARVYRDFQELLmDAPESQHLgqvwaeLRTLSQFMDTLRThperiagrgirirdilkde 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 135 ---------------------VGSGAWPQESNQPAKQGSVTE------LLEKIL---QRASLETVlgqaQDSMRKFSDAT 184
Cdd:TIGR01257 161 ealtlflmkniglsdsvvyllVNSQVRPEQFAYGVPDLELKDiacseaLLERFIifsQRRGAQTV----RDALCSLSQGT 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 185 RTVAQELL-----------TLPSLVELRA---------------------LLRRPrgSAGSLELISEALCSTKGPSS--- 229
Cdd:TIGR01257 237 LQWIEDTLyanvdffklfhVLPTLLDSRSqginlrswggilsdmspriqeFIHRP--SVQDLLWVTRPLLQNGGPETftq 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 230 ------------PGG-----LSLNWYEANQINEFMGPELAPTLP----DSSLSPACSEFVGALDDHPVSRLLWRRLKPLI 288
Cdd:TIGR01257 315 lmgilsdllcgyPEGggsrvFSFNWYEDNNYKAFLGIDSTRKDPiysyDKRTTSFCNALIQSLESNPLTKIAWRAAKPLL 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 289 LGKILFAPDTNFTRKLMAQVNQTFEELALLRDLHELWGVLGPQIFNFMNDSTNVAMLQKLLDVEGTG--WQQQTPKGQKQ 366
Cdd:TIGR01257 395 MGKILFTPDSPAARRILKNANSTFEELERVRKLVKAWEEVGPQIWYFFDKSTQMTMIRDTLQNPTVKdfINRQLGEEGIT 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 367 LEAIRDFL--DPSRGR------YNWQEAHADMGRLAEILGQILECVSLDKLEAVPSEEALVSRALELLGERRLWAGIVFl 438
Cdd:TIGR01257 475 AEAVLNFLynGPREKQaddmtnFDWRDIFNITDRFLRLANQYLECLVLDKFESYDDEVQLTQRALSLLEENRFWAGVVF- 553
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 439 sPE-HPLDSSEPPsptttgpgHLRVKIRMDIDDVTRTNKIRDKFWDPGPSADPLMDLRYVWGGFVYLQDLLEQAAVRVLS 517
Cdd:TIGR01257 554 -PDmYPWTSSLPP--------HVKYKIRMDIDVVEKTNKIKDRYWDSGPRADPVEDFRYIWGGFAYLQDMVEQGITRSQM 624
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 518 GRDSRAGLYLQQMPHPCYVDDVFLRVLSRSLPLFLTLAWIYSVALTVKAVVREKETRLRETMRAMGLSRAVLWLGWFLSC 597
Cdd:TIGR01257 625 QAEPPVGIYLQQMPYPCFVDDSFMIILNRCFPIFMVLAWIYSVSMTVKSIVLEKELRLKETLKNQGVSNAVIWCTWFLDS 704
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 598 LGPFLVSAALLVLVLKLGNILPYSHPVVVFLFLAAFAVATVAQSFLLSAFFSRANLAAACGGLAYFALYLPYVLCVAWRE 677
Cdd:TIGR01257 705 FSIMSMSIFLLTIFIMHGRILHYSDPFILFLFLLAFSTATIMQCFLLSTFFSKASLAAACSGVIYFTLYLPHILCFAWQD 784
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 678 RLPLGGLLAVSLLSPVAFGFGCESLALLEEQGDGAQWHNLGTGPAE-DVFSLAQVSAFLLLDAVIYGLALWYLEAVCPGQ 756
Cdd:TIGR01257 785 RMTADLKTAVSLLSPVAFGFGTEYLVRFEEQGLGLQWSNIGNSPLEgDEFSFLLSMKMMLLDAALYGLLAWYLDQVFPGD 864
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 757 YGIPEPWNFPFRRSYWCGP---------GPPKSSVLAPAPQDPK-------VLVEEPPPGLVPGVSIRGLKKHFRGSPQP 820
Cdd:TIGR01257 865 YGTPLPWYFLLQESYWLGGegcstreerALEKTEPLTEEMEDPEhpegindSFFERELPGLVPGVCVKNLVKIFEPSGRP 944
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 821 ALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIRPHLGICPQYNVLFDMLTVEEHV 900
Cdd:TIGR01257 945 AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHI 1024
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 901 WFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELL 980
Cdd:TIGR01257 1025 LFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLL 1104
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 981 LKYREGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSPLFLRRHLGCGYYLTLVkssqslvthdlkgdtedpRREKKS 1060
Cdd:TIGR01257 1105 LKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFYLTLV------------------RKMKNI 1166
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1061 GSEGKTADTVLTRDGPHRSSQAPApDAVPVTPSAAL------ILELVQRHVPGAQLVEELPHELVLALPYAGALDGSFAT 1134
Cdd:TIGR01257 1167 QSQRGGCEGTCSCTSKGFSTRCPA-RVDEITPEQVLdgdvneLMDLVYHHVPEAKLVECIGQELIFLLPNKNFKQRAYAS 1245
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1135 VFQELDQQLERLGLTGYGISDTNLEEIFLKVVEEAHAHGEGGDPRQQQHLLTATPQPHTGPEASVLENGElAKLVLDPQA 1214
Cdd:TIGR01257 1246 LFRELEETLADLGLSSFGISDTPLEEIFLKVTEDADSGSLFAGGAQQKRENANLRHPCSGPTEKAGQTPQ-ASHTCSPGQ 1324
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1215 ----PKGSAPTTAQV------QGWTLTCQQLRALLHKRFLLARRSRRGLFAQIVLPALFVGLALFFTLIVPPFGQYPPLQ 1284
Cdd:TIGR01257 1325 paahPEGQPPPEPEDpgvplnTGARLILQHVQALLVKRFQHTIRSHKDFLAQIVLPATFVFLALMLSIIIPPFGEYPALT 1404
|
1450 1460 1470 1480 1490 1500 1510 1520
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1285 LSPAMYGPQVSFFSEDAPADPNRMKLLEALLGEAGLQDPSVQGKGSRGSECTHSLAcyFTVPEVPPDVASILASGNWTPD 1364
Cdd:TIGR01257 1405 LHPWMYGQQYTFFSMDEPNSEHLEVLADVLLNKPGFGNRCLKEEWLPEYPCGNSTP--WKTPSVSPNITHLFQKQKWTAA 1482
|
1530 1540 1550 1560 1570 1580 1590 1600
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1365 SPSPACQCSQPGARRLLPDCPAGAGGPPPPQAMAGFGEVVQNLTGRNVSDFLVKTYPSLVRRGLKTKKWVDEVRYGGFSL 1444
Cdd:TIGR01257 1483 HPSPSCRCSTREKLTMLPECPEGAGGLPPPQRTQRSTEILQDLTDRNISDFLVKTYPALIRSSLKSKFWVNEQRYGGISI 1562
|
1610 1620 1630 1640 1650 1660 1670 1680
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1445 GGRDPDLP-SGREVVRTVAEMRALLSPQPGNTLDRILNNLTQWALGLDARNSLKIWFNNKGWHAMVAFVNRANNGLLRAF 1523
Cdd:TIGR01257 1563 GGKLPAIPiTGEALVGFLSDLGQMMNVSGGPVTREASKEMPDFLKHLETEDNIKVWFNNKGWHALVSFLNVAHNAILRAS 1642
|
1690 1700 1710 1720 1730 1740 1750 1760
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1524 LPSGSVRHAHSITTLNHPLNLTKEQLSEATLIASSVDVLVSICVVFAMSFVPASFTLVLIEERITRAKHLQLVSGLPQTL 1603
Cdd:TIGR01257 1643 LPKDRDPEEYGITVISQPLNLTKEQLSEITVLTTSVDAVVAICVIFAMSFVPASFVLYLIQERVNKAKHLQFISGVSPTT 1722
|
1770 1780 1790 1800 1810 1820 1830 1840
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1604 YWLGNFLWDMCNYLVAVCIVVLIFLAFQQKAYVAPENLPALLLLLLLYGWSITPLMYPASFFFSVPSTAYVVLTCINLFI 1683
Cdd:TIGR01257 1723 YWLTNFLWDIMNYAVSAGLVVGIFIGFQKKAYTSPENLPALVALLMLYGWAVIPMMYPASFLFDVPSTAYVALSCANLFI 1802
|
1850 1860 1870 1880 1890 1900 1910 1920
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1684 GINSSMATFVLELL-SDQNLQEVSRILKQVFLIFPHFCLGRGLIDMVRNQAMADAFERLGDKQFQSPLRWDIIGKNLLAM 1762
Cdd:TIGR01257 1803 GINSSAITFVLELFeNNRTLLRFNAMLRKLLIVFPHFCLGRGLIDLALSQAVTDVYAQFGEEHSANPFQWDLIGKNLVAM 1882
|
1930 1940 1950 1960 1970 1980 1990 2000
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1763 VAQGPLFLLITLLLQHR---NRLLPQPKSRlppPLGEEDEDVVRERERVTKGATQGDVLVLRDLTKVYRGQRSPAVDHLC 1839
Cdd:TIGR01257 1883 AVEGVVYFLLTLLIQHHfflSRWIAEPAKE---PIFDEDDDVAEERQRIISGGNKTDILRLNELTKVYSGTSSPAVDRLC 1959
|
2010 2020 2030 2040 2050 2060 2070 2080
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1840 LGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAHRSMGYCPQSDAIFDLLTGREHLELFARL 1919
Cdd:TIGR01257 1960 VGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARL 2039
|
2090 2100 2110 2120 2130 2140 2150 2160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1920 RGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVRE 1999
Cdd:TIGR01257 2040 RGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE 2119
|
2170 2180 2190 2200 2210 2220 2230 2240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 2000 GRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHLKSRFGAGHTLTLRV--PPDQ--PE--PAIAFIVTTFPDAELR 2073
Cdd:TIGR01257 2120 GRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYIVTMKIksPKDDllPDlnPVEQFFQGNFPGSVQR 2199
|
2250 2260 2270 2280 2290
....*....|....*....|....*....|....*....|....*....|....
gi 564358039 2074 EVHGSRLRFQLPPGggcKLARVFRELAAQGKAHGVEDFSVSQTTLEEVFLYFSK 2127
Cdd:TIGR01257 2200 ERHYNMLQFQVSSS---SLARIFQLLISHKDSLLIEEYSVTQTTLDQVFVNFAK 2250
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
1818-2038 |
7.99e-110 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 348.73 E-value: 7.99e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYRGQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAHRSMGYC 1897
Cdd:cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1898 PQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEP 1977
Cdd:cd03263 81 PQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEP 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564358039 1978 TTGMDPSARRFLWnNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHLK 2038
Cdd:cd03263 161 TSGLDPASRRAIW-DLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
805-1024 |
7.84e-109 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 346.03 E-value: 7.84e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFRGSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIRPHLGIC 884
Cdd:cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 885 PQYNVLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEP 964
Cdd:cd03263 81 PQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEP 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 965 TAGVDPASRRGIWELLLKYREGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSPLFLR 1024
Cdd:cd03263 161 TSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
1818-2041 |
6.25e-85 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 278.10 E-value: 6.25e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYRGQRspAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAHRSMGYC 1897
Cdd:COG1131 1 IEVRGLTKRYGDKT--ALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAEVRRRIGYV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1898 PQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEP 1977
Cdd:COG1131 79 PQEPALYPDLTVRENLRFFARLYGLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILDEP 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564358039 1978 TTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHLKSRF 2041
Cdd:COG1131 159 TSGLDPEARRELWELLRELAAEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKARL 222
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
805-1027 |
1.23e-81 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 268.47 E-value: 1.23e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFRGspQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIRPHLGIC 884
Cdd:COG1131 1 IEVRGLTKRYGD--KTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAEVRRRIGYV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 885 PQYNVLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEP 964
Cdd:COG1131 79 PQEPALYPDLTVRENLRFFARLYGLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILDEP 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564358039 965 TAGVDPASRRGIWELLLKYR-EGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSPL-FLRRHL 1027
Cdd:COG1131 159 TSGLDPEARRELWELLRELAaEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDeLKARLL 223
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
1825-2125 |
4.94e-69 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 234.98 E-value: 4.94e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1825 KVYRGqrSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAHRSMGYCPQSDAIF 1904
Cdd:TIGR01188 1 KVYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVD 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1905 DLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPS 1984
Cdd:TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1985 ARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHLKSRFGAGHTLTLRVPPDQPEPAIAFIV 2064
Cdd:TIGR01188 159 TRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDTLESRPRDIQSLKVEVSMLI 238
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564358039 2065 ttfpdAELREVHGSRLRFQLP--------PGGGCKLARVFRELAAQGKAhgVEDFSVSQTTLEEVFLYF 2125
Cdd:TIGR01188 239 -----AELGETGLGLLAVTVDsdrikilvPDGDETVPEIVEAAIRNGIR--IRSISTERPSLDDVFLKL 300
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
1818-2038 |
1.92e-66 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 224.56 E-value: 1.92e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYRGQRspAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAHRSMGYC 1897
Cdd:cd03265 1 IEVENLVKKYGDFE--AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1898 PQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEP 1977
Cdd:cd03265 79 FQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEP 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564358039 1978 TTGMDPSARRFLWNNLLSVVRE-GRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHLK 2038
Cdd:cd03265 159 TIGLDPQTRAHVWEYIEKLKEEfGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEELK 220
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
805-1014 |
9.84e-63 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 211.87 E-value: 9.84e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFRGspQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIRPHLGIC 884
Cdd:cd03230 1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 885 PQYNVLFDMLTVEEHVwfygrlkgvsaaaidseqehlirdvglipkrdtqtrHLSGGMQRKLSVAIAFVGGSRVVIMDEP 964
Cdd:cd03230 79 PEEPSLYENLTVRENL------------------------------------KLSGGMKQRLALAQALLHDPELLILDEP 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 564358039 965 TAGVDPASRRGIWELLLKYR-EGRTLILSTHHLDEAELLGDRVAMVASGSL 1014
Cdd:cd03230 123 TSGLDPESRREFWELLRELKkEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
1818-2028 |
1.29e-61 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 208.41 E-value: 1.29e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYRGQrsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAHRSMGYC 1897
Cdd:cd03230 1 IEVRNLSKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1898 PQSDAIFDLLTGREHLElfarlrgvpeaqvaqtalsglvrlglpsyadrpagtYSGGNKRKLATALALVGDPAVVFLDEP 1977
Cdd:cd03230 79 PEEPSLYENLTVRENLK------------------------------------LSGGMKQRLALAQALLHDPELLILDEP 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 564358039 1978 TTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGRF 2028
Cdd:cd03230 123 TSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
1817-2042 |
8.41e-61 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 208.94 E-value: 8.41e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTKVYrgQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAHRSMGY 1896
Cdd:COG4555 1 MIEVENLSKKY--GKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREARRQIGV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1897 CPQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDE 1976
Cdd:COG4555 79 LPDERGLYDRLTVRENIRYFAELYGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLLDE 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564358039 1977 PTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHLKSRFG 2042
Cdd:COG4555 159 PTNGLDVMARRLLREILRALKKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELREEIG 224
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
807-1014 |
1.34e-59 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 205.86 E-value: 1.34e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 807 IRGLKKHFRGSPqpALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIRPHLGICPQ 886
Cdd:COG4555 4 VENLSKKYGKVP--ALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREARRQIGVLPD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 887 YNVLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTA 966
Cdd:COG4555 82 ERGLYDRLTVRENIRYFAELYGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLLDEPTN 161
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 564358039 967 GVDPASRRGIWELLLKYR-EGRTLILSTHHLDEAELLGDRVAMVASGSL 1014
Cdd:COG4555 162 GLDVMARRLLREILRALKkEGKTVLFSSHIMQEVEALCDRVVILHKGKV 210
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
820-1028 |
3.95e-58 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 203.78 E-value: 3.95e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 820 PALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIRPHLGICPQYNVLFDMLTVEEH 899
Cdd:TIGR01188 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGREN 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 900 VWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWEL 979
Cdd:TIGR01188 87 LEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDY 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 564358039 980 LLKYRE-GRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSPLFLRRHLG 1028
Cdd:TIGR01188 167 IRALKEeGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLG 216
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
821-1020 |
4.28e-56 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 194.90 E-value: 4.28e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 821 ALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIRPHLGICPQYNVLFDMLTVEEHV 900
Cdd:cd03265 15 AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 901 WFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELL 980
Cdd:cd03265 95 YIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYI 174
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 564358039 981 --LKYREGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSP 1020
Cdd:cd03265 175 ekLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTP 216
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1817-2122 |
6.12e-56 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 197.25 E-value: 6.12e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTKVYRGQRspAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPsaaHRSMGY 1896
Cdd:COG4152 1 MLELKGLTKRFGDKT--AVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDPED---RRRIGY 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1897 CPQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDE 1976
Cdd:COG4152 76 LPEERGLYPKMKVGEQLVYLARLKGLSKAEAKRRADEWLERLGLGDRANKKVEELSKGNQQKVQLIAALLHDPELLILDE 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1977 PTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHLKSRFGAgHTLTLRVPPDQP 2056
Cdd:COG4152 156 PFSGLDPVNVELLKDVIRELAAKGTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEIRRQFGR-NTLRLEADGDAG 234
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564358039 2057 EpaiafiVTTFPDAELREVHGSRLRFQLPPGGgcKLARVFRELAAQGkahGVEDFSVSQTTLEEVF 2122
Cdd:COG4152 235 W------LRALPGVTVVEEDGDGAELKLEDGA--DAQELLRALLARG---PVREFEEVRPSLNEIF 289
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
1818-2032 |
5.59e-54 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 188.73 E-value: 5.59e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYRGQRSP--AVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAHRSMG 1895
Cdd:cd03266 2 ITADALTKRFRDVKKTvqAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1896 YCPQSDAIFDLLTGREHLELFARLRGVpEAQVAQTALSGLV-RLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFL 1974
Cdd:cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGL-KGDELTARLEELAdRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564358039 1975 DEPTTGMDPSARRflwnNLLSVVRE----GRSVVLTSHSMEECEALCTRLAIMVNGRFRCLG 2032
Cdd:cd03266 161 DEPTTGLDVMATR----ALREFIRQlralGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
1818-2029 |
2.35e-51 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 180.85 E-value: 2.35e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYRGQRspAVDHLCLGIPPGeCFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAHRSMGYC 1897
Cdd:cd03264 1 LQLENLTKRYGKKR--ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1898 PQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEP 1977
Cdd:cd03264 78 PQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEP 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 564358039 1978 TTGMDPSAR-RFLwnNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGRFR 2029
Cdd:cd03264 158 TAGLDPEERiRFR--NLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLV 208
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
805-1018 |
2.01e-50 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 178.16 E-value: 2.01e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFRGspQPALRGLNLDFYEGhITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIRPHLGIC 884
Cdd:cd03264 1 LQLENLTKRYGK--KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 885 PQYNVLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEP 964
Cdd:cd03264 78 PQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEP 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 564358039 965 TAGVDPASRRGIWELLLKYREGRTLILSTHHLDEAELLGDRVAMVASGSLCCCG 1018
Cdd:cd03264 158 TAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
1793-2153 |
1.60e-48 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 192.15 E-value: 1.60e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1793 PLGEEDEDVVRER-------ERVTKGATQGdvLVLRDLTKVYRGQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMV 1865
Cdd:TIGR01257 899 PLTEEMEDPEHPEgindsffERELPGLVPG--VCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSIL 976
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1866 TGDTLPSSGEAVLAGHNVAQEPSAAHRSMGYCPQSDAIFDLLTGREHLELFARLRGVP--EAQVAQTALsgLVRLGLPSY 1943
Cdd:TIGR01257 977 TGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSweEAQLEMEAM--LEDTGLHHK 1054
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1944 ADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVvREGRSVVLTSHSMEECEALCTRLAIM 2023
Cdd:TIGR01257 1055 RNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY-RSGRTIIMSTHHMDEADLLGDRIAII 1133
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 2024 VNGRFRCLGSAQHLKSRFGAGHTLTL-------------------------------RVPPDQPEPAIA--------FIV 2064
Cdd:TIGR01257 1134 SQGRLYCSGTPLFLKNCFGTGFYLTLvrkmkniqsqrggcegtcsctskgfstrcpaRVDEITPEQVLDgdvnelmdLVY 1213
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 2065 TTFPDAELREVHGSRLRFQLPPGGGCK--LARVFRELAAQGKAHGVEDFSVSQTTLEEVFLYFSKDQGEEEEGSGQETET 2142
Cdd:TIGR01257 1214 HHVPEAKLVECIGQELIFLLPNKNFKQraYASLFRELEETLADLGLSSFGISDTPLEEIFLKVTEDADSGSLFAGGAQQK 1293
|
410
....*....|.
gi 564358039 2143 REvsTPGLQHP 2153
Cdd:TIGR01257 1294 RE--NANLRHP 1302
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1817-2027 |
1.56e-47 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 173.45 E-value: 1.56e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTKVYrGQRSpAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAHRSMGY 1896
Cdd:PRK13537 7 PIDFRNVEKRY-GDKL-VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1897 CPQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDE 1976
Cdd:PRK13537 85 VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDE 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 564358039 1977 PTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:PRK13537 165 PTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGR 215
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
806-1012 |
2.01e-47 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 169.57 E-value: 2.01e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 806 SIRGLKKHFRGSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDV-QTNMAAIRPHLGIC 884
Cdd:cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLtKLSLKELRRKVGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 885 PQY-NVLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDE 963
Cdd:cd03225 81 FQNpDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDE 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 564358039 964 PTAGVDPASRRGIWELLLKY-REGRTLILSTHHLDEAELLGDRVAMVASG 1012
Cdd:cd03225 161 PTAGLDPAGRRELLELLKKLkAEGKTIIIVTHDLDLLLELADRVIVLEDG 210
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
1818-2027 |
2.04e-47 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 169.32 E-value: 2.04e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYRGQRspAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVaQEPSAAHRSMGYC 1897
Cdd:cd03268 1 LKTNDLTKTYGKKR--VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSY-QKNIEALRRIGAL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1898 PQSDAIFDLLTGREHLELFARLRGVPEAQVAQTalsgLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEP 1977
Cdd:cd03268 78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEV----LDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEP 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 564358039 1978 TTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:cd03268 154 TNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGK 203
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
820-1020 |
3.63e-47 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 169.44 E-value: 3.63e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 820 PALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDV-QTNMAAIRPHLGICPQY--NVLFdMLTV 896
Cdd:COG1122 15 PALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDItKKNLRELRRKVGLVFQNpdDQLF-APTV 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 897 EEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGI 976
Cdd:COG1122 94 EEDVAFGPENLGLPREEIRERVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAMEPEVLVLDEPTAGLDPRGRREL 173
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 564358039 977 WELLLKY-REGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSP 1020
Cdd:COG1122 174 LELLKRLnKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTP 218
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
1817-2008 |
1.56e-46 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 166.89 E-value: 1.56e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTKVyRGQRsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAHRSMGY 1896
Cdd:COG4133 2 MLEAENLSCR-RGER-LLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAREDYRRRLAY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1897 CPQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALsgLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDE 1976
Cdd:COG4133 80 LGHADGLKPELTVRENLRFWAALYGLRADREAIDEA--LEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLDE 157
|
170 180 190
....*....|....*....|....*....|..
gi 564358039 1977 PTTGMDPSARRFLWNNLLSVVREGRSVVLTSH 2008
Cdd:COG4133 158 PFTALDAAGVALLAELIAAHLARGGAVLLTTH 189
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
1818-2032 |
7.84e-46 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 164.76 E-value: 7.84e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYRgqRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAqepSAAHRSMGYC 1897
Cdd:cd03269 1 LEVENVTKRFG--RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLD---IAARNRIGYL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1898 PQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEP 1977
Cdd:cd03269 76 PEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEP 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 564358039 1978 TTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGRFRCLG 2032
Cdd:cd03269 156 FSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
805-1014 |
1.11e-44 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 161.62 E-value: 1.11e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFRGspQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIRpHLGIC 884
Cdd:cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALR-RIGAL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 885 PQYNVLFDMLTVEEHVWFYGRLKGVSaaaiDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEP 964
Cdd:cd03268 78 IEAPGFYPNLTARENLRLLARLLGIR----KKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEP 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 564358039 965 TAGVDPASRRGIWELLLKYR-EGRTLILSTHHLDEAELLGDRVAMVASGSL 1014
Cdd:cd03268 154 TNGLDPDGIKELRELILSLRdQGITVLISSHLLSEIQKVADRIGIINKGKL 204
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1788-2027 |
1.29e-44 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 166.16 E-value: 1.29e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1788 SRLPPPLGEEDEDVVRERERVTKGATQGDVLVLRDLTKVYRGQrsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTG 1867
Cdd:PRK13536 12 RRLELSPIERKHQGISEAKASIPGSMSTVAIDLAGVSKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1868 DTLPSSGEAVLAGHNVAQEPSAAHRSMGYCPQSDAIFDLLTGREHLELFARLRGVPEAQVaQTALSGLVRLG-LPSYADR 1946
Cdd:PRK13536 90 MTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREI-EAVIPSLLEFArLESKADA 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1947 PAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNG 2026
Cdd:PRK13536 169 RVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAG 248
|
.
gi 564358039 2027 R 2027
Cdd:PRK13536 249 R 249
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
805-1012 |
9.51e-44 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 159.07 E-value: 9.51e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFR--GSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIRPHLG 882
Cdd:cd03266 2 ITADALTKRFRdvKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 883 ICPQYNVLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMD 962
Cdd:cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLD 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 564358039 963 EPTAGVDPASRRGIWELLLKYRE-GRTLILSTHHLDEAELLGDRVAMVASG 1012
Cdd:cd03266 162 EPTTGLDVMATRALREFIRQLRAlGKCILFSTHIMQEVERLCDRVVVLHRG 212
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
803-1000 |
2.20e-43 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 157.64 E-value: 2.20e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 803 PGVSIRGLKKHFRGspQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIRPHLG 882
Cdd:COG4133 1 MMLEAENLSCRRGE--RLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAREDYRRRLA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 883 ICPQYNVLFDMLTVEEHVWFYGRLKGVSAAAIDSEQehLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMD 962
Cdd:COG4133 79 YLGHADGLKPELTVRENLRFWAALYGLRADREAIDE--ALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLD 156
|
170 180 190
....*....|....*....|....*....|....*....
gi 564358039 963 EPTAGVDPASRRGIWELLLKYRE-GRTLILSTHHLDEAE 1000
Cdd:COG4133 157 EPFTALDAAGVALLAELIAAHLArGGAVLLTTHQPLELA 195
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
822-966 |
1.78e-42 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 152.80 E-value: 1.78e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 822 LRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQ-TNMAAIRPHLGICPQYNVLFDMLTVEEHV 900
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTdDERKSLRKEIGYVFQDPQLFPRLTVRENL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 901 WFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDT----QTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTA 966
Cdd:pfam00005 81 RLGLLLKGLSKREKDARAEEALEKLGLGDLADRpvgeRPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
803-1012 |
3.84e-42 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 156.02 E-value: 3.84e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 803 PGVSIRGLKKHF--RGSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVqtnmAAIRPH 880
Cdd:COG1116 6 PALELRGVSKRFptGGGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPV----TGPGPD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 881 LGICPQYNVLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVI 960
Cdd:COG1116 82 RGVVFQEPALLPWLTVLDNVALGLELRGVPKAERRERARELLELVGLAGFEDAYPHQLSGGMRQRVAIARALANDPEVLL 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 564358039 961 MDEPTAGVDPASRRGIWELLLKY--REGRTLILSTHHLDEAELLGDRVAMVASG 1012
Cdd:COG1116 162 MDEPFGALDALTRERLQDELLRLwqETGKTVLFVTHDVDEAVFLADRVVVLSAR 215
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
805-1020 |
1.13e-41 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 153.81 E-value: 1.13e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFRGspQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDV----QTNMAAIRPH 880
Cdd:cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDIsglsEAELYRLRRR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 881 LGICPQYNVLFDMLTVEEHVWF----YGRLKgvsaaaidseqEHLIRD--------VGLIPKRDTQTRHLSGGMQRKLSV 948
Cdd:cd03261 79 MGMLFQSGALFDSLTVFENVAFplreHTRLS-----------EEEIREivlekleaVGLRGAEDLYPAELSGGMKKRVAL 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564358039 949 AIAFVGGSRVVIMDEPTAGVDPASRRGIWELLLKYRE--GRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSP 1020
Cdd:cd03261 148 ARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKelGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTP 221
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
805-1007 |
2.52e-41 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 152.24 E-value: 2.52e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFR--GSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQtnmaAIRPHLG 882
Cdd:cd03293 1 LEVRNVSKTYGggGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVT----GPGPDRG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 883 ICPQYNVLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMD 962
Cdd:cd03293 77 YVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLD 156
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 564358039 963 EPTAGVDPASRRGIWELLLK--YREGRTLILSTHHLDEAELLGDRVA 1007
Cdd:cd03293 157 EPFSALDALTREQLQEELLDiwRETGKTVLLVTHDIDEAVFLADRVV 203
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
805-1014 |
1.61e-40 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 152.57 E-value: 1.61e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFrGSpQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQtnmAAIRPHLGIC 884
Cdd:COG4152 2 LELKGLTKRF-GD-KTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLD---PEDRRRIGYL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 885 PQYNVLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEP 964
Cdd:COG4152 77 PEERGLYPKMKVGEQLVYLARLKGLSKAEAKRRADEWLERLGLGDRANKKVEELSKGNQQKVQLIAALLHDPELLILDEP 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 564358039 965 TAGVDPASRRGIWELLLKYRE-GRTLILSTHHLDEAELLGDRVAM------VASGSL 1014
Cdd:COG4152 157 FSGLDPVNVELLKDVIRELAAkGTTVIFSSHQMELVEELCDRIVIinkgrkVLSGSV 213
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
805-1012 |
4.51e-40 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 148.20 E-value: 4.51e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFRgsPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQtnmAAIRPHLGIC 884
Cdd:cd03269 1 LEVENVTKRFG--RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLD---IAARNRIGYL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 885 PQYNVLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEP 964
Cdd:cd03269 76 PEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEP 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 564358039 965 TAGVDPASRRGIWELLLKY-REGRTLILSTHHLDEAELLGDRVAMVASG 1012
Cdd:cd03269 156 FSGLDPVNVELLKDVIRELaRAGKTVILSTHQMELVEELCDRVLLLNKG 204
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1817-2121 |
2.95e-39 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 149.85 E-value: 2.95e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTKVYR-GQRSP------------------AVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAV 1877
Cdd:COG4586 1 IIEVENLSKTYRvYEKEPglkgalkglfrreyreveAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1878 LAGHNVAQEpSAAHRS-----MGycpQ-SDAIFDlLTGREHLELFARLRGVPEAQVAQTaLSGLV-RLGLPSYADRPAGT 1950
Cdd:COG4586 81 VLGYVPFKR-RKEFARrigvvFG---QrSQLWWD-LPAIDSFRLLKAIYRIPDAEYKKR-LDELVeLLDLGELLDTPVRQ 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1951 YSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSA----RRFL--WNNllsvvREGRSVVLTSHSMEECEALCTRLAIMV 2024
Cdd:COG4586 155 LSLGQRMRCELAAALLHRPKILFLDEPTIGLDVVSkeaiREFLkeYNR-----ERGTTILLTSHDMDDIEALCDRVIVID 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 2025 NGRFRCLGSAQHLKSRFGAGHTLTLRvpPDQPEPAIAFivttFPDAELREVHGSRLRFQLPPggGCKLARVFRELAAQgk 2104
Cdd:COG4586 230 HGRIIYDGSLEELKERFGPYKTIVLE--LAEPVPPLEL----PRGGEVIEREGNRVRLEVDP--RESLAEVLARLLAR-- 299
|
330
....*....|....*..
gi 564358039 2105 aHGVEDFSVSQTTLEEV 2121
Cdd:COG4586 300 -YPVRDLTIEEPPIEEV 315
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
1818-2027 |
1.01e-38 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 144.58 E-value: 1.01e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYRGQRspAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPsAAHRSMGYC 1897
Cdd:cd03259 1 LELKGLSKTYGSVR--ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP-PERRNIGMV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1898 PQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEP 1977
Cdd:cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEP 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 564358039 1978 TTGMDPSARRFLWNNLLSVVRE-GRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:cd03259 158 LSALDAKLREELREELKELQRElGITTIYVTHDQEEALALADRIAVMNEGR 208
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
799-1029 |
1.13e-38 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 147.64 E-value: 1.13e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 799 PGLVPGVSIRGLKKHFrgSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIR 878
Cdd:PRK13537 2 PMSVAPIDFRNVEKRY--GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHAR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 879 PHLGICPQYNVLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRV 958
Cdd:PRK13537 80 QRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDV 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564358039 959 VIMDEPTAGVDPASRRGIWELLLK-YREGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSP-LFLRRHLGC 1029
Cdd:PRK13537 160 LVLDEPTTGLDPQARHLMWERLRSlLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPhALIESEIGC 232
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
803-1020 |
1.21e-38 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 145.62 E-value: 1.21e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 803 PGVSIRGLKKHFRGspQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNmaaiRPHLG 882
Cdd:COG1121 5 PAIELENLTVSYGG--RPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPRRA----RRRIG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 883 ICPQY-NVLFDM-LTVEE--------HVWFYGRLKGVSAAAIDseqeHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAF 952
Cdd:COG1121 79 YVPQRaEVDWDFpITVRDvvlmgrygRRGLFRRPSRADREAVD----EALERVGLEDLADRPIGELSGGQQQRVLLARAL 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564358039 953 VGGSRVVIMDEPTAGVDPASRRGIWELLLKYR-EGRTLILSTHHLDEAELLGDRVAMVAsGSLCCCGSP 1020
Cdd:COG1121 155 AQDPDLLLLDEPFAGVDAATEEALYELLRELRrEGKTILVVTHDLGAVREYFDRVLLLN-RGLVAHGPP 222
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
1818-2027 |
4.36e-38 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 143.73 E-value: 4.36e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYRGQRspAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSA--AHRSMG 1895
Cdd:cd03219 1 LEVRGLTKRFGGLV--ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHeiARLGIG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1896 YCPQSDAIFDLLTGREHLELFARLRGVP----------EAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALAL 1965
Cdd:cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSglllararreEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARAL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564358039 1966 VGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:cd03219 159 ATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGR 220
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
803-1014 |
4.82e-38 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 143.26 E-value: 4.82e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 803 PGVSIRGLKKHFR--GSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQT----NMAA 876
Cdd:COG1136 3 PLLELRNLTKSYGtgEGEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSlserELAR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 877 IRP-HLGICPQ-YNvLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGG-MQRklsVAIA-- 951
Cdd:COG1136 83 LRRrHIGFVFQfFN-LLPELTALENVALPLLLAGVSRKERRERARELLERVGLGDRLDHRPSQLSGGqQQR---VAIAra 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564358039 952 FVGGSRVVIMDEPTAGVDPASRRGIWELLLKY--REGRTLILSTHHLDEAElLGDRVAMVASGSL 1014
Cdd:COG1136 159 LVNRPKLILADEPTGNLDSKTGEEVLELLRELnrELGTTIVMVTHDPELAA-RADRVIRLRDGRI 222
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
1818-2027 |
5.43e-38 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 142.86 E-value: 5.43e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYRGQRsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQE-PSAAHRSMGY 1896
Cdd:COG1122 1 IELENLSFSYPGGT-PALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKnLRELRRKVGL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1897 CPQS--DAIF------DLLTGREHLelfarlrGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGD 1968
Cdd:COG1122 80 VFQNpdDQLFaptveeDVAFGPENL-------GLPREEIRERVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAME 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 564358039 1969 PAVVFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:COG1122 153 PEVLVLDEPTAGLDPRGRRELLELLKRLNKEGKTVIIVTHDLDLVAELADRVIVLDDGR 211
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
1819-2027 |
5.96e-38 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 142.22 E-value: 5.96e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1819 VLRDLTKVYRGQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAHRSM-GYC 1897
Cdd:cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKvGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1898 PQ-SDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDE 1976
Cdd:cd03225 81 FQnPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDE 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 564358039 1977 PTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:cd03225 161 PTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
805-1012 |
9.06e-38 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 141.89 E-value: 9.06e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFRGspQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVqTNMAAIRPHLGIC 884
Cdd:cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDV-TGVPPERRNIGMV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 885 PQYNVLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEP 964
Cdd:cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEP 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 564358039 965 TAGVDPASRRGIWELLLKYRE--GRTLILSTHHLDEAELLGDRVAMVASG 1012
Cdd:cd03259 158 LSALDAKLREELREELKELQRelGITTIYVTHDQEEALALADRIAVMNEG 207
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
803-1020 |
1.02e-37 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 142.81 E-value: 1.02e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 803 PGVSIRGLKKHFRGspQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQT----NMAAIR 878
Cdd:COG1127 4 PMIEVRNLTKSFGD--RVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGlsekELYELR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 879 PHLGICPQYNVLFDMLTVEEHVWFYGR-LKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKlsVAIAfvggsR 957
Cdd:COG1127 82 RRIGMLFQGGALFDSLTVFENVAFPLReHTDLSEAEIRELVLEKLELVGLPGAADKMPSELSGGMRKR--VALA-----R 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564358039 958 VVIM-------DEPTAGVDPASRRGIWELLLKYRE--GRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSP 1020
Cdd:COG1127 155 ALALdpeillyDEPTAGLDPITSAVIDELIRELRDelGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTP 226
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
806-1020 |
1.92e-37 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 141.81 E-value: 1.92e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 806 SIRGLKKHFRGSPqpALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIRPHLGICP 885
Cdd:cd03219 2 EVRGLTKRFGGLV--ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 886 --QYNVLFDMLTVEEHV----WFYGRLKGVSAAAIDSEQEH------LIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFV 953
Cdd:cd03219 80 tfQIPRLFPELTVLENVmvaaQARTGSGLLLARARREEREAreraeeLLERVGLADLADRPAGELSYGQQRRLEIARALA 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564358039 954 GGSRVVIMDEPTAGVDPASRRGIWELLLKYRE-GRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSP 1020
Cdd:cd03219 160 TDPKLLLLDEPAAGLNPEETEELAELIRELRErGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTP 227
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
794-1029 |
2.64e-37 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 144.59 E-value: 2.64e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 794 VEEPPPGLVPGVSIR--GLKKHFRGspQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQ 871
Cdd:PRK13536 29 AKASIPGSMSTVAIDlaGVSKSYGD--KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVP 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 872 TNMAAIRPHLGICPQYNVLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIA 951
Cdd:PRK13536 107 ARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARA 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 952 FVGGSRVVIMDEPTAGVDPASRRGIWELLLK-YREGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSPLFL-RRHLGC 1029
Cdd:PRK13536 187 LINDPQLLILDEPTTGLDPHARHLIWERLRSlLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALiDEHIGC 266
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
805-1014 |
3.40e-37 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 140.32 E-value: 3.40e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFRGS--PQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQ----TNMAAIR 878
Cdd:cd03255 1 IELKNLSKTYGGGgeKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISklseKELAAFR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 879 -PHLGICPQ-YNVLfDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGS 956
Cdd:cd03255 81 rRHIGFVFQsFNLL-PDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDP 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 957 RVVIMDEPTAGVDPASRRGIWELLLKYRE--GRTLILSTHHLDEAElLGDRVAMVASGSL 1014
Cdd:cd03255 160 KIILADEPTGNLDSETGKEVMELLRELNKeaGTTIVVVTHDPELAE-YADRIIELRDGKI 218
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
806-1012 |
4.35e-37 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 137.76 E-value: 4.35e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 806 SIRGLKKHFRGspQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDV-QTNMAAIRPHLGIC 884
Cdd:cd00267 1 EIENLSFRYGG--RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIaKLPLEELRRRIGYV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 885 PQynvlfdmltveehvwfygrlkgvsaaaidseqehlirdvglipkrdtqtrhLSGGMQRKLSVAIAFVGGSRVVIMDEP 964
Cdd:cd00267 79 PQ---------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEP 107
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 564358039 965 TAGVDPASRRGIWELLLKY-REGRTLILSTHHLDEAELLGDRVAMVASG 1012
Cdd:cd00267 108 TSGLDPASRERLLELLRELaEEGRTVIIVTHDPELAELAADRVIVLKDG 156
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
1818-2037 |
7.76e-36 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 137.43 E-value: 7.76e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYRGQRsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNV-AQEPSAAHRSMGY 1896
Cdd:cd03295 1 IEFENVTKRYGGGK-KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIrEQDPVELRRKIGY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1897 CPQSDAIFDLLTGREHLELFARLRGVPEAQVAQTA--LSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFL 1974
Cdd:cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERAdeLLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLM 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564358039 1975 DEPTTGMDPSARRFLWNNLLSVVRE-GRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHL 2037
Cdd:cd03295 160 DEPFGALDPITRDQLQEEFKRLQQElGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
806-1020 |
1.88e-35 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 136.71 E-value: 1.88e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 806 SIRGLKKHFRGSPqpALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVqTNMAAI-RPHLGIC 884
Cdd:COG0411 6 EVRGLTKRFGGLV--AVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDI-TGLPPHrIARLGIA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 885 -----PQynvLFDMLTVEEHV---------------WFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQR 944
Cdd:COG0411 83 rtfqnPR---LFPELTVLENVlvaaharlgrgllaaLLRLPRARREEREARERAEELLERVGLADRADEPAGNLSYGQQR 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564358039 945 KLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELLLKYRE--GRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSP 1020
Cdd:COG0411 160 RLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDerGITILLIEHDMDLVMGLADRIVVLDFGRVIAEGTP 237
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
1817-2027 |
2.76e-35 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 136.32 E-value: 2.76e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTKVYRGQRspAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSA--AHRSM 1894
Cdd:COG0411 4 LLEVRGLTKRFGGLV--AVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITGLPPHriARLGI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1895 GYCPQSDAIFDLLTGREHLEL----------FARLRGVP-----EAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKL 1959
Cdd:COG0411 82 ARTFQNPRLFPELTVLENVLVaaharlgrglLAALLRLPrarreEREARERAEELLERVGLADRADEPAGNLSYGQQRRL 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564358039 1960 ATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVRE-GRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:COG0411 162 EIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDErGITILLIEHDMDLVMGLADRIVVLDFGR 230
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
784-1020 |
5.54e-35 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 141.96 E-value: 5.54e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 784 APAPQDPKVLVEEPPPGLVPGVSIRGLKKHF---RGSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSS 860
Cdd:COG1123 240 VPRLGAARGRAAPAAAAAEPLLEVRNLSKRYpvrGKGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTS 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 861 GSASILGHDVQT----NMAAIRPHLGICPQ--YNVLFDMLTVEEHVWFYGRLKGV-SAAAIDSEQEHLIRDVGLIPkrDT 933
Cdd:COG1123 320 GSILFDGKDLTKlsrrSLRELRRRVQMVFQdpYSSLNPRMTVGDIIAEPLRLHGLlSRAERRERVAELLERVGLPP--DL 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 934 QTRH---LSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELLLKYRE--GRTLILSTHHLDEAELLGDRVAM 1008
Cdd:COG1123 398 ADRYpheLSGGQRQRVAIARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRelGLTYLFISHDLAVVRYIADRVAV 477
|
250
....*....|..
gi 564358039 1009 VASGSLCCCGSP 1020
Cdd:COG1123 478 MYDGRIVEDGPT 489
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
819-1012 |
5.56e-35 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 133.81 E-value: 5.56e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 819 QPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVqtnmAAIRPHLGICPQ-YNVLFDM-LTV 896
Cdd:cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPL----EKERKRIGYVPQrRSIDRDFpISV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 897 EE--------HVWFYGRLKGVSAAAIDseqeHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGV 968
Cdd:cd03235 88 RDvvlmglygHKGLFRRLSKADKAKVD----EALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGV 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 564358039 969 DPASRRGIWELLLKYR-EGRTLILSTHHLDEAELLGDRVAM-----VASG 1012
Cdd:cd03235 164 DPKTQEDIYELLRELRrEGMTILVVTHDLGLVLEYFDRVLLlnrtvVASG 213
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
1818-2037 |
6.83e-35 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 134.21 E-value: 6.83e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYRgqRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEP--SAAHRSMG 1895
Cdd:cd03218 1 LRAENLSKRYG--KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPmhKRARLGIG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1896 YCPQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLD 1975
Cdd:cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLD 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564358039 1976 EPTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHL 2037
Cdd:cd03218 159 EPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEI 220
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1817-2036 |
8.20e-35 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 134.45 E-value: 8.20e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTKVYRGQrsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQepsaAHRSMGY 1896
Cdd:COG1121 6 AIELENLTVSYGGR--PVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPRR----ARRRIGY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1897 CPQSDAI--------FDL-LTGR-EHLELFARLRGVPEAQVAQtALSglvRLGLPSYADRPAGTYSGGNKRKLATALALV 1966
Cdd:COG1121 80 VPQRAEVdwdfpitvRDVvLMGRyGRRGLFRRPSRADREAVDE-ALE---RVGLEDLADRPIGELSGGQQQRVLLARALA 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1967 GDPAVVFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLaIMVNGRFRCLGSAQH 2036
Cdd:COG1121 156 QDPDLLLLDEPFAGVDAATEEALYELLRELRREGKTILVVTHDLGAVREYFDRV-LLLNRGLVAHGPPEE 224
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
805-1026 |
8.57e-35 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 134.35 E-value: 8.57e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFRGSpQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDV-QTNMAAIRPHLGI 883
Cdd:cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIrEQDPVELRRKIGY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 884 CPQYNVLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPK--RDTQTRHLSGGMQRKLSVAIAFVGGSRVVIM 961
Cdd:cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAefADRYPHELSGGQQQRVGVARALAADPPLLLM 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564358039 962 DEPTAGVDPASRRGIWELLLKYRE--GRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSPLFLRRH 1026
Cdd:cd03295 160 DEPFGALDPITRDQLQEEFKRLQQelGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
805-1012 |
1.00e-34 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 131.35 E-value: 1.00e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFRGSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQT-NMAAIRPHLGI 883
Cdd:cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDlDLESLRKNIAY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 884 CPQYNVLFDMlTVEEHVwfygrlkgvsaaaidseqehlirdvglipkrdtqtrhLSGGMQRKLSVAIAFVGGSRVVIMDE 963
Cdd:cd03228 81 VPQDPFLFSG-TIRENI-------------------------------------LSGGQRQRIAIARALLRDPPILILDE 122
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 564358039 964 PTAGVDPASRRGIWELLLKYREGRTLILSTHHLDEAElLGDRVAMVASG 1012
Cdd:cd03228 123 ATSALDPETEALILEALRALAKGKTVIVIAHRLSTIR-DADRIIVLDDG 170
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
1820-2027 |
5.05e-34 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 128.90 E-value: 5.05e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1820 LRDLTKVYRGQrsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPS-AAHRSMGYCP 1898
Cdd:cd00267 2 IENLSFRYGGR--TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLeELRRRIGYVP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1899 QsdaifdlltgrehlelfarlrgvpeaqvaqtalsglvrlglpsyadrpagtYSGGNKRKLATALALVGDPAVVFLDEPT 1978
Cdd:cd00267 80 Q---------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPT 108
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 564358039 1979 TGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:cd00267 109 SGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
806-1012 |
1.74e-33 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 129.86 E-value: 1.74e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 806 SIRGLKKHFRGSPqpALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVqTNMAAI-RPHLGI- 883
Cdd:cd03224 2 EVENLNAGYGKSQ--ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDI-TGLPPHeRARAGIg 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 884 -CPQYNVLFDMLTVEE--HVWFYGRLKGVSAAAIDseqehliRDVGLIP----KRDTQTRHLSGGMQRKLSVAIAFVGGS 956
Cdd:cd03224 79 yVPEGRRIFPELTVEEnlLLGAYARRRAKRKARLE-------RVYELFPrlkeRRKQLAGTLSGGEQQMLAIARALMSRP 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 564358039 957 RVVIMDEPTAGVDPASRRGIWELLLKYR-EGRTLILSTHHLDEAELLGDRVAMVASG 1012
Cdd:cd03224 152 KLLLLDEPSEGLAPKIVEEIFEAIRELRdEGVTILLVEQNARFALEIADRAYVLERG 208
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
784-1032 |
5.34e-33 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 137.20 E-value: 5.34e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 784 APAPQDPKvlvEEPPPGLVPGVSIRGLKKHFRGSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSA 863
Cdd:COG4987 316 PPAVTEPA---EPAPAPGGPSLELEDVSFRYPGAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSI 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 864 SILGHDVQT-NMAAIRPHLGICPQYNVLFDMlTVEEHVwfygRLkgVSAAAIDSEQEHLIRDVGL------IPKR-DTQT 935
Cdd:COG4987 393 TLGGVDLRDlDEDDLRRRIAVVPQRPHLFDT-TLRENL----RL--ARPDATDEELWAALERVGLgdwlaaLPDGlDTWL 465
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 936 ----RHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELLLKYREGRTLILSTHHLDEAElLGDRVAMVAS 1011
Cdd:COG4987 466 geggRRLSGGERRRLALARALLRDAPILLLDEPTEGLDAATEQALLADLLEALAGRTVLLITHRLAGLE-RMDRILVLED 544
|
250 260
....*....|....*....|.
gi 564358039 1012 GSLCCCGSPLFLRRHlgCGYY 1032
Cdd:COG4987 545 GRIVEQGTHEELLAQ--NGRY 563
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1818-2041 |
5.96e-33 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 132.53 E-value: 5.96e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYRGQrsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPsAAHRSMGYC 1897
Cdd:COG3842 6 LELENVSKRYGDV--TALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTGLP-PEKRNVGMV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1898 PQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEP 1977
Cdd:COG3842 83 FQDYALFPHLTVAENVAFGLRMRGVPKAEIRARVAELLELVGLEGLADRYPHQLSGGQQQRVALARALAPEPRVLLLDEP 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564358039 1978 TTGMDPSARRFLWNNLLSVVRE-GRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHL----KSRF 2041
Cdd:COG3842 163 LSALDAKLREEMREELRRLQRElGITFIYVTHDQEEALALADRIAVMNDGRIEQVGTPEEIyerpATRF 231
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
803-1020 |
8.30e-33 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 131.76 E-value: 8.30e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 803 PGVSIRGLKKHFRGspQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVqTNMAAIRPHLG 882
Cdd:COG3842 4 PALELENVSKRYGD--VTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDV-TGLPPEKRNVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 883 ICPQYNVLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGG-MQRklsVAIA--FVGGSRVV 959
Cdd:COG3842 81 MVFQDYALFPHLTVAENVAFGLRMRGVPKAEIRARVAELLELVGLEGLADRYPHQLSGGqQQR---VALAraLAPEPRVL 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564358039 960 IMDEPTAGVDPASRRGIWELLLKY--REGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSP 1020
Cdd:COG3842 158 LLDEPLSALDAKLREEMREELRRLqrELGITFIYVTHDQEEALALADRIAVMNDGRIEQVGTP 220
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
803-1020 |
1.95e-32 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 134.26 E-value: 1.95e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 803 PGVSIRGLKKHFRGSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPS---SGSASILGHDVQTNMAAIR- 878
Cdd:COG1123 3 PLLEVRDLSVRYPGGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgriSGEVLLDGRDLLELSEALRg 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 879 PHLGICPQ-YNVLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSR 957
Cdd:COG1123 83 RRIGMVFQdPMTQLNPVTVGDQIAEALENLGLSRAEARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMALALDPD 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564358039 958 VVIMDEPTAGVDPASRRGIWELL--LKYREGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSP 1020
Cdd:COG1123 163 LLIADEPTTALDVTTQAEILDLLreLQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPP 227
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1817-2089 |
2.71e-32 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 133.88 E-value: 2.71e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTKVYRGQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTG---DTLPSSGEAVLAGHNVAQEPSAAH-R 1892
Cdd:COG1123 4 LLEVRDLSVRYPGGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGllpHGGRISGEVLLDGRDLLELSEALRgR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1893 SMGYCPQS-DAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAV 1971
Cdd:COG1123 84 RIGMVFQDpMTQLNPVTVGDQIAEALENLGLSRAEARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMALALDPDL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1972 VFLDEPTTGMDPSARRFLWNNLLSVVRE-GRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHLKSRFGAghtltLR 2050
Cdd:COG1123 164 LIADEPTTALDVTTQAEILDLLRELQRErGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEILAAPQA-----LA 238
|
250 260 270
....*....|....*....|....*....|....*....
gi 564358039 2051 VPPDQPEPAIAFIVTTFPDAELREVHGSRLRFQLPPGGG 2089
Cdd:COG1123 239 AVPRLGAARGRAAPAAAAAEPLLEVRNLSKRYPVRGKGG 277
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
1818-2039 |
2.95e-32 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 126.39 E-value: 2.95e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYRGqrSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSA--AHRSMG 1895
Cdd:cd03224 1 LEVENLNAGYGK--SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHerARAGIG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1896 YCPQSDAIFDLLTGREHLEL--FARLRGVPEAQVAQtALSGLVRLGlpSYADRPAGTYSGGNKRKLATALALVGDPAVVF 1973
Cdd:cd03224 79 YVPEGRRIFPELTVEENLLLgaYARRRAKRKARLER-VYELFPRLK--ERRKQLAGTLSGGEQQMLAIARALMSRPKLLL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564358039 1974 LDEPTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHLKS 2039
Cdd:cd03224 156 LDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
805-1014 |
4.09e-32 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 126.14 E-value: 4.09e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKkHFRGSPQpALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFP-----PSSGSASILGHDV---QTNMAA 876
Cdd:cd03260 1 IELRDLN-VYYGDKH-ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDlipgaPDEGEVLLDGKDIydlDVDVLE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 877 IRPHLGICPQYNVLFDMlTVEEHVWFYGRLKGV-SAAAIDSEQEHLIRDVGLIP--KRDTQTRHLSGGMQRKLSVAIAFV 953
Cdd:cd03260 79 LRRRVGMVFQKPNPFPG-SIYDNVAYGLRLHGIkLKEELDERVEEALRKAALWDevKDRLHALGLSGGQQQRLCLARALA 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564358039 954 GGSRVVIMDEPTAGVDPASRRGIWELLLKYREGRTLILSTHHLDEAELLGDRVAMVASGSL 1014
Cdd:cd03260 158 NEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRL 218
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
1818-2027 |
9.87e-32 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 124.52 E-value: 9.87e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYRGQ--RSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAA----- 1890
Cdd:cd03255 1 IELKNLSKTYGGGgeKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKElaafr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1891 HRSMGYCPQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPA 1970
Cdd:cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 564358039 1971 VVFLDEPTTGMDPSARRFLWNNLLSVVRE-GRSVVLTSHSMEEcEALCTRLAIMVNGR 2027
Cdd:cd03255 161 IILADEPTGNLDSETGKEVMELLRELNKEaGTTIVVVTHDPEL-AEYADRIIELRDGK 217
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
807-1012 |
1.22e-31 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 123.07 E-value: 1.22e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 807 IRGLKKHFRGspQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIRPH---LGI 883
Cdd:cd03229 3 LKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLrrrIGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 884 CPQYNVLFDMLTVEEHVWFygrlkgvsaaaidseqehlirdvglipkrdtqtrHLSGGMQRKLSVAIAFVGGSRVVIMDE 963
Cdd:cd03229 81 VFQDFALFPHLTVLENIAL----------------------------------GLSGGQQQRVALARALAMDPDVLLLDE 126
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 564358039 964 PTAGVDPASRRGIWELL--LKYREGRTLILSTHHLDEAELLGDRVAMVASG 1012
Cdd:cd03229 127 PTSALDPITRREVRALLksLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
1817-2037 |
1.37e-31 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 124.76 E-value: 1.37e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTKVYRGQRspAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEP--SAAHRSM 1894
Cdd:COG1137 3 TLEAENLVKSYGKRT--VVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHLPmhKRARLGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1895 GYCPQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFL 1974
Cdd:COG1137 81 GYLPQEASIFRKLTVEDNILAVLELRKLSKKEREERLEELLEEFGITHLRKSKAYSLSGGERRRVEIARALATNPKFILL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564358039 1975 DEPTTGMDPsarrflwnnlLSV------VRE----GRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHL 2037
Cdd:COG1137 161 DEPFAGVDP----------IAVadiqkiIRHlkerGIGVLITDHNVRETLGICDRAYIISEGKVLAEGTPEEI 223
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
805-1020 |
1.43e-31 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 125.16 E-value: 1.43e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFRGspQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQT-NMAAIRPHLGI 883
Cdd:COG1120 2 LEAENLSVGYGG--RPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASlSRRELARRIAY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 884 CPQYNVLFDMLTVEE--------HVWFYGRLKGVSAAAIdseqEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGG 955
Cdd:COG1120 80 VPQEPPAPFGLTVRElvalgrypHLGLFGRPSAEDREAV----EEALERTGLEHLADRPVDELSGGERQRVLIARALAQE 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564358039 956 SRVVIMDEPTAGVDPASRRGIWELL--LKYREGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSP 1020
Cdd:COG1120 156 PPLLLLDEPTSHLDLAHQLEVLELLrrLARERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPP 222
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
1817-2035 |
3.09e-31 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 124.39 E-value: 3.09e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTKVYRGQrsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAH-RSMG 1895
Cdd:COG1120 1 MLEAENLSVGYGGR--PVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSRRELaRRIA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1896 YCPQS-DAIFDL------LTGRE-HLELFARLRGVPEAQVAQTalsgLVRLGLPSYADRPAGTYSGGNKRKLATALALVG 1967
Cdd:COG1120 79 YVPQEpPAPFGLtvrelvALGRYpHLGLFGRPSAEDREAVEEA----LERTGLEHLADRPVDELSGGERQRVLIARALAQ 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564358039 1968 DPAVVFLDEPTTGMDPSARRflwnNLLSVVRE-----GRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQ 2035
Cdd:COG1120 155 EPPLLLLDEPTSHLDLAHQL----EVLELLRRlarerGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPE 223
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
805-1007 |
4.44e-31 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 123.00 E-value: 4.44e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHF--RGSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAI----R 878
Cdd:cd03257 2 LEVKNLSVSFptGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLrkirR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 879 PHLGICPQ--YNVLFDMLTVEEHVW--FYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRH-LSGGMQRKLSVAIAFV 953
Cdd:cd03257 82 KEIQMVFQdpMSSLNPRMTIGEQIAepLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHeLSGGQRQRVAIARALA 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 564358039 954 GGSRVVIMDEPTAGVDPASRRGIWELL--LKYREGRTLILSTHHLDEAELLGDRVA 1007
Cdd:cd03257 162 LNPKLLIADEPTSALDVSVQAQILDLLkkLQEELGLTLLFITHDLGVVAKIADRVA 217
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
1817-2037 |
7.95e-31 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 122.77 E-value: 7.95e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTKVYRGQrsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEP--SAAHRSM 1894
Cdd:TIGR04406 1 TLVAENLIKSYKKR--KVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDITHLPmhERARLGI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1895 GYCPQSDAIFDLLTGREHLELFARLRG-VPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVF 1973
Cdd:TIGR04406 79 GYLPQEASIFRKLTVEENIMAVLEIRKdLDRAEREERLEALLEEFQISHLRDNKAMSLSGGERRRVEIARALATNPKFIL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564358039 1974 LDEPTTGMDPSARRFLwNNLLSVVRE-GRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHL 2037
Cdd:TIGR04406 159 LDEPFAGVDPIAVGDI-KKIIKHLKErGIGVLITDHNVRETLDICDRAYIISDGKVLAEGTPAEI 222
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
1820-2027 |
8.26e-31 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 122.30 E-value: 8.26e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1820 LRDLTKVYRGQRS--PAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQ----EPSAAHRS 1893
Cdd:cd03258 4 LKNVSKVFGDTGGkvTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLlsgkELRKARRR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1894 MGYCPQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVF 1973
Cdd:cd03258 84 IGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLL 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 564358039 1974 LDEPTTGMDPSARRFLWNNLLSVVRE-GRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:cd03258 164 CDEATSALDPETTQSILALLRDINRElGLTIVLITHEMEVVKRICDRVAVMEKGE 218
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
805-1014 |
9.09e-31 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 122.30 E-value: 9.09e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFRGSPQ--PALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQT----NMAAIR 878
Cdd:cd03258 2 IELKNVSKVFGDTGGkvTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLlsgkELRKAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 879 PHLG-ICPQYNvLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSR 957
Cdd:cd03258 82 RRIGmIFQHFN-LLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 564358039 958 VVIMDEPTAGVDPASRRGIWELLLKYRE--GRTLILSTHHLDEAELLGDRVAMVASGSL 1014
Cdd:cd03258 161 VLLCDEATSALDPETTQSILALLRDINRelGLTIVLITHEMEVVKRICDRVAVMEKGEV 219
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1818-2050 |
9.68e-31 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 122.60 E-value: 9.68e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYR--GQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQ-EPSAAHRSM 1894
Cdd:COG1124 2 LEVRNLSVSYGqgGRRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTRrRRKAFRRRV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1895 GYCPQ-SDAIFD-LLTGREHLELFARLRGVPEAQvaQTALSGLVRLGLP-SYADRPAGTYSGGNKRKLATALALVGDPAV 1971
Cdd:COG1124 82 QMVFQdPYASLHpRHTVDRILAEPLRIHGLPDRE--ERIAELLEQVGLPpSFLDRYPHQLSGGQRQRVAIARALILEPEL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1972 VFLDEPTTGMDPSARRFLWNNLLSVVRE-GRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHLKSRFGAGHTLTLR 2050
Cdd:COG1124 160 LLLDEPTSALDVSVQAEILNLLKDLREErGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADLLAGPKHPYTRELL 239
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
1818-2023 |
1.23e-30 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 121.42 E-value: 1.23e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYRGQRSP--AVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGhnvaQEPSAAHRSMG 1895
Cdd:cd03293 1 LEVRNVSKTYGGGGGAvtALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDG----EPVTGPGPDRG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1896 YCPQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLD 1975
Cdd:cd03293 77 YVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLD 156
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 564358039 1976 EPTTGMDPSARRFLWNNLLSVVRE-GRSVVLTSHSMEECEALCTRLAIM 2023
Cdd:cd03293 157 EPFSALDALTREQLQEELLDIWREtGKTVLLVTHDIDEAVFLADRVVVL 205
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1791-2037 |
2.13e-30 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 128.10 E-value: 2.13e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1791 PPPLGEEDEDVVRERERVTKGATQGDVLVLRDLTKVYRGQRS---PAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTG 1867
Cdd:COG1123 234 PQALAAVPRLGAARGRAAPAAAAAEPLLEVRNLSKRYPVRGKggvRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLG 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1868 DTLPSSGEAVLAGHNVA----QEPSAAHRSMGYCPQ--SDAIFDLLTGREHLELFARLRGV-PEAQVAQTALSGLVRLGL 1940
Cdd:COG1123 314 LLRPTSGSILFDGKDLTklsrRSLRELRRRVQMVFQdpYSSLNPRMTVGDIIAEPLRLHGLlSRAERRERVAELLERVGL 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1941 -PSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVRE-GRSVVLTSHSMEECEALCT 2018
Cdd:COG1123 394 pPDLADRYPHELSGGQRQRVAIARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRElGLTYLFISHDLAVVRYIAD 473
|
250
....*....|....*....
gi 564358039 2019 RLAIMVNGRFRCLGSAQHL 2037
Cdd:COG1123 474 RVAVMYDGRIVEDGPTEEV 492
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
1822-2032 |
2.61e-30 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 120.33 E-value: 2.61e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1822 DLTKVYRGQrsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGhnvaQEPSAAHRSMGYCPQSD 1901
Cdd:cd03235 4 DLTVSYGGH--PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG----KPLEKERKRIGYVPQRR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1902 AI--------FDL-LTGRE-HLELFARLRgVPEAQVAQTALSglvRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAV 1971
Cdd:cd03235 78 SIdrdfpisvRDVvLMGLYgHKGLFRRLS-KADKAKVDEALE---RVGLSELADRQIGELSGGQQQRVLLARALVQDPDL 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564358039 1972 VFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRlAIMVNGRFRCLG 2032
Cdd:cd03235 154 LLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDR-VLLLNRTVVASG 213
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
1817-2039 |
3.03e-30 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 120.86 E-value: 3.03e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTkVYRGQrSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSA--AHRSM 1894
Cdd:COG0410 3 MLEVENLH-AGYGG-IHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPPHriARLGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1895 GYCPQSDAIFDLLTGREHLELFARLRGvPEAQVAQTAlsGLV-----RLGlpSYADRPAGTYSGGNKRKLATALALVGDP 1969
Cdd:COG0410 81 GYVPEGRRIFPSLTVEENLLLGAYARR-DRAEVRADL--ERVyelfpRLK--ERRRQRAGTLSGGEQQMLAIGRALMSRP 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1970 AVVFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHLKS 2039
Cdd:COG0410 156 KLLLLDEPSLGLAPLIVEEIFEIIRRLNREGVTILLVEQNARFALEIADRAYVLERGRIVLEGTAAELLA 225
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1817-2038 |
5.93e-30 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 120.08 E-value: 5.93e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTKVYRGQrsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQ----EPSAAHR 1892
Cdd:COG1127 5 MIEVRNLTKSFGDR--VVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGlsekELYELRR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1893 SMGYCPQSDAIFDLLTGREHLELFAR-LRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAV 1971
Cdd:COG1127 83 RIGMLFQGGALFDSLTVFENVAFPLReHTDLSEAEIRELVLEKLELVGLPGAADKMPSELSGGMRKRVALARALALDPEI 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1972 VFLDEPTTGMDP-SARRFlwNNLLSVVRE--GRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHLK 2038
Cdd:COG1127 163 LLYDEPTAGLDPiTSAVI--DELIRELRDelGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEELL 230
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
1818-2028 |
9.99e-30 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 118.38 E-value: 9.99e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTkvYRGQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAHRSM-GY 1896
Cdd:COG4619 1 LELEGLS--FRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAMPPPEWRRQvAY 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1897 CPQSDAIFDLlTGREHLELFARLRGVPEAQvaQTALSGLVRLGLP-SYADRPAGTYSGGNKRKLATALALVGDPAVVFLD 1975
Cdd:COG4619 79 VPQEPALWGG-TVRDNLPFPFQLRERKFDR--ERALELLERLGLPpDILDKPVERLSGGERQRLALIRALLLQPDVLLLD 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 564358039 1976 EPTTGMDPSARRFLWNNLLSVVRE-GRSVVLTSHSMEECEALCTRLAIMVNGRF 2028
Cdd:COG4619 156 EPTSALDPENTRRVEELLREYLAEeGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
1820-2027 |
1.23e-29 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 119.36 E-value: 1.23e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1820 LRDLTKVYRGQRS-------------------PAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAG 1880
Cdd:cd03267 3 VSNLSKSYRVYSKepgligslkslfkrkyrevEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1881 hNVAQEPSAAHRS-----MGycPQSDAIFDlLTGREHLELFARLRGVPEAQVAQTaLSGLVR-LGLPSYADRPAGTYSGG 1954
Cdd:cd03267 83 -LVPWKRRKKFLRrigvvFG--QKTQLWWD-LPVIDSFYLLAAIYDLPPARFKKR-LDELSElLDLEELLDTPVRQLSLG 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564358039 1955 NKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVRE-GRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:cd03267 158 QRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRErGTTVLLTSHYMKDIEALARRVLVIDKGR 231
|
|
| ABC2_membrane_3 |
pfam12698 |
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter ... |
1453-1742 |
1.80e-29 |
|
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family pfam01061.
Pssm-ID: 463674 [Multi-domain] Cd Length: 345 Bit Score: 122.11 E-value: 1.80e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1453 SGREVVRTVAEMRALLSPQPGNTLDRILNNLTQwALGLDARNSLKIWFNNKGWHAMVAFVNrANNGLLRAFLPSGSVRHa 1532
Cdd:pfam12698 59 NLVQYVDSEEEAKEALKNGKIDGLLVIPKGFSK-DLLKGESATVTVYINSSNLLVSKLILN-ALQSLLQQLNASALVLL- 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1533 HSITTLNHPLNLTKEQLSEATLiaSSVDVLVSICVVFAMSFVPASFTLVLIEERITRAKHLQLVSGLPQTLYWLGNFLWD 1612
Cdd:pfam12698 136 LEALSTSAPIPVESTPLFNPQS--GYAYYLVGLILMIIILIGAAIIAVSIVEEKESRIKERLLVSGVSPLQYWLGKILGD 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1613 MCNYLVAVCIVVLIFLAFqqkaYVAPENLPALLLLLLLYGWSITPLMYPASFFFSVPSTAYVVLTCINLFIGInSSMATF 1692
Cdd:pfam12698 214 FLVGLLQLLIILLLLFGI----GIPFGNLGLLLLLFLLYGLAYIALGYLLGSLFKNSEDAQSIIGIVILLLSG-FFGGLF 288
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 564358039 1693 VLELLSDqnlqevsrILKQVFLIFPHFCLGRGLIDMVRNQAMADAFERLG 1742
Cdd:pfam12698 289 PLEDPPS--------FLQWIFSIIPFFSPIDGLLRLIYGDSLWEIAPSLI 330
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
812-1014 |
5.04e-29 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 117.08 E-value: 5.04e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 812 KHFRGSpQPALRGLNLDFYEGHItAFL-GHNGAGKTTTLSILSGLFPPSSGSASILGHDVQT----NMAAIRPHLGICPQ 886
Cdd:COG2884 9 KRYPGG-REALSDVSLEIEKGEF-VFLtGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRlkrrEIPYLRRRIGVVFQ 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 887 -YNVLFDMlTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPT 965
Cdd:COG2884 87 dFRLLPDR-TVYENVALPLRVTGKSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAIARALVNRPELLLADEPT 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 564358039 966 AGVDPASRRGIWELLLKY-REGRTLILSTHHLDEAELLGDRVAMVASGSL 1014
Cdd:COG2884 166 GNLDPETSWEIMELLEEInRRGTTVLIATHDLELVDRMPKRVLELEDGRL 215
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
813-1014 |
5.23e-29 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 116.20 E-value: 5.23e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 813 HFRGSPQP-ALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGsaSILGHDVQTNMAAIRPHLGICPQ---YN 888
Cdd:cd03226 6 SFSYKKGTeILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSG--SILLNGKPIKAKERRKSIGYVMQdvdYQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 889 VLFDmlTVEEHVWFygRLKGVSAAAIDseQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGV 968
Cdd:cd03226 84 LFTD--SVREELLL--GLKELDAGNEQ--AETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGL 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 564358039 969 DPASRRGIWELLLK-YREGRTLILSTHHLDEAELLGDRVAMVASGSL 1014
Cdd:cd03226 158 DYKNMERVGELIRElAAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
805-1006 |
5.53e-29 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 114.83 E-value: 5.53e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFRGspQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTN--MAAIRphLG 882
Cdd:cd03216 1 LELRGITKRFGG--VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFAspRDARR--AG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 883 IcpqynvlfdmltveehvwfygrlkgvsaaaidseqehlirdvGLIPkrdtQtrhLSGGMQRKLSVAIAFVGGSRVVIMD 962
Cdd:cd03216 77 I------------------------------------------AMVY----Q---LSVGERQMVEIARALARNARLLILD 107
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 564358039 963 EPTAGVDPASRRGIWELL--LKyREGRTLILSTHHLDEAELLGDRV 1006
Cdd:cd03216 108 EPTAALTPAEVERLFKVIrrLR-AQGVAVIFISHRLDEVFEIADRV 152
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
1817-2027 |
1.01e-28 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 116.45 E-value: 1.01e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTKVYRGQRSP--AVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEP----SAA 1890
Cdd:cd03257 1 LLEVKNLSVSFPTGGGSvkALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSrrlrKIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1891 HRSMGYCPQsDAIFDL---LTGREHLE--LFARLRGVPEAQVAQTALSGLVRLGLPS-YADRPAGTYSGGNKRKLATALA 1964
Cdd:cd03257 81 RKEIQMVFQ-DPMSSLnprMTIGEQIAepLRIHGKLSKKEARKEAVLLLLVGVGLPEeVLNRYPHELSGGQRQRVAIARA 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564358039 1965 LVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVRE-GRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:cd03257 160 LALNPKLLIADEPTSALDVSVQAQILDLLKKLQEElGLTLLFITHDLGVVAKIADRVAVMYAGK 223
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
805-1020 |
1.17e-28 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 116.18 E-value: 1.17e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFRGspQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVqTNMAAIRPHLGIC 884
Cdd:cd03300 1 IELENVSKFYGG--FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDI-TNLPPHKRPVNTV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 885 PQYNVLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEP 964
Cdd:cd03300 78 FQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEP 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 564358039 965 TAGVDPASRRGIWELL--LKYREGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSP 1020
Cdd:cd03300 158 LGALDLKLRKDMQLELkrLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTP 215
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
805-1020 |
1.20e-28 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 116.10 E-value: 1.20e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFRGspQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIRPHLGIC 884
Cdd:cd03218 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 885 --PQYNVLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMD 962
Cdd:cd03218 79 ylPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLD 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 564358039 963 EPTAGVDPASRRGIWELLLKYREGRTLILST-HHLDEAELLGDRVAMVASGSLCCCGSP 1020
Cdd:cd03218 159 EPFAGVDPIAVQDIQKIIKILKDRGIGVLITdHNVRETLSITDRAYIIYEGKVLAEGTP 217
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
806-1018 |
1.32e-28 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 114.45 E-value: 1.32e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 806 SIRGLkkHFRGSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQT-NMAAIRPHLGIC 884
Cdd:cd03214 1 EVENL--SVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASlSPKELARKIAYV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 885 PQynvlfdmltveehvwfygrlkgvsaaaidseqehLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEP 964
Cdd:cd03214 79 PQ----------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEP 124
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 564358039 965 TAGVDPASRRGIWELL--LKYREGRTLILSTHHLDEAELLGDRVAMVASGSLCCCG 1018
Cdd:cd03214 125 TSHLDIAHQIELLELLrrLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
1835-1979 |
1.42e-28 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 113.13 E-value: 1.42e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1835 VDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNV-AQEPSAAHRSMGYCPQSDAIFDLLTGREHL 1913
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLtDDERKSLRKEIGYVFQDPQLFPRLTVRENL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1914 ELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAG----TYSGGNKRKLATALALVGDPAVVFLDEPTT 1979
Cdd:pfam00005 81 RLGLLLKGLSKREKDARAEEALEKLGLGDLADRPVGerpgTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
1781-2047 |
1.68e-28 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 125.24 E-value: 1.68e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1781 RLLPQPKSR------LPPPLGEEDEDVVRERERVTKgatqgdvlvlR--DLTkvyrgqrspAVDHLCLGIPPGECFGLLG 1852
Cdd:NF033858 239 ALLPEEKRRghqpvvIPPRPADDDDEPAIEARGLTM----------RfgDFT---------AVDHVSFRIRRGEIFGFLG 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1853 VNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAHRSMGYCPQSdaiFDL---LTGREHLELFARLRGVPEAQVAQ 1929
Cdd:NF033858 300 SNGCGKSTTMKMLTGLLPASEGEAWLFGQPVDAGDIATRRRVGYMSQA---FSLygeLTVRQNLELHARLFHLPAAEIAA 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1930 TALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVRE-GRSVVLTSH 2008
Cdd:NF033858 377 RVAEMLERFDLADVADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPTSGVDPVARDMFWRLLIELSREdGVTIFISTH 456
|
250 260 270
....*....|....*....|....*....|....*....
gi 564358039 2009 SMEECEaLCTRLAIMVNGRFRCLGSAQHLKSRFGAgHTL 2047
Cdd:NF033858 457 FMNEAE-RCDRISLMHAGRVLASDTPAALVAARGA-ATL 493
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
821-1023 |
1.89e-28 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 117.14 E-value: 1.89e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 821 ALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDV-QTNMAAIRPHLGICPQ--YNVLFDMlTVE 897
Cdd:PRK13647 20 ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVnAENEKWVRSKVGLVFQdpDDQVFSS-TVW 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 898 EHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIW 977
Cdd:PRK13647 99 DDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLM 178
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 564358039 978 ELLLK-YREGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSPLFL 1023
Cdd:PRK13647 179 EILDRlHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
1820-2038 |
3.24e-28 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 114.91 E-value: 3.24e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1820 LRDLTKVYRGQRspAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQ----EPSAAHRSMG 1895
Cdd:cd03261 3 LRGLTKSFGGRT--VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGlseaELYRLRRRMG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1896 YCPQSDAIFDLLTG--------REHLELfarlrgvPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVG 1967
Cdd:cd03261 81 MLFQSGALFDSLTVfenvafplREHTRL-------SEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALAL 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564358039 1968 DPAVVFLDEPTTGMDP-SARRFlwNNLLSVVRE--GRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHLK 2038
Cdd:cd03261 154 DPELLLYDEPTAGLDPiASGVI--DDLIRSLKKelGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR 225
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
784-1020 |
3.64e-28 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 122.17 E-value: 3.64e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 784 APAPQDPKVLVEEPPPGlVPGVSIRGLkkHFRGSP-QPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGS 862
Cdd:COG4988 317 APEPAAPAGTAPLPAAG-PPSIELEDV--SFSYPGgRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGS 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 863 ASILGHDVQT-NMAAIRPHLGICPQYNVLFDMlTVEEHVWFYGRlkgvsaAAIDSEQEHLIRDVGL---IPKR----DTQ 934
Cdd:COG4988 394 ILINGVDLSDlDPASWRRQIAWVPQNPYLFAG-TIRENLRLGRP------DASDEELEAALEAAGLdefVAALpdglDTP 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 935 T----RHLSGG-MQRkLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELLLKYREGRTLILSTHHLDEAElLGDRVAMV 1009
Cdd:COG4988 467 LgeggRGLSGGqAQR-LALARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAKGRTVILITHRLALLA-QADRILVL 544
|
250
....*....|.
gi 564358039 1010 ASGSLCCCGSP 1020
Cdd:COG4988 545 DDGRIVEQGTH 555
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
832-1020 |
3.68e-28 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 124.08 E-value: 3.68e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 832 GHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIRPHLGICPQYNVLFDMLTVEEHVWFYGRLKGVSA 911
Cdd:NF033858 292 GEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPVDAGDIATRRRVGYMSQAFSLYGELTVRQNLELHARLFHLPA 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 912 AAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELL--LKYREGRTL 989
Cdd:NF033858 372 AEIAARVAEMLERFDLADVADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPTSGVDPVARDMFWRLLieLSREDGVTI 451
|
170 180 190
....*....|....*....|....*....|.
gi 564358039 990 ILSTHHLDEAELLgDRVAMVASGSLCCCGSP 1020
Cdd:NF033858 452 FISTHFMNEAERC-DRISLMHAGRVLASDTP 481
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
815-1020 |
5.08e-28 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 115.43 E-value: 5.08e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 815 RGSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVqTNMA-----AIRPH-LGICPQYN 888
Cdd:cd03294 33 KTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDI-AAMSrkelrELRRKkISMVFQSF 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 889 VLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGV 968
Cdd:cd03294 112 ALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSAL 191
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 564358039 969 DPASRRGIWELLLKY--REGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSP 1020
Cdd:cd03294 192 DPLIRREMQDELLRLqaELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTP 245
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
807-1012 |
6.66e-28 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 114.20 E-value: 6.66e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 807 IRGLKKHFRGSPQpALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQT----NMAAIRPHLG 882
Cdd:cd03256 3 VENLSKTYPNGKK-ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKlkgkALRQLRRQIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 883 -ICPQYNvLFDMLTVEEHVWFyGRLKGVSA----AAIDSEQE-----HLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAF 952
Cdd:cd03256 82 mIFQQFN-LIERLSVLENVLS-GRLGRRSTwrslFGLFPKEEkqralAALERVGLLDKAYQRADQLSGGQQQRVAIARAL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564358039 953 VGGSRVVIMDEPTAGVDPASRRGIWELLLKY--REGRTLILSTHHLDEAELLGDRVAMVASG 1012
Cdd:cd03256 160 MQQPKLILADEPVASLDPASSRQVMDLLKRInrEEGITVIVSLHQVDLAREYADRIVGLKDG 221
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1812-2023 |
6.71e-28 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 114.80 E-value: 6.71e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1812 ATQGDVLVLRDLTKVY--RGQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGhnvaQEPSA 1889
Cdd:COG1116 2 SAAAPALELRGVSKRFptGGGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDG----KPVTG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1890 AHRSMGYCPQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDP 1969
Cdd:COG1116 78 PGPDRGVVFQEPALLPWLTVLDNVALGLELRGVPKAERRERARELLELVGLAGFEDAYPHQLSGGMRQRVAIARALANDP 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 564358039 1970 AVVFLDEPTTGMDPSARRFLWNNLLSVVRE-GRSVVLTSHSMEECEALCTRLAIM 2023
Cdd:COG1116 158 EVLLMDEPFGALDALTRERLQDELLRLWQEtGKTVLFVTHDVDEAVFLADRVVVL 212
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
806-1014 |
1.35e-27 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 112.22 E-value: 1.35e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 806 SIRGLkkHFRGSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQT-NMAAIRPHLGIC 884
Cdd:COG4619 2 ELEGL--SFRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAmPPPEWRRQVAYV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 885 PQYNVLFDMlTVEEHVWFYGRLKGVSAAaiDSEQEHLIRDVGLIPK-RDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDE 963
Cdd:COG4619 80 PQEPALWGG-TVRDNLPFPFQLRERKFD--RERALELLERLGLPPDiLDKPVERLSGGERQRLALIRALLLQPDVLLLDE 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 564358039 964 PTAGVDPASRRGIWELLLKYR--EGRTLILSTHHLDEAELLGDRVAMVASGSL 1014
Cdd:COG4619 157 PTSALDPENTRRVEELLREYLaeEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
1818-2032 |
1.71e-27 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 112.35 E-value: 1.71e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYRGQrsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPsAAHRSMGYC 1897
Cdd:cd03301 1 VELENVTKRFGNV--TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLP-PKDRDIAMV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1898 PQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEP 1977
Cdd:cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEP 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 564358039 1978 TTGMDPSARRFLWNNLLSVVRE-GRSVVLTSHSMEECEALCTRLAIMVNGRFRCLG 2032
Cdd:cd03301 158 LSNLDAKLRVQMRAELKRLQQRlGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
803-1021 |
1.76e-27 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 113.93 E-value: 1.76e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 803 PGVSIRGLKKHFRGSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDV-QTNMAAIRPHL 881
Cdd:PRK13632 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITIsKENLKEIRKKI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 882 GICPQY-NVLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGM-QRklsVAIAFVGG--SR 957
Cdd:PRK13632 86 GIIFQNpDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQkQR---VAIASVLAlnPE 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564358039 958 VVIMDEPTAGVDPASRRGIWELLLKYREGR--TLILSTHHLDEAeLLGDRVAMVASGSLCCCGSPL 1021
Cdd:PRK13632 163 IIIFDESTSMLDPKGKREIKKIMVDLRKTRkkTLISITHDMDEA-ILADKVIVFSEGKLIAQGKPK 227
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
794-1014 |
3.91e-27 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 112.04 E-value: 3.91e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 794 VEEPPPGLvpgvsIRGLKKHFRGSPQ--PALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQ 871
Cdd:cd03267 12 VYSKEPGL-----IGSLKSLFKRKYRevEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPW 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 872 TNMAAIRPHLG-ICPQYNVLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAI 950
Cdd:cd03267 87 KRRKKFLRRIGvVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAA 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564358039 951 AFVGGSRVVIMDEPTAGVDPASRRGIWELLLKYREGR--TLILSTHHLDEAELLGDRVAMVASGSL 1014
Cdd:cd03267 167 ALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERgtTVLLTSHYMKDIEALARRVLVIDKGRL 232
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
806-1020 |
4.03e-27 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 111.98 E-value: 4.03e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 806 SIRGLKKHFRGspQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIRPHLGI-- 883
Cdd:TIGR04406 3 VAENLIKSYKK--RKVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDITHLPMHERARLGIgy 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 884 CPQYNVLFDMLTVEEHVW-FYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMD 962
Cdd:TIGR04406 81 LPQEASIFRKLTVEENIMaVLEIRKDLDRAEREERLEALLEEFQISHLRDNKAMSLSGGERRRVEIARALATNPKFILLD 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 963 EPTAGVDPASRRGIWELLLKYREGRTLILSTHHlDEAELLG--DRVAMVASGSLCCCGSP 1020
Cdd:TIGR04406 161 EPFAGVDPIAVGDIKKIIKHLKERGIGVLITDH-NVRETLDicDRAYIISDGKVLAEGTP 219
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
1805-2050 |
6.60e-27 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 114.45 E-value: 6.60e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1805 RERVTKGATqgDVLVLRDLTKVYRGQRspAVDHLCLGIPPGECFGLLGVNGAG--KTSTFRMVTGdtlPSSGEAVLAGHN 1882
Cdd:NF000106 3 RKTISNGAR--NAVEVRGLVKHFGEVK--AVDGVDLDVREGTVLGVLGP*GAA**RGALPAHV*G---PDAGRRPWRF*T 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1883 VAQEPSAAHRSMG-YCPQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLAT 1961
Cdd:NF000106 76 WCANRRALRRTIG*HRPVR*GRRESFSGRENLYMIGR*LDLSRKDARARADELLERFSLTEAAGRAAAKYSGGMRRRLDL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1962 ALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHLKSRF 2041
Cdd:NF000106 156 AASMIGRPAVLYLDEPTTGLDPRTRNEVWDEVRSMVRDGATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDELKTKV 235
|
....*....
gi 564358039 2042 GaGHTLTLR 2050
Cdd:NF000106 236 G-GRTLQIR 243
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
1818-2043 |
6.77e-27 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 111.17 E-value: 6.77e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYRGQrsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPsAAHRSMGYC 1897
Cdd:cd03300 1 IELENVSKFYGGF--VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLP-PHKRPVNTV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1898 PQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEP 1977
Cdd:cd03300 78 FQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEP 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564358039 1978 TTGMDPSARRFLWNNLLSVVRE-GRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHL----KSRFGA 2043
Cdd:cd03300 158 LGALDLKLRKDMQLELKRLQKElGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIyeepANRFVA 228
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
815-1006 |
9.31e-27 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 111.49 E-value: 9.31e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 815 RGSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVqTNMAAIRphlGICPQYNVLFDML 894
Cdd:COG4525 16 GGQPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPV-TGPGADR---GVVFQKDALLPWL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 895 TVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRR 974
Cdd:COG4525 92 NVLDNVAFGLRLRGVPKAERRARAEELLALVGLADFARRRIWQLSGGMRQRVGIARALAADPRFLLMDEPFGALDALTRE 171
|
170 180 190
....*....|....*....|....*....|....
gi 564358039 975 GIWELLLKY--REGRTLILSTHHLDEAELLGDRV 1006
Cdd:COG4525 172 QMQELLLDVwqRTGKGVFLITHSVEEALFLATRL 205
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
797-996 |
9.87e-27 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 118.78 E-value: 9.87e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 797 PPPGLVPGVSIRGLKKHFRGSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQT-NMA 875
Cdd:COG2274 466 SLPRLKGDIELENVSFRYPGDSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQiDPA 545
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 876 AIRPHLGICPQYNVLFDMlTVEEHVWFygrlkgvSAAAIDSEQ-EHLIRDVGLI------PKR-DTQ----TRHLSGGMQ 943
Cdd:COG2274 546 SLRRQIGVVLQDVFLFSG-TIRENITL-------GDPDATDEEiIEAARLAGLHdfiealPMGyDTVvgegGSNLSGGQR 617
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 564358039 944 RKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELLLKYREGRTLILSTHHL 996
Cdd:COG2274 618 QRLAIARALLRNPRILILDEATSALDAETEAIILENLRRLLKGRTVIIIAHRL 670
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
1817-2043 |
1.49e-26 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 114.16 E-value: 1.49e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTKVYRGQrsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPsAAHRSMGY 1896
Cdd:PRK11607 19 LLEIRNLTKSFDGQ--HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVP-PYQRPINM 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1897 CPQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDE 1976
Cdd:PRK11607 96 MFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDE 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564358039 1977 PTTGMDPSARRFLWNNLLSVV-REGRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSA----QHLKSRFGA 2043
Cdd:PRK11607 176 PMGALDKKLRDRMQLEVVDILeRVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPeeiyEHPTTRYSA 247
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
1812-2043 |
2.40e-26 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 116.40 E-value: 2.40e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1812 ATQGDVLVLRDLTKVYRGQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQ-EPSAA 1890
Cdd:COG4987 328 APGGPSLELEDVSFRYPGAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDlDEDDL 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1891 HRSMGYCPQSDAIFDLlTGREHLeLFARlrgvPEA------QVAQTA-LSGLVRlGLPSYADRPAG----TYSGGNKRKL 1959
Cdd:COG4987 408 RRRIAVVPQRPHLFDT-TLRENL-RLAR----PDAtdeelwAALERVgLGDWLA-ALPDGLDTWLGeggrRLSGGERRRL 480
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1960 ATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVReGRSVVLTSHSMEECEAlCTRLAIMVNGRFRCLGSAQHLKS 2039
Cdd:COG4987 481 ALARALLRDAPILLLDEPTEGLDAATEQALLADLLEALA-GRTVLLITHRLAGLER-MDRILVLEDGRIVEQGTHEELLA 558
|
....
gi 564358039 2040 RFGA 2043
Cdd:COG4987 559 QNGR 562
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
821-1014 |
3.71e-26 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 111.72 E-value: 3.71e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 821 ALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIRPHLGicpqynVLF--------D 892
Cdd:COG4586 37 AVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVRVLGYVPFKRRKEFARRIG------VVFgqrsqlwwD 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 893 mLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGmQR-KLSVAIAFVGGSRVVIMDEPTAGVDPA 971
Cdd:COG4586 111 -LPAIDSFRLLKAIYRIPDAEYKKRLDELVELLDLGELLDTPVRQLSLG-QRmRCELAAALLHRPKILFLDEPTIGLDVV 188
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 564358039 972 SRRGIWELLLKY--REGRTLILSTHHLDEAELLGDRVAMVASGSL 1014
Cdd:COG4586 189 SKEAIREFLKEYnrERGTTILLTSHDMDDIEALCDRVIVIDHGRI 233
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
822-1018 |
4.01e-26 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 108.90 E-value: 4.01e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 822 LRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPpssgSASILGHDVQTNMAAIRPHL-----GICPQYNVLFDMLTV 896
Cdd:cd03234 23 LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVE----GGGTTSGQILFNGQPRKPDQfqkcvAYVRQDDILLPGLTV 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 897 EEHVWFYGRLKG--VSAAAIDSEQE--HLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPAS 972
Cdd:cd03234 99 RETLTYTAILRLprKSSDAIRKKRVedVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFT 178
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 564358039 973 RRGIWELLLKY-REGRTLILSTHHlDEAEL--LGDRVAMVASGSLCCCG 1018
Cdd:cd03234 179 ALNLVSTLSQLaRRNRIVILTIHQ-PRSDLfrLFDRILLLSSGEIVYSG 226
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
805-1026 |
4.36e-26 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 112.09 E-value: 4.36e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFRGspQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVqTNMAAIRPHLGIC 884
Cdd:COG3839 4 LELENVSKSYGG--VEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDV-TDLPPKDRNIAMV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 885 PQYNVLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGG-MQRklsVAI--AFVGGSRVVIM 961
Cdd:COG3839 81 FQSYALYPHMTVYENIAFPLKLRKVPKAEIDRRVREAAELLGLEDLLDRKPKQLSGGqRQR---VALgrALVREPKVFLL 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 962 DEPTAGVDPASR---RGiwEL--LLKyREGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSPLFLRRH 1026
Cdd:COG3839 158 DEPLSNLDAKLRvemRA--EIkrLHR-RLGTTTIYVTHDQVEAMTLADRIAVMNDGRIQQVGTPEELYDR 224
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
822-1020 |
5.10e-26 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 108.58 E-value: 5.10e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 822 LRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVqTNMAAIRPHLGICPQYNVLFDMLTVEEHVW 901
Cdd:cd03299 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDI-TNLPPEKRDISYVPQNYALFPHMTVYKNIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 902 FYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELLL 981
Cdd:cd03299 94 YGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELK 173
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 564358039 982 KYRE--GRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSP 1020
Cdd:cd03299 174 KIRKefGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKP 214
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
1817-2027 |
8.86e-26 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 107.82 E-value: 8.86e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTKVYR--GQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTG-DTlPSSGEAVLAGHNVAQEPSAA--- 1890
Cdd:COG1136 4 LLELRNLTKSYGtgEGEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGlDR-PTSGEVLIDGQDISSLSERElar 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1891 --HRSMGYCPQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGD 1968
Cdd:COG1136 83 lrRRHIGFVFQFFNLLPELTALENVALPLLLAGVSRKERRERARELLERVGLGDRLDHRPSQLSGGQQQRVAIARALVNR 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1969 PAVVFLDEPTTGMDPSARRFLWNNLLSVVRE-GRSVVLTSHSmEECEALCTRLAIMVNGR 2027
Cdd:COG1136 163 PKLILADEPTGNLDSKTGEEVLELLRELNRElGTTIVMVTHD-PELAARADRVIRLRDGR 221
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
806-1014 |
9.29e-26 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 107.62 E-value: 9.29e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 806 SIRGLKKHFRGSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGhdvqtnmaAIRPHLGIcp 885
Cdd:cd03220 22 KLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG--------RVSSLLGL-- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 886 qyNVLFD-MLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKL--SVAIAFvgGSRVVIMD 962
Cdd:cd03220 92 --GGGFNpELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLafAIATAL--EPDILLID 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 564358039 963 EPTAGVDPASRRGIWELLLKYRE-GRTLILSTHHLDEAELLGDRVAMVASGSL 1014
Cdd:cd03220 168 EVLAVGDAAFQEKCQRRLRELLKqGKTVILVSHDPSSIKRLCDRALVLEKGKI 220
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
803-1006 |
1.28e-25 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 113.19 E-value: 1.28e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 803 PGVSIRGLKKHFRGSPqpALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQ--TNMAAIRph 880
Cdd:COG1129 3 PLLEMRGISKSFGGVK--ALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRfrSPRDAQA-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 881 LGIC--PQYNVLFDMLTVEEHVWFyGRLKG----VSAAAIDSEQEHLIRDVGL-I-PkrDTQTRHLSGGmQRKLsVAI-- 950
Cdd:COG1129 79 AGIAiiHQELNLVPNLSVAENIFL-GREPRrgglIDWRAMRRRARELLARLGLdIdP--DTPVGDLSVA-QQQL-VEIar 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 564358039 951 AFVGGSRVVIMDEPTAGVDPASRRGIWELL--LKyREGRTLILSTHHLDEAELLGDRV 1006
Cdd:COG1129 154 ALSRDARVLILDEPTASLTEREVERLFRIIrrLK-AQGVAIIYISHRLDEVFEIADRV 210
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
820-1012 |
1.50e-25 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 107.38 E-value: 1.50e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 820 PALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVqTNMAA-IRPHLGI--CPQYNVLFDMLTV 896
Cdd:COG0410 17 HVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDI-TGLPPhRIARLGIgyVPEGRRIFPSLTV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 897 EEHvwfygrLK-GVSAAAIDSEQEHLIRDV-GLIP----KRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDP 970
Cdd:COG0410 96 EEN------LLlGAYARRDRAEVRADLERVyELFPrlkeRRRQRAGTLSGGEQQMLAIGRALMSRPKLLLLDEPSLGLAP 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 564358039 971 ASRRGIWELL--LKyREGRTLILSTHHLDEAELLGDRVAMVASG 1012
Cdd:COG0410 170 LIVEEIFEIIrrLN-REGVTILLVEQNARFALEIADRAYVLERG 212
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
1818-2102 |
3.31e-25 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 109.47 E-value: 3.31e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYrGQRsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAHRSMGYC 1897
Cdd:COG1118 3 IEVRNISKRF-GSF-TLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRDLFTNLPPRERRVGFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1898 PQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEP 1977
Cdd:COG1118 81 FQHYALFPHMTVAENIAFGLRVRPPSKAEIRARVEELLELVQLEGLADRYPSQLSGGQRQRVALARALAVEPEVLLLDEP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1978 TTGMDPSARRFLWNNLLSVVRE-GRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHL----KSRFGA---GHTLTL 2049
Cdd:COG1118 161 FGALDAKVRKELRRWLRRLHDElGGTTVFVTHDQEEALELADRVVVMNQGRIEQVGTPDEVydrpATPFVArflGCVNVL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 2050 RV-----------------PPDQPEPAIAFI------VTTFPD------AELREV----HGSRLRFQLPPGGGCKL-ARV 2095
Cdd:COG1118 241 RGrviggqleadgltlpvaEPLPDGPAVAGVrphdieVSREPEgentfpATVARVselgPEVRVELKLEDGEGQPLeAEV 320
|
....*..
gi 564358039 2096 FRELAAQ 2102
Cdd:COG1118 321 TKEAWAE 327
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
805-1012 |
3.32e-25 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 105.69 E-value: 3.32e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFrgSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDV---QTNMAAIRPHL 881
Cdd:cd03262 1 IEIKNLHKSF--GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLtddKKNINELRQKV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 882 GICPQ-YNvLFDMLTVEEHVWFYGR-LKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKlsVAIAfvggsRVV 959
Cdd:cd03262 79 GMVFQqFN-LFPHLTVLENITLAPIkVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQR--VAIA-----RAL 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564358039 960 IM-------DEPTAGVDPASRRGIWELLLKY-REGRTLILSTHHLDEAELLGDRVAMVASG 1012
Cdd:cd03262 151 AMnpkvmlfDEPTSALDPELVGEVLDVMKDLaEEGMTMVVVTHEMGFAREVADRVIFMDDG 211
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
804-998 |
4.27e-25 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 106.32 E-value: 4.27e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 804 GVSIRglkkhfRGSpQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSG-SASILGHDV-QTNMAAIRPHL 881
Cdd:COG1119 8 NVTVR------RGG-KTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGnDVRLFGERRgGEDVWELRKRI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 882 GICpqYNVLFDMLTVEEHVW------FY---GRLKGVSAAAIDSEQEhLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAF 952
Cdd:COG1119 81 GLV--SPALQLRFPRDETVLdvvlsgFFdsiGLYREPTDEQRERARE-LLELLGLAHLADRPFGTLSQGEQRRVLIARAL 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 564358039 953 VGGSRVVIMDEPTAGVDPASRRGIWELL--LKYREGRTLILSTHHLDE 998
Cdd:COG1119 158 VKDPELLILDEPTAGLDLGARELLLALLdkLAAEGAPTLVLVTHHVEE 205
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
805-1014 |
6.10e-25 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 104.98 E-value: 6.10e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFRGSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDV-QTNMAAIRPHLGI 883
Cdd:cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIrQLDPADLRRNIGY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 884 CPQYNVLfdmltveehvwFYGRLK-GVSAAAIDSEQEHLIRDVGLI---------PK-RDTQT----RHLSGGMQRKLSV 948
Cdd:cd03245 83 VPQDVTL-----------FYGTLRdNITLGAPLADDERILRAAELAgvtdfvnkhPNgLDLQIgergRGLSGGQRQAVAL 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564358039 949 AIAFVGGSRVVIMDEPTAGVDPASRRGIWELLLKYREGRTLILSTHHLDEAELLgDRVAMVASGSL 1014
Cdd:cd03245 152 ARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLV-DRIIVMDSGRI 216
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
1818-2027 |
9.31e-25 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 106.19 E-value: 9.31e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVY--RGQRSP--------------------AVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGE 1875
Cdd:cd03294 1 IKIKGLYKIFgkNPQKAFkllakgkskeeilkktgqtvGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1876 AVLAGHNVAQEPSAAHR-----SMGYCPQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGT 1950
Cdd:cd03294 81 VLIDGQDIAAMSRKELRelrrkKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDE 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564358039 1951 YSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVRE-GRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:cd03294 161 LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAElQKTIVFITHDLDEALRLGDRIAIMKDGR 238
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
825-1012 |
1.00e-24 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 104.11 E-value: 1.00e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 825 LNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIRPhLGICPQYNVLFDMLTVEEHVWFyG 904
Cdd:cd03298 17 FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRP-VSMLFQENNLFAHLTVEQNVGL-G 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 905 RLKGVSAAAIDSEQEHLI-RDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELLLKY 983
Cdd:cd03298 95 LSPGLKLTAEDRQAIEVAlARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDL 174
|
170 180 190
....*....|....*....|....*....|.
gi 564358039 984 REGR--TLILSTHHLDEAELLGDRVAMVASG 1012
Cdd:cd03298 175 HAETkmTVLMVTHQPEDAKRLAQRVVFLDNG 205
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
803-1018 |
1.87e-24 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 109.87 E-value: 1.87e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 803 PGVSIRGLKKHFrgSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIRPHLG 882
Cdd:PRK09700 4 PYISMAGIGKSF--GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 883 ICPQYNVL--FDMLTVEEHVwFYGRL---KGVSAAAID-----SEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAF 952
Cdd:PRK09700 82 IGIIYQELsvIDELTVLENL-YIGRHltkKVCGVNIIDwremrVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564358039 953 VGGSRVVIMDEPTAGVDPASRRGIWELLLKYR-EGRTLILSTHHLDEAELLGDRVAMVASGSLCCCG 1018
Cdd:PRK09700 161 MLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRkEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSG 227
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
816-1020 |
2.00e-24 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 105.60 E-value: 2.00e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 816 GSP--QPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSA-----SILGHDVQTNMAAIRPHLGICPQY- 887
Cdd:PRK13649 15 GTPfeGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVrvddtLITSTSKNKDIKQIRKKVGLVFQFp 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 888 -NVLFDMlTVEEHVWFYGRLKGVS---AAAIDSEQEHLirdVGLIPK-RDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMD 962
Cdd:PRK13649 95 eSQLFEE-TVLKDVAFGPQNFGVSqeeAEALAREKLAL---VGISESlFEKNPFELSGGQMRRVAIAGILAMEPKILVLD 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 564358039 963 EPTAGVDPASRRGIWELLLK-YREGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSP 1020
Cdd:PRK13649 171 EPTAGLDPKGRKELMTLFKKlHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKP 229
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
1818-2044 |
2.41e-24 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 107.08 E-value: 2.41e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYRGQrsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPsAAHRSMGYC 1897
Cdd:COG3839 4 LELENVSKSYGGV--EALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVTDLP-PKDRNIAMV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1898 PQSDAIFDLLTGREHLElFA-RLRGVPEAQVAQtalsgLVR-----LGLPSYADRPAGTYSGGNKRKLATALALVGDPAV 1971
Cdd:COG3839 81 FQSYALYPHMTVYENIA-FPlKLRKVPKAEIDR-----RVReaaelLGLEDLLDRKPKQLSGGQRQRVALGRALVREPKV 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564358039 1972 VFLDEPTTGMDPSARRFLWNNLLSVVRE-GRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHL----KSRFGAG 2044
Cdd:COG3839 155 FLLDEPLSNLDAKLRVEMRAEIKRLHRRlGTTTIYVTHDQVEAMTLADRIAVMNDGRIQQVGTPEELydrpANLFVAG 232
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
1817-2027 |
7.25e-24 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 102.86 E-value: 7.25e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTkVYRGQRsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAV------LAGHNVAQ----- 1885
Cdd:COG1119 3 LLELRNVT-VRRGGK-TILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGNDVrlfgerRGGEDVWElrkri 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1886 ---EPSAAHRSMGYCPQSDAIfdlLTGrehleLFA---RLRGVPEAQVAQtALSGLVRLGLPSYADRPAGTYSGGNKRKL 1959
Cdd:COG1119 81 glvSPALQLRFPRDETVLDVV---LSG-----FFDsigLYREPTDEQRER-ARELLELLGLAHLADRPFGTLSQGEQRRV 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564358039 1960 ATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVREG-RSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:COG1119 152 LIARALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGaPTLVLVTHHVEEIPPGITHVLLLKDGR 220
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
821-1020 |
9.97e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 103.23 E-value: 9.97e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 821 ALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTN---MAAIRPHLGICPQY--NVLFdMLT 895
Cdd:PRK13639 17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDkksLLEVRKTVGIVFQNpdDQLF-APT 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 896 VEEHVWFyGRLK-GVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRR 974
Cdd:PRK13639 96 VEEDVAF-GPLNlGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGAS 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 564358039 975 GIWELLLKY-REGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSP 1020
Cdd:PRK13639 175 QIMKLLYDLnKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTP 221
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
806-1020 |
1.05e-23 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 102.03 E-value: 1.05e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 806 SIRGLKKHFRGspQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVqTNMAA-IRPHLGI- 883
Cdd:COG1137 5 EAENLVKSYGK--RTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDI-THLPMhKRARLGIg 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 884 -CPQYNVLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMD 962
Cdd:COG1137 82 yLPQEASIFRKLTVEDNILAVLELRKLSKKEREERLEELLEEFGITHLRKSKAYSLSGGERRRVEIARALATNPKFILLD 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 963 EPTAGVDPASRRGIWELLLKYREgRTL-ILST-HHLDEAELLGDRVAMVASGSLCCCGSP 1020
Cdd:COG1137 162 EPFAGVDPIAVADIQKIIRHLKE-RGIgVLITdHNVRETLGICDRAYIISEGKVLAEGTP 220
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
1820-2032 |
1.25e-23 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 99.82 E-value: 1.25e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1820 LRDLTkVYRGQRsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAhrsmgycpq 1899
Cdd:cd03214 2 VENLS-VGYGGR-TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKE--------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1900 sdaifdlltgrehlelFARLRGVpeaqVAQtALSglvRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTT 1979
Cdd:cd03214 71 ----------------LARKIAY----VPQ-ALE---LLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTS 126
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564358039 1980 GMDPsarrflwNN---LLSVVRE-----GRSVVLTSHSMEECEALCTRLAIMVNGRFRCLG 2032
Cdd:cd03214 127 HLDI-------AHqieLLELLRRlarerGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
1817-2037 |
1.31e-23 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 101.89 E-value: 1.31e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTKVYRGQRspAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEP--SAAHRSM 1894
Cdd:PRK10895 3 TLTAKNLAKAYKGRR--VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPlhARARRGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1895 GYCPQSDAIFDLLTGREHLELFARLR-GVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVF 1973
Cdd:PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRdDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFIL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564358039 1974 LDEPTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHL 2037
Cdd:PRK10895 161 LDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEI 224
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
1816-2034 |
1.33e-23 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 102.08 E-value: 1.33e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1816 DVLVLRDLTKVYRGQRSP--------------------AVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGE 1875
Cdd:COG1134 3 SMIEVENVSKSYRLYHEPsrslkelllrrrrtrreefwALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1876 AVLAGhNVAqepsaahrsmgycpqsdAIFDL-------LTGREHLELFARLRGVPEAQVAQT-----ALSGlvrLGlpSY 1943
Cdd:COG1134 83 VEVNG-RVS-----------------ALLELgagfhpeLTGRENIYLNGRLLGLSRKEIDEKfdeivEFAE---LG--DF 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1944 ADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDP-----SARRFlwnnlLSVVREGRSVVLTSHSMEECEALCT 2018
Cdd:COG1134 140 IDQPVKTYSSGMRARLAFAVATAVDPDILLVDEVLAVGDAafqkkCLARI-----RELRESGRTVIFVSHSMGAVRRLCD 214
|
250
....*....|....*.
gi 564358039 2019 RLAIMVNGRFRCLGSA 2034
Cdd:COG1134 215 RAIWLEKGRLVMDGDP 230
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
805-1030 |
1.93e-23 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 108.67 E-value: 1.93e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFRGspQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDvqtnMAAIRPHLGIC 884
Cdd:NF033858 2 ARLEGVSHRYGK--TVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLGGD----MADARHRRAVC 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 885 PQ--Y-------NvLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGG 955
Cdd:NF033858 76 PRiaYmpqglgkN-LYPTLSVFENLDFFGRLFGQDAAERRRRIDELLRATGLAPFADRPAGKLSGGMKQKLGLCCALIHD 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564358039 956 SRVVIMDEPTAGVDPASRRGIWELLLKYREGR---TLILSTHHLDEAELLGDRVAMVAsGSLCCCGSPLFLRRHLGCG 1030
Cdd:NF033858 155 PDLLILDEPTTGVDPLSRRQFWELIDRIRAERpgmSVLVATAYMEEAERFDWLVAMDA-GRVLATGTPAELLARTGAD 231
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
1806-2033 |
2.06e-23 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 104.64 E-value: 2.06e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1806 ERVTKGATQGDVLVLRDLTKVYRGQrsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQ 1885
Cdd:PRK09452 3 KLNKQPSSLSPLVELRGISKSFDGK--EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1886 EPsAAHRSMGYCPQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALAL 1965
Cdd:PRK09452 81 VP-AENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAV 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564358039 1966 VGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVRE-GRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGS 2033
Cdd:PRK09452 160 VNKPKVLLLDESLSALDYKLRKQMQNELKALQRKlGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGT 228
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
820-994 |
2.17e-23 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 100.56 E-value: 2.17e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 820 PALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDV----QTNMAAIRPHLGICPQYNVLFDMLT 895
Cdd:cd03292 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVsdlrGRAIPYLRRKIGVVFQDFRLLPDRN 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 896 VEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRG 975
Cdd:cd03292 95 VYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWE 174
|
170 180
....*....|....*....|
gi 564358039 976 IWELLLKYRE-GRTLILSTH 994
Cdd:cd03292 175 IMNLLKKINKaGTTVVVATH 194
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
805-1012 |
2.22e-23 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 100.41 E-value: 2.22e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFRGspQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVqTNMAAIRPHLGIC 884
Cdd:cd03301 1 VELENVTKRFGN--VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDV-TDLPPKDRDIAMV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 885 PQYNVLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEP 964
Cdd:cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEP 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 564358039 965 TAGVDPASRRGIWELL--LKYREGRTLILSTHHLDEAELLGDRVAMVASG 1012
Cdd:cd03301 158 LSNLDAKLRVQMRAELkrLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDG 207
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
1818-2035 |
2.36e-23 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 101.26 E-value: 2.36e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYrgQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPsAAHRSMGYC 1897
Cdd:cd03296 3 IEVRNVSKRF--GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVP-VQERNVGFV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1898 PQSDAIFDLLTGREH----LELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVF 1973
Cdd:cd03296 80 FQHYALFRHMTVFDNvafgLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564358039 1974 LDEPTTGMDPSARRFLWNNLLSVVRE-GRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQ 2035
Cdd:cd03296 160 LDEPFGALDAKVRKELRRWLRRLHDElHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPD 222
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
1818-2023 |
2.45e-23 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 101.86 E-value: 2.45e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVY--RGQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVaQEPSAAHrsmG 1895
Cdd:COG4525 4 LTVRHVSVRYpgGGQPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPV-TGPGADR---G 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1896 YCPQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLD 1975
Cdd:COG4525 80 VVFQKDALLPWLNVLDNVAFGLRLRGVPKAERRARAEELLALVGLADFARRRIWQLSGGMRQRVGIARALAADPRFLLMD 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 564358039 1976 EPTTGMDPSARRFLWNNLLSVVRE-GRSVVLTSHSMEECEALCTRLAIM 2023
Cdd:COG4525 160 EPFGALDALTREQMQELLLDVWQRtGKGVFLITHSVEEALFLATRLVVM 208
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
1820-2027 |
2.64e-23 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 100.36 E-value: 2.64e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1820 LRDLTKVYRGQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQ-EPSAAHRSMGYCP 1898
Cdd:cd03245 5 FRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQlDPADLRRNIGYVP 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1899 QSDAIFdLLTGREHLELFARLrgVPEAQVAQTA-LSGLVRL--GLPSYADRPAG----TYSGGNKRKLATALALVGDPAV 1971
Cdd:cd03245 85 QDVTLF-YGTLRDNITLGAPL--ADDERILRAAeLAGVTDFvnKHPNGLDLQIGergrGLSGGQRQAVALARALLNDPPI 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 564358039 1972 VFLDEPTTGMD-PSARRFLWNnlLSVVREGRSVVLTSH--SMEEceaLCTRLAIMVNGR 2027
Cdd:cd03245 162 LLLDEPTSAMDmNSEERLKER--LRQLLGDKTLIIITHrpSLLD---LVDRIIVMDSGR 215
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
1817-2044 |
2.65e-23 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 108.29 E-value: 2.65e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTKVYRGQRspAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAqepSAAHRS--- 1893
Cdd:NF033858 1 VARLEGVSHRYGKTV--ALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLGGDMA---DARHRRavc 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1894 --MGYCPQSdaifdL-------LTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALA 1964
Cdd:NF033858 76 prIAYMPQG-----LgknlyptLSVFENLDFFGRLFGQDAAERRRRIDELLRATGLAPFADRPAGKLSGGMKQKLGLCCA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1965 LVGDPAVVFLDEPTTGMDPSARRFLWnNLLSVVREGR---SVVLTSHSMEECEAlCTRLAIMVNGRFRCLGSAQHLKSRF 2041
Cdd:NF033858 151 LIHDPDLLILDEPTTGVDPLSRRQFW-ELIDRIRAERpgmSVLVATAYMEEAER-FDWLVAMDAGRVLATGTPAELLART 228
|
...
gi 564358039 2042 GAG 2044
Cdd:NF033858 229 GAD 231
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
822-1012 |
2.73e-23 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 100.62 E-value: 2.73e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 822 LRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQtnmaAIRPHLGICPQYNVLFDMLTVEEHVw 901
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQIT----EPGPDRMVVFQNYSLLPWLTVRENI- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 902 fYGRLKGVSAAAIDSEQEHLIRD----VGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIW 977
Cdd:TIGR01184 76 -ALAVDRVLPDLSKSERRAIVEEhialVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQ 154
|
170 180 190
....*....|....*....|....*....|....*..
gi 564358039 978 ELLLKYRE--GRTLILSTHHLDEAELLGDRVAMVASG 1012
Cdd:TIGR01184 155 EELMQIWEehRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
821-1020 |
4.18e-23 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 101.64 E-value: 4.18e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 821 ALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASIlGHDV------QTNMAAIRPHLGICPQY--NVLFD 892
Cdd:PRK13634 22 ALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTI-GERVitagkkNKKLKPLRKKVGIVFQFpeHQLFE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 893 MlTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPK-RDTQTRHLSGGMQRKlsVAIAFVGG--SRVVIMDEPTAGVD 969
Cdd:PRK13634 101 E-TVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEElLARSPFELSGGQMRR--VAIAGVLAmePEVLVLDEPTAGLD 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 564358039 970 PASRRGIWELL--LKYREGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSP 1020
Cdd:PRK13634 178 PKGRKEMMEMFykLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTP 230
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
1817-2011 |
4.40e-23 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 99.74 E-value: 4.40e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTKVYRGQRsPAVDHLCLGIPPGE-CFgLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAA----H 1891
Cdd:COG2884 1 MIRFENVSKRYPGGR-EALSDVSLEIEKGEfVF-LTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRREipylR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1892 RSMGYCPQsDaiFDLLTGR---EHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGD 1968
Cdd:COG2884 79 RRIGVVFQ-D--FRLLPDRtvyENVALPLRVTGKSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAIARALVNR 155
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 564358039 1969 PAVVFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSME 2011
Cdd:COG2884 156 PELLLADEPTGNLDPETSWEIMELLEEINRRGTTVLIATHDLE 198
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
1818-2027 |
4.45e-23 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 98.41 E-value: 4.45e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYRGQRspAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVA---QEPSAAHRSM 1894
Cdd:cd03229 1 LELKNVSKRYGQKT--VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTdleDELPPLRRRI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1895 GYCPQSDAIFDLLTGREHlelfarlrgvpeaqvaqtalsglVRLGLpsyadrpagtySGGNKRKLATALALVGDPAVVFL 1974
Cdd:cd03229 79 GMVFQDFALFPHLTVLEN-----------------------IALGL-----------SGGQQQRVALARALAMDPDVLLL 124
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 564358039 1975 DEPTTGMDPSARRFLWNNLLSVVRE-GRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:cd03229 125 DEPTSALDPITRREVRALLKSLQAQlGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
784-1009 |
6.45e-23 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 105.45 E-value: 6.45e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 784 APAPQDPKVLVEEPPPglvPGVSIRGLKKHFRGSPqPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSA 863
Cdd:TIGR02857 304 APRPLAGKAPVTAAPA---SSLEFSGVSVAYPGRR-PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSI 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 864 SILGHDVQT-NMAAIRPHLGICPQYNVLFDMlTVEEHVWFYgrLKGVSAAAID--SEQEHLIRDV-----GLIPKRDTQT 935
Cdd:TIGR02857 380 AVNGVPLADaDADSWRDQIAWVPQHPFLFAG-TIAENIRLA--RPDASDAEIReaLERAGLDEFVaalpqGLDTPIGEGG 456
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564358039 936 RHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELLLKYREGRTLILSTHHLDEAELLgDRVAMV 1009
Cdd:TIGR02857 457 AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAALA-DRIVVL 529
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
804-1020 |
6.50e-23 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 99.72 E-value: 6.50e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 804 GVSIRGLKKHFRGSPqpALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVqTNMAAIRPHLGI 883
Cdd:cd03296 2 SIEVRNVSKRFGDFV--ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDA-TDVPVQERNVGF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 884 CPQYNVLFDMLTVEEHVWFYGRLKGV----SAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVV 959
Cdd:cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRserpPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564358039 960 IMDEPTAGVDPASRRGI--WELLLKYREGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSP 1020
Cdd:cd03296 159 LLDEPFGALDAKVRKELrrWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTP 221
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
1818-2027 |
9.10e-23 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 99.56 E-value: 9.10e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYRGQRsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAHRS---- 1893
Cdd:cd03256 1 IEVENLSKTYPNGK-KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQlrrq 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1894 MGY-------CPQSDAIFDLLTGR--EHLELFARLRGVPEAQVaQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALA 1964
Cdd:cd03256 80 IGMifqqfnlIERLSVLENVLSGRlgRRSTWRSLFGLFPKEEK-QRALAALERVGLLDKAYQRADQLSGGQQQRVAIARA 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564358039 1965 LVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVRE-GRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:cd03256 159 LMQQPKLILADEPVASLDPASSRQVMDLLKRINREeGITVIVSLHQVDLAREYADRIVGLKDGR 222
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
781-996 |
9.46e-23 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 104.75 E-value: 9.46e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 781 SVLAPAPQDPKvlvEEPPPGLVPGVSIRGLKKHFRGSPqPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSS 860
Cdd:TIGR02868 314 AGPVAEGSAPA---AGAVGLGKPTLELRDLSAGYPGAP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQ 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 861 GSASILGHDVQT-NMAAIRPHLGICPQYNVLFDMlTVEEHVWFyGRlkgvsAAAIDSEQEHLIRDVGL-IPKRDT----Q 934
Cdd:TIGR02868 390 GEVTLDGVPVSSlDQDEVRRRVSVCAQDAHLFDT-TVRENLRL-AR-----PDATDEELWAALERVGLaDWLRALpdglD 462
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564358039 935 T------RHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELLLKYREGRTLILSTHHL 996
Cdd:TIGR02868 463 TvlgeggARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHHL 530
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
805-1014 |
1.26e-22 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 97.00 E-value: 1.26e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFRGSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIRPHLGIC 884
Cdd:cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 885 PQYNVLFDmltveehvwfygrlkgvsaaaidseqEHLIRDVGlipkrdtqtRHLSGGMQRKLSVAIAFVGGSRVVIMDEP 964
Cdd:cd03247 81 NQRPYLFD--------------------------TTLRNNLG---------RRFSGGERQRLALARILLQDAPIVLLDEP 125
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 564358039 965 TAGVDPASRRGIWELLLKYREGRTLILSTHHLDEAELLgDRVAMVASGSL 1014
Cdd:cd03247 126 TVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHM-DKILFLENGKI 174
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
1820-2027 |
1.40e-22 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 98.41 E-value: 1.40e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1820 LRDLTkVYRGQRSpAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTG-----DTLPSSGEAVLAGHNV---AQEPSAAH 1891
Cdd:cd03260 3 LRDLN-VYYGDKH-ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRlndliPGAPDEGEVLLDGKDIydlDVDVLELR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1892 RSMGYCPQSDAIFDLlTGREHLELFARLRGV-PEAQVAQTALSGLVRLGLPSYADRPAGTY--SGGNKRKLATALALVGD 1968
Cdd:cd03260 81 RRVGMVFQKPNPFPG-SIYDNVAYGLRLHGIkLKEELDERVEEALRKAALWDEVKDRLHALglSGGQQQRLCLARALANE 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 564358039 1969 PAVVFLDEPTTGMDPSARRFLwNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:cd03260 160 PEVLLLDEPTSALDPISTAKI-EELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGR 217
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
822-994 |
1.55e-22 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 97.24 E-value: 1.55e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 822 LRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIRPHLGICPQYNVLFDMLTVEEHVW 901
Cdd:cd03213 25 LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLM 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 902 FYGRLKGvsaaaidseqehlirdvglipkrdtqtrhLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELLL 981
Cdd:cd03213 105 FAAKLRG-----------------------------LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLR 155
|
170
....*....|....
gi 564358039 982 KYR-EGRTLILSTH 994
Cdd:cd03213 156 RLAdTGRTIICSIH 169
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
821-1020 |
2.70e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 99.15 E-value: 2.70e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 821 ALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDV---QTNMAAIRPHLGICPQY--NVLFDMlT 895
Cdd:PRK13636 21 ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIdysRKGLMKLRESVGMVFQDpdNQLFSA-S 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 896 VEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRG 975
Cdd:PRK13636 100 VYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSE 179
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 564358039 976 IWELLLKYRE--GRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSP 1020
Cdd:PRK13636 180 IMKLLVEMQKelGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNP 226
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
785-996 |
2.89e-22 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 103.71 E-value: 2.89e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 785 PAPQDPKVLVEEPPPGlvPGVSIRGLkkHFR-GSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSA 863
Cdd:COG1132 322 PEIPDPPGAVPLPPVR--GEIEFENV--SFSyPGDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRI 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 864 SILGHDVQT-NMAAIRPHLGICPQYNVLFDMlTVEEHVwFYGRLKG----VSAAAIDSEQEHLIRDV--GLipkrDTQT- 935
Cdd:COG1132 398 LIDGVDIRDlTLESLRRQIGVVPQDTFLFSG-TIRENI-RYGRPDAtdeeVEEAAKAAQAHEFIEALpdGY----DTVVg 471
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564358039 936 ---RHLSGGmQR-KLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELLLKYREGRTLILSTHHL 996
Cdd:COG1132 472 ergVNLSGG-QRqRIAIARALLKDPPILILDEATSALDTETEALIQEALERLMKGRTTIVIAHRL 535
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
1818-2008 |
3.04e-22 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 96.66 E-value: 3.04e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTkVYRGQRsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAHRSMGYC 1897
Cdd:TIGR01189 1 LAARNLA-CSRGER-MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRDEPHENILYL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1898 PQSDAIFDLLTGREHLELFARLRGvPEAQVAQTALSglvRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEP 1977
Cdd:TIGR01189 79 GHLPGLKPELSALENLHFWAAIHG-GAQRTIEDALA---AVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEP 154
|
170 180 190
....*....|....*....|....*....|.
gi 564358039 1978 TTGMDPSARRFLWNNLLSVVREGRSVVLTSH 2008
Cdd:TIGR01189 155 TTALDKAGVALLAGLLRAHLARGGIVLLTTH 185
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
1817-2028 |
3.54e-22 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 95.96 E-value: 3.54e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTkvyrgqRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQE-PSAAHRS-M 1894
Cdd:cd03215 4 VLEVRGLS------VKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRsPRDAIRAgI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1895 GYCP---QSDAIFDLLTGREHLELFARLrgvpeaqvaqtalsglvrlglpsyadrpagtySGGNKRKLATALALVGDPAV 1971
Cdd:cd03215 78 AYVPedrKREGLVLDLSVAENIALSSLL--------------------------------SGGNQQKVVLARWLARDPRV 125
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 564358039 1972 VFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGRF 2028
Cdd:cd03215 126 LILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
1834-2027 |
3.62e-22 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 98.14 E-value: 3.62e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1834 AVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAHRSMGYCP--QSDAIFDLLTGRE 1911
Cdd:PRK11300 20 AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRtfQHVRLFREMTVIE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1912 --------HLE--LFARLRGVP-----EAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDE 1976
Cdd:PRK11300 100 nllvaqhqQLKtgLFSGLLKTPafrraESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDE 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 564358039 1977 PTTGMDPSARRFLwNNLLSVVRE--GRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:PRK11300 180 PAAGLNPKETKEL-DELIAELRNehNVTVLLIEHDMKLVMGISDRIYVVNQGT 231
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
805-1020 |
3.81e-22 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 98.72 E-value: 3.81e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFRGSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSAS---ILGHDV-QTNMAAIRPH 880
Cdd:PRK13640 6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSkitVDGITLtAKTVWDIREK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 881 LGICPQY-NVLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVV 959
Cdd:PRK13640 86 VGIVFQNpDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKII 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564358039 960 IMDEPTAGVDPASRRGIWELL--LKYREGRTLILSTHHLDEAElLGDRVAMVASGSLCCCGSP 1020
Cdd:PRK13640 166 ILDESTSMLDPAGKEQILKLIrkLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQGSP 227
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
1820-2027 |
4.99e-22 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 99.88 E-value: 4.99e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1820 LRDLTKVYRGQRSP--AVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNV----AQEPSAAHRS 1893
Cdd:PRK11153 4 LKNISKVFPQGGRTihALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLtalsEKELRKARRQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1894 MGYCPQSdaiFDLLTGR---EHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADR-PAgTYSGGNKRKLATALALVGDP 1969
Cdd:PRK11153 84 IGMIFQH---FNLLSSRtvfDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRyPA-QLSGGQKQRVAIARALASNP 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 564358039 1970 AVVFLDEPTTGMDPSARRFLWNNLLSVVRE-GRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:PRK11153 160 KVLLCDEATSALDPATTRSILELLKDINRElGLTIVLITHEMDVVKRICDRVAVIDAGR 218
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
1796-2047 |
5.74e-22 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 103.38 E-value: 5.74e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1796 EEDEDVVRERERVTKGATQGDVlVLRDLTKVYRGQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGE 1875
Cdd:COG2274 453 DLPPEREEGRSKLSLPRLKGDI-ELENVSFRYPGDSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGR 531
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1876 AVLAGHNVAQ-EPSAAHRSMGYCPQSDAIFdllTG--REHLELFArlRGVPEAQVAQTA-LSGL---VRlglpsyaDRPA 1948
Cdd:COG2274 532 ILIDGIDLRQiDPASLRRQIGVVLQDVFLF---SGtiRENITLGD--PDATDEEIIEAArLAGLhdfIE-------ALPM 599
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1949 G----------TYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVReGRSVVLTSHSMeECEALCT 2018
Cdd:COG2274 600 GydtvvgeggsNLSGGQRQRLAIARALLRNPRILILDEATSALDAETEAIILENLRRLLK-GRTVIIIAHRL-STIRLAD 677
|
250 260
....*....|....*....|....*....
gi 564358039 2019 RLAIMVNGRFRCLGSAQHLKSRFGAGHTL 2047
Cdd:COG2274 678 RIIVLDKGRIVEDGTHEELLARKGLYAEL 706
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
805-1014 |
7.00e-22 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 97.18 E-value: 7.00e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFRGSP--QPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDV-QTNMAAIRPHL 881
Cdd:COG1124 2 LEVRNLSVSYGQGGrrVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVtRRRRKAFRRRV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 882 GICPQ--YNVLFDMLTVEEHVWFYGRLKGVsaAAIDSEQEHLIRDVGLIPKRDTQTRH-LSGG-MQRklsVAI--AFVGG 955
Cdd:COG1124 82 QMVFQdpYASLHPRHTVDRILAEPLRIHGL--PDREERIAELLEQVGLPPSFLDRYPHqLSGGqRQR---VAIarALILE 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564358039 956 SRVVIMDEPTAGVDPASRRGIWELLLKYRE--GRTLILSTHHLDEAELLGDRVAMVASGSL 1014
Cdd:COG1124 157 PELLLLDEPTSALDVSVQAEILNLLKDLREerGLTYLFVSHDLAVVAHLCDRVAVMQNGRI 217
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
816-1020 |
8.16e-22 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 97.81 E-value: 8.16e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 816 GSP--QPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDV---QTNMAAIRPHLGICPQY--N 888
Cdd:PRK13637 15 GTPfeKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDItdkKVKLSDIRKKVGLVFQYpeY 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 889 VLFDMlTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPK--RDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTA 966
Cdd:PRK13637 95 QLFEE-TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEdyKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTA 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 564358039 967 GVDPASRRGIWELL--LKYREGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSP 1020
Cdd:PRK13637 174 GLDPKGRDEILNKIkeLHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTP 229
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
1817-2027 |
1.16e-21 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 94.93 E-value: 1.16e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTKVYRGQRSPA----VDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTG--DTLPSSGEAVLAGHNVaqEPSAA 1890
Cdd:cd03213 3 TLSFRNLTVTVKSSPSKSgkqlLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGrrTGLGVSGEVLINGRPL--DKRSF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1891 HRSMGYCPQSDAIFDLLTGREHLELFARLRGVpeaqvaqtalsglvrlglpsyadrpagtySGGNKRKLATALALVGDPA 1970
Cdd:cd03213 81 RKIIGYVPQDDILHPTLTVRETLMFAAKLRGL-----------------------------SGGERKRVSIALELVSNPS 131
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 564358039 1971 VVFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVLTSHS-MEECEALCTRLAIMVNGR 2027
Cdd:cd03213 132 LLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQpSSEIFELFDKLLLLSQGR 189
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
808-1035 |
1.46e-21 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 96.80 E-value: 1.46e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 808 RGLKKHFRGSPQpALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDV-QTNMAAIRPHLGICPQ 886
Cdd:PRK13652 7 RDLCYSYSGSKE-ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPItKENIREVRKFVGLVFQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 887 Y--NVLFDMlTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEP 964
Cdd:PRK13652 86 NpdDQIFSP-TVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEP 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564358039 965 TAGVDPASRRGIWELL--LKYREGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSP--LFLRRHLGCGYYLTL 1035
Cdd:PRK13652 165 TAGLDPQGVKELIDFLndLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVeeIFLQPDLLARVHLDL 239
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
1820-2008 |
1.60e-21 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 100.91 E-value: 1.60e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1820 LRDLTKVYrGQRsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHN----VAQEPSA-AHRS- 1893
Cdd:COG0488 1 LENLSKSF-GGR-PLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIPKGLrigyLPQEPPLdDDLTv 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1894 -----MGYCPQSDAI-----------FDLLTGREHLELFARLRGV----PEAQVAQtALSGlvrLGLP-SYADRPAGTYS 1952
Cdd:COG0488 79 ldtvlDGDAELRALEaeleeleaklaEPDEDLERLAELQEEFEALggweAEARAEE-ILSG---LGFPeEDLDRPVSELS 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 564358039 1953 GGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSvvREGrSVVLTSH 2008
Cdd:COG0488 155 GGWRRRVALARALLSEPDLLLLDEPTNHLDLESIEWLEEFLKN--YPG-TVLVVSH 207
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
803-1020 |
1.96e-21 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 98.87 E-value: 1.96e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 803 PGVSIRGLKKHFRGspQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVqTNMAAIRPHLG 882
Cdd:PRK09452 13 PLVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDI-THVPAENRHVN 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 883 ICPQYNVLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMD 962
Cdd:PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLD 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564358039 963 EPTAGVDPASRRGIwELLLKY--RE-GRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSP 1020
Cdd:PRK09452 170 ESLSALDYKLRKQM-QNELKAlqRKlGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTP 229
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
1817-2008 |
1.99e-21 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 94.49 E-value: 1.99e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTkVYRGQRsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAHRSMGY 1896
Cdd:PRK13538 1 MLEARNLA-CERDER-ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLY 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1897 CPQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSglvRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDE 1976
Cdd:PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALA---QVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDE 155
|
170 180 190
....*....|....*....|....*....|..
gi 564358039 1977 PTTGMDPSARRFLWNNLLSVVREGRSVVLTSH 2008
Cdd:PRK13538 156 PFTAIDKQGVARLEALLAQHAEQGGMVILTTH 187
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
1822-2026 |
2.74e-21 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 94.25 E-value: 2.74e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1822 DLTKVYRGQRSpAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQepSAAHRSMGYCPQsD 1901
Cdd:cd03226 4 NISFSYKKGTE-ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA--KERRKSIGYVMQ-D 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1902 AIFDLLTGREHLELFARLRGVPEA-QVAQTALSglvRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTG 1980
Cdd:cd03226 80 VDYQLFTDSVREELLLGLKELDAGnEQAETVLK---DLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSG 156
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 564358039 1981 MDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNG 2026
Cdd:cd03226 157 LDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANG 202
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
805-1007 |
2.78e-21 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 97.05 E-value: 2.78e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFRGSPQP--ALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPP---SSGSASILGHDVQT----NMA 875
Cdd:COG0444 2 LEVRNLKVYFPTRRGVvkAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPpgiTSGEILFDGEDLLKlsekELR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 876 AIR-PHLGICPQ--YNVLFDMLTVEEHVW-FYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRH---LSGGMQRKLSV 948
Cdd:COG0444 82 KIRgREIQMIFQdpMTSLNPVMTVGDQIAePLRIHGGLSKAEARERAIELLERVGLPDPERRLDRYpheLSGGMRQRVMI 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564358039 949 AIAFVGGSRVVIMDEPTAGVDPASRRGIWELLLKYRE--GRTLILSTHHLDEAELLGDRVA 1007
Cdd:COG0444 162 ARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRelGLAILFITHDLGVVAEIADRVA 222
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
808-1020 |
2.99e-21 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 95.15 E-value: 2.99e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 808 RGLKKHFRGSPQP------ALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGhdvqtNMAAIrphL 881
Cdd:COG1134 22 RSLKELLLRRRRTrreefwALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRVEVNG-----RVSAL---L 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 882 GIcpqyNVLFDM-LTVEEHVWFYGRLKGVSAAAIDSeqehLIRDV----GLIPKRDTQTRHLSGGMQRKLSVAIAFVGGS 956
Cdd:COG1134 94 EL----GAGFHPeLTGRENIYLNGRLLGLSRKEIDE----KFDEIvefaELGDFIDQPVKTYSSGMRARLAFAVATAVDP 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564358039 957 RVVIMDEPTAGVDPA----SRRGIWELLlkyREGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSP 1020
Cdd:COG1134 166 DILLVDEVLAVGDAAfqkkCLARIRELR---ESGRTVIFVSHSMGAVRRLCDRAIWLEKGRLVMDGDP 230
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
1818-2027 |
3.31e-21 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 92.83 E-value: 3.31e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYRGQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAA-HRSMGY 1896
Cdd:cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESlRKNIAY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1897 CPQSDAIFdlltgrehlelfarlrgvpeaqvaqtalSGLVR---LglpsyadrpagtySGGNKRKLATALALVGDPAVVF 1973
Cdd:cd03228 81 VPQDPFLF----------------------------SGTIReniL-------------SGGQRQRIAIARALLRDPPILI 119
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 564358039 1974 LDEPTTGMDPSARRFLWNNLLSvVREGRSVVLTSHSMEECEaLCTRLAIMVNGR 2027
Cdd:cd03228 120 LDEATSALDPETEALILEALRA-LAKGKTVIVIAHRLSTIR-DADRIIVLDDGR 171
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
803-1014 |
3.97e-21 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 92.88 E-value: 3.97e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 803 PGVSIRGLKKHfrgspqPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQ--TNMAAIRPH 880
Cdd:cd03215 3 PVLEVRGLSVK------GAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTrrSPRDAIRAG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 881 LGICP---QYNVLFDMLTVEEHVwfygrlkgvsaaaidseqehlirdvglipkrdTQTRHLSGGMQRKLSVAIAFVGGSR 957
Cdd:cd03215 77 IAYVPedrKREGLVLDLSVAENI--------------------------------ALSSLLSGGNQQKVVLARWLARDPR 124
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 564358039 958 VVIMDEPTAGVDPASRRGIWELLLKYR-EGRTLILSTHHLDEAELLGDRVAMVASGSL 1014
Cdd:cd03215 125 VLILDEPTRGVDVGAKAEIYRLIRELAdAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
1795-2028 |
4.64e-21 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 99.49 E-value: 4.64e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1795 GEEDEDV------VRERERVTKGATQGDVLVLRDLTKVY----RGQRSpAVDHLCLGIPPGECFGLLGVNGAGKTSTFRM 1864
Cdd:TIGR03269 251 GTPDEVVavfmegVSEVEKECEVEVGEPIIKVRNVSKRYisvdRGVVK-AVDNVSLEVKEGEIFGIVGTSGAGKTTLSKI 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1865 VTGDTLPSSGEA-VLAGHNVAQ-------EPSAAHRSMGYCPQSDAIF------DLLTGREHLEL---FARLRGVPEAQV 1927
Cdd:TIGR03269 330 IAGVLEPTSGEVnVRVGDEWVDmtkpgpdGRGRAKRYIGILHQEYDLYphrtvlDNLTEAIGLELpdeLARMKAVITLKM 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1928 AQTALSGLVRLgLPSYADrpagTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVRE-GRSVVLT 2006
Cdd:TIGR03269 410 VGFDEEKAEEI-LDKYPD----ELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEmEQTFIIV 484
|
250 260
....*....|....*....|..
gi 564358039 2007 SHSMEECEALCTRLAIMVNGRF 2028
Cdd:TIGR03269 485 SHDMDFVLDVCDRAALMRDGKI 506
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
1818-2027 |
4.74e-21 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 92.11 E-value: 4.74e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYRGQRspAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVA-QEPSAAHRsmgy 1896
Cdd:cd03216 1 LELRGITKRFGGVK--ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSfASPRDARR---- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1897 cpqsdaifdlltgrehlelfarlRGVpeAQVAQtalsglvrlglpsyadrpagtYSGGNKRKLATALALVGDPAVVFLDE 1976
Cdd:cd03216 75 -----------------------AGI--AMVYQ---------------------LSVGERQMVEIARALARNARLLILDE 108
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 564358039 1977 PTTGMDPSARRflwnNLLSVVR----EGRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:cd03216 109 PTAALTPAEVE----RLFKVIRrlraQGVAVIFISHRLDEVFEIADRVTVLRDGR 159
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
832-1012 |
5.09e-21 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 94.05 E-value: 5.09e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 832 GHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIRPhLGICPQYNVLFDMLTVEEHVWFyGRLKGVSA 911
Cdd:COG3840 25 GERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALPPAERP-VSMLFQENNLFPHLTVAQNIGL-GLRPGLKL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 912 AAIDSEQ-EHLIRDVGLIPKRDTQTRHLSGG-MQRklsVAIA--FVGGSRVVIMDEPTAGVDPASRRGIWELL--LKYRE 985
Cdd:COG3840 103 TAEQRAQvEQALERVGLAGLLDRLPGQLSGGqRQR---VALArcLVRKRPILLLDEPFSALDPALRQEMLDLVdeLCRER 179
|
170 180
....*....|....*....|....*..
gi 564358039 986 GRTLILSTHHLDEAELLGDRVAMVASG 1012
Cdd:COG3840 180 GLTVLMVTHDPEDAARIADRVLLVADG 206
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
819-999 |
5.56e-21 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 92.68 E-value: 5.56e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 819 QPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDvqtnmaairpHLGICPQYNVLFDML--TV 896
Cdd:NF040873 5 RPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRAGGA----------RVAYVPQRSEVPDSLplTV 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 897 EEHV----W----FYGRLKGVSAAAIDSEQEHlirdVGLIPKRDTQTRHLSGG-MQRKLsVAIAFVGGSRVVIMDEPTAG 967
Cdd:NF040873 75 RDLVamgrWarrgLWRRLTRDDRAAVDDALER----VGLADLAGRQLGELSGGqRQRAL-LAQGLAQEADLLLLDEPTTG 149
|
170 180 190
....*....|....*....|....*....|...
gi 564358039 968 VDPASRRGIWELLLKY-REGRTLILSTHHLDEA 999
Cdd:NF040873 150 LDAESRERIIALLAEEhARGATVVVVTHDLELV 182
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
805-1012 |
5.76e-21 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 94.77 E-value: 5.76e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHF-RGSP--QPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVqTNMAAIR--- 878
Cdd:COG1101 2 LELKNLSKTFnPGTVneKRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDV-TKLPEYKrak 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 879 --------PHLGICPQynvlfdmLTVEEHV---WFYGRLKGVSAAAIDSEQEH---LIRDVGL-IPKR-DTQTRHLSGGm 942
Cdd:COG1101 81 yigrvfqdPMMGTAPS-------MTIEENLalaYRRGKRRGLRRGLTKKRRELfreLLATLGLgLENRlDTKVGLLSGG- 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564358039 943 QRK-LSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELLLKY--REGRTLILSTHHLDEAELLGDRVAMVASG 1012
Cdd:COG1101 153 QRQaLSLLMATLTKPKLLLLDEHTAALDPKTAALVLELTEKIveENNLTTLMVTHNMEQALDYGNRLIMMHEG 225
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
821-1019 |
6.25e-21 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 94.46 E-value: 6.25e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 821 ALRGLNLDFYEGHITAFLGHNGAGKTTTL-SI--LSGLFP--PSSGSASILGHDV---QTNMAAIRPHLGICPQYNVLFD 892
Cdd:PRK14239 20 ALNSVSLDFYPNEITALIGPSGSGKSTLLrSInrMNDLNPevTITGSIVYNGHNIyspRTDTVDLRKEIGMVFQQPNPFP 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 893 MlTVEEHVWFYGRLKGVS--------------AAAIDSEQEHLIRDVGLipkrdtqtrHLSGGMQRKLSVAIAFVGGSRV 958
Cdd:PRK14239 100 M-SIYENVVYGLRLKGIKdkqvldeavekslkGASIWDEVKDRLHDSAL---------GLSGGQQQRVCIARVLATSPKI 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564358039 959 VIMDEPTAGVDPASRRGIWELLLKYREGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGS 1019
Cdd:PRK14239 170 ILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYND 230
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
1818-2028 |
6.81e-21 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 91.99 E-value: 6.81e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYRGQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAHRSMGYC 1897
Cdd:cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1898 PQSDAIFDlLTGREHlelfarlrgvpeaqvaqtalsglvrLGLPsyadrpagtYSGGNKRKLATALALVGDPAVVFLDEP 1977
Cdd:cd03247 81 NQRPYLFD-TTLRNN-------------------------LGRR---------FSGGERQRLALARILLQDAPIVLLDEP 125
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 564358039 1978 TTGMDPSARRFLWNNLLSVVREgRSVVLTSHSMEECEALcTRLAIMVNGRF 2028
Cdd:cd03247 126 TVGLDPITERQLLSLIFEVLKD-KTLIWITHHLTGIEHM-DKILFLENGKI 174
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
1794-2027 |
6.84e-21 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 98.94 E-value: 6.84e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1794 LGEEDEDVVRERERvTKGATqgdVLVLRDLTkvyrgqRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSS 1873
Cdd:COG1129 237 VGRELEDLFPKRAA-APGEV---VLEVEGLS------VGGVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADS 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1874 GEAVLAGHNVA-QEPSAAHRS-MGYCP---QSDAIFDLLTGRE-----HLELFARLRGVPEAQVAQTALSGLVRLGL-PS 1942
Cdd:COG1129 307 GEIRLDGKPVRiRSPRDAIRAgIAYVPedrKGEGLVLDLSIREnitlaSLDRLSRGGLLDRRRERALAEEYIKRLRIkTP 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1943 YADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAI 2022
Cdd:COG1129 387 SPEQPVGNLSGGNQQKVVLAKWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAVIVISSELPELLGLSDRILV 466
|
....*
gi 564358039 2023 MVNGR 2027
Cdd:COG1129 467 MREGR 471
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
805-1020 |
6.96e-21 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 93.33 E-value: 6.96e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFRGSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQT-NMAAIRPHLGI 883
Cdd:cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKiGLHDLRSRISI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 884 CPQYNVLFDMlTVEEHVWFYGRlkgVSAAAIDS--EQEHLIRDVGLIPKR-DTQT----RHLSGGmQRKL-SVAIAFVGG 955
Cdd:cd03244 83 IPQDPVLFSG-TIRSNLDPFGE---YSDEELWQalERVGLKEFVESLPGGlDTVVeeggENLSVG-QRQLlCLARALLRK 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564358039 956 SRVVIMDEPTAGVDPASRRGIWELLLKYREGRTLILSTHHLDeAELLGDRVAMVASGSLCCCGSP 1020
Cdd:cd03244 158 SKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLD-TIIDSDRILVLDKGRVVEFDSP 221
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
1845-2027 |
8.97e-21 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 93.55 E-value: 8.97e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1845 GECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAaHRSMGYCPQSDAIFDLLTGREHLELFARLRGVPE 1924
Cdd:cd03299 25 GDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE-KRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1925 AQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVREGRSVV 2004
Cdd:cd03299 104 KEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTV 183
|
170 180
....*....|....*....|....
gi 564358039 2005 L-TSHSMEECEALCTRLAIMVNGR 2027
Cdd:cd03299 184 LhVTHDFEEAWALADKVAIMLNGK 207
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
1809-2032 |
1.21e-20 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 92.60 E-value: 1.21e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1809 TKGATQGDVLVLRDLTKVYRGQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGhNVAqeps 1888
Cdd:cd03220 12 TYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG-RVS---- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1889 aahrsmgycpqsdAIFDL-------LTGREHLELFARLRGVPEAQVAQ-----TALSglvrlGLPSYADRPAGTYSGGNK 1956
Cdd:cd03220 87 -------------SLLGLgggfnpeLTGRENIYLNGRLLGLSRKEIDEkideiIEFS-----ELGDFIDLPVKTYSSGMK 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564358039 1957 RKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGRFRCLG 2032
Cdd:cd03220 149 ARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
822-1020 |
1.64e-20 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 93.30 E-value: 1.64e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 822 LRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDV-QTNMAAIRPHLGICPQYNVL-FDmLTVEEH 899
Cdd:PRK13548 18 LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLaDWSPAELARRRAVLPQHSSLsFP-FTVEEV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 900 VWFyGRLKGV-SAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGG-MQRklsVAIAFV--------GGSRVVIMDEPTAGVD 969
Cdd:PRK13548 97 VAM-GRAPHGlSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGeQQR---VQLARVlaqlwepdGPPRWLLLDEPTSALD 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 564358039 970 PASRRGIWELL--LKYREGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSP 1020
Cdd:PRK13548 173 LAHQHHVLRLArqLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTP 225
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
821-1020 |
1.77e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 94.03 E-value: 1.77e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 821 ALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSAS-----ILGHDVQTNMAAIRPHLGICPQY--NVLFDM 893
Cdd:PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTvgdivVSSTSKQKEIKPVRKKVGVVFQFpeSQLFEE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 894 lTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPK-RDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPAS 972
Cdd:PRK13643 101 -TVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEfWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKA 179
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 564358039 973 RRGIWELLLK-YREGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSP 1020
Cdd:PRK13643 180 RIEMMQLFESiHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTP 228
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
816-1020 |
1.99e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 93.74 E-value: 1.99e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 816 GSPQPA--LRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDV--QT---NMAAIRPHLGICPQY- 887
Cdd:PRK13641 15 GTPMEKkgLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHItpETgnkNLKKLRKKVSLVFQFp 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 888 -NVLFDMlTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLipKRDTQTR---HLSGGMQRKLSVAIAFVGGSRVVIMDE 963
Cdd:PRK13641 95 eAQLFEN-TVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGL--SEDLISKspfELSGGQMRRVAIAGVMAYEPEILCLDE 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 564358039 964 PTAGVDPASRRGIWELLLKY-REGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSP 1020
Cdd:PRK13641 172 PAAGLDPEGRKEMMQLFKDYqKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASP 229
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
1833-2103 |
3.62e-20 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 95.29 E-value: 3.62e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1833 PAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNV-AQEPSAAHRSMGYCPQSDAI---FDLLT 1908
Cdd:PRK09536 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVeALSARAASRRVASVPQDTSLsfeFDVRQ 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1909 ----GRE-HLELFARLRGVPEAQVAQtalsGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMD- 1982
Cdd:PRK09536 97 vvemGRTpHRSRFDTWTETDRAAVER----AMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDi 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1983 -------PSARRflwnnllsVVREGRSVVLTSHSMEECEALCTRLAIMVNGRFRCLG------SAQHLKSRFGAGHTLTL 2049
Cdd:PRK09536 173 nhqvrtlELVRR--------LVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGppadvlTADTLRAAFDARTAVGT 244
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 2050 RVPPDQPepaiafIVTTFPD------AELREVHgsrlrfqlPPGGGCKLARVFRELAAQG 2103
Cdd:PRK09536 245 DPATGAP------TVTPLPDpdrteaAADTRVH--------VVGGGQPAARAVSRLVAAG 290
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
822-1002 |
3.88e-20 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 90.70 E-value: 3.88e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 822 LRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIRPH-LGicpQYNVLFDMLTVEEHV 900
Cdd:PRK13539 18 FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHyLG---HRNAMKPALTVAENL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 901 WFYGRLKGVSAAAIdseqEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELL 980
Cdd:PRK13539 95 EFWAAFLGGEELDI----AAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELI 170
|
170 180
....*....|....*....|....*.
gi 564358039 981 LKYRE-GRTLILSTHH---LDEAELL 1002
Cdd:PRK13539 171 RAHLAqGGIVIAATHIplgLPGAREL 196
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
819-996 |
4.45e-20 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 91.45 E-value: 4.45e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 819 QPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQT-NMAAIRPHLGICPQYNVLFDMlTVE 897
Cdd:cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDlNLRWLRSQIGLVSQEPVLFDG-TIA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 898 EHVwFYGRLKgvsaaAIDSEQEHLIRD-------VGLIPKRDTQ----TRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTA 966
Cdd:cd03249 95 ENI-RYGKPD-----ATDEEVEEAAKKanihdfiMSLPDGYDTLvgerGSQLSGGQKQRIAIARALLRNPKILLLDEATS 168
|
170 180 190
....*....|....*....|....*....|
gi 564358039 967 GVDPASRRGIWELLLKYREGRTLILSTHHL 996
Cdd:cd03249 169 ALDAESEKLVQEALDRAMKGRTTIVIAHRL 198
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
803-1006 |
4.47e-20 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 96.25 E-value: 4.47e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 803 PGVSIRGLKKHFrGSPQpALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTN--MAAIRph 880
Cdd:COG3845 4 PALELRGITKRF-GGVV-ANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKPVRIRspRDAIA-- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 881 LGI--CPQYNVLFDMLTVEEHVWFY---GRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKlsVAI--AFV 953
Cdd:COG3845 80 LGIgmVHQHFMLVPNLTVAENIVLGlepTKGGRLDRKAARARIRELSERYGLDVDPDAKVEDLSVGEQQR--VEIlkALY 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 564358039 954 GGSRVVIMDEPTAGVDPASRRGIWELLLKYR-EGRTLILSTHHLDEAELLGDRV 1006
Cdd:COG3845 158 RGARILILDEPTAVLTPQEADELFEILRRLAaEGKSIIFITHKLREVMAIADRV 211
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
1813-2043 |
5.01e-20 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 94.02 E-value: 5.01e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1813 TQGDVLVLRDLTKvyRGQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAqEPSAAHR 1892
Cdd:PRK11432 2 TQKNFVVLKNITK--RFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVT-HRSIQQR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1893 SMGYCPQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVV 1972
Cdd:PRK11432 79 DICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1973 FLDEPTTGMDPSARRflwnNLLSVVRE-GRSVVLTS----HSMEECEALCTRLAIMVNGRFRCLGSAQHL----KSRFGA 2043
Cdd:PRK11432 159 LFDEPLSNLDANLRR----SMREKIRElQQQFNITSlyvtHDQSEAFAVSDTVIVMNKGKIMQIGSPQELyrqpASRFMA 234
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
1817-2064 |
6.56e-20 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 91.76 E-value: 6.56e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTkVYRGQRsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPS---AAHRS 1893
Cdd:PRK13548 2 MLEARNLS-VRLGGR-TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPaelARRRA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1894 MgyCPQSDAI-FDLLT------GRE-HLELFARLRGVPEAQVAQTALSGLvrlglpsyADRPAGTYSGGNKRK--LATAL 1963
Cdd:PRK13548 80 V--LPQHSSLsFPFTVeevvamGRApHGLSRAEDDALVAAALAQVDLAHL--------AGRDYPQLSGGEQQRvqLARVL 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1964 ALV----GDPAVVFLDEPTTGMDPS--------ARRFLWNNLLSVVregrsVVLtsHSMEECEALCTRLAIMVNGRFRCL 2031
Cdd:PRK13548 150 AQLwepdGPPRWLLLDEPTSALDLAhqhhvlrlARQLAHERGLAVI-----VVL--HDLNLAARYADRIVLLHQGRLVAD 222
|
250 260 270
....*....|....*....|....*....|....*....
gi 564358039 2032 GS------AQHLKSRFGAghtlTLRVPPDqPEPAIAFIV 2064
Cdd:PRK13548 223 GTpaevltPETLRRVYGA----DVLVQPH-PETGAPLVL 256
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
1820-2027 |
7.09e-20 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 93.22 E-value: 7.09e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1820 LRDLTKVYRGQRSP--AVDHLCLGIPPGECFGLLGVNGAGKtSTF-RMVTGDTLPSSGEAVLAGHNVAQEPS----AAHR 1892
Cdd:COG1135 4 LENLSKTFPTKGGPvtALDDVSLTIEKGEIFGIIGYSGAGK-STLiRCINLLERPTSGSVLVDGVDLTALSErelrAARR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1893 SMGYCPQSdaiFDLLTGR---EHLELFARLRGVPEAQVAQTALSGLVRLGLpsyADRpAGTY----SGGNKRKLATALAL 1965
Cdd:COG1135 83 KIGMIFQH---FNLLSSRtvaENVALPLEIAGVPKAEIRKRVAELLELVGL---SDK-ADAYpsqlSGGQKQRVGIARAL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564358039 1966 VGDPAVVFLDEPTTGMDP-SARRFLwnNLLSVVRE--GRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:COG1135 156 ANNPKVLLCDEATSALDPeTTRSIL--DLLKDINRelGLTIVLITHEMDVVRRICDRVAVLENGR 218
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
1827-2012 |
8.28e-20 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 89.22 E-value: 8.28e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1827 YRGQrsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHnvaqepsaahRSMGYCPQSDAIFDL 1906
Cdd:NF040873 2 YGGR--PVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRAGG----------ARVAYVPQRSEVPDS 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1907 L--TGRE--------HLELFARLRGVPEAQVAQTalsgLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDE 1976
Cdd:NF040873 70 LplTVRDlvamgrwaRRGLWRRLTRDDRAAVDDA----LERVGLADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDE 145
|
170 180 190
....*....|....*....|....*....|....*.
gi 564358039 1977 PTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEE 2012
Cdd:NF040873 146 PTTGLDAESRERIIALLAEEHARGATVVVVTHDLEL 181
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
1796-2029 |
1.08e-19 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 95.13 E-value: 1.08e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1796 EEDEDVVRERE---RVTKGATQG-DVLVLRDLTKVYrGQRsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLP 1871
Cdd:COG0488 290 EREEPPRRDKTveiRFPPPERLGkKVLELEGLSKSY-GDK-TLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEP 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1872 SSGEaVLAGHNVaqepsaahrSMGYCPQSDAIFDL-LTGREHLELFArlRGVPEAQVAQTalsgLVRLGL-PSYADRPAG 1949
Cdd:COG0488 368 DSGT-VKLGETV---------KIGYFDQHQEELDPdKTVLDELRDGA--PGGTEQEVRGY----LGRFLFsGDDAFKPVG 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1950 TYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLwNNLLSVVrEGrSVVLTSHSMEECEALCTRLAIMVNGRFR 2029
Cdd:COG0488 432 VLSGGEKARLALAKLLLSPPNVLLLDEPTNHLDIETLEAL-EEALDDF-PG-TVLLVSHDRYFLDRVATRILEFEDGGVR 508
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
1817-2028 |
1.10e-19 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 95.09 E-value: 1.10e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTKVYRGQRspAVDHLCLGIPPGECFGLLGVNGAGKtSTF-RMVTGDTLPSSGEAVLAGHNVA-QEPSAAHR-- 1892
Cdd:COG1129 4 LLEMRGISKSFGGVK--ALDGVSLELRPGEVHALLGENGAGK-STLmKILSGVYQPDSGEILLDGEPVRfRSPRDAQAag 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1893 -SMGYcpQSDAIFDLLT-------GREhlelFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALA 1964
Cdd:COG1129 81 iAIIH--QELNLVPNLSvaeniflGRE----PRRGGLIDWRAMRRRARELLARLGLDIDPDTPVGDLSVAQQQLVEIARA 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564358039 1965 LVGDPAVVFLDEPTTGMDPSARRflwnNLLSVVR----EGRSVVLTSHSMEECEALCTRLAIMVNGRF 2028
Cdd:COG1129 155 LSRDARVLILDEPTASLTEREVE----RLFRIIRrlkaQGVAIIYISHRLDEVFEIADRVTVLRDGRL 218
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
1842-2027 |
1.14e-19 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 90.02 E-value: 1.14e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1842 IPPGECFGLLGVNGAGKTSTFRMVTG---DTLPSSGEAVLAGhnvaQEPSAA--HRSMGYCPQSDAIFDLLTGREHLELF 1916
Cdd:cd03234 30 VESGQVMAILGSSGSGKTTLLDAISGrveGGGTTSGQILFNG----QPRKPDqfQKCVAYVRQDDILLPGLTVRETLTYT 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1917 ARLR-------GVPEAQVAQTALSGLvrlglpsyADRPAGTY-----SGGNKRKLATALALVGDPAVVFLDEPTTGMDPs 1984
Cdd:cd03234 106 AILRlprkssdAIRKKRVEDVLLRDL--------ALTRIGGNlvkgiSGGERRRVSIAVQLLWDPKVLILDEPTSGLDS- 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 564358039 1985 arrFLWNNLLSVV----REGRSVVLTSHS-MEECEALCTRLAIMVNGR 2027
Cdd:cd03234 177 ---FTALNLVSTLsqlaRRNRIVILTIHQpRSDLFRLFDRILLLSSGE 221
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
1837-2027 |
1.20e-19 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 89.47 E-value: 1.20e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1837 HLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNV-AQEPSAAHRSMGYcpQSDAIFDLLTGREH--L 1913
Cdd:cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVtAAPPADRPVSMLF--QENNLFAHLTVEQNvgL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1914 ELFARLRGVPEAQvaQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNL 1993
Cdd:cd03298 94 GLSPGLKLTAEDR--QAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLV 171
|
170 180 190
....*....|....*....|....*....|....*
gi 564358039 1994 LSVVRE-GRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:cd03298 172 LDLHAEtKMTVLMVTHQPEDAKRLAQRVVFLDNGR 206
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
1818-2027 |
1.23e-19 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 88.43 E-value: 1.23e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYRGQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAHRSM-GY 1896
Cdd:cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHvGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1897 CPQSDaifdlltgrehlELFArlrgvpeAQVAQTALsglvrlglpsyadrpagtySGGNKRKLATALALVGDPAVVFLDE 1976
Cdd:cd03246 81 LPQDD------------ELFS-------GSIAENIL-------------------SGGQRQRLGLARALYGNPRILVLDE 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 564358039 1977 PTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEAlCTRLAIMVNGR 2027
Cdd:cd03246 123 PNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLAS-ADRILVLEDGR 172
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
1845-2008 |
1.26e-19 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 89.09 E-value: 1.26e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1845 GECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAHRSMGYCPQSDAIFDLLTGREHLELFARLRGvpe 1924
Cdd:cd03231 26 GEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHS--- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1925 aqvAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVREGRSVV 2004
Cdd:cd03231 103 ---DEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVV 179
|
....
gi 564358039 2005 LTSH 2008
Cdd:cd03231 180 LTTH 183
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
820-996 |
1.32e-19 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 89.98 E-value: 1.32e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 820 PALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDV-QTNMAAIRPHLGICPQYNVLFDMlTVEE 898
Cdd:cd03254 17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIrDISRKSLRSMIGVVLQDTFLFSG-TIME 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 899 HVwFYGRL--------KGVSAAAIDSEQEHLIRDVglipkrDTQTRH----LSGGMQRKLSVAIAFVGGSRVVIMDEPTA 966
Cdd:cd03254 96 NI-RLGRPnatdeeviEAAKEAGAHDFIMKLPNGY------DTVLGEnggnLSQGERQLLAIARAMLRDPKILILDEATS 168
|
170 180 190
....*....|....*....|....*....|
gi 564358039 967 GVDPASRRGIWELLLKYREGRTLILSTHHL 996
Cdd:cd03254 169 NIDTETEKLIQEALEKLMKGRTSIIIAHRL 198
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
805-1012 |
1.33e-19 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 90.58 E-value: 1.33e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFRGspQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASI----------LGHDvQTNM 874
Cdd:PRK11264 4 IEVKNLVKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVgditidtarsLSQQ-KGLI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 875 AAIRPHLGICPQYNVLFDMLTVEEHVwFYGRL--KGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAF 952
Cdd:PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENI-IEGPVivKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARAL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564358039 953 VGGSRVVIMDEPTAGVDPASrrgIWELLLKYR----EGRTLILSTHHLDEAELLGDRVAMVASG 1012
Cdd:PRK11264 160 AMRPEVILFDEPTSALDPEL---VGEVLNTIRqlaqEKRTMVIVTHEMSFARDVADRAIFMDQG 220
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
1842-2085 |
1.35e-19 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 92.87 E-value: 1.35e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1842 IPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGhNVAQEPSA-----AH-RSMGYCPQSDAIFDLLTGREHLEL 1915
Cdd:TIGR02142 20 LPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNG-RTLFDSRKgiflpPEkRRIGYVFQEARLFPHLSVRGNLRY 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1916 FARLRGVPEAQVAQTALSGLvrLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLS 1995
Cdd:TIGR02142 99 GMKRARPSERRISFERVIEL--LGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLER 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1996 VVRE-GRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHLKSRFG--------AGHTLTLRVppDQPEPAIAFIVTT 2066
Cdd:TIGR02142 177 LHAEfGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDlpwlaredQGSLIEGVV--AEHDQHYGLTALR 254
|
250 260
....*....|....*....|....
gi 564358039 2067 FPDA-----ELREVHGSRLRFQLP 2085
Cdd:TIGR02142 255 LGGGhlwvpENLGPTGARLRLRVP 278
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
814-1020 |
1.63e-19 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 90.84 E-value: 1.63e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 814 FRGSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDV---QTNMAAIRPHLGIC---PQY 887
Cdd:PRK13638 9 FRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLdysKRGLLALRQQVATVfqdPEQ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 888 NVLFDmlTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAG 967
Cdd:PRK13638 89 QIFYT--DIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAG 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 564358039 968 VDPASRRGIWELLLK-YREGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSP 1020
Cdd:PRK13638 167 LDPAGRTQMIAIIRRiVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAP 220
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
1818-2027 |
1.75e-19 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 89.00 E-value: 1.75e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYrGQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAA----HRS 1893
Cdd:cd03292 1 IEFINVTKTY-PNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAipylRRK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1894 MGYCPQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVF 1973
Cdd:cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILI 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 564358039 1974 LDEPTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:cd03292 160 ADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGK 213
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
805-1007 |
2.10e-19 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 92.06 E-value: 2.10e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFRGSPQP--ALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQT----NMAAIR 878
Cdd:COG1135 2 IELENLSKTFPTKGGPvtALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTAlserELRAAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 879 PHLGICPQ-YNvLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGM-QRklsVAIA--FVG 954
Cdd:COG1135 82 RKIGMIFQhFN-LLSSRTVAENVALPLEIAGVPKAEIRKRVAELLELVGLSDKADAYPSQLSGGQkQR---VGIAraLAN 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 564358039 955 GSRVVIMDEPTAGVDPASRRGIWELLLKYRE--GRTLILSTHHLDEAELLGDRVA 1007
Cdd:COG1135 158 NPKVLLCDEATSALDPETTRSILDLLKDINRelGLTIVLITHEMDVVRRICDRVA 212
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
1844-2027 |
2.54e-19 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 88.51 E-value: 2.54e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1844 PGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLaGHNVAQEP------SAAHRSMGYCPQSDAIFDLLTGREHLELFA 1917
Cdd:cd03297 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVL-NGTVLFDSrkkinlPPQQRKIGLVFQQYALFPHLNVRENLAFGL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1918 RLRGVPEAQVAQTALsgLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVV 1997
Cdd:cd03297 101 KRKRNREDRISVDEL--LDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIK 178
|
170 180 190
....*....|....*....|....*....|.
gi 564358039 1998 RE-GRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:cd03297 179 KNlNIPVIFVTHDLSEAEYLADRIVVMEDGR 209
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
815-1020 |
5.03e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 89.84 E-value: 5.03e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 815 RGSP--QPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDV--QTNMAAIRP---HLGICPQY 887
Cdd:PRK13646 14 KGTPyeHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITIthKTKDKYIRPvrkRIGMVFQF 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 888 --NVLFDMlTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLipKRDTQTR---HLSGGMQRKLSVAIAFVGGSRVVIMD 962
Cdd:PRK13646 94 peSQLFED-TVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGF--SRDVMSQspfQMSGGQMRKIAIVSILAMNPDIIVLD 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 963 EPTAGVDPASRRGIWELL--LKYREGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSP 1020
Cdd:PRK13646 171 EPTAGLDPQSKRQVMRLLksLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSP 230
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
816-1020 |
5.07e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 89.38 E-value: 5.07e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 816 GSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDV--QTNMAAIRPHLGICPQY--NVLF 891
Cdd:PRK13633 20 STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTsdEENLWDIRNKAGMVFQNpdNQIV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 892 DMLtVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGmqRKLSVAIAFVGGSR--VVIMDEPTAGVD 969
Cdd:PRK13633 100 ATI-VEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGG--QKQRVAIAGILAMRpeCIIFDEPTAMLD 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 564358039 970 PASRR----GIWELLLKYreGRTLILSTHHLDEAeLLGDRVAMVASGSLCCCGSP 1020
Cdd:PRK13633 177 PSGRRevvnTIKELNKKY--GITIILITHYMEEA-VEADRIIVMDSGKVVMEGTP 228
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
803-1010 |
5.77e-19 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 88.26 E-value: 5.77e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 803 PGVSIRGLKKHFRGSPQP--ALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVqTNM-----A 875
Cdd:COG4181 7 PIIELRGLTKTVGTGAGEltILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDL-FALdedarA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 876 AIRP-HLGICPQYNVLFDMLTVEEHVWFYGRLKGVSAAAidSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVG 954
Cdd:COG4181 86 RLRArHVGFVFQSFQLLPTLTALENVMLPLELAGRRDAR--ARARALLERVGLGHRLDHYPAQLSGGEQQRVALARAFAT 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 564358039 955 GSRVVIMDEPTAGVDPASRRGIWELL--LKYREGRTLILSTHHLDEAELLGDRVAMVA 1010
Cdd:COG4181 164 EPAILFADEPTGNLDAATGEQIIDLLfeLNRERGTTLVLVTHDPALAARCDRVLRLRA 221
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
788-1020 |
6.58e-19 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 92.94 E-value: 6.58e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 788 QDPKVLVEEPPpglvpgVSIRGLKKHF----RGSPQpALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSA 863
Cdd:TIGR03269 269 KECEVEVGEPI------IKVRNVSKRYisvdRGVVK-AVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEV 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 864 SILGHDVQTNMAAIRP--------HLGICPQYNVLFDMLTVEEHVwfygrlkgVSAAAIDSEQE-------HLIRDVGLI 928
Cdd:TIGR03269 342 NVRVGDEWVDMTKPGPdgrgrakrYIGILHQEYDLYPHRTVLDNL--------TEAIGLELPDElarmkavITLKMVGFD 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 929 PKR-----DTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELLLKYRE--GRTLILSTHHLDEAEL 1001
Cdd:TIGR03269 414 EEKaeeilDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREemEQTFIIVSHDMDFVLD 493
|
250
....*....|....*....
gi 564358039 1002 LGDRVAMVASGSLCCCGSP 1020
Cdd:TIGR03269 494 VCDRAALMRDGKIVKIGDP 512
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
1821-2053 |
6.76e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 89.09 E-value: 6.76e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1821 RDLTKVYRGQRSpAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEP-SAAHRSMGYCPQ 1899
Cdd:PRK13652 7 RDLCYSYSGSKE-ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENiREVRKFVGLVFQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1900 S--DAIF------DLLTGREHLelfarlrGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAV 1971
Cdd:PRK13652 86 NpdDQIFsptveqDIAFGPINL-------GLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1972 VFLDEPTTGMDPSARR--FLWNNLLSvVREGRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHLKSRFGAGHTLTL 2049
Cdd:PRK13652 159 LVLDEPTAGLDPQGVKelIDFLNDLP-ETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLARVHL 237
|
....
gi 564358039 2050 RVPP 2053
Cdd:PRK13652 238 DLPS 241
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
1817-2009 |
7.77e-19 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 86.85 E-value: 7.77e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTkVYRGQRsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHnvAQEPSAAHRSMGY 1896
Cdd:PRK13539 2 MLEGEDLA-CVRGGR-VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGG--DIDDPDVAEACHY 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1897 CPQSDAIFDLLTGREHLELFARLRGVPEAQVAQTalsgLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDE 1976
Cdd:PRK13539 78 LGHRNAMKPALTVAENLEFWAAFLGGEELDIAAA----LEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDE 153
|
170 180 190
....*....|....*....|....*....|...
gi 564358039 1977 PTTGMDPSARRFLWNNLLSVVREGRSVVLTSHS 2009
Cdd:PRK13539 154 PTAALDAAAVALFAELIRAHLAQGGIVIAATHI 186
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
1796-2037 |
9.01e-19 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 92.51 E-value: 9.01e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1796 EEDEDVVRERERvTKGATQGDVLVLRDLTkVYRGQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGE 1875
Cdd:COG4988 316 DAPEPAAPAGTA-PLPAAGPPSIELEDVS-FSYPGGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGS 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1876 AVLAGHNVAQEPSAA-HRSMGYCPQSDAIFDLlTGREHLeLFARlRGVPEAQVAQ----TALSGLVRlGLPSYADRPAG- 1949
Cdd:COG4988 394 ILINGVDLSDLDPASwRRQIAWVPQNPYLFAG-TIRENL-RLGR-PDASDEELEAaleaAGLDEFVA-ALPDGLDTPLGe 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1950 ---TYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSvVREGRSVVLTSHSMEECeALCTRLAIMVNG 2026
Cdd:COG4988 470 ggrGLSGGQAQRLALARALLRDAPLLLLDEPTAHLDAETEAEILQALRR-LAKGRTVILITHRLALL-AQADRILVLDDG 547
|
250
....*....|.
gi 564358039 2027 RFRCLGSAQHL 2037
Cdd:COG4988 548 RIVEQGTHEEL 558
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
806-1019 |
9.26e-19 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 87.86 E-value: 9.26e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 806 SIRGLKKHFRGSPqpALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVqTNM--AAIrPHLGI 883
Cdd:COG4674 12 YVEDLTVSFDGFK--ALNDLSLYVDPGELRVIIGPNGAGKTTLMDVITGKTRPDSGSVLFGGTDL-TGLdeHEI-ARLGI 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 884 C-----PqyNVlFDMLTVEEH----------VW--FYGRLKGVSAAAIDseqeHLIRDVGLIPKRDTQTRHLSGGMQRKL 946
Cdd:COG4674 88 GrkfqkP--TV-FEELTVFENlelalkgdrgVFasLFARLTAEERDRIE----EVLETIGLTDKADRLAGLLSHGQKQWL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564358039 947 SVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELLLKYREGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGS 1019
Cdd:COG4674 161 EIGMLLAQDPKLLLLDEPVAGMTDAETERTAELLKSLAGKHSVVVVEHDMEFVRQIARKVTVLHQGSVLAEGS 233
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
785-1031 |
9.59e-19 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 90.66 E-value: 9.59e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 785 PAPQdpkvlvEEPPPGLVPGVSIRGLKKHFRGspQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSAS 864
Cdd:PRK11607 6 PRPQ------AKTRKALTPLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIM 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 865 ILGHDVQTNMAAIRPhLGICPQYNVLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQR 944
Cdd:PRK11607 78 LDGVDLSHVPPYQRP-INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQ 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 945 KLSVAIAFVGGSRVVIMDEPTAGVDPASR-RGIWELL-LKYREGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSPLF 1022
Cdd:PRK11607 157 RVALARSLAKRPKLLLLDEPMGALDKKLRdRMQLEVVdILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEE 236
|
....*....
gi 564358039 1023 LRRHLGCGY 1031
Cdd:PRK11607 237 IYEHPTTRY 245
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
1818-2042 |
1.07e-18 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 87.83 E-value: 1.07e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYRGQrsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVaQEPSAAHrsmGYC 1897
Cdd:PRK11248 2 LQISHLYADYGGK--PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPV-EGPGAER---GVV 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1898 PQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEP 1977
Cdd:PRK11248 76 FQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEP 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564358039 1978 TTGMDPSARRFLWNNLLSVVRE-GRSVVLTSHSMEECEALCTRLAIMVNGRFRCLgsaQHLKSRFG 2042
Cdd:PRK11248 156 FGALDAFTREQMQTLLLKLWQEtGKQVLLITHDIEEAVFMATELVLLSPGPGRVV---ERLPLNFA 218
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
805-996 |
1.22e-18 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 87.29 E-value: 1.22e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFRGSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQT-NMAAIRPHLGI 883
Cdd:cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDyTLASLRRQIGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 884 CPQYNVLFDMlTVEEHVwFYGRL----KGVSAAA--------IDSEQEHLIRDVGlipKRDTQtrhLSGGMQRKLSVAIA 951
Cdd:cd03251 81 VSQDVFLFND-TVAENI-AYGRPgatrEEVEEAAraanahefIMELPEGYDTVIG---ERGVK---LSGGQRQRIAIARA 152
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 564358039 952 FVGGSRVVIMDEPTAGVDPASRRGIWELLLKYREGRTLILSTHHL 996
Cdd:cd03251 153 LLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRL 197
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
1818-2035 |
1.42e-18 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 87.48 E-value: 1.42e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTkVYRGQRsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPS---AAHRS- 1893
Cdd:COG4559 2 LEAENLS-VRLGGR-TLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAWSPwelARRRAv 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1894 MgycPQSDAI-FDLlTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRK--LATALALV---- 1966
Cdd:COG4559 80 L---PQHSSLaFPF-TVEEVVALGRAPHGSSAAQDRQIVREALALVGLAHLAGRSYQTLSGGEQQRvqLARVLAQLwepv 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1967 -GDPAVVFLDEPTTGMDPS--------ARRFlwnnllsvVREGRSVV-------LTSHsmeeceaLCTRLAIMVNGRFRC 2030
Cdd:COG4559 156 dGGPRWLFLDEPTSALDLAhqhavlrlARQL--------ARRGGGVVavlhdlnLAAQ-------YADRILLLHQGRLVA 220
|
....*
gi 564358039 2031 LGSAQ 2035
Cdd:COG4559 221 QGTPE 225
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
1832-2037 |
2.55e-18 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 89.71 E-value: 2.55e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1832 SPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAHRS-----MGYCPQSDAIFDL 1906
Cdd:PRK10070 41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREvrrkkIAMVFQSFALMPH 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1907 LTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSAR 1986
Cdd:PRK10070 121 MTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIR 200
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 564358039 1987 RFLWNNLLSV-VREGRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHL 2037
Cdd:PRK10070 201 TEMQDELVKLqAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEI 252
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
805-1020 |
3.06e-18 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 87.38 E-value: 3.06e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFRGSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDV-QTNMAAIRPHLGI 883
Cdd:PRK13635 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLsEETVWDVRRQVGM 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 884 CPQY-NVLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGmqRKLSVAIAFVGGSR--VVI 960
Cdd:PRK13635 86 VFQNpDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGG--QKQRVAIAGVLALQpdIII 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564358039 961 MDEPTAGVDPASRRGIWELL--LKYREGRTLILSTHHLDEAeLLGDRVAMVASGSLCCCGSP 1020
Cdd:PRK13635 164 LDEATSMLDPRGRREVLETVrqLKEQKGITVLSITHDLDEA-AQADRVIVMNKGEILEEGTP 224
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
1817-2041 |
3.80e-18 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 86.61 E-value: 3.80e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTKVYRGQRS-PAVDhlcLGIPPGECFGLLGVNGAGKTSTFR----MVTGDTLPSSgEAVLAGHNVAQE----- 1886
Cdd:PRK09984 4 IIRVEKLAKTFNQHQAlHAVD---LNIHHGEMVALLGPSGSGKSTLLRhlsgLITGDKSAGS-HIELLGRTVQREgrlar 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1887 ---PSAAHrsMGYCPQSDAIFDLLTGREHLeLFARLRGVP---------EAQVAQTALSGLVRLGLPSYADRPAGTYSGG 1954
Cdd:PRK09984 80 dirKSRAN--TGYIFQQFNLVNRLSVLENV-LIGALGSTPfwrtcfswfTREQKQRALQALTRVGMVHFAHQRVSTLSGG 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1955 NKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVR-EGRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGS 2033
Cdd:PRK09984 157 QQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQnDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGS 236
|
....*....
gi 564358039 2034 AQHLKS-RF 2041
Cdd:PRK09984 237 SQQFDNeRF 245
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
1840-2036 |
4.06e-18 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 85.84 E-value: 4.06e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1840 LGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGH--NVAQEPSAA-----HRSMGYCPQSDAIFDLLTGREH 1912
Cdd:PRK11124 23 LDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNhfDFSKTPSDKairelRRNVGMVFQQYNLWPHLTVQQN 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1913 L-ELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSarrfLWN 1991
Cdd:PRK11124 103 LiEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPE----ITA 178
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 564358039 1992 NLLSVVRE----GRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQH 2036
Cdd:PRK11124 179 QIVSIIRElaetGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1817-2027 |
4.68e-18 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 87.42 E-value: 4.68e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTKVYRGQRSP--AVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTG---DTLPSSGEAVLAGHNVAQEPSAAH 1891
Cdd:COG0444 1 LLEVRNLKVYFPTRRGVvkAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGllpPPGITSGEILFDGEDLLKLSEKEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1892 RS-----MGYCPQsDAI--FD-LLTGREHL-ELFARLRGVPEAQVAQTALSGLVRLGLPSYADRpAGTY----SGGNKRK 1958
Cdd:COG0444 81 RKirgreIQMIFQ-DPMtsLNpVMTVGDQIaEPLRIHGGLSKAEARERAIELLERVGLPDPERR-LDRYphelSGGMRQR 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1959 LATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVRE-GRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:COG0444 159 VMIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRElGLAILFITHDLGVVAEIADRVAVMYAGR 228
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
1818-2046 |
5.66e-18 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 90.19 E-value: 5.66e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYRGQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQ-EPSAAHRSMGY 1896
Cdd:COG4618 331 LSVENLTVVPPGSKRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQwDREELGRHIGY 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1897 CPQSdaifdlltgrehLELF--------ARLRGVPEAQVAQTA-LSG---LVrLGLPS-YADR--PAGTY-SGGNKRKLA 1960
Cdd:COG4618 411 LPQD------------VELFdgtiaeniARFGDADPEKVVAAAkLAGvheMI-LRLPDgYDTRigEGGARlSGGQRQRIG 477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1961 TALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMeecEAL--CTRLAIMVNGRFRCLGSAQHLK 2038
Cdd:COG4618 478 LARALYGDPRLVVLDEPNSNLDDEGEAALAAAIRALKARGATVVVITHRP---SLLaaVDKLLVLRDGRVQAFGPRDEVL 554
|
....*...
gi 564358039 2039 SRFGAGHT 2046
Cdd:COG4618 555 ARLARPAA 562
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
807-1014 |
7.29e-18 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 87.55 E-value: 7.29e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 807 IRGLKKHFRGSPQP--ALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDV----QTNMAAIRPH 880
Cdd:PRK11153 4 LKNISKVFPQGGRTihALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLtalsEKELRKARRQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 881 LGICPQYnvlFDML---TVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGM-QRklsVAIAFVGGS 956
Cdd:PRK11153 84 IGMIFQH---FNLLssrTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQkQR---VAIARALAS 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564358039 957 R--VVIMDEPTAGVDPASRRGIWELLLKY-RE-GRTLILSTHHLDEAELLGDRVAMVASGSL 1014
Cdd:PRK11153 158 NpkVLLCDEATSALDPATTRSILELLKDInRElGLTIVLITHEMDVVKRICDRVAVIDAGRL 219
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
810-1020 |
9.30e-18 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 84.95 E-value: 9.30e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 810 LKKHFRGspQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQ--TNMAAIRPHLGICPQY 887
Cdd:PRK10895 9 LAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISllPLHARARRGIGYLPQE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 888 NVLFDMLTVeehvwfYGRLKGVSAAAID--SEQ-----EHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVI 960
Cdd:PRK10895 87 ASIFRRLSV------YDNLMAVLQIRDDlsAEQredraNELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFIL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564358039 961 MDEPTAGVDPASRRGIWELLLKYRE-GRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSP 1020
Cdd:PRK10895 161 LDEPFAGVDPISVIDIKRIIEHLRDsGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTP 221
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
820-1002 |
1.06e-17 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 83.56 E-value: 1.06e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 820 PALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIRPHLGICPQYNVLFDMLTVEEH 899
Cdd:TIGR01189 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRDEPHENILYLGHLPGLKPELSALEN 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 900 VWFYGRLKGVSAAAIdseqEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWEL 979
Cdd:TIGR01189 94 LHFWAAIHGGAQRTI----EDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTTALDKAGVALLAGL 169
|
170 180
....*....|....*....|....*..
gi 564358039 980 LLKYRE-GRTLILSTHH---LDEAELL 1002
Cdd:TIGR01189 170 LRAHLArGGIVLLTTHQdlgLVEAREL 196
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
805-1020 |
1.57e-17 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 84.37 E-value: 1.57e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFrgSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMA---AIRPHL 881
Cdd:PRK09493 2 IEFKNVSKHF--GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVderLIRQEA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 882 GICPQYNVLFDMLTVEEHVWFyG--RLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVV 959
Cdd:PRK09493 80 GMVFQQFYLFPHLTALENVMF-GplRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLM 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564358039 960 IMDEPTAGVDPASRRgiwELLLKYR----EGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSP 1020
Cdd:PRK09493 159 LFDEPTSALDPELRH---EVLKVMQdlaeEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDP 220
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
819-1012 |
1.61e-17 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 84.37 E-value: 1.61e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 819 QPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAairpHLGICPQYNVLFDMLTVEE 898
Cdd:PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGA----ERGVVFQNEGLLPWRNVQD 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 899 HVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWE 978
Cdd:PRK11248 90 NVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQT 169
|
170 180 190
....*....|....*....|....*....|....*.
gi 564358039 979 LLLK--YREGRTLILSTHHLDEAELLGDRVAMVASG 1012
Cdd:PRK11248 170 LLLKlwQETGKQVLLITHDIEEAVFMATELVLLSPG 205
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
1840-2026 |
1.73e-17 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 83.67 E-value: 1.73e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1840 LGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVaQEPsAAHRSMGYcpQSDAIFDLLTGREHLELFAR- 1918
Cdd:TIGR01184 6 LTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQI-TEP-GPDRMVVF--QNYSLLPWLTVRENIALAVDr 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1919 -LRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVV 1997
Cdd:TIGR01184 82 vLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIW 161
|
170 180 190
....*....|....*....|....*....|
gi 564358039 1998 REGR-SVVLTSHSMEECEALCTRLAIMVNG 2026
Cdd:TIGR01184 162 EEHRvTVLMVTHDVDEALLLSDRVVMLTNG 191
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
819-1024 |
1.97e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 84.78 E-value: 1.97e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 819 QPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDV-QTNMAAIRPHLGICPQY-NVLFDMLTV 896
Cdd:PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLtEENVWDIRHKIGMVFQNpDNQFVGATV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 897 EEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGmqRKLSVAIAFVGGSR--VVIMDEPTAGVDPASRR 974
Cdd:PRK13650 100 EDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGG--QKQRVAIAGAVAMRpkIIILDEATSMLDPEGRL 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 564358039 975 GIWELLLKYRE--GRTLILSTHHLDEAElLGDRVAMVASGSLCCCGSP--LFLR 1024
Cdd:PRK13650 178 ELIKTIKGIRDdyQMTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPreLFSR 230
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
822-994 |
2.08e-17 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 88.63 E-value: 2.08e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 822 LRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQT----NMAAI-RPHLGICPQYNVLFDMLTV 896
Cdd:PRK10535 24 LKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATldadALAQLrREHFGFIFQRYHLLSHLTA 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 897 EEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGI 976
Cdd:PRK10535 104 AQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEV 183
|
170
....*....|....*....
gi 564358039 977 WELLLKYRE-GRTLILSTH 994
Cdd:PRK10535 184 MAILHQLRDrGHTVIIVTH 202
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
803-1009 |
4.04e-17 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 83.44 E-value: 4.04e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 803 PGVSIRGLKKHFrgSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILG-----HDVQTNMAAI 877
Cdd:PRK11701 5 PLLSVRGLTKLY--GPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMrdgqlRDLYALSEAE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 878 RPHL-----GICPQY-------------NV---LfdMLTVEEHvwfYGRLKgvsAAAIDseqehLIRDVGLIPKR-DTQT 935
Cdd:PRK11701 83 RRRLlrtewGFVHQHprdglrmqvsaggNIgerL--MAVGARH---YGDIR---ATAGD-----WLERVEIDAARiDDLP 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564358039 936 RHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELL--LKYREGRTLILSTHHLDEAELLGDRVaMV 1009
Cdd:PRK11701 150 TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLrgLVRELGLAVVIVTHDLAVARLLAHRL-LV 224
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
804-1028 |
4.19e-17 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 85.17 E-value: 4.19e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 804 GVSIRGLKKHFrgSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTlSILSGLFPPSSGSASILGHDVQTNMAAIRPHLGI 883
Cdd:NF000106 13 AVEVRGLVKHF--GEVKAVDGVDLDVREGTVLGVLGP*GAA**RG-ALPAHV*GPDAGRRPWRF*TWCANRRALRRTIG* 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 884 C-PQYNVLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMD 962
Cdd:NF000106 90 HrPVR*GRRESFSGRENLYMIGR*LDLSRKDARARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLYLD 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564358039 963 EPTAGVDPASRRGIW-ELLLKYREGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSPLFLRRHLG 1028
Cdd:NF000106 170 EPTTGLDPRTRNEVWdEVRSMVRDGATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDELKTKVG 236
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
821-1020 |
4.91e-17 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 85.86 E-value: 4.91e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 821 ALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAA-----IRPHLGICPQYNVLFDMLT 895
Cdd:PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAelrevRRKKIAMVFQSFALMPHMT 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 896 VEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRG 975
Cdd:PRK10070 123 VLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTE 202
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 564358039 976 IWELLLKY--REGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSP 1020
Cdd:PRK10070 203 MQDELVKLqaKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTP 249
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
803-1012 |
5.00e-17 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 82.62 E-value: 5.00e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 803 PGVSIRGLKKHFrGSPQpALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAA--IRPH 880
Cdd:PRK11614 4 VMLSFDKVSAHY-GKIQ-ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAkiMREA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 881 LGICPQYNVLFDMLTVEEHVWFYGRLkgvsaAAIDSEQEHLIRDVGLIP----KRDTQTRHLSGGMQRKLSVAIAFVGGS 956
Cdd:PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFF-----AERDQFQERIKWVYELFPrlheRRIQRAGTMSGGEQQMLAIGRALMSQP 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 564358039 957 RVVIMDEPTAGVDPASRRGIWELLLKYR-EGRTLILSTHHLDEAELLGDRVAMVASG 1012
Cdd:PRK11614 157 RLLLLDEPSLGLAPIIIQQIFDTIEQLReQGMTIFLVEQNANQALKLADRGYVLENG 213
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
1840-2029 |
5.69e-17 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 82.13 E-value: 5.69e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1840 LGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQ---EPSAAHRS--MGYCPQSDAIFDLLTGREHLE 1914
Cdd:PRK10584 31 LVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQmdeEARAKLRAkhVGFVFQSFMLIPTLNALENVE 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1915 LFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLL 1994
Cdd:PRK10584 111 LPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLF 190
|
170 180 190
....*....|....*....|....*....|....*.
gi 564358039 1995 SVVRE-GRSVVLTSHSmEECEALCTRLAIMVNGRFR 2029
Cdd:PRK10584 191 SLNREhGTTLILVTHD-LQLAARCDRRLRLVNGQLQ 225
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
803-1019 |
6.03e-17 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 86.80 E-value: 6.03e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 803 PGVSIRGLKKHFRGSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQT-NMAAIRPHL 881
Cdd:PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADySEAALRQAI 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 882 GICPQYNVLFDMlTVEEHvwfygrLKGVSAAAIDSEQEHLIRDVGL------IPKRDTQT----RHLSGGMQRKLSVAIA 951
Cdd:PRK11160 417 SVVSQRVHLFSA-TLRDN------LLLAAPNASDEALIEVLQQVGLeklledDKGLNAWLgeggRQLSGGEQRRLGIARA 489
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564358039 952 FVGGSRVVIMDEPTAGVDPASRRGIWELLLKYREGRTLILSTHHLDEAELLgDRVAMVASGSLCCCGS 1019
Cdd:PRK11160 490 LLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQF-DRICVMDNGQIIEQGT 556
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
1818-2015 |
8.38e-17 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 81.37 E-value: 8.38e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTkVYRGQRsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGdTLPS----SGEAVLAGHNVAQEPsAAHRS 1893
Cdd:COG4136 2 LSLENLT-ITLGGR-PLLAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAG-TLSPafsaSGEVLLNGRRLTALP-AEQRR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1894 MGYCPQSDAIFDLLTGREHLeLFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVF 1973
Cdd:COG4136 78 IGILFQDDLLFPHLSVGENL-AFALPPTIGRAQRRARVEQALEEAGLAGFADRDPATLSGGQRARVALLRALLAEPRALL 156
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 564358039 1974 LDEPTTGMDPSAR----RFLWNnllSVVREGRSVVLTSHSMEECEA 2015
Cdd:COG4136 157 LDEPFSKLDAALRaqfrEFVFE---QIRQRGIPALLVTHDEEDAPA 199
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
1818-2009 |
8.54e-17 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 86.26 E-value: 8.54e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYRGQrSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEP-SAAHRSMGY 1896
Cdd:TIGR02868 335 LELRDLSAGYPGA-PPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDqDEVRRRVSV 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1897 CPQSDAIFDLlTGREHLeLFARlRGVPEAQVAqTALSGlVRLG-----LPSYADRPAG----TYSGGNKRKLATALALVG 1967
Cdd:TIGR02868 414 CAQDAHLFDT-TVRENL-RLAR-PDATDEELW-AALER-VGLAdwlraLPDGLDTVLGeggaRLSGGERQRLALARALLA 488
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 564358039 1968 DPAVVFLDEPTTGMDPSARRFLWNNLLSVVrEGRSVVLTSHS 2009
Cdd:TIGR02868 489 DAPILLLDEPTEHLDAETADELLEDLLAAL-SGRTVVLITHH 529
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
805-1033 |
1.53e-16 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 81.38 E-value: 1.53e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFRGSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQT-NMAAIRPHLGI 883
Cdd:cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALaDPAWLRRQVGV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 884 CPQYNVLFDMlTVEEHVWFYGR---LKGVSAAAIDSEQEHLIRDvgLIPKRDT----QTRHLSGGMQRKLSVAIAFVGGS 956
Cdd:cd03252 81 VLQENVLFNR-SIRDNIALADPgmsMERVIEAAKLAGAHDFISE--LPEGYDTivgeQGAGLSGGQRQRIAIARALIHNP 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564358039 957 RVVIMDEPTAGVDPASRRGIWELLLKYREGRTLILSTHHLdEAELLGDRVAMVASGSLCCCGSPLFLRRHLGCGYYL 1033
Cdd:cd03252 158 RILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRL-STVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYL 233
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
822-994 |
1.92e-16 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 80.59 E-value: 1.92e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 822 LRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVqTNM-----AAIRP-HLGICPQYNVLFDMLT 895
Cdd:PRK10584 26 LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPL-HQMdeearAKLRAkHVGFVFQSFMLIPTLN 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 896 VEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRG 975
Cdd:PRK10584 105 ALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDK 184
|
170 180
....*....|....*....|.
gi 564358039 976 IWELL--LKYREGRTLILSTH 994
Cdd:PRK10584 185 IADLLfsLNREHGTTLILVTH 205
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
810-994 |
2.17e-16 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 80.30 E-value: 2.17e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 810 LKKHFRGSPQpALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDV----QTNMAAIRPHLGICP 885
Cdd:PRK10908 7 VSKAYLGGRQ-ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDItrlkNREVPFLRRQIGMIF 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 886 QYNVLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPT 965
Cdd:PRK10908 86 QDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPT 165
|
170 180 190
....*....|....*....|....*....|
gi 564358039 966 AGVDPASRRGIWELLLKY-REGRTLILSTH 994
Cdd:PRK10908 166 GNLDDALSEGILRLFEEFnRVGVTVLMATH 195
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
1818-2011 |
2.28e-16 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 84.65 E-value: 2.28e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYRGqRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQ-EPSAAHRSMGY 1896
Cdd:TIGR02857 322 LEFSGVSVAYPG-RRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADaDADSWRDQIAW 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1897 CPQSDAIFDlLTGREHLeLFARlRGVPEAQVAQTA-LSGLVRL--GLPSYADRPAGT----YSGGNKRKLATALALVGDP 1969
Cdd:TIGR02857 401 VPQHPFLFA-GTIAENI-RLAR-PDASDAEIREALeRAGLDEFvaALPQGLDTPIGEggagLSGGQAQRLALARAFLRDA 477
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 564358039 1970 AVVFLDEPTTGMDPSARRFLWNNLLSvVREGRSVVLTSHSME 2011
Cdd:TIGR02857 478 PLLLLDEPTAHLDAETEAEVLEALRA-LAQGRTVLLVTHRLA 518
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
825-1014 |
2.38e-16 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 80.03 E-value: 2.38e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 825 LNLDF-YEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASiLGHDV------QTNMAAIRPHLGICPQYNVLFDMLTVE 897
Cdd:cd03297 15 LKIDFdLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIV-LNGTVlfdsrkKINLPPQQRKIGLVFQQYALFPHLNVR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 898 EHVWFygRLKGVSAAAI-DSEQEHLIRdVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGI 976
Cdd:cd03297 94 ENLAF--GLKRKRNREDrISVDELLDL-LGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQL 170
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 564358039 977 WELL--LKYREGRTLILSTHHLDEAELLGDRVAMVASGSL 1014
Cdd:cd03297 171 LPELkqIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRL 210
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
1814-2028 |
2.74e-16 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 84.58 E-value: 2.74e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1814 QGDVLVLRDLTKVYRGQRspAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAA--- 1890
Cdd:PRK11288 1 SSPYLSFDGIGKTFPGVK--ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAala 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1891 ------HRSMGYCPQSDAIFDLLTGRehleLFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALA 1964
Cdd:PRK11288 79 agvaiiYQELHLVPEMTVAENLYLGQ----LPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKA 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564358039 1965 LVGDPAVVFLDEPTTGMdpSARRFlwNNLLSVVR----EGRSVVLTSHSMEECEALCTRLAIMVNGRF 2028
Cdd:PRK11288 155 LARNARVIAFDEPTSSL--SAREI--EQLFRVIRelraEGRVILYVSHRMEEIFALCDAITVFKDGRY 218
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
806-1014 |
4.88e-16 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 83.53 E-value: 4.88e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 806 SIRGLkkhfrgSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQ--TNMAAIRPHLGI 883
Cdd:COG1129 258 EVEGL------SVGGVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPVRirSPRDAIRAGIAY 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 884 CP---QYNVLFDMLTVEEHVWF-----YGRLKGVSAAAIDSEQEHLIRDVGL-IPKRDTQTRHLSGGMQRKlsVAIA--F 952
Cdd:COG1129 332 VPedrKGEGLVLDLSIRENITLasldrLSRGGLLDRRRERALAEEYIKRLRIkTPSPEQPVGNLSGGNQQK--VVLAkwL 409
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564358039 953 VGGSRVVIMDEPTAGVDPASRRGIWELLLKY-REGRTLILSTHHLDeaELLG--DRVAMVASGSL 1014
Cdd:COG1129 410 ATDPKVLILDEPTRGIDVGAKAEIYRLIRELaAEGKAVIVISSELP--ELLGlsDRILVMREGRI 472
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
1812-2051 |
5.13e-16 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 83.72 E-value: 5.13e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1812 ATQGDvLVLRDLTKVYRGQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAH 1891
Cdd:PRK11160 334 ADQVS-LTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAAL 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1892 RS-MGYCPQSDAIFDlLTGREHLELFArlrgvPEAQVAQtaLSG-LVRLGLPSYADRPAG----------TYSGGNKRKL 1959
Cdd:PRK11160 413 RQaISVVSQRVHLFS-ATLRDNLLLAA-----PNASDEA--LIEvLQQVGLEKLLEDDKGlnawlgeggrQLSGGEQRRL 484
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1960 ATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVReGRSVVLTSH---SMEECEALCtrlaIMVNGRFRCLGSAQH 2036
Cdd:PRK11160 485 GIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ-NKTVLMITHrltGLEQFDRIC----VMDNGQIIEQGTHQE 559
|
250
....*....|....*
gi 564358039 2037 LKSRFGAGHTLTLRV 2051
Cdd:PRK11160 560 LLAQQGRYYQLKQRL 574
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
1817-2027 |
5.64e-16 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 79.40 E-value: 5.64e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTKVYRGQRSP--AVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQ---EPSAAH 1891
Cdd:COG4181 8 IIELRGLTKTVGTGAGEltILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLFAldeDARARL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1892 RS--MGYCPQSdaiFDL---LTGREHLELFARLRGVPEAQvaQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALV 1966
Cdd:COG4181 88 RArhVGFVFQS---FQLlptLTALENVMLPLELAGRRDAR--ARARALLERVGLGHRLDHYPAQLSGGEQQRVALARAFA 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564358039 1967 GDPAVVFLDEPTTGMDPSARRFLWNNLLSVVRE-GRSVVLTSHSmEECEALCTRLAIMVNGR 2027
Cdd:COG4181 163 TEPAILFADEPTGNLDAATGEQIIDLLFELNRErGTTLVLVTHD-PALAARCDRVLRLRAGR 223
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
1840-2039 |
6.02e-16 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 79.67 E-value: 6.02e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1840 LGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGH--NVAQEPSAA-----HRSMGYCPQSDAIFDLLTGREH 1912
Cdd:COG4161 23 LECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHqfDFSQKPSEKairllRQKVGMVFQQYNLWPHLTVMEN 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1913 L-ELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSarrfLWN 1991
Cdd:COG4161 103 LiEAPCKVLGLSKEQAREKAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPE----ITA 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 564358039 1992 NLLSVVRE----GRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHLKS 2039
Cdd:COG4161 179 QVVEIIRElsqtGITQVIVTHEVEFARKVASQVVYMEKGRIIEQGDASHFTQ 230
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
802-1006 |
6.14e-16 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 83.42 E-value: 6.14e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 802 VPGVSIRGLKKHFRGSPqpALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQ--TNMAAIRP 879
Cdd:PRK11288 2 SPYLSFDGIGKTFPGVK--ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRfaSTTAALAA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 880 HLGICPQYNVLFDMLTVEEHVWFyGRLKGvSAAAIDSEQehLIRDVGLIPKR-------DTQTRHLSGGMQRKLSVAIAF 952
Cdd:PRK11288 80 GVAIIYQELHLVPEMTVAENLYL-GQLPH-KGGIVNRRL--LNYEAREQLEHlgvdidpDTPLKYLSIGQRQMVEIAKAL 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 564358039 953 VGGSRVVIMDEPTAGVdpaSRRGIwELLLKY-----REGRTLILSTHHLDEAELLGDRV 1006
Cdd:PRK11288 156 ARNARVIAFDEPTSSL---SAREI-EQLFRVirelrAEGRVILYVSHRMEEIFALCDAI 210
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
803-1012 |
6.73e-16 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 83.18 E-value: 6.73e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 803 PGVSIRGLKKHFRGSPqpALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHdVQTNMAAIRPH-L 881
Cdd:PRK15439 10 PLLCARSISKQYSGVE--VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGN-PCARLTPAKAHqL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 882 GI--CPQYNVLFDMLTVEEHVWFygrlkGVSAAAIDSEQ-EHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRV 958
Cdd:PRK15439 87 GIylVPQEPLLFPNLSVKENILF-----GLPKRQASMQKmKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRI 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 564358039 959 VIMDEPTAGVDPASRRGIWELLLKYR-EGRTLILSTHHLDEAELLGDRVAMVASG 1012
Cdd:PRK15439 162 LILDEPTASLTPAETERLFSRIRELLaQGVGIVFISHKLPEIRQLADRISVMRDG 216
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
814-1012 |
6.81e-16 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 79.29 E-value: 6.81e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 814 FRGSPQpALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGH--DVQTN-----MAAIRPHLGIC-P 885
Cdd:COG4161 11 FYGSHQ-ALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHqfDFSQKpsekaIRLLRQKVGMVfQ 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 886 QYNvLFDMLTVEEH-----VWFYGRLKgvsAAAIDSEQEHLIRdVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVI 960
Cdd:COG4161 90 QYN-LWPHLTVMENlieapCKVLGLSK---EQAREKAMKLLAR-LRLTDKADRFPLHLSGGQQQRVAIARALMMEPQVLL 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 564358039 961 MDEPTAGVDPASRRGIWELLLKYRE-GRTLILSTHHLDEAELLGDRVAMVASG 1012
Cdd:COG4161 165 FDEPTAALDPEITAQVVEIIRELSQtGITQVIVTHEVEFARKVASQVVYMEKG 217
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
1845-2027 |
6.85e-16 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 80.12 E-value: 6.85e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1845 GECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSA---AHRSMGYCPQS--DAIF------DLLTGREHL 1913
Cdd:PRK13639 28 GEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSlleVRKTVGIVFQNpdDQLFaptveeDVAFGPLNL 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1914 elfarlrGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNL 1993
Cdd:PRK13639 108 -------GLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLL 180
|
170 180 190
....*....|....*....|....*....|....
gi 564358039 1994 LSVVREGRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:PRK13639 181 YDLNKEGITIIISTHDVDLVPVYADKVYVMSDGK 214
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
832-1020 |
7.16e-16 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 80.18 E-value: 7.16e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 832 GHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDV-QTNMAAIRPHLGICPQ------------YNVLFDMltvEE 898
Cdd:PRK13648 35 GQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAItDDNFEKLRKHIGIVFQnpdnqfvgsivkYDVAFGL---EN 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 899 HVWFYGRLKGVSAAAIDseqehlirDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWE 978
Cdd:PRK13648 112 HAVPYDEMHRRVSEALK--------QVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLD 183
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 564358039 979 LLLKYREGR--TLILSTHHLDEAeLLGDRVAMVASGSLCCCGSP 1020
Cdd:PRK13648 184 LVRKVKSEHniTIISITHDLSEA-MEADHVIVMNKGTVYKEGTP 226
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
1820-2027 |
8.35e-16 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 78.34 E-value: 8.35e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1820 LRDLTKVYRGQrsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAH---RSMGY 1896
Cdd:cd03262 3 IKNLHKSFGDF--HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINelrQKVGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1897 CPQSDAIFDLLTGREHLELFAR-LRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLD 1975
Cdd:cd03262 81 VFQQFNLFPHLTVLENITLAPIkVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFD 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 564358039 1976 EPTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:cd03262 161 EPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGR 212
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
805-1014 |
9.49e-16 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 79.19 E-value: 9.49e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFrGSPQpALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLF-----PPSSGSASILGHDV-QTNMAAIR 878
Cdd:PRK14247 4 IEIRDLKVSF-GQVE-VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIelypeARVSGEVYLDGQDIfKMDVIELR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 879 PHLGICPQYNVLFDMLTVEEHVWFYGRLKGV--SAAAIDS------EQEHLIRDVGliPKRDTQTRHLSGGMQRKLSVAI 950
Cdd:PRK14247 82 RRVQMVFQIPNPIPNLSIFENVALGLKLNRLvkSKKELQErvrwalEKAQLWDEVK--DRLDAPAGKLSGGQQQRLCIAR 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564358039 951 AFVGGSRVVIMDEPTAGVDPASRRGIWELLLKYREGRTLILSTHHLDEAELLGDRVAMVASGSL 1014
Cdd:PRK14247 160 ALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQI 223
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
1818-2042 |
1.01e-15 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 78.68 E-value: 1.01e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYRGQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQ-EPSAAHRSMGY 1896
Cdd:cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALaDPAWLRRQVGV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1897 CPQSDAIF-----------DLLTGREHLELFARLRGvpeaqvAQTALSGLvRLGLPSYADRPAGTYSGGNKRKLATALAL 1965
Cdd:cd03252 81 VLQENVLFnrsirdnialaDPGMSMERVIEAAKLAG------AHDFISEL-PEGYDTIVGEQGAGLSGGQRQRIAIARAL 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564358039 1966 VGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVrEGRSVVLTSHSMEECEAlCTRLAIMVNGRFRCLGSAQHLKSRFG 2042
Cdd:cd03252 154 IHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLSTVKN-ADRIIVMEKGRIVEQGSHDELLAENG 228
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
1844-2041 |
1.19e-15 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 82.79 E-value: 1.19e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1844 PGECFGLLGVNGAGKTS-----TFRMVTGdtLPSSGEAVLAGHNVaqEPSAAHRSMGYCPQSDAIFDLLTGREHLELFAR 1918
Cdd:TIGR00955 50 PGELLAVMGSSGAGKTTlmnalAFRSPKG--VKGSGSVLLNGMPI--DAKEMRAISAYVQQDDLFIPTLTVREHLMFQAH 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1919 LR---GVPEAQVAQTALSGLVRLGLPSYADRPAGT------YSGGNKRKLATALALVGDPAVVFLDEPTTGMDPsarrFL 1989
Cdd:TIGR00955 126 LRmprRVTKKEKRERVDEVLQALGLRKCANTRIGVpgrvkgLSGGERKRLAFASELLTDPPLLFCDEPTSGLDS----FM 201
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 564358039 1990 WNNLLSVVRE----GRSVVLTSH--SMEECEaLCTRLAIMVNGRFRCLGSAQHLKSRF 2041
Cdd:TIGR00955 202 AYSVVQVLKGlaqkGKTIICTIHqpSSELFE-LFDKIILMAEGRVAYLGSPDQAVPFF 258
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
821-1012 |
1.22e-15 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 79.29 E-value: 1.22e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 821 ALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSAS---ILGHDVQT------NMAAIRPHLG-ICPQYNvL 890
Cdd:PRK09984 19 ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGShieLLGRTVQRegrlarDIRKSRANTGyIFQQFN-L 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 891 FDMLTVEEHV----------------WFYGRLKGVSAAAidseqehLIRdVGLIPKRDTQTRHLSGGMQRKLSVAIAFVG 954
Cdd:PRK09984 98 VNRLSVLENVligalgstpfwrtcfsWFTREQKQRALQA-------LTR-VGMVHFAHQRVSTLSGGQQQRVAIARALMQ 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 955 GSRVVIMDEPTAGVDPASRRGIWELL--LKYREGRTLILSTHHLDEAELLGDRVAMVASG 1012
Cdd:PRK09984 170 QAKVILADEPIASLDPESARIVMDTLrdINQNDGITVVVTLHQVDYALRYCERIVALRQG 229
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
791-1014 |
1.30e-15 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 82.38 E-value: 1.30e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 791 KVLVEEPPPGLVPG---VSIRGLkkHFRGS-PQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASIL 866
Cdd:COG3845 241 EVLLRVEKAPAEPGevvLEVENL--SVRDDrGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLD 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 867 GHDV---------QTNMAAI---RPHLGICPQYNVLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIR--DVgLIPKRD 932
Cdd:COG3845 319 GEDItglsprerrRLGVAYIpedRLGRGLVPDMSVAENLILGRYRRPPFSRGGFLDRKAIRAFAEELIEefDV-RTPGPD 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 933 TQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELLLKYR-EGRTLILSTHHLDEAELLGDRVAMVAS 1011
Cdd:COG3845 398 TPARSLSGGNQQKVILARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLELRdAGAAVLLISEDLDEILALSDRIAVMYE 477
|
...
gi 564358039 1012 GSL 1014
Cdd:COG3845 478 GRI 480
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
1842-2008 |
1.38e-15 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 77.28 E-value: 1.38e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1842 IPPGECFGLLGVNGAGKTSTFRMVTGDTLPS--SGEAVLAGHnvaQEPSAAHRSMGYCPQSDAIFDLLTGREHLELFARL 1919
Cdd:cd03232 30 VKPGTLTALMGESGAGKTTLLDVLAGRKTAGviTGEILINGR---PLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1920 RGVpeaqvaqtalsglvrlglpsyadrpagtySGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVRE 1999
Cdd:cd03232 107 RGL-----------------------------SVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADS 157
|
....*....
gi 564358039 2000 GRSVVLTSH 2008
Cdd:cd03232 158 GQAILCTIH 166
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
819-1020 |
1.40e-15 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 78.90 E-value: 1.40e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 819 QPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMA-AIRPHLGICPQYNVLFDMLTVE 897
Cdd:PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSrQLARRLALLPQHHLTPEGITVR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 898 EHVwFYGRLKGVSAAAIDSEQEHLIRDVGLipkRDTQTRH--------LSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVD 969
Cdd:PRK11231 95 ELV-AYGRSPWLSLWGRLSAEDNARVNQAM---EQTRINHladrrltdLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 564358039 970 PASRRGIWELLLKYR-EGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSP 1020
Cdd:PRK11231 171 INHQVELMRLMRELNtQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTP 222
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
1818-2027 |
1.57e-15 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 78.52 E-value: 1.57e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYRGQRspAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQ-EPSAAHRSMGY 1896
Cdd:PRK11231 3 LRTENLTVGYGTKR--ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMlSSRQLARRLAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1897 CPQSDAIFDLLTGRE--------HLELFARLRGVPEAQVAQtalsGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGD 1968
Cdd:PRK11231 81 LPQHHLTPEGITVRElvaygrspWLSLWGRLSAEDNARVNQ----AMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQD 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 564358039 1969 PAVVFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:PRK11231 157 TPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGH 215
|
|
| CP_lyasePhnK |
TIGR02323 |
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P ... |
803-1012 |
1.76e-15 |
|
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. [Central intermediary metabolism, Phosphorus compounds]
Pssm-ID: 188208 [Multi-domain] Cd Length: 253 Bit Score: 78.33 E-value: 1.76e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 803 PGVSIRGLKKHFrgSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTN----MAA-- 876
Cdd:TIGR02323 2 PLLQVSGLSKSY--GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELelyqLSEae 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 877 ----IRPHLGICPQY-------------NVLFDMLTV-EEHvwfYGRLKgvsAAAIDseqehLIRDVGLIPKR-DTQTRH 937
Cdd:TIGR02323 80 rrrlMRTEWGFVHQNprdglrmrvsagaNIGERLMAIgARH---YGNIR---ATAQD-----WLEEVEIDPTRiDDLPRA 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564358039 938 LSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELL--LKYREGRTLILSTHHLDEAELLGDRVAMVASG 1012
Cdd:TIGR02323 149 FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLrgLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQG 225
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
1827-2011 |
1.80e-15 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 78.90 E-value: 1.80e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1827 YRGQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGH-----------------NVAQEPSa 1889
Cdd:PRK13638 9 FRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKpldyskrgllalrqqvaTVFQDPE- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1890 ahRSMGYCP-QSDAIFDLltgrehlelfaRLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGD 1968
Cdd:PRK13638 88 --QQIFYTDiDSDIAFSL-----------RNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQ 154
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 564358039 1969 PAVVFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSME 2011
Cdd:PRK13638 155 ARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID 197
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1817-2028 |
1.97e-15 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 81.64 E-value: 1.97e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTKvyRGQRspavdHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAHRSMG- 1895
Cdd:PRK15439 268 VLTVEDLTG--EGFR-----NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGl 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1896 -YCP---QSDAIF----------DLLTGRehLELFarLRGVPEAQVaqtaLSGLVR-LGLP-SYADRPAGTYSGGNKRKL 1959
Cdd:PRK15439 341 vYLPedrQSSGLYldaplawnvcALTHNR--RGFW--IKPARENAV----LERYRRaLNIKfNHAEQAARTLSGGNQQKV 412
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564358039 1960 ATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGRF 2028
Cdd:PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
822-1008 |
2.48e-15 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 77.55 E-value: 2.48e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 822 LRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQ----TNMAAIRPH-LGICPQYNVLFDMLTV 896
Cdd:PRK11629 25 LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSklssAAKAELRNQkLGFIYQFHHLLPDFTA 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 897 EEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGI 976
Cdd:PRK11629 105 LENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSI 184
|
170 180 190
....*....|....*....|....*....|....
gi 564358039 977 WELL--LKYREGRTLILSTHHLDEAELLGDRVAM 1008
Cdd:PRK11629 185 FQLLgeLNRLQGTAFLVVTHDLQLAKRMSRQLEM 218
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
1817-2027 |
2.54e-15 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 77.47 E-value: 2.54e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTKVYR-----GQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEaVLAGH-----NVAQ- 1885
Cdd:COG4778 4 LLEVENLSKTFTlhlqgGKRLPVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGS-ILVRHdggwvDLAQa 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1886 EPSAAH----RSMGYCPQsdaiFdL-----LTGREHLELFARLRGVPEAQVAQTALSGLVRLGLP-SYADRPAGTYSGGN 1955
Cdd:COG4778 83 SPREILalrrRTIGYVSQ----F-LrviprVSALDVVAEPLLERGVDREEARARARELLARLNLPeRLWDLPPATFSGGE 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1956 KRKLATALALVGDPAVVFLDEPTTGMDPSARRflwnnllsVVRE--------GRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:COG4778 158 QQRVNIARGFIADPPLLLLDEPTASLDAANRA--------VVVElieeakarGTAIIGIFHDEEVREAVADRVVDVTPFS 229
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
820-1020 |
2.67e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 78.49 E-value: 2.67e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 820 PALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQ--TNMAAIRPHLGICPQY-NVLFDMLTV 896
Cdd:PRK13644 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGdfSKLQGIRKLVGIVFQNpETQFVGRTV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 897 EEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGI 976
Cdd:PRK13644 96 EEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAV 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 564358039 977 WELLLK-YREGRTLILSTHHLDEAElLGDRVAMVASGSLCCCGSP 1020
Cdd:PRK13644 176 LERIKKlHEKGKTIVYITHNLEELH-DADRIIVMDRGKIVLEGEP 219
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
805-1007 |
3.51e-15 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 80.88 E-value: 3.51e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFRGspQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSAsILGHDVQtnmaairphLGIC 884
Cdd:COG0488 316 LELEGLSKSYGD--KTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTV-KLGETVK---------IGYF 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 885 PQYNVLFDM-LTVEEHVWfygrlkgvSAAAIDSEQEhlIRDV----GLIPKR-DTQTRHLSGGMQRKLSVAIAFVGGSRV 958
Cdd:COG0488 384 DQHQEELDPdKTVLDELR--------DGAPGGTEQE--VRGYlgrfLFSGDDaFKPVGVLSGGEKARLALAKLLLSPPNV 453
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 564358039 959 VIMDEPTAGVDPASRRGIWELLLKYrEGrTLILSTHhlDEaELLgDRVA 1007
Cdd:COG0488 454 LLLDEPTNHLDIETLEALEEALDDF-PG-TVLLVSH--DR-YFL-DRVA 496
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
822-995 |
5.03e-15 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 75.99 E-value: 5.03e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 822 LRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIRPHLGICPQYNVLFDMLTVEEHVW 901
Cdd:cd03231 16 FSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLR 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 902 FYGRLKGvsaaaiDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELLL 981
Cdd:cd03231 96 FWHADHS------DEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMA 169
|
170
....*....|....*
gi 564358039 982 KYRE-GRTLILSTHH 995
Cdd:cd03231 170 GHCArGGMVVLTTHQ 184
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
1820-2027 |
5.26e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 77.47 E-value: 5.26e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1820 LRDLTKVYR-GQRspAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAHRSM-GYC 1897
Cdd:PRK13647 7 VEDLHFRYKdGTK--ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKvGLV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1898 PQS--DAIFDLlTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLD 1975
Cdd:PRK13647 85 FQDpdDQVFSS-TVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLD 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 564358039 1976 EPTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:PRK13647 164 EPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGR 215
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
1814-2026 |
6.03e-15 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 77.23 E-value: 6.03e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1814 QGDVLVLRDLTKVYRGQRSpAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQepSAAHRS 1893
Cdd:PRK15056 3 QQAGIVVNDVTVTWRNGHT-ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ--ALQKNL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1894 MGYCPQSDAI---FDLLT------GRE-HLELFARlrgvPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATAL 1963
Cdd:PRK15056 80 VAYVPQSEEVdwsFPVLVedvvmmGRYgHMGWLRR----AKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLAR 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564358039 1964 ALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTrLAIMVNG 2026
Cdd:PRK15056 156 AIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCD-YTVMVKG 217
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
1817-2027 |
6.95e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 77.58 E-value: 6.95e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTKVYrGQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNV---AQEPSAAHRS 1893
Cdd:PRK13636 5 ILKVEELNYNY-SDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIdysRKGLMKLRES 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1894 MGYCPQS--DAIF------DLLTGREHLELfarlrgvPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALAL 1965
Cdd:PRK13636 84 VGMVFQDpdNQLFsasvyqDVSFGAVNLKL-------PEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564358039 1966 VGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVRE-GRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:PRK13636 157 VMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKElGLTIIIATHDIDIVPLYCDNVFVMKEGR 219
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
1820-2027 |
7.43e-15 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 76.28 E-value: 7.43e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1820 LRDLTKVYrGQrSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVaQEPSAAHRSM----G 1895
Cdd:PRK09493 4 FKNVSKHF-GP-TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKV-NDPKVDERLIrqeaG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1896 YCPQSDAIFDLLTGREHLeLFA--RLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVF 1973
Cdd:PRK09493 81 MVFQQFYLFPHLTALENV-MFGplRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLML 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 564358039 1974 LDEPTTGMDPSARrflwNNLLSVVR----EGRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:PRK09493 160 FDEPTSALDPELR----HEVLKVMQdlaeEGMTMVIVTHEIGFAEKVASRLIFIDKGR 213
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
803-1020 |
7.58e-15 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 79.12 E-value: 7.58e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 803 PGVSIRGLKKHFRGspQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQ-TNMAAIRPHL 881
Cdd:PRK09536 2 PMIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEaLSARAASRRV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 882 GICPQYNVL---FDMLTVEE-----HVWFYGRLKGVSAAAIDSEQEHLirDVGLIPKRDTQTrhLSGGMQRKLSVAIAFV 953
Cdd:PRK09536 80 ASVPQDTSLsfeFDVRQVVEmgrtpHRSRFDTWTETDRAAVERAMERT--GVAQFADRPVTS--LSGGERQRVLLARALA 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 954 GGSRVVIMDEPTAGVDpaSRRGIWELLLKYR---EGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSP 1020
Cdd:PRK09536 156 QATPVLLLDEPTASLD--INHQVRTLELVRRlvdDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPP 223
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
816-1012 |
7.80e-15 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 74.56 E-value: 7.80e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 816 GSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDV-QTNMAAIRPHLGICPQYNVLFDml 894
Cdd:cd03246 12 GAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADIsQWDPNELGDHVGYLPQDDELFS-- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 895 tveehvwfygrlkGVSAAAIdseqehlirdvglipkrdtqtrhLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRR 974
Cdd:cd03246 90 -------------GSIAENI-----------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGER 133
|
170 180 190
....*....|....*....|....*....|....*....
gi 564358039 975 GIWELLLKYRE-GRTLILSTHHLDEAELLgDRVAMVASG 1012
Cdd:cd03246 134 ALNQAIAALKAaGATRIVIAHRPETLASA-DRILVLEDG 171
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1799-2028 |
8.15e-15 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 79.69 E-value: 8.15e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1799 EDVVRERERvtKGATQGD-VLVLRDLTkvYRGQR-SPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEA 1876
Cdd:COG3845 240 REVLLRVEK--APAEPGEvVLEVENLS--VRDDRgVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSI 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1877 VLAGHNVAQEPSAAHRSMG--Y----------CPQSDAIFDLLTGREHLELFAR---LRGVPEAQVAQTALSGL-VRLGL 1940
Cdd:COG3845 316 RLDGEDITGLSPRERRRLGvaYipedrlgrglVPDMSVAENLILGRYRRPPFSRggfLDRKAIRAFAEELIEEFdVRTPG 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1941 PsyaDRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRL 2020
Cdd:COG3845 396 P---DTPARSLSGGNQQKVILARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLELRDAGAAVLLISEDLDEILALSDRI 472
|
....*...
gi 564358039 2021 AIMVNGRF 2028
Cdd:COG3845 473 AVMYEGRI 480
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
1818-2027 |
8.38e-15 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 75.95 E-value: 8.38e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYRGQrspavdHLC--LGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAhR--S 1893
Cdd:COG3840 2 LRLDDLTYRYGDF------PLRfdLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALPPAE-RpvS 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1894 MGYcpQSDAIFDLLTGREHLEL----FARLRGVPEAQVAQTAlsglVRLGLPSYADRPAGTYSGGNKRKLATALALVGDP 1969
Cdd:COG3840 75 MLF--QENNLFPHLTVAQNIGLglrpGLKLTAEQRAQVEQAL----ERVGLAGLLDRLPGQLSGGQRQRVALARCLVRKR 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564358039 1970 AVVFLDEPTTGMDPSARRflwnNLLSVVRE-----GRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:COG3840 149 PILLLDEPFSALDPALRQ----EMLDLVDElcrerGLTVLMVTHDPEDAARIADRVLLVADGR 207
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
821-1014 |
8.48e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 77.43 E-value: 8.48e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 821 ALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAA------------------------ 876
Cdd:PRK13651 22 ALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTkekekvleklviqktrfkkikkik 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 877 -IRPHLGICPQYN--VLFDMlTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLiPKRDTQTR--HLSGGMQRKLSVAIA 951
Cdd:PRK13651 102 eIRRRVGVVFQFAeyQLFEQ-TIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGL-DESYLQRSpfELSGGQKRRVALAGI 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564358039 952 FVGGSRVVIMDEPTAGVDPASRRGIWELLLK-YREGRTLILSTHHLDEAELLGDRVAMVASGSL 1014
Cdd:PRK13651 180 LAMEPDFLVFDEPTAGLDPQGVKEILEIFDNlNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKI 243
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
805-1020 |
8.85e-15 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 78.20 E-value: 8.85e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFrGSPQpALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVqTNMAAIRPHLGIC 884
Cdd:PRK10851 3 IEIANIKKSF-GRTQ-VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDV-SRLHARDRKVGFV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 885 PQYNVLFDMLTVEEHVWF----YGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVI 960
Cdd:PRK10851 80 FQHYALFRHMTVFDNIAFgltvLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564358039 961 MDEPTAGVDPASRRGIWELL------LKYregrTLILSTHHLDEAELLGDRVAMVASGSLCCCGSP 1020
Cdd:PRK10851 160 LDEPFGALDAQVRKELRRWLrqlheeLKF----TSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTP 221
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
803-1012 |
9.43e-15 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 76.85 E-value: 9.43e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 803 PGVSIRGLKKHFRGSpQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTnmaAIRPHL- 881
Cdd:PRK15056 5 AGIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLv 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 882 GICPQYN-VLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRD-----VGLIPKRDTQTRHLSGGMQRKLSVAIAFVGG 955
Cdd:PRK15056 81 AYVPQSEeVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTaalarVDMVEFRHRQIGELSGGQKKRVFLARAIAQQ 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564358039 956 SRVVIMDEPTAGVDPASRRGIWELLLKYR-EGRTLILSTHHLDEAELLGDRVAMV-----ASG 1012
Cdd:PRK15056 161 GQVILLDEPFTGVDVKTEARIISLLRELRdEGKTMLVSTHNLGSVTEFCDYTVMVkgtvlASG 223
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
803-1020 |
9.80e-15 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 76.18 E-value: 9.80e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 803 PGVSIRGLKKHFRGspQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQ-------TNMA 875
Cdd:PRK11300 4 PLLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEglpghqiARMG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 876 AIRPHlgicpQYNVLFDMLTVEE--------HV---WFYGRLKgvSAAAIDSEQEHLIR------DVGLIPKRDTQTRHL 938
Cdd:PRK11300 82 VVRTF-----QHVRLFREMTVIEnllvaqhqQLktgLFSGLLK--TPAFRRAESEALDRaatwleRVGLLEHANRQAGNL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 939 SGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELLLKYRE--GRTLILSTHHLDEAELLGDRVAMVASGSLCC 1016
Cdd:PRK11300 155 AYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNehNVTVLLIEHDMKLVMGISDRIYVVNQGTPLA 234
|
....
gi 564358039 1017 CGSP 1020
Cdd:PRK11300 235 NGTP 238
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
1822-2033 |
1.00e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 77.01 E-value: 1.00e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1822 DLTKVYRgQRSP----AVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEP---SAAHRSM 1894
Cdd:PRK13637 7 NLTHIYM-EGTPfekkALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKvklSDIRKKV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1895 GYCPQ-------SDAIF-DLLTGREHLelfarlrGVPEAQVAQTALSGLVRLGLP--SYADRPAGTYSGGNKRKLATALA 1964
Cdd:PRK13637 86 GLVFQypeyqlfEETIEkDIAFGPINL-------GLSEEEIENRVKRAMNIVGLDyeDYKDKSPFELSGGQKRRVAIAGV 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564358039 1965 LVGDPAVVFLDEPTTGMDPSARrflwNNLLSVVRE-----GRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGS 2033
Cdd:PRK13637 159 VAMEPKILILDEPTAGLDPKGR----DEILNKIKElhkeyNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGT 228
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
1840-2051 |
1.01e-14 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 78.22 E-value: 1.01e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1840 LGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHnVAQEPSAAH------RSMGYCPQSDAIFDLLTGREHL 1913
Cdd:COG4148 20 FTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGE-VLQDSARGIflpphrRRIGYVFQEARLFPHLSVRGNL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1914 eLFARLRGVPEAqvAQTALSGLVR-LGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNN 1992
Cdd:COG4148 99 -LYGRKRAPRAE--RRISFDEVVElLGIGHLLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEPLAALDLARKAEILPY 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564358039 1993 LLSVVREGR-SVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHLKSR---------FGAGHTLTLRV 2051
Cdd:COG4148 176 LERLRDELDiPILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVLSRpdllplaggEEAGSVLEATV 244
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
822-1014 |
1.03e-14 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 76.42 E-value: 1.03e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 822 LRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPS-----SGSASILGHDV---QTNMAAIRPHLGICPQYNVLFDM 893
Cdd:PRK14267 20 IKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNeearvEGEVRLFGRNIyspDVDPIEVRREVGMVFQYPNPFPH 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 894 LTVEEHVWFYGRLKGV--SAAAIDSEQEHLIRDVGL---IPKR-DTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAG 967
Cdd:PRK14267 100 LTIYDNVAIGVKLNGLvkSKKELDERVEWALKKAALwdeVKDRlNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTAN 179
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 564358039 968 VDPASRRGIWELLLKYREGRTLILSTHHLDEAELLGDRVAMVASGSL 1014
Cdd:PRK14267 180 IDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKL 226
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1834-2032 |
1.04e-14 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 79.44 E-value: 1.04e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1834 AVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQ--EPSAAHRSMGYCPQSDAIFDLLTGRE 1911
Cdd:PRK09700 20 ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKldHKLAAQLGIGIIYQELSVIDELTVLE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1912 HL----ELFARLRGVP---EAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPS 1984
Cdd:PRK09700 100 NLyigrHLTKKVCGVNiidWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNK 179
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 564358039 1985 ARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGRFRCLG 2032
Cdd:PRK09700 180 EVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSG 227
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1809-2026 |
1.07e-14 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 79.32 E-value: 1.07e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1809 TKGATQGDVLVLRDLTKVYRGqrSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQ-EP 1887
Cdd:PRK15439 3 TSDTTAPPLLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARlTP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1888 SAAHRSMGY-CPQSDAIFDLLTGREHLeLFarlrGVPEAQVAQTALSGLVR-LGLPSYADRPAGTYSGGNKRKLATALAL 1965
Cdd:PRK15439 81 AKAHQLGIYlVPQEPLLFPNLSVKENI-LF----GLPKRQASMQKMKQLLAaLGCQLDLDSSAGSLEVADRQIVEILRGL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564358039 1966 VGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNG 2026
Cdd:PRK15439 156 MRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDG 216
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1818-2027 |
1.16e-14 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 76.28 E-value: 1.16e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKV-YRGQRS--PAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPsaAHR-- 1892
Cdd:COG1101 2 LELKNLSKTfNPGTVNekRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTKLP--EYKra 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1893 ----------SMGYCPQsdaifdlLTGREHLELfARLRG--------VPEAQVA--QTALSGLvRLGLPSYADRPAGTYS 1952
Cdd:COG1101 80 kyigrvfqdpMMGTAPS-------MTIEENLAL-AYRRGkrrglrrgLTKKRRElfRELLATL-GLGLENRLDTKVGLLS 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564358039 1953 GGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVREGRsvvLTS----HSMEECEALCTRLAIMVNGR 2027
Cdd:COG1101 151 GGQRQALSLLMATLTKPKLLLLDEHTAALDPKTAALVLELTEKIVEENN---LTTlmvtHNMEQALDYGNRLIMMHEGR 226
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
1832-2039 |
1.19e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 76.56 E-value: 1.19e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1832 SPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNvAQEPS---AAHRSMGYC---PQSDAIF- 1904
Cdd:PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGID-TGDFSklqGIRKLVGIVfqnPETQFVGr 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1905 ----DLLTGREHLELfarlrgvPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTG 1980
Cdd:PRK13644 94 tveeDLAFGPENLCL-------PPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSM 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 564358039 1981 MDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEAlCTRLAIMVNGRFRCLGSAQHLKS 2039
Cdd:PRK13644 167 LDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHD-ADRIIVMDRGKIVLEGEPENVLS 224
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
825-1020 |
1.47e-14 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 77.46 E-value: 1.47e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 825 LNLDF-YEGH-ITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIR--PH---LGICPQYNVLFDMLTVE 897
Cdd:TIGR02142 14 LDADFtLPGQgVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFlpPEkrrIGYVFQEARLFPHLSVR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 898 EHVwFYGRlKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIW 977
Cdd:TIGR02142 94 GNL-RYGM-KRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEIL 171
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 564358039 978 ELLLKYRE--GRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSP 1020
Cdd:TIGR02142 172 PYLERLHAefGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPI 216
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
801-1011 |
1.89e-14 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 75.84 E-value: 1.89e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 801 LVPGVSIRGLKkhFRGSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSS-----GSASILGHDV---QT 872
Cdd:PRK14258 4 LIPAIKVNNLS--FYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESevrveGRVEFFNQNIyerRV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 873 NMAAIRPHLGIC-PQYNvLFDMlTVEEHVWFYGRLKG-VSAAAIDSEQEHLIRDVGLIP----KRDTQTRHLSGGMQRKL 946
Cdd:PRK14258 82 NLNRLRRQVSMVhPKPN-LFPM-SVYDNVAYGVKIVGwRPKLEIDDIVESALKDADLWDeikhKIHKSALDLSGGQQQRL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564358039 947 SVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELL--LKYREGRTLILSTHHLDEAELLGDRVAMVAS 1011
Cdd:PRK14258 160 CIARALAVKPKVLLMDEPCFGLDPIASMKVESLIqsLRLRSELTMVIVSHNLHQVSRLSDFTAFFKG 226
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
822-1019 |
1.91e-14 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 75.47 E-value: 1.91e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 822 LRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFP------PSSGSASILGHDV-QTNMAAIRPHLGICPQYNVLFDML 894
Cdd:PRK14246 26 LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEiydskiKVDGKVLYFGKDIfQIDAIKLRKEVGMVFQQPNPFPHL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 895 TVEEHVWFYGRLKGVSAA-AIDSEQEHLIRDVGLIP----KRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVD 969
Cdd:PRK14246 106 SIYDNIAYPLKSHGIKEKrEIKKIVEECLRKVGLWKevydRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMID 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 564358039 970 PASRRGIWELLLKYREGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGS 1019
Cdd:PRK14246 186 IVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGS 235
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
829-1020 |
1.95e-14 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 78.94 E-value: 1.95e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 829 FYEGHITAFLGHNGAGKTTTLSILSGLFPPS---SGSASILGHDVQTNMaaIRPHLGICPQYNVLFDMLTVEEHVWFYGR 905
Cdd:TIGR00955 48 AKPGELLAVMGSSGAGKTTLMNALAFRSPKGvkgSGSVLLNGMPIDAKE--MRAISAYVQQDDLFIPTLTVREHLMFQAH 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 906 LKGVSAAAIDSEQE---HLIRDVGLIPKRDT------QTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGI 976
Cdd:TIGR00955 126 LRMPRRVTKKEKRErvdEVLQALGLRKCANTrigvpgRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSV 205
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 564358039 977 WELLLKYREGRTLILSTHHLDEAEL--LGDRVAMVASGSLCCCGSP 1020
Cdd:TIGR00955 206 VQVLKGLAQKGKTIICTIHQPSSELfeLFDKIILMAEGRVAYLGSP 251
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
821-1021 |
2.15e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 76.20 E-value: 2.15e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 821 ALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAI------RPHLGIC---PQYNVLF 891
Cdd:PRK13645 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIkevkrlRKEIGLVfqfPEYQLFQ 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 892 DmlTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLipKRDTQTR---HLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGV 968
Cdd:PRK13645 106 E--TIEKDIAFGPVNLGENKQEAYKKVPELLKLVQL--PEDYVKRspfELSGGQKRRVALAGIIAMDGNTLVLDEPTGGL 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 564358039 969 DPASRRGIWELLLKYRE--GRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSPL 1021
Cdd:PRK13645 182 DPKGEEDFINLFERLNKeyKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPF 236
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
805-1006 |
2.45e-14 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 75.05 E-value: 2.45e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKhFRGSPQpALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGH--DVQTN-----MAAI 877
Cdd:PRK11124 3 IQLNGINC-FYGAHQ-ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNhfDFSKTpsdkaIREL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 878 RPHLGIC-PQYNvLFDMLTVEEH-VWFYGRLKGVS-AAAIDSEQEHLIRdVGLIPKRDTQTRHLSGGMQRKLSVAIAFVG 954
Cdd:PRK11124 81 RRNVGMVfQQYN-LWPHLTVQQNlIEAPCRVLGLSkDQALARAEKLLER-LRLKPYADRFPLHLSGGQQQRVAIARALMM 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 564358039 955 GSRVVIMDEPTAGVDPASRRGIWELLLKYRE-GRTLILSTHHLDEAELLGDRV 1006
Cdd:PRK11124 159 EPQVLLFDEPTAALDPEITAQIVSIIRELAEtGITQVIVTHEVEVARKTASRV 211
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
1795-2027 |
2.89e-14 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 78.03 E-value: 2.89e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1795 GEEDEDVVRERERvtkgaTQGDV-LVLRDLTKvyRGQRSPAvdhlCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSS 1873
Cdd:PRK11288 239 GREIGDIYGYRPR-----PLGEVrLRLDGLKG--PGLREPI----SFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTA 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1874 GEAVLAGHNVA-QEPSAAHRS-MGYCPQ---SDAIFDLLTGREHLELFAR---------LRGVPEAQVAQTALSGLvRLG 1939
Cdd:PRK11288 308 GQVYLDGKPIDiRSPRDAIRAgIMLCPEdrkAEGIIPVHSVADNINISARrhhlragclINNRWEAENADRFIRSL-NIK 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1940 LPSyADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTR 2019
Cdd:PRK11288 387 TPS-REQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADR 465
|
....*...
gi 564358039 2020 LAIMVNGR 2027
Cdd:PRK11288 466 IVVMREGR 473
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
795-1007 |
3.21e-14 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 74.69 E-value: 3.21e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 795 EEPPPGLVPGVSIRGLKKHFRGspQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGL--FPPS---SGSASILGHD 869
Cdd:COG1117 2 TAPASTLEPKIEVRNLNVYYGD--KQALKDINLDIPENKVTALIGPSGCGKSTLLRCLNRMndLIPGarvEGEILLDGED 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 870 V---QTNMAAIRPHLGICPQYNVLFDMlTVEEHVwFYG-RLKGV-SAAAIDSEQEHLIRDVGLIP----KRDTQTRHLSG 940
Cdd:COG1117 80 IydpDVDVVELRRRVGMVFQKPNPFPK-SIYDNV-AYGlRLHGIkSKSELDEIVEESLRKAALWDevkdRLKKSALGLSG 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564358039 941 GMQRKLSVAiafvggsR-------VVIMDEPTAGVDPASRRGIWELLLKYREGRTLILSTHHLDEAELLGDRVA 1007
Cdd:COG1117 158 GQQQRLCIA-------RalavepeVLLMDEPTSALDPISTAKIEELILELKKDYTIVIVTHNMQQAARVSDYTA 224
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
821-1027 |
3.25e-14 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 76.04 E-value: 3.25e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 821 ALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASI----LGHDVQT-------------NMAAIRPHLGI 883
Cdd:PRK13631 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVgdiyIGDKKNNhelitnpyskkikNFKELRRRVSM 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 884 C---PQYNVLFDmlTVEEHVWFYGRLKGVSAaaIDSEQE---HLIRdVGL-IPKRDTQTRHLSGGMQRKLSVAIAFVGGS 956
Cdd:PRK13631 121 VfqfPEYQLFKD--TIEKDIMFGPVALGVKK--SEAKKLakfYLNK-MGLdDSYLERSPFGLSGGQKRRVAIAGILAIQP 195
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564358039 957 RVVIMDEPTAGVDPASRRGIWELLLKYR-EGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSP--LFLRRHL 1027
Cdd:PRK13631 196 EILIFDEPTAGLDPKGEHEMMQLILDAKaNNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPyeIFTDQHI 269
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1817-2027 |
4.91e-14 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 77.37 E-value: 4.91e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTKVYRGQRspAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVA-QEPSAAHRS-M 1894
Cdd:COG3845 5 ALELRGITKRFGGVV--ANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKPVRiRSPRDAIALgI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1895 GYCPQSDAIFDLLT-------GREHLELFARLRGVPEAQVAqtALSGlvRLGLPSYADRPAGTYSGGNKRKLATALALVG 1967
Cdd:COG3845 83 GMVHQHFMLVPNLTvaenivlGLEPTKGGRLDRKAARARIR--ELSE--RYGLDVDPDAKVEDLSVGEQQRVEILKALYR 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1968 DPAVVFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:COG3845 159 GARILILDEPTAVLTPQEADELFEILRRLAAEGKSIIFITHKLREVMAIADRVTVLRRGK 218
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
825-1026 |
5.50e-14 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 75.91 E-value: 5.50e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 825 LNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIRphlGICP--QYNVLFDMLTVEEHVWF 902
Cdd:PRK11432 25 LNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQR---DICMvfQSYALFPHMSLGENVGY 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 903 YGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELL-- 980
Cdd:PRK11432 102 GLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIre 181
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 564358039 981 LKYREGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSPLFLRRH 1026
Cdd:PRK11432 182 LQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
1828-2039 |
8.42e-14 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 74.03 E-value: 8.42e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1828 RGQRsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVA----QEPSAAHRSMGYCPQSDAI 1903
Cdd:PRK11831 17 RGNR-CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPamsrSRLYTVRKRMSMLFQSGAL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1904 FDLLTG--------REHLELfarlrgvPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLD 1975
Cdd:PRK11831 96 FTDMNVfdnvayplREHTQL-------PAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFD 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564358039 1976 EPTTGMDPsarrFLWNNLLSVVRE-----GRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHLKS 2039
Cdd:PRK11831 169 EPFVGQDP----ITMGVLVKLISElnsalGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
1817-2056 |
1.07e-13 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 73.69 E-value: 1.07e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTKVYRG-------QRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSA 1889
Cdd:TIGR02769 2 LLEVRDVTHTYRTgglfgakQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1890 AHRSM-------------GYCPQSDAIFDLltgREHLELFARLRgvpEAQVAQTALSGLVRLGLPS-YADRPAGTYSGGN 1955
Cdd:TIGR02769 82 QRRAFrrdvqlvfqdspsAVNPRMTVRQII---GEPLRHLTSLD---ESEQKARIAELLDMVGLRSeDADKLPRQLSGGQ 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1956 KRKLATALALVGDPAVVFLDEPTTGMDpsarRFLWNNLLSVVRE-----GRSVVLTSHSMEECEALCTRLAIMVNGRF-R 2029
Cdd:TIGR02769 156 LQRINIARALAVKPKLIVLDEAVSNLD----MVLQAVILELLRKlqqafGTAYLFITHDLRLVQSFCQRVAVMDKGQIvE 231
|
250 260
....*....|....*....|....*..
gi 564358039 2030 CLGSAQHLKSRFGAGHTLTLRVPPDQP 2056
Cdd:TIGR02769 232 ECDVAQLLSFKHPAGRNLQSAVLPEHP 258
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
836-1012 |
1.60e-13 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 72.31 E-value: 1.60e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 836 AFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIRPhLGICPQYNVLFDMLTVEEHVWFyGRLKGVSaaaID 915
Cdd:PRK10771 29 AILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRP-VSMLFQENNLFSHLTVAQNIGL-GLNPGLK---LN 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 916 SEQEHLIRD----VGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELLLKYREGR--TL 989
Cdd:PRK10771 104 AAQREKLHAiarqMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERqlTL 183
|
170 180
....*....|....*....|...
gi 564358039 990 ILSTHHLDEAELLGDRVAMVASG 1012
Cdd:PRK10771 184 LMVSHSLEDAARIAPRSLVVADG 206
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
1818-2037 |
1.62e-13 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 72.48 E-value: 1.62e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYRGQRspaVDH-LCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGE------AVLAGHNVAQEPS-- 1888
Cdd:PRK11264 4 IEVKNLVKKFHGQT---VLHgIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTirvgdiTIDTARSLSQQKGli 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1889 -AAHRSMGYCPQSdaiFDLLTGREHLELFAR----LRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATAL 1963
Cdd:PRK11264 81 rQLRQHVGFVFQN---FNLFPHRTVLENIIEgpviVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIAR 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564358039 1964 ALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHL 2037
Cdd:PRK11264 158 ALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKAL 231
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
821-1007 |
1.62e-13 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 72.89 E-value: 1.62e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 821 ALRGLNLDFYEGHITAFLGHNGAGKTTTLSI---LSGLFPPSSGSASILGH-----DVQTNMAAIRPHLGICPQYNVLFD 892
Cdd:PRK14243 25 AVKNVWLDIPKNQITAFIGPSGCGKSTILRCfnrLNDLIPGFRVEGKVTFHgknlyAPDVDPVEVRRRIGMVFQKPNPFP 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 893 MlTVEEHVWFYGRLKG------------VSAAAIDSEQEHLIRDVGLipkrdtqtrHLSGGMQRKLSVAIAFVGGSRVVI 960
Cdd:PRK14243 105 K-SIYDNIAYGARINGykgdmdelversLRQAALWDEVKDKLKQSGL---------SLSGGQQQRLCIARAIAVQPEVIL 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 564358039 961 MDEPTAGVDPASRRGIWELLLKYREGRTLILSTHHLDEAELLGDRVA 1007
Cdd:PRK14243 175 MDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTA 221
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
1817-1982 |
1.71e-13 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 72.16 E-value: 1.71e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTKVYR-GQRSPAVDH-LCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAA---- 1890
Cdd:PRK11629 5 LLQCDNLCKRYQeGSVQTDVLHnVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAkael 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1891 -HRSMGYCPQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDP 1969
Cdd:PRK11629 85 rNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNP 164
|
170
....*....|...
gi 564358039 1970 AVVFLDEPTTGMD 1982
Cdd:PRK11629 165 RLVLADEPTGNLD 177
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1834-2027 |
1.95e-13 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 72.22 E-value: 1.95e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1834 AVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSA--AHRSMGYCPQSDAIFDLLTGRE 1911
Cdd:PRK11614 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAkiMREAVAIVPEGRRVFSRMTVEE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1912 HLEL---FArlrgvpEAQVAQTALSGLVRLgLPSYADRP---AGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSA 1985
Cdd:PRK11614 100 NLAMggfFA------ERDQFQERIKWVYEL-FPRLHERRiqrAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPII 172
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 564358039 1986 RRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:PRK11614 173 IQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGH 214
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
1831-2041 |
2.17e-13 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 73.96 E-value: 2.17e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1831 RSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEpSAAHRSMGYCPQSDAIFDLLTGR 1910
Cdd:PRK10851 14 RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRL-HARDRKVGFVFQHYALFRHMTVF 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1911 EH----LELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSAR 1986
Cdd:PRK10851 93 DNiafgLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVR 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564358039 1987 RFL--WNNLLSVVREGRSVVLTsHSMEECEALCTRLAIMVNGRFRCLGSAQHL----KSRF 2041
Cdd:PRK10851 173 KELrrWLRQLHEELKFTSVFVT-HDQEEAMEVADRVVVMSQGNIEQAGTPDQVwrepATRF 232
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
1830-2052 |
2.59e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 72.46 E-value: 2.59e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1830 QRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHN---------------VAQEPSaaHRSM 1894
Cdd:PRK13650 18 QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLlteenvwdirhkigmVFQNPD--NQFV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1895 GYCPQSDAIFDLLT-GREHLELFARlrgVPEAqvaqtalsgLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVF 1973
Cdd:PRK13650 96 GATVEDDVAFGLENkGIPHEEMKER---VNEA---------LELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIII 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1974 LDEPTTGMDPSARRFLWNNLLSVVRE-GRSVVLTSHSMEECeALCTRLAIMVNGRFRCLGSAQHLKSRFGAGHTLTLRVP 2052
Cdd:PRK13650 164 LDEATSMLDPEGRLELIKTIKGIRDDyQMTVISITHDLDEV-ALSDRVLVMKNGQVESTSTPRELFSRGNDLLQLGLDIP 242
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
812-1020 |
2.61e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 72.43 E-value: 2.61e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 812 KHFRGSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQT-NMAAIRPHLGICPQY-NV 889
Cdd:PRK13642 13 KYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAeNVWNLRRKIGMVFQNpDN 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 890 LFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVD 969
Cdd:PRK13642 93 QFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLD 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 564358039 970 PASRRGIWELL--LKYREGRTLILSTHHLDEAElLGDRVAMVASGSLCCCGSP 1020
Cdd:PRK13642 173 PTGRQEIMRVIheIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIKEAAP 224
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
823-995 |
4.49e-13 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 70.22 E-value: 4.49e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 823 RGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGhdvqTNMAAIRPHLgicpQYNVLF--------DML 894
Cdd:PRK13538 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQG----EPIRRQRDEY----HQDLLYlghqpgikTEL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 895 TVEEHVWFYGRLKG-VSAAAIdseqEHLIRDVGLIPKRDTQTRHLSGGMQRKlsVAIA--FVGGSRVVIMDEPTAGVDPA 971
Cdd:PRK13538 90 TALENLRFYQRLHGpGDDEAL----WEALAQVGLAGFEDVPVRQLSAGQQRR--VALArlWLTRAPLWILDEPFTAIDKQ 163
|
170 180
....*....|....*....|....*
gi 564358039 972 SRRGIWELLLKY-REGRTLILSTHH 995
Cdd:PRK13538 164 GVARLEALLAQHaEQGGMVILTTHQ 188
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
1814-2047 |
4.93e-13 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 71.58 E-value: 4.93e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1814 QGDVLVLRDLTKVYRGQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHN----------- 1882
Cdd:PRK13635 2 KEEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVlseetvwdvrr 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1883 ----VAQEPSaaHRSMGYCPQSDAIFDLltgrEHlelfarlRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRK 1958
Cdd:PRK13635 82 qvgmVFQNPD--NQFVGATVQDDVAFGL----EN-------IGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1959 LATALALVGDPAVVFLDEPTTGMDPSARRflwnNLLSVVR----EGRSVVLT-SHSMEECeALCTRLAIMVNGRFRCLGS 2033
Cdd:PRK13635 149 VAIAGVLALQPDIIILDEATSMLDPRGRR----EVLETVRqlkeQKGITVLSiTHDLDEA-AQADRVIVMNKGEILEEGT 223
|
250
....*....|....
gi 564358039 2034 AQHLksrFGAGHTL 2047
Cdd:PRK13635 224 PEEI---FKSGHML 234
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
1829-2027 |
5.78e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 71.66 E-value: 5.78e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1829 GQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSA--AHRSMGYCPQSD----- 1901
Cdd:PRK13633 20 STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLwdIRNKAGMVFQNPdnqiv 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1902 -AIF--DLLTGREHLelfarlrGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPT 1978
Cdd:PRK13633 100 aTIVeeDVAFGPENL-------GIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPT 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 564358039 1979 TGMDPSARRFLWNNLLSVVRE-GRSVVLTSHSMEECeALCTRLAIMVNGR 2027
Cdd:PRK13633 173 AMLDPSGRREVVNTIKELNKKyGITIILITHYMEEA-VEADRIIVMDSGK 221
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
819-1033 |
5.80e-13 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 74.37 E-value: 5.80e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 819 QPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHD-VQTNMAAIRPHLGICPQYNVLFDMlTVE 897
Cdd:TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPlVQYDHHYLHRQVALVGQEPVLFSG-SVR 572
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 898 EHVWF---YGRLKGVSAAAIDSEQEHLIrdVGLIPKRDTQT----RHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDP 970
Cdd:TIGR00958 573 ENIAYgltDTPDEEIMAAAKAANAHDFI--MEFPNGYDTEVgekgSQLSGGQKQRIAIARALVRKPRVLILDEATSALDA 650
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564358039 971 ASRRGIWEllLKYREGRTLILSTHHLDEAElLGDRVAMVASGSLCCCGSPLFLRRHLGCGYYL 1033
Cdd:TIGR00958 651 ECEQLLQE--SRSRASRTVLLIAHRLSTVE-RADQILVLKKGSVVEMGTHKQLMEDQGCYKHL 710
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
813-1020 |
6.07e-13 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 71.15 E-value: 6.07e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 813 HFRGSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDV--------------QTNMAAIR 878
Cdd:PRK10619 12 HKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTInlvrdkdgqlkvadKNQLRLLR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 879 PHLGICPQYNVLFDMLTVEEHVWFYG-RLKGVSAAAIDSEQEHLIRDVGLIPK-RDTQTRHLSGGMQRKLSVAIAFVGGS 956
Cdd:PRK10619 92 TRLTMVFQHFNLWSHMTVLENVMEAPiQVLGLSKQEARERAVKYLAKVGIDERaQGKYPVHLSGGQQQRVSIARALAMEP 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564358039 957 RVVIMDEPTAGVDPASRRGIWELLLKY-REGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSP 1020
Cdd:PRK10619 172 EVLLFDEPTSALDPELVGEVLRIMQQLaEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAP 236
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
791-1012 |
6.15e-13 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 75.01 E-value: 6.15e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 791 KVLVEEPP--PGlVPGVSIR-GLKKHFRGSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSsgsasilg 867
Cdd:PLN03232 600 RILAQNPPlqPG-APAISIKnGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHA-------- 670
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 868 hdvQTNMAAIRPHLGICPQYNVLFDMlTVEEHVWF--------YGRLKGVSAaaidseqehLIRDVGLIPKRD-----TQ 934
Cdd:PLN03232 671 ---ETSSVVIRGSVAYVPQVSWIFNA-TVRENILFgsdfeserYWRAIDVTA---------LQHDLDLLPGRDlteigER 737
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564358039 935 TRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELLLKYR-EGRTLILSTHHLDEAELLgDRVAMVASG 1012
Cdd:PLN03232 738 GVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDElKGKTRVLVTNQLHFLPLM-DRIILVSEG 815
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
817-1013 |
6.20e-13 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 69.81 E-value: 6.20e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 817 SPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGhdvqtnmaairpHLGICPQY--------- 887
Cdd:cd03250 16 ETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG------------SIAYVSQEpwiqngtir 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 888 -NVLFDMltVEEHVWFygrLKGVSAAAidseqehLIRDVGLIPKRDtQTR------HLSGGMQRKLSVAIAFVGGSRVVI 960
Cdd:cd03250 84 eNILFGK--PFDEERY---EKVIKACA-------LEPDLEILPDGD-LTEigekgiNLSGGQKQRISLARAVYSDADIYL 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 564358039 961 MDEPTAGVDPASRRGIWELLL--KYREGRTLILSTHHLdeaELLG--DRVAMVASGS 1013
Cdd:cd03250 151 LDDPLSAVDAHVGRHIFENCIlgLLLNNKTRILVTHQL---QLLPhaDQIVVLDNGR 204
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
803-965 |
8.07e-13 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 73.50 E-value: 8.07e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 803 PGVSIRGLKKHFRGSPqpALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTN------MAA 876
Cdd:PRK10762 3 ALLQLKGIDKAFPGVK--ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNgpkssqEAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 877 IrphlGICPQYNVLFDMLTVEEHVwFYGRLKGVSAAAID-----SEQEHLIRDVGLipKRDTQTR--HLSGGMQRKLSVA 949
Cdd:PRK10762 81 I----GIIHQELNLIPQLTIAENI-FLGREFVNRFGRIDwkkmyAEADKLLARLNL--RFSSDKLvgELSIGEQQMVEIA 153
|
170
....*....|....*.
gi 564358039 950 IAFVGGSRVVIMDEPT 965
Cdd:PRK10762 154 KVLSFESKVIIMDEPT 169
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
807-1013 |
9.97e-13 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 69.77 E-value: 9.97e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 807 IRGLKKHF----RGSPQ-PALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIRPH- 880
Cdd:COG4778 7 VENLSKTFtlhlQGGKRlPVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVRHDGGWVDLAQASPRe 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 881 --------LGICPQYnvlfdmLTV------EEHVWFYGRLKGVSAAAIDSEQEHLIRDVGlIPKR--DTQTRHLSGGMQR 944
Cdd:COG4778 87 ilalrrrtIGYVSQF------LRViprvsaLDVVAEPLLERGVDREEARARARELLARLN-LPERlwDLPPATFSGGEQQ 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 945 KLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELLLKY-REGRTLILSTHHLDEAELLGDRVAMVASGS 1013
Cdd:COG4778 160 RVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAkARGTAIIGIFHDEEVREAVADRVVDVTPFS 229
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
1797-2027 |
1.60e-12 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 72.83 E-value: 1.60e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1797 EDEDVVRERERVTkgatqGDVLVlRDLTKVYRGQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEA 1876
Cdd:TIGR02203 316 EKDTGTRAIERAR-----GDVEF-RNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQI 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1877 VLAGHNVAQEPSAAHRS-MGYCPQSDAIFDLlTGREHLElFARLRGVPEAQV---AQTALSGLVRLGLPSYADRPAGT-- 1950
Cdd:TIGR02203 390 LLDGHDLADYTLASLRRqVALVSQDVVLFND-TIANNIA-YGRTEQADRAEIeraLAAAYAQDFVDKLPLGLDTPIGEng 467
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564358039 1951 --YSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRfLWNNLLSVVREGRSVVLTSHSMEECEAlCTRLAIMVNGR 2027
Cdd:TIGR02203 468 vlLSGGQRQRLAIARALLKDAPILILDEATSALDNESER-LVQAALERLMQGRTTLVIAHRLSTIEK-ADRIVVMDDGR 544
|
|
| nickel_nikD |
TIGR02770 |
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a ... |
824-1020 |
1.78e-12 |
|
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131817 [Multi-domain] Cd Length: 230 Bit Score: 68.93 E-value: 1.78e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 824 GLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPP----SSGSASILGHDVqtNMAAIRP-HLGICPQ-----YNVLFDM 893
Cdd:TIGR02770 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPgltqTSGEILLDGRPL--LPLSIRGrHIATIMQnprtaFNPLFTM 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 894 LT-VEEHVWFYGRLKGVSAAAIdseqEHLIRDVGL-IPKR--DTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVD 969
Cdd:TIGR02770 82 GNhAIETLRSLGKLSKQARALI----LEALEAVGLpDPEEvlKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLD 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 564358039 970 PASRRGIWELLLKYRE--GRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSP 1020
Cdd:TIGR02770 158 VVNQARVLKLLRELRQlfGTGILLITHDLGVVARIADEVAVMDDGRIVERGTV 210
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
805-996 |
2.13e-12 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 72.44 E-value: 2.13e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFRGSpQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQT-NMAAIRPHLGI 883
Cdd:PRK10790 341 IDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSlSHSVLRQGVAM 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 884 CPQYNV-----LFDMLTV-----EEHVWfyGRLKGVSAAAidseqehLIRDV--GLIPKRDTQTRHLSGGMQRKLSVAIA 951
Cdd:PRK10790 420 VQQDPVvladtFLANVTLgrdisEEQVW--QALETVQLAE-------LARSLpdGLYTPLGEQGNNLSVGQKQLLALARV 490
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 564358039 952 FVGGSRVVIMDEPTAGVDPASRRGIWELLLKYREGRTLILSTHHL 996
Cdd:PRK10790 491 LVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRL 535
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
822-1020 |
2.22e-12 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 67.94 E-value: 2.22e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 822 LRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGlFP---PSSGSASILGHDVqTNMAAI-RPHLGI--CPQYNVLFDMLT 895
Cdd:cd03217 16 LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG-HPkyeVTEGEILFKGEDI-TDLPPEeRARLGIflAFQYPPEIPGVK 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 896 VEEhvwfygrlkgvsaaaidseqehLIRDVGLipkrdtqtrHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRG 975
Cdd:cd03217 94 NAD----------------------FLRYVNE---------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRL 142
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 564358039 976 IWELLLKYR-EGRTLILSTHHLDEAELL-GDRVAMVASGSLCCCGSP 1020
Cdd:cd03217 143 VAEVINKLReEGKSVLIITHYQRLLDYIkPDRVHVLYDGRIVKSGDK 189
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
804-1023 |
2.24e-12 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 71.21 E-value: 2.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 804 GVSIRGLKKHFRGSPqpALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGhdvqTNMAAIRPH--- 880
Cdd:PRK11000 3 SVTLRNVTKAYGDVV--ISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGE----KRMNDVPPAerg 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 881 LGICPQYNVLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGmQRKlSVAIA--FVGGSRV 958
Cdd:PRK11000 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGG-QRQ-RVAIGrtLVAEPSV 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564358039 959 VIMDEPTAGVDPASR---RgIWELLLKYREGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSPLFL 1023
Cdd:PRK11000 155 FLLDEPLSNLDAALRvqmR-IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
814-1025 |
2.49e-12 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 69.43 E-value: 2.49e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 814 FRGSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQT-NMAAIRPHLGICPQYNVLFD 892
Cdd:PRK10575 19 FRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESwSSKAFARKVAYLPQQLPAAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 893 MLTVEEHV------WfYGRLKGVSAAaiDSEQ-EHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPT 965
Cdd:PRK10575 99 GMTVRELVaigrypW-HGALGRFGAA--DREKvEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPT 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564358039 966 AGVDPASRRGIWELL--LKYREGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSPLFLRR 1025
Cdd:PRK10575 176 SALDIAHQVDVLALVhrLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
1835-2027 |
3.49e-12 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 69.47 E-value: 3.49e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1835 VDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPS-----AAHRSMGYCPQ-SDAIFDLLT 1908
Cdd:PRK13641 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGnknlkKLRKKVSLVFQfPEAQLFENT 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1909 GREHLELFARLRGVPEAQVAQTALSGLVRLGLP-SYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARR 1987
Cdd:PRK13641 103 VLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSeDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRK 182
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 564358039 1988 FLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:PRK13641 183 EMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGK 222
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
1830-2008 |
3.98e-12 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 67.28 E-value: 3.98e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1830 QRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAHRSMGYCPQSDAIFDLLTG 1909
Cdd:PRK13540 12 HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1910 REHLeLFarlrgvpEAQVAQTAL--SGLVRL-GLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSAR 1986
Cdd:PRK13540 92 RENC-LY-------DIHFSPGAVgiTELCRLfSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSL 163
|
170 180
....*....|....*....|..
gi 564358039 1987 RFLWNNLLSVVREGRSVVLTSH 2008
Cdd:PRK13540 164 LTIITKIQEHRAKGGAVLLTSH 185
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
820-1014 |
4.96e-12 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 67.88 E-value: 4.96e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 820 PALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDV-QTNMAAIRPHLGICPQYNVLFDMlTVEE 898
Cdd:cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPIsQYEHKYLHSKVSLVGQEPVLFAR-SLQD 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 899 HVwFYG----RLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTR--HLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPAS 972
Cdd:cd03248 107 NI-AYGlqscSFECVKEAAQKAHAHSFISELASGYDTEVGEKgsQLSGGQKQRVAIARALIRNPQVLILDEATSALDAES 185
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 564358039 973 RRGIWELLLKYREGRTLILSTHHLDEAElLGDRVAMVASGSL 1014
Cdd:cd03248 186 EQQVQQALYDWPERRTVLVIAHRLSTVE-RADQILVLDGGRI 226
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
1818-2008 |
5.37e-12 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 67.64 E-value: 5.37e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYRGQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQ-EPSAAHRSMGY 1896
Cdd:cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDyTLASLRRQIGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1897 CPQSDAIFDLlTGREHLeLFARlRGVPEAQV---AQTALSGLVRLGLPSYADRPAG----TYSGGNKRKLATALALVGDP 1969
Cdd:cd03251 81 VSQDVFLFND-TVAENI-AYGR-PGATREEVeeaARAANAHEFIMELPEGYDTVIGergvKLSGGQRQRIAIARALLKDP 157
|
170 180 190
....*....|....*....|....*....|....*....
gi 564358039 1970 AVVFLDEPTTGMDPSARRfLWNNLLSVVREGRSVVLTSH 2008
Cdd:cd03251 158 PILILDEATSALDTESER-LVQAALERLMKNRTTFVIAH 195
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
1810-2008 |
5.70e-12 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 71.80 E-value: 5.70e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1810 KGATQGDVLVLRDLTKVYRgqrspavdhlclgipPGECFGLLGVNGAGKTSTFRMVTGDTLPS--SGEAVLAGHNVAQEP 1887
Cdd:PLN03140 886 QGVTEDRLQLLREVTGAFR---------------PGVLTALMGVSGAGKTTLMDVLAGRKTGGyiEGDIRISGFPKKQET 950
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1888 SAahRSMGYCPQSDAIFDLLTGREHLELFARLRGVPEA----------QVAQtalsgLVRL--------GLPSYADrpag 1949
Cdd:PLN03140 951 FA--RISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVskeekmmfvdEVME-----LVELdnlkdaivGLPGVTG---- 1019
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 564358039 1950 tYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVLTSH 2008
Cdd:PLN03140 1020 -LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1077
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
1921-2037 |
6.94e-12 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 68.51 E-value: 6.94e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1921 GVPEAQVAQTALSGLVRLGLP-SYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVRE 1999
Cdd:PRK13634 115 GVSEEDAKQKAREMIELVGLPeELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKE 194
|
90 100 110
....*....|....*....|....*....|....*....
gi 564358039 2000 -GRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHL 2037
Cdd:PRK13634 195 kGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREI 233
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
825-1020 |
7.60e-12 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 68.09 E-value: 7.60e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 825 LNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAA-IRPHLGICPQYNVLFDMLTVEE----- 898
Cdd:PRK10253 26 LTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKeVARRIGLLAQNATTPGDITVQElvarg 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 899 ---HVWFYGRLKGVSAAAIDSEqehlIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRG 975
Cdd:PRK10253 106 rypHQPLFTRWRKEDEEAVTKA----MQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQID 181
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 564358039 976 IWELL--LKYREGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSP 1020
Cdd:PRK10253 182 LLELLseLNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAP 228
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
805-1024 |
9.03e-12 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 67.87 E-value: 9.03e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLkkHFRGSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDV----QTNMAAIRPH 880
Cdd:PRK11831 8 VDMRGV--SFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIpamsRSRLYTVRKR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 881 LGICPQYNVLFDMLTVEEHVWFYGR-LKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVV 959
Cdd:PRK11831 86 MSMLFQSGALFTDMNVFDNVAYPLReHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLI 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564358039 960 IMDEPTAGVDPASRRGIWELL--LKYREGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSPLFLR 1024
Cdd:PRK11831 166 MFDEPFVGQDPITMGVLVKLIseLNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232
|
|
| ABC2_membrane_3 |
pfam12698 |
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter ... |
548-748 |
1.14e-11 |
|
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family pfam01061.
Pssm-ID: 463674 [Multi-domain] Cd Length: 345 Bit Score: 68.57 E-value: 1.14e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 548 LPLFLTLAWIYSVALTVKAVVREKETRLRETMRAMGLSRAVLWLGWFLSCLGPFLVSaALLVLVLKLGNILPYSHPVVVF 627
Cdd:pfam12698 164 VGLILMIIILIGAAIIAVSIVEEKESRIKERLLVSGVSPLQYWLGKILGDFLVGLLQ-LLIILLLLFGIGIPFGNLGLLL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 628 LFLAAFAVATVAQSFLLSAFFSR---ANLAAACGGLAYFALYLPYVLcvawRERLPLGGLLAVSLLSPVAFGFGCESLal 704
Cdd:pfam12698 243 LLFLLYGLAYIALGYLLGSLFKNsedAQSIIGIVILLLSGFFGGLFP----LEDPPSFLQWIFSIIPFFSPIDGLLRL-- 316
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 564358039 705 leeqgdgaqwhNLGTGPAEdvfsLAQVSAFLLLDAVIYGLALWY 748
Cdd:pfam12698 317 -----------IYGDSLWE----IAPSLIILLLFAVVLLLLALL 345
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
1835-2029 |
1.19e-11 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 69.47 E-value: 1.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1835 VDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGdTLPS--SGEAVLAGHNVAQEPSAAHRSMGYC--PQS---DAIF-DL 1906
Cdd:TIGR02633 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFG-AYPGkfEGNVFINGKPVDIRNPAQAIRAGIAmvPEDrkrHGIVpIL 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1907 LTGRE----HLELFARLRGVPEAQVAQTALSGLVRLGLPSYA-DRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGM 1981
Cdd:TIGR02633 355 GVGKNitlsVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASpFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGV 434
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 564358039 1982 DPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGRFR 2029
Cdd:TIGR02633 435 DVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLK 482
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
825-1020 |
1.30e-11 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 66.88 E-value: 1.30e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 825 LNLDFYEGHITAFLGHNGAGKTTTLSILSGLFpPSSGSASILGHDVQT----NMAAIRPHLgiCPQYNVLFDMltveeHV 900
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAwsaaELARHRAYL--SQQQTPPFAM-----PV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 901 WFYGRL---KGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVG-------GSRVVIMDEPTAGVDP 970
Cdd:PRK03695 87 FQYLTLhqpDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQvwpdinpAGQLLLLDEPMNSLDV 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 564358039 971 ASRRGIWELLLKY-REGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSP 1020
Cdd:PRK03695 167 AQQAALDRLLSELcQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRR 217
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
1818-2039 |
1.48e-11 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 66.53 E-value: 1.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYrgqrspavDHL----CLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHN-VAQEPSAAHR 1892
Cdd:PRK10771 2 LKLTDITWLY--------HHLpmrfDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDhTTTPPSRRPV 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1893 SMGYcpQSDAIFDLLTGREHLEL----FARLRGVPEAQVAQTAlsglVRLGLPSYADRPAGTYSGGNKRKLATALALVGD 1968
Cdd:PRK10771 74 SMLF--QENNLFSHLTVAQNIGLglnpGLKLNAAQREKLHAIA----RQMGIEDLLARLPGQLSGGQRQRVALARCLVRE 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564358039 1969 PAVVFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVL-TSHSMEECEALCTRLAIMVNGRFRCLGSAQHLKS 2039
Cdd:PRK10771 148 QPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLmVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
1793-2008 |
1.70e-11 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 70.14 E-value: 1.70e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1793 PLGEEDEDVvrERERVTKGATQGDVLVLRDLT---KVYRGQRSpAVDHLCLGIPPGECFGLLGVNGAGKTSTF-----RM 1864
Cdd:TIGR00956 737 DLTDESDDV--NDEKDMEKESGEDIFHWRNLTyevKIKKEKRV-ILNNVDGWVKPGTLTALMGASGAGKTTLLnvlaeRV 813
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1865 VTGdtLPSSGEAVLAGHNVaqePSAAHRSMGYCPQSDAIFDLLTGREHLELFARLR---GVPEAQVAQTALSGLVRLGLP 1941
Cdd:TIGR00956 814 TTG--VITGGDRLVNGRPL---DSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRqpkSVSKSEKMEYVEEVIKLLEME 888
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564358039 1942 SYADRPAGTYSGG----NKRKLATALALVGDPA-VVFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVLTSH 2008
Cdd:TIGR00956 889 SYADAVVGVPGEGlnveQRKRLTIGVELVAKPKlLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIH 960
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
1827-2025 |
1.84e-11 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 66.09 E-value: 1.84e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1827 YRGQRsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAHRSM-GYCPQSDAIFD 1905
Cdd:cd03254 12 YDEKK-PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMiGVVLQDTFLFS 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1906 lLTGREHLELF---ARLRGVPEAQVAQTALSGLVRL--GLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTG 1980
Cdd:cd03254 91 -GTIMENIRLGrpnATDEEVIEAAKEAGAHDFIMKLpnGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSN 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 564358039 1981 MDPSARRFLWNNLLSvVREGRSVVLTSHsmeecealctRLAIMVN 2025
Cdd:cd03254 170 IDTETEKLIQEALEK-LMKGRTSIIIAH----------RLSTIKN 203
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
808-1006 |
2.04e-11 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 69.05 E-value: 2.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 808 RGLKKHFRGSPqpALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIR--PHLGIC- 884
Cdd:NF040905 5 RGITKTFPGVK--ALDDVNLSVREGEIHALCGENGAGKSTLMKVLSGVYPHGSYEGEILFDGEVCRFKDIRdsEALGIVi 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 885 -PQYNVLFDMLTVEEHVwFYG---RLKGVsaaaID-----SEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGG 955
Cdd:NF040905 83 iHQELALIPYLSIAENI-FLGnerAKRGV----IDwnetnRRARELLAKVGLDESPDTLVTDIGVGKQQLVEIAKALSKD 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 564358039 956 SRVVIMDEPTAGVDPASRRGIWELLLKYRE-GRTLILSTHHLDEAELLGDRV 1006
Cdd:NF040905 158 VKLLILDEPTAALNEEDSAALLDLLLELKAqGITSIIISHKLNEIRRVADSI 209
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
1812-2025 |
2.14e-11 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 66.70 E-value: 2.14e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1812 ATQGDVLVLRDLTKVYRGQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNV-AQEPSAA 1890
Cdd:PRK13648 2 EDKNSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAItDDNFEKL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1891 HRSMGYCPQ--------SDAIFDLLTGrehLELFArlrgVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATA 1962
Cdd:PRK13648 82 RKHIGIVFQnpdnqfvgSIVKYDVAFG---LENHA----VPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIA 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564358039 1963 LALVGDPAVVFLDEPTTGMDPSARRFLWnNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVN 2025
Cdd:PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLL-DLVRKVKSEHNITIISITHDLSEAMEADHVIVMN 216
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
820-1015 |
2.39e-11 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 68.49 E-value: 2.39e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 820 PALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTN---------MAAI---RPHLGICPQY 887
Cdd:PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRspqdglangIVYIsedRKRDGLVLGM 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 888 NVLFDM-LTVEEHV-WFYGRLKGvsaaaiDSEQEHLIRDVGLI----PKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIM 961
Cdd:PRK10762 346 SVKENMsLTALRYFsRAGGSLKH------ADEQQAVSDFIRLFniktPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLIL 419
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 564358039 962 DEPTAGVDPASRRGIWELLLKYR-EGRTLILSTHhlDEAELLG--DRVAMVASGSLC 1015
Cdd:PRK10762 420 DEPTRGVDVGAKKEIYQLINQFKaEGLSIILVSS--EMPEVLGmsDRILVMHEGRIS 474
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
1798-2011 |
2.93e-11 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 69.00 E-value: 2.93e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1798 DEDVVRERERVTKGATQGDvLVLRDLTKVYrGQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAV 1877
Cdd:TIGR01193 455 DSEFINKKKRTELNNLNGD-IVINDVSYSY-GYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEIL 532
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1878 LAGHNVAQ-EPSAAHRSMGYCPQSDAIFD-------LLTGREHLELFARLRGVPEAQVaQTALSGLvRLGLPSYADRPAG 1949
Cdd:TIGR01193 533 LNGFSLKDiDRHTLRQFINYLPQEPYIFSgsilenlLLGAKENVSQDEIWAACEIAEI-KDDIENM-PLGYQTELSEEGS 610
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564358039 1950 TYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVvrEGRSVVLTSHSME 2011
Cdd:TIGR01193 611 SISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS 670
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
1844-1984 |
2.95e-11 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 64.98 E-value: 2.95e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1844 PGECFGLLGVNGAGKTSTFRMVTGDTLPS---SGEAVLAGHNVAQEPSAAHRSMGYCPQSDAIFDLLTGREHLELFARLR 1920
Cdd:cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRTEGNvsvEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK 111
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564358039 1921 GvpeaqvaqtalSGLVRlGLpsyadrpagtySGGNKRKLATALALVGDPAVVFLDEPTTGMDPS 1984
Cdd:cd03233 112 G-----------NEFVR-GI-----------SGGERKRVSIAEALVSRASVLCWDNSTRGLDSS 152
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
1833-2027 |
4.34e-11 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 67.72 E-value: 4.34e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1833 PAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNV----AQEPSAAhrSMGYCPQS---DAIFD 1905
Cdd:PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVvtrsPQDGLAN--GIVYISEDrkrDGLVL 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1906 LLTGREHLEL-----FARLRGVPEAQVAQTALSGLVRL---GLPSyADRPAGTYSGGNKRKLATALALVGDPAVVFLDEP 1977
Cdd:PRK10762 344 GMSVKENMSLtalryFSRAGGSLKHADEQQAVSDFIRLfniKTPS-MEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEP 422
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 564358039 1978 TTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:PRK10762 423 TRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGR 472
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
1817-2027 |
4.69e-11 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 66.53 E-value: 4.69e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTKVY---RGQRSP-----AVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPS 1888
Cdd:PRK11308 5 LLQAIDLKKHYpvkRGLFKPerlvkALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1889 AAHRSM------------GYCPQSDAIFDLLTgrEHLELFARLrgvPEAQVAQTALSGLVRLGL-PSYADRPAGTYSGGN 1955
Cdd:PRK11308 85 EAQKLLrqkiqivfqnpyGSLNPRKKVGQILE--EPLLINTSL---SAAERREKALAMMAKVGLrPEHYDRYPHMFSGGQ 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564358039 1956 KRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVRE-GRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:PRK11308 160 RQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQElGLSYVFISHDLSVVEHIADEVMVMYLGR 232
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
1921-2011 |
5.42e-11 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 66.41 E-value: 5.42e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1921 GVPEAQVAQTALSGLVRLGLP-SYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVRE 1999
Cdd:PRK13631 146 GVKKSEAKKLAKFYLNKMGLDdSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKAN 225
|
90
....*....|..
gi 564358039 2000 GRSVVLTSHSME 2011
Cdd:PRK13631 226 NKTVFVITHTME 237
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
805-1012 |
5.88e-11 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 67.54 E-value: 5.88e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFRGSPqpALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIR----PH 880
Cdd:TIGR02633 2 LEMKGIVKTFGGVK--ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRdterAG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 881 LGICPQYNVLFDMLTVEEHVwFYGR---LKG--VSAAAIDSEQEHLIRDVGLIPKRDTQ-TRHLSGGMQRKLSVAIAFVG 954
Cdd:TIGR02633 80 IVIIHQELTLVPELSVAENI-FLGNeitLPGgrMAYNAMYLRAKNLLRELQLDADNVTRpVGDYGGGQQQLVEIAKALNK 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 955 GSRVVIMDEPTAGVDPASRRGIWELL--LKyREGRTLILSTHHLDEAELLGDRVAMVASG 1012
Cdd:TIGR02633 159 QARLLILDEPSSSLTEKETEILLDIIrdLK-AHGVACVYISHKLNEVKAVCDTICVIRDG 217
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
826-972 |
6.41e-11 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 63.82 E-value: 6.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 826 NLDFY--EGHITAFLGHNGAGKTTTLSILSGLFPPS---SGSASILGHDVQTNMAAIRPHLGICPQYNVLFDMLTVEEHV 900
Cdd:cd03233 25 DFSGVvkPGEMVLVLGRPGSGCSTLLKALANRTEGNvsvEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETL 104
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564358039 901 WFYGRLKGvsaaaidseqehlirdvglipkrDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPAS 972
Cdd:cd03233 105 DFALRCKG-----------------------NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSST 153
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
823-1014 |
7.16e-11 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 67.00 E-value: 7.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 823 RGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIRPHLGIC------PQYNVLFDM--- 893
Cdd:PRK15439 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVylpedrQSSGLYLDApla 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 894 -----LTVEEHVWFygrLKGVSAAAIdSEQEHliRDVGL-IPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAG 967
Cdd:PRK15439 360 wnvcaLTHNRRGFW---IKPARENAV-LERYR--RALNIkFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRG 433
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 564358039 968 VDPASRRGIWELLLKY-REGRTLILSTHHLDEAELLGDRVAMVASGSL 1014
Cdd:PRK15439 434 VDVSARNDIYQLIRSIaAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
1818-2027 |
8.07e-11 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 64.95 E-value: 8.07e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYRGQRspAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAG-----HNVAQEPSAAHR 1892
Cdd:PRK11701 7 LSVRGLTKLYGPRK--GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMrdgqlRDLYALSEAERR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1893 SM-----GYCPQSDAifDLLtgREHLELFA----RLRGVPE---AQVAQTALSGLVRLGL-PSYADRPAGTYSGGNKRKL 1959
Cdd:PRK11701 85 RLlrtewGFVHQHPR--DGL--RMQVSAGGnigeRLMAVGArhyGDIRATAGDWLERVEIdAARIDDLPTTFSGGMQQRL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564358039 1960 ATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVRE-GRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:PRK11701 161 QIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRElGLAVVIVTHDLAVARLLAHRLLVMKQGR 229
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
1836-2037 |
9.61e-11 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 64.62 E-value: 9.61e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1836 DHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSA-AHRSMGYCPQS-----DAIFDLLTG 1909
Cdd:PRK10253 24 ENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKeVARRIGLLAQNattpgDITVQELVA 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1910 R---EHLELFARLRGVPEAQVAqtalSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSAR 1986
Cdd:PRK10253 104 RgryPHQPLFTRWRKEDEEAVT----KAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQ 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 564358039 1987 RFLWNNLLSVVRE-GRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHL 2037
Cdd:PRK10253 180 IDLLELLSELNREkGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
1817-2028 |
1.00e-10 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 66.57 E-value: 1.00e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTKVYRGQRspAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVA-------QEP-- 1887
Cdd:PRK10762 4 LLQLKGIDKAFPGVK--ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTfngpkssQEAgi 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1888 SAAHRSMGYCPQ---SDAIFdllTGREHLELFARLRGvpeAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALA 1964
Cdd:PRK10762 82 GIIHQELNLIPQltiAENIF---LGREFVNRFGRIDW---KKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKV 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564358039 1965 LVGDPAVVFLDEPTTGMDPSARRflwnNLLSVVRE----GRSVVLTSHSMEECEALCTRLAIMVNGRF 2028
Cdd:PRK10762 156 LSFESKVIIMDEPTDALTDTETE----SLFRVIRElksqGRGIVYISHRLKEIFEICDDVTVFRDGQF 219
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
1821-2014 |
1.09e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 64.82 E-value: 1.09e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1821 RDLTKVYRGQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTG----DTLPSSGEAVLaGHNVAQEPSAAHRS-MG 1895
Cdd:PRK13640 9 KHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGlllpDDNPNSKITVD-GITLTAKTVWDIREkVG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1896 YCPQS-DAIF-------DLLTGREHlelfarlRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVG 1967
Cdd:PRK13640 88 IVFQNpDNQFvgatvgdDVAFGLEN-------RAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAV 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 564358039 1968 DPAVVFLDEPTTGMDPSARrflwNNLLSVVRE-----GRSVVLTSHSMEECE 2014
Cdd:PRK13640 161 EPKIIILDESTSMLDPAGK----EQILKLIRKlkkknNLTVISITHDIDEAN 208
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
807-994 |
1.14e-10 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 66.63 E-value: 1.14e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 807 IRGLKKHFRGspQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHdvqtnmaaIRphLGICPQ 886
Cdd:COG0488 1 LENLSKSFGG--RPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIPKG--------LR--IGYLPQ 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 887 YNVLFDMLTVEEHVwFYG---------RLKGVSAAAIDSEQ--------------------EHLIRDV--GL-IPKR--D 932
Cdd:COG0488 69 EPPLDDDLTVLDTV-LDGdaelraleaELEELEAKLAEPDEdlerlaelqeefealggweaEARAEEIlsGLgFPEEdlD 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564358039 933 TQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRgiW--ELLLKYReGrTLILSTH 994
Cdd:COG0488 148 RPVSELSGGWRRRVALARALLSEPDLLLLDEPTNHLDLESIE--WleEFLKNYP-G-TVLVVSH 207
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
1817-2027 |
1.27e-10 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 63.86 E-value: 1.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTKVYRGQrsPAVDHLCLGIPPGECFGLLGVNGAGKtSTF-RMVTGDTLPSSGEAVLAGHNVAQEPSAAH---R 1892
Cdd:COG1126 1 MIEIENLHKSFGDL--EVLKGISLDVEKGEVVVIIGPSGSGK-STLlRCINLLEEPDSGTITVDGEDLTDSKKDINklrR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1893 SMGYCPQSdaiFDL---LTGREHLELfA--RLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVG 1967
Cdd:COG1126 78 KVGMVFQQ---FNLfphLTVLENVTL-ApiKVKKMSKAEAEERAMELLERVGLADKADAYPAQLSGGQQQRVAIARALAM 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564358039 1968 DPAVVFLDEPTTGMDPSarrfLWNNLLSVVR----EGRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:COG1126 154 EPKVMLFDEPTSALDPE----LVGEVLDVMRdlakEGMTMVVVTHEMGFAREVADRVVFMDGGR 213
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
1820-2043 |
1.36e-10 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 66.45 E-value: 1.36e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1820 LRDL-TKVYRGQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGhnvaqepSAAHRSMgycp 1898
Cdd:PRK13545 24 LKDLfFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG-------SAALIAI---- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1899 qSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPT 1978
Cdd:PRK13545 93 -SSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEAL 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564358039 1979 TGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHLKSRFGA 2043
Cdd:PRK13545 172 SVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDE 236
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
1818-2008 |
1.38e-10 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 66.53 E-value: 1.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYrGQRSPAVDHLCLGIPPGECFGLLGVNGAGKtSTFRMV-TGDTLPSSGEAVLAGHNVAQEPSAAHRSmgy 1896
Cdd:PRK10522 323 LELRNVTFAY-QDNGFSVGPINLTIKRGELLFLIGGNGSGK-STLAMLlTGLYQPQSGEILLDGKPVTAEQPEDYRK--- 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1897 cpQSDAIFdlltgrEHLELFARLRGvPEAQVAQTAL--SGLVRLGLPSYADRPAGT-----YSGGNKRKLATALALVGDP 1969
Cdd:PRK10522 398 --LFSAVF------TDFHLFDQLLG-PEGKPANPALveKWLERLKMAHKLELEDGRisnlkLSKGQKKRLALLLALAEER 468
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 564358039 1970 AVVFLDEPTTGMDPSARRFLWNNLLSVVRE-GRSVVLTSH 2008
Cdd:PRK10522 469 DILLLDEWAADQDPHFRREFYQVLLPLLQEmGKTIFAISH 508
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
1817-2027 |
1.59e-10 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 66.00 E-value: 1.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTKVYRGQRspAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGdTLPS---SGEAVLAG-----HNVAQEPS 1888
Cdd:TIGR02633 1 LLEMKGIVKTFGGVK--ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSG-VYPHgtwDGEIYWSGsplkaSNIRDTER 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1889 AA----HRSMGYCPQSDAIFDLLTGREhLELFARLRGVPEAQVAQTALsgLVRLGLPSYAD-RPAGTYSGGNKRKLATAL 1963
Cdd:TIGR02633 78 AGiviiHQELTLVPELSVAENIFLGNE-ITLPGGRMAYNAMYLRAKNL--LRELQLDADNVtRPVGDYGGGQQQLVEIAK 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564358039 1964 ALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:TIGR02633 155 ALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQ 218
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
805-994 |
1.87e-10 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 60.93 E-value: 1.87e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFrgSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSasilghdvqtnmaairphlgic 884
Cdd:cd03221 1 IELENLSKTY--GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGI---------------------- 56
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 885 pqynvlfdmltveehVWFYGRLKgvsaaaidseqehlirdVGLIPkrdtqtrHLSGGMQRKLSVAIAFVGGSRVVIMDEP 964
Cdd:cd03221 57 ---------------VTWGSTVK-----------------IGYFE-------QLSGGEKMRLALAKLLLENPNLLLLDEP 97
|
170 180 190
....*....|....*....|....*....|
gi 564358039 965 TAGVDPASRRGIWELLLKYRegRTLILSTH 994
Cdd:cd03221 98 TNHLDLESIEALEEALKEYP--GTVILVSH 125
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
1817-2012 |
2.98e-10 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 62.42 E-value: 2.98e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTkvYRGQRSPAVDHLCLGIPPGEcFGLL-GVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAHR-SM 1894
Cdd:PRK10247 7 LLQLQNVG--YLAGDAKILNNISFSLRAGE-FKLItGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRqQV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1895 GYCPQSDAIF-DllTGREHLELFARLRG-VPEaqvAQTALSGLVRLGLP-SYADRPAGTYSGGNKRKLATALALVGDPAV 1971
Cdd:PRK10247 84 SYCAQTPTLFgD--TVYDNLIFPWQIRNqQPD---PAIFLDDLERFALPdTILTKNIAELSGGEKQRISLIRNLQFMPKV 158
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 564358039 1972 VFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVL-TSHSMEE 2012
Cdd:PRK10247 159 LLLDEITSALDESNKHNVNEIIHRYVREQNIAVLwVTHDKDE 200
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
804-1013 |
3.04e-10 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 62.28 E-value: 3.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 804 GVSIRGLKKHFrgspqpaLRGLNLDFYEGHITAFLGHNGAGKTTTLSILSG--LFPPSSGSASILGHDVQTNMAAIrphl 881
Cdd:COG2401 35 GVELRVVERYV-------LRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGalKGTPVAGCVDVPDNQFGREASLI---- 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 882 gicpqynvlfdmltveEHVWfygrLKGVSAAAIDseqehLIRDVGLipkRDTQT-----RHLSGGMQRKLSVAIAFVGGS 956
Cdd:COG2401 104 ----------------DAIG----RKGDFKDAVE-----LLNAVGL---SDAVLwlrrfKELSTGQKFRFRLALLLAERP 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564358039 957 RVVIMDEPTAGVDPA-SRRG--IWELLLKyREGRTLILSTHHLD-EAELLGDRVAMVASGS 1013
Cdd:COG2401 156 KLLVIDEFCSHLDRQtAKRVarNLQKLAR-RAGITLVVATHHYDvIDDLQPDLLIFVGYGG 215
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
1840-2012 |
3.14e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 63.60 E-value: 3.14e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1840 LGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSG-----EAVLAGHNVAQEPSAAHRSMGYC---PQSD-----AIFDL 1906
Cdd:PRK13643 27 LEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGkvtvgDIVVSSTSKQKEIKPVRKKVGVVfqfPESQlfeetVLKDV 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1907 LTGREHLelfarlrGVPEAQVAQTALSGLVRLGLP-SYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSA 1985
Cdd:PRK13643 107 AFGPQNF-------GIPKEKAEKIAAEKLEMVGLAdEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKA 179
|
170 180
....*....|....*....|....*..
gi 564358039 1986 RRFLWNNLLSVVREGRSVVLTSHSMEE 2012
Cdd:PRK13643 180 RIEMMQLFESIHQSGQTVVLVTHLMDD 206
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
1818-2008 |
3.24e-10 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 60.15 E-value: 3.24e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYRGQrsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEaVLAGHNVaqepsaahrSMGYC 1897
Cdd:cd03221 1 IELENLSKTYGGK--LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGI-VTWGSTV---------KIGYF 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1898 PQsdaifdlltgrehlelfarlrgvpeaqvaqtalsglvrlglpsyadrpagtYSGGNKRKLATALALVGDPAVVFLDEP 1977
Cdd:cd03221 69 EQ---------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEP 97
|
170 180 190
....*....|....*....|....*....|.
gi 564358039 1978 TTGMDPSARRFLwNNLLSvvREGRSVVLTSH 2008
Cdd:cd03221 98 TNHLDLESIEAL-EEALK--EYPGTVILVSH 125
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
808-1012 |
3.77e-10 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 64.95 E-value: 3.77e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 808 RGLKKHFRGSPqpALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASIL--GHDVQTN---------MAA 876
Cdd:PRK13549 9 KNITKTFGGVK--ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIfeGEELQASnirdteragIAI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 877 IRPHLGICPQYNVLFDMLTVEEHVWFyGRLkgvSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGS 956
Cdd:PRK13549 87 IHQELALVKELSVLENIFLGNEITPG-GIM---DYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQA 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 564358039 957 RVVIMDEPTAGVDPASRRGIWELL--LKyREGRTLILSTHHLDEAELLGDRVAMVASG 1012
Cdd:PRK13549 163 RLLILDEPTASLTESETAVLLDIIrdLK-AHGIACIYISHKLNEVKAISDTICVIRDG 219
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
1796-2008 |
4.08e-10 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 64.80 E-value: 4.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1796 EEDEDVVRERERVTKGATQGDVlVLRDLTKVYRGQRsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGE 1875
Cdd:COG1132 319 DEPPEIPDPPGAVPLPPVRGEI-EFENVSFSYPGDR-PVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGR 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1876 AVLAGHNVAQEPSAAHRS-MGYCPQSDAIFDlLTGREHLeLFARLrGVPEAQVAQTA----LSGLVRlGLPS-YaDRPAG 1949
Cdd:COG1132 397 ILIDGVDIRDLTLESLRRqIGVVPQDTFLFS-GTIRENI-RYGRP-DATDEEVEEAAkaaqAHEFIE-ALPDgY-DTVVG 471
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564358039 1950 ----TYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNlLSVVREGRSVVLTSH 2008
Cdd:COG1132 472 ergvNLSGGQRQRIAIARALLKDPPILILDEATSALDTETEALIQEA-LERLMKGRTTIVIAH 533
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
1835-2039 |
4.17e-10 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 62.81 E-value: 4.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1835 VDHLCLGIPPGECFGLLGVNGAGKTSTFRMVT--GDTLPS---SGEAVLAGHNV--AQEPSAAHRSMGYCPQSDAIF--- 1904
Cdd:PRK14271 37 LDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNrmNDKVSGyrySGDVLLGGRSIfnYRDVLEFRRRVGMLFQRPNPFpms 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1905 ---DLLTGREHLELFAR--LRGVPEAQVAQTALSGLVRLGLpsyADRPAgTYSGGNKRKLATALALVGDPAVVFLDEPTT 1979
Cdd:PRK14271 117 imdNVLAGVRAHKLVPRkeFRGVAQARLTEVGLWDAVKDRL---SDSPF-RLSGGQQQLLCLARTLAVNPEVLLLDEPTS 192
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1980 GMDPSARRFLwNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHLKS 2039
Cdd:PRK14271 193 ALDPTTTEKI-EEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
1823-2027 |
5.38e-10 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 61.81 E-value: 5.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1823 LTKVYRGQRSpAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQ----EPSAAHRSMGYCP 1898
Cdd:PRK10908 7 VSKAYLGGRQ-ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRlknrEVPFLRRQIGMIF 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1899 QSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPT 1978
Cdd:PRK10908 86 QDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPT 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 564358039 1979 TGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:PRK10908 166 GNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGH 214
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
794-996 |
7.16e-10 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 64.21 E-value: 7.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 794 VEEPP----PGLVPG-VSIRGLKKHFRGSPQpALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGH 868
Cdd:PRK13657 319 VRDPPgaidLGRVKGaVEFDDVSFSYDNSRQ-GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGT 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 869 DVQT-NMAAIRPHLGICPQYNVLFDMlTVEEHVWFyGR--------LKGVSAAA----IDSEQEHLIRDVGlipkrdTQT 935
Cdd:PRK13657 398 DIRTvTRASLRRNIAVVFQDAGLFNR-SIEDNIRV-GRpdatdeemRAAAERAQahdfIERKPDGYDTVVG------ERG 469
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564358039 936 RHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELLLKYREGRTLILSTHHL 996
Cdd:PRK13657 470 RQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRL 530
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1794-2027 |
9.06e-10 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 63.65 E-value: 9.06e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1794 LGEEDEDVVRERERVTKGATQGDVLVLRDLTKVYRGQrspaVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSS 1873
Cdd:PRK09700 242 VGRELQNRFNAMKENVSNLAHETVFEVRNVTSRDRKK----VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAG 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1874 GEAVLAGHNVaqEPS----AAHRSMGYCPQS---DAIFDLLTGREHLEL-----FARLRG----VPEAQVAQTALSGLVR 1937
Cdd:PRK09700 318 GEIRLNGKDI--SPRspldAVKKGMAYITESrrdNGFFPNFSIAQNMAIsrslkDGGYKGamglFHEVDEQRTAENQREL 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1938 LGLP-SYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEAL 2016
Cdd:PRK09700 396 LALKcHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITV 475
|
250
....*....|.
gi 564358039 2017 CTRLAIMVNGR 2027
Cdd:PRK09700 476 CDRIAVFCEGR 486
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
1783-2027 |
9.89e-10 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 63.72 E-value: 9.89e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1783 LPQPKSRLPPPlgEED-----EDVVRERERVTKGATQGDVLvlrdlTKVYRgqRSPAVDHLCLGIPPGECFGLLGVNGAG 1857
Cdd:PRK10261 292 LEHPAKQEPPI--EQDtvvdgEPILQVRNLVTRFPLRSGLL-----NRVTR--EVHAVEKVSFDLWPGETLSLVGESGSG 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1858 KTSTFRMVTGDTLPSSGEAVLAGHNV----AQEPSAAHRSMGYCPQSD-AIFD--LLTGREHLELFaRLRGVPEAQVAQT 1930
Cdd:PRK10261 363 KSTTGRALLRLVESQGGEIIFNGQRIdtlsPGKLQALRRDIQFIFQDPyASLDprQTVGDSIMEPL-RVHGLLPGKAAAA 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1931 ALSGLV-RLGL-PSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVRE-GRSVVLTS 2007
Cdd:PRK10261 442 RVAWLLeRVGLlPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDfGIAYLFIS 521
|
250 260
....*....|....*....|
gi 564358039 2008 HSMEECEALCTRLAIMVNGR 2027
Cdd:PRK10261 522 HDMAVVERISHRVAVMYLGQ 541
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
1822-2026 |
1.32e-09 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 61.72 E-value: 1.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1822 DLTKVYRgQRSP----AVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAH-----R 1892
Cdd:PRK13646 7 NVSYTYQ-KGTPyehqAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYirpvrK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1893 SMGYC---PQSDaIFDLLTGREhLELFARLRGVPEAQVAQTALSGLVRLGLP-SYADRPAGTYSGGNKRKLATALALVGD 1968
Cdd:PRK13646 86 RIGMVfqfPESQ-LFEDTVERE-IIFGPKNFKMNLDEVKNYAHRLLMDLGFSrDVMSQSPFQMSGGQMRKIAIVSILAMN 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 564358039 1969 PAVVFLDEPTTGMDPSARRFLWNNLLSV-VREGRSVVLTSHSMEECEALCTRLAIMVNG 2026
Cdd:PRK13646 164 PDIIVLDEPTAGLDPQSKRQVMRLLKSLqTDENKTIILVSHDMNEVARYADEVIVMKEG 222
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
1793-2008 |
1.38e-09 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 63.03 E-value: 1.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1793 PLGEEDEDVVRERERVTKGAtqGDVLVLRDLTkvyrgqrspavdhlcLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPS 1872
Cdd:TIGR03719 313 PPGPRLGDKVIEAENLTKAF--GDKLLIDDLS---------------FKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1873 SGEAVLaGHNVaqepsaahrSMGYCPQSdaifdlltgREHLElfarlrgvPEAQVAQTALSGL--VRLG---LPSYA--- 1944
Cdd:TIGR03719 376 SGTIEI-GETV---------KLAYVDQS---------RDALD--------PNKTVWEEISGGLdiIKLGkreIPSRAyvg 428
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564358039 1945 ---------DRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVvreGRSVVLTSH 2008
Cdd:TIGR03719 429 rfnfkgsdqQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLNF---AGCAVVISH 498
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
1813-2027 |
1.43e-09 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 60.85 E-value: 1.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1813 TQGDVLVLRDLTKVYrGQRSpAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEaVLAGhnvaqepSAahr 1892
Cdd:PRK11247 8 NQGTPLLLNAVSKRY-GERT-VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGE-LLAG-------TA--- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1893 smgycPQSDAifdlltgREHLEL-FARLRGVPEAQV------------AQTALSGLVRLGLPSYA-DRPAgTYSGGNKRK 1958
Cdd:PRK11247 75 -----PLAEA-------REDTRLmFQDARLLPWKKVidnvglglkgqwRDAALQALAAVGLADRAnEWPA-ALSGGQKQR 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1959 LATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVRE-GRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:PRK11247 142 VALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQhGFTVLLVTHDVSEAVAMADRVLLIEEGK 211
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
1818-2008 |
1.57e-09 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 63.20 E-value: 1.57e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYR-GQRSPAV-DHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPS---AAHR 1892
Cdd:PRK10535 5 LELKDIRRSYPsGEEQVEVlKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDAdalAQLR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1893 S--MGYCPQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPA 1970
Cdd:PRK10535 85 RehFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQ 164
|
170 180 190
....*....|....*....|....*....|....*...
gi 564358039 1971 VVFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVLTSH 2008
Cdd:PRK10535 165 VILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
789-996 |
1.71e-09 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 63.60 E-value: 1.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 789 DPKVLVEEPP--PGLvPGVSIR-GLKKHFRGSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASI 865
Cdd:PLN03130 598 EERVLLPNPPlePGL-PAISIKnGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV 676
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 866 lghdvqtnmaaIRPHLGICPQYNVLFDMlTVEEHVWF--------YGRLKGVSAaaidseqehLIRDVGLIPKRDtQTR- 936
Cdd:PLN03130 677 -----------IRGTVAYVPQVSWIFNA-TVRDNILFgspfdperYERAIDVTA---------LQHDLDLLPGGD-LTEi 734
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564358039 937 -----HLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELLLKyRE--GRTLILSTHHL 996
Cdd:PLN03130 735 gergvNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIK-DElrGKTRVLVTNQL 800
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
1826-2026 |
1.87e-09 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 60.88 E-value: 1.87e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1826 VYRGQRSPAVDHL---CLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPS-AAHRSMGYCPQS- 1900
Cdd:PRK13642 11 VFKYEKESDVNQLngvSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVwNLRRKIGMVFQNp 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1901 DAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTG 1980
Cdd:PRK13642 91 DNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSM 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 564358039 1981 MDPSARrflwNNLLSVVREGR-----SVVLTSHSMEECeALCTRLAIMVNG 2026
Cdd:PRK13642 171 LDPTGR----QEIMRVIHEIKekyqlTVLSITHDLDEA-ASSDRILVMKAG 216
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
1820-2011 |
2.01e-09 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 61.26 E-value: 2.01e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1820 LRDLTKVYRgQRSP----AVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGE-----------------AVL 1878
Cdd:PRK13651 5 VKNIVKIFN-KKLPtelkALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTiewifkdeknkkktkekEKV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1879 AGHNVAQEP--------SAAHRSMGYCPQSdAIFDLL--TGREHLELFARLRGVPEAQVAQTALSGLVRLGLP-SYADRP 1947
Cdd:PRK13651 84 LEKLVIQKTrfkkikkiKEIRRRVGVVFQF-AEYQLFeqTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDeSYLQRS 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564358039 1948 AGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSME 2011
Cdd:PRK13651 163 PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD 226
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1804-2027 |
2.09e-09 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 62.39 E-value: 2.09e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1804 ERERVTKGATQGDVLVLRDLTKVYRGQRS---------PAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGdTLPSSG 1874
Cdd:COG4172 262 RGDPRPVPPDAPPLLEARDLKVWFPIKRGlfrrtvghvKAVDGVSLTLRRGETLGLVGESGSGKSTLGLALLR-LIPSEG 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1875 EAVLAGHNVAQEPSAAHRSMgycpqsdaifdlltgREHLEL-----FA----RLR--------------GVPEAQVAQTA 1931
Cdd:COG4172 341 EIRFDGQDLDGLSRRALRPL---------------RRRMQVvfqdpFGslspRMTvgqiiaeglrvhgpGLSAAERRARV 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1932 LSGLVRLGL-PSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVRE-GRSVVLTSHS 2009
Cdd:COG4172 406 AEALEEVGLdPAARHRYPHEFSGGQRQRIAIARALILEPKLLVLDEPTSALDVSVQAQILDLLRDLQREhGLAYLFISHD 485
|
250
....*....|....*...
gi 564358039 2010 MEECEALCTRLAIMVNGR 2027
Cdd:COG4172 486 LAVVRALAHRVMVMKDGK 503
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
1833-2008 |
2.66e-09 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 62.28 E-value: 2.66e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1833 PAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVA----QEPSAAhrsmgycpQSDAIFDLLT 1908
Cdd:PRK11147 17 PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVarlqQDPPRN--------VEGTVYDFVA 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1909 G-----REHLELF-------------------ARLRGVP--------EAQVAQTalsgLVRLGLPsyADRPAGTYSGGNK 1956
Cdd:PRK11147 89 EgieeqAEYLKRYhdishlvetdpseknlnelAKLQEQLdhhnlwqlENRINEV----LAQLGLD--PDAALSSLSGGWL 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 564358039 1957 RKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVvrEGrSVVLTSH 2008
Cdd:PRK11147 163 RKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QG-SIIFISH 211
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
819-995 |
2.77e-09 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 59.19 E-value: 2.77e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 819 QPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIRPHLGICPQYNVLFDMLTVEE 898
Cdd:PRK13540 14 QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 899 HVWFygrlkGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWE 978
Cdd:PRK13540 94 NCLY-----DIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIIT 168
|
170
....*....|....*...
gi 564358039 979 LLLKYR-EGRTLILSTHH 995
Cdd:PRK13540 169 KIQEHRaKGGAVLLTSHQ 186
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
1815-2033 |
3.00e-09 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 60.41 E-value: 3.00e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1815 GDVlVLRDLTKVYrGQRSP----AVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVL------AGHNVA 1884
Cdd:PRK13645 5 KDI-ILDNVSYTY-AKKTPfefkALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVgdyaipANLKKI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1885 QEPSAAHRSMGYCPQ-------SDAI-FDLLTGREHLelfarlrGVPEAQVAQTALSGLVRLGLP-SYADRPAGTYSGGN 1955
Cdd:PRK13645 83 KEVKRLRKEIGLVFQfpeyqlfQETIeKDIAFGPVNL-------GENKQEAYKKVPELLKLVQLPeDYVKRSPFELSGGQ 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564358039 1956 KRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVRE-GRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGS 2033
Cdd:PRK13645 156 KRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEyKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
1829-2010 |
3.24e-09 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 59.74 E-value: 3.24e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1829 GQRSPAVDhLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGeavlaghNVAQEPSAahrSMGYCPQS---DAIFD 1905
Cdd:PRK09544 15 GQRRVLSD-VSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEG-------VIKRNGKL---RIGYVPQKlylDTTLP 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1906 LLTGRehlelFARLR-GVPEAQVaqtaLSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPS 1984
Cdd:PRK09544 84 LTVNR-----FLRLRpGTKKEDI----LPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVN 154
|
170 180
....*....|....*....|....*..
gi 564358039 1985 ARRFLWNNLLSVVRE-GRSVVLTSHSM 2010
Cdd:PRK09544 155 GQVALYDLIDQLRRElDCAVLMVSHDL 181
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
816-1000 |
3.44e-09 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 61.96 E-value: 3.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 816 GSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQT-NMAAIRPHLGICPQyNV-LFDM 893
Cdd:PRK11176 353 GKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDyTLASLRNQVALVSQ-NVhLFND 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 894 lTVEEHVWF-----YGRLKGVSAAAIDSEQEHLIR-DVGLipkrDTQTRH----LSGGMQRKLSVAIAFVGGSRVVIMDE 963
Cdd:PRK11176 432 -TIANNIAYarteqYSREQIEEAARMAYAMDFINKmDNGL----DTVIGEngvlLSGGQRQRIAIARALLRDSPILILDE 506
|
170 180 190
....*....|....*....|....*....|....*..
gi 564358039 964 PTAGVDPASRRGIWELLLKYREGRTLILSTHHLDEAE 1000
Cdd:PRK11176 507 ATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE 543
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
1838-1982 |
4.27e-09 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 59.80 E-value: 4.27e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1838 LCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAH-RSMGYCPQSDAIFDLLTGRehlELF 1916
Cdd:PRK10575 30 LSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFaRKVAYLPQQLPAAEGMTVR---ELV 106
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564358039 1917 ARLR----------GVPEAQVAQTALSgLVrlGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMD 1982
Cdd:PRK10575 107 AIGRypwhgalgrfGAADREKVEEAIS-LV--GLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
806-1007 |
4.38e-09 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 61.62 E-value: 4.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 806 SIRGLKKHFRGS--PQPALRGLNLDFYEGHITAFLGHNGAGKT-TTLSILsGLFPPS----SGSASILGHDV-------- 870
Cdd:COG4172 8 SVEDLSVAFGQGggTVEAVKGVSFDIAAGETLALVGESGSGKSvTALSIL-RLLPDPaahpSGSILFDGQDLlglserel 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 871 ------------QTNMAAIRPHLGICPQynvLFDMLTVeeHvwfygrlKGVSAAAIDSEQEHLIRDVGLipkRDTQTR-- 936
Cdd:COG4172 87 rrirgnriamifQEPMTSLNPLHTIGKQ---IAEVLRL--H-------RGLSGAAARARALELLERVGI---PDPERRld 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564358039 937 ---H-LSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELL--LKYREGRTLILSTHHLDEAELLGDRVA 1007
Cdd:COG4172 152 aypHqLSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLkdLQRELGMALLLITHDLGVVRRFADRVA 228
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
1842-2008 |
4.53e-09 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 61.82 E-value: 4.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1842 IPPGECFGLLGVNGAGKTSTFRMVTGDTLPSS--GEAVLAGHNVAQEpsaAHRSMGYCPQSDAIFDLLTGREHLELFARL 1919
Cdd:PLN03211 91 ASPGEILAVLGPSGSGKSTLLNALAGRIQGNNftGTILANNRKPTKQ---ILKRTGFVTQDDILYPHLTVRETLVFCSLL 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1920 RgVPEAQVAQ----TALSGLVRLGLPSYADRPAGT-----YSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLW 1990
Cdd:PLN03211 168 R-LPKSLTKQekilVAESVISELGLTKCENTIIGNsfirgISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLV 246
|
170
....*....|....*...
gi 564358039 1991 NNLLSVVREGRSVVLTSH 2008
Cdd:PLN03211 247 LTLGSLAQKGKTIVTSMH 264
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
832-994 |
5.81e-09 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 58.02 E-value: 5.81e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 832 GHITAFLGHNGAGKTTTLSILSGlfppsSGSASILGHDV----QTNMAAIRPHLGICPQYNVLFDMLTVEEHVWFYGRLK 907
Cdd:cd03232 33 GTLTALMGESGAGKTTLLDVLAG-----RKTAGVITGEIlingRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLR 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 908 GVSAAaidseqehlirdvglipkrdtqtrhlsggmQRK-LSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELLLKY-RE 985
Cdd:cd03232 108 GLSVE------------------------------QRKrLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLaDS 157
|
....*....
gi 564358039 986 GRTLILSTH 994
Cdd:cd03232 158 GQAILCTIH 166
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
831-1015 |
6.26e-09 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 60.99 E-value: 6.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 831 EGHITAFLGHNGAGKTTTLSILSGLFPPS-SGSASILGH--DVQTNMAAIRPHL----------GICPQYNVLFDM-LTV 896
Cdd:TIGR02633 285 RGEILGVAGLVGAGRTELVQALFGAYPGKfEGNVFINGKpvDIRNPAQAIRAGIamvpedrkrhGIVPILGVGKNItLSV 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 897 EEHVWFYGRlkgvsaaaIDSEQEHLIRDVGlIPKRDTQTRH-------LSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVD 969
Cdd:TIGR02633 365 LKSFCFKMR--------IDAAAELQIIGSA-IQRLKVKTASpflpigrLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVD 435
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 564358039 970 PASRRGIWELLLKY-REGRTLILSTHHLDEAELLGDRVAMVASGSLC 1015
Cdd:TIGR02633 436 VGAKYEIYKLINQLaQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLK 482
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
1833-2047 |
6.58e-09 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 58.71 E-value: 6.58e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1833 PAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAHRS-MGYCPQSDAIFDLlTGRE 1911
Cdd:cd03249 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSqIGLVSQEPVLFDG-TIAE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1912 HLELFARLRGVPEA-QVAQTALSGLVRLGLPSYADRPAGTY----SGGNKRKLATALALVGDPAVVFLDEPTTGMDPSAR 1986
Cdd:cd03249 96 NIRYGKPDATDEEVeEAAKKANIHDFIMSLPDGYDTLVGERgsqlSGGQKQRIAIARALLRNPKILLLDEATSALDAESE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564358039 1987 RfLWNNLLSVVREGRSVVLTSHSmeeceaLCT-----RLAIMVNGRFRCLGSAQHLKSRFGAGHTL 2047
Cdd:cd03249 176 K-LVQEALDRAMKGRTTIVIAHR------LSTirnadLIAVLQNGQVVEQGTHDELMAQKGVYAKL 234
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
1820-2027 |
6.64e-09 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 59.23 E-value: 6.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1820 LRDLTKVYRGQRSPAVDHLCLGIPPGECFGLLGVNGAGKtSTF-RMVTGDTLPSSGEAVLAGHNVAQEP-SAAHRSMGYC 1897
Cdd:PRK13632 10 VENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGK-STIsKILTGLLKPQSGEIKIDGITISKENlKEIRKKIGII 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1898 PQS-DAIF-------DLLTGREHlelfarlRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDP 1969
Cdd:PRK13632 89 FQNpDNQFigatvedDIAFGLEN-------KKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNP 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 564358039 1970 AVVFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVLT-SHSMEECeALCTRLAIMVNGR 2027
Cdd:PRK13632 162 EIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISiTHDMDEA-ILADKVIVFSEGK 219
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
1842-2020 |
7.74e-09 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 57.94 E-value: 7.74e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1842 IPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAahRSMGYCPQSDAIFDLLTGREHLELFARLRG 1921
Cdd:PRK13543 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRS--RFMAYLGHLPGLKADLSTLENLHFLCGLHG 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1922 vpeAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVREGR 2001
Cdd:PRK13543 112 ---RRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGG 188
|
170
....*....|....*....
gi 564358039 2002 SVVLTSHSMEECEALCTRL 2020
Cdd:PRK13543 189 AALVTTHGAYAAPPVRTRM 207
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
1818-1982 |
7.96e-09 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 59.86 E-value: 7.96e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYRGqRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQ-EPsaAHRSMGY 1896
Cdd:PRK11650 4 LKLQAVRKSYDG-KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNElEP--ADRDIAM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1897 CPQSDAIFDLLTGREHLELFARLRGVPEAQ----VAQTALSglvrLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVV 1972
Cdd:PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEieerVAEAARI----LELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVF 156
|
170
....*....|
gi 564358039 1973 FLDEPTTGMD 1982
Cdd:PRK11650 157 LFDEPLSNLD 166
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
796-970 |
8.43e-09 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 57.94 E-value: 8.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 796 EPPPGLVPGVSIRGLKkhFRGSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDV----Q 871
Cdd:PRK13543 3 EPLHTAPPLLAAHALA--FSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTAtrgdR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 872 TNMAAIRPHLGICPQynvlfDMLTVeEHVWFYGRLKGVSAAAIDSEQEHLirdVGLIPKRDTQTRHLSGGMQRKLSVAIA 951
Cdd:PRK13543 81 SRFMAYLGHLPGLKA-----DLSTL-ENLHFLCGLHGRRAKQMPGSALAI---VGLAGYEDTLVRQLSAGQKKRLALARL 151
|
170
....*....|....*....
gi 564358039 952 FVGGSRVVIMDEPTAGVDP 970
Cdd:PRK13543 152 WLSPAPLWLLDEPYANLDL 170
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1845-2029 |
8.46e-09 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 60.33 E-value: 8.46e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1845 GECFGLLGVNGAGKTSTFRMVTGdTLP--SSGEAVLAGHNVA-QEPSAAHRS-MGYCPQS---DAIFDLLTGREHLEL-- 1915
Cdd:PRK13549 288 GEILGIAGLVGAGRTELVQCLFG-AYPgrWEGEIFIDGKPVKiRNPQQAIAQgIAMVPEDrkrDGIVPVMGVGKNITLaa 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1916 ---FARLRGVPEAQVAQTALSGLVRLGL-PSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWN 1991
Cdd:PRK13549 367 ldrFTGGSRIDDAAELKTILESIQRLKVkTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYK 446
|
170 180 190
....*....|....*....|....*....|....*...
gi 564358039 1992 NLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGRFR 2029
Cdd:PRK13549 447 LINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLK 484
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
832-995 |
9.43e-09 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 60.66 E-value: 9.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 832 GHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMAAIRpHLGICPQYNVLFDMLTVEEHVWFYGRL---KG 908
Cdd:PLN03211 94 GEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILK-RTGFVTQDDILYPHLTVRETLVFCSLLrlpKS 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 909 VSAAAIDSEQEHLIRDVGLIPKRDTQT-----RHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDP-ASRRGIWELLLK 982
Cdd:PLN03211 173 LTKQEKILVAESVISELGLTKCENTIIgnsfiRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDAtAAYRLVLTLGSL 252
|
170
....*....|...
gi 564358039 983 YREGRTLILSTHH 995
Cdd:PLN03211 253 AQKGKTIVTSMHQ 265
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
1817-2026 |
9.53e-09 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 58.63 E-value: 9.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTkVYRGQRSpAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVT--GDTLPS---SGEAVLAGHNVaqepsaah 1891
Cdd:PRK14239 5 ILQVSDLS-VYYNKKK-ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINrmNDLNPEvtiTGSIVYNGHNI-------- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1892 rsmgYCPQSDAIfDL---------------LTGREHLELFARLRGVPEAQVAQTAL-SGLVRLGL-PSYADR---PAGTY 1951
Cdd:PRK14239 75 ----YSPRTDTV-DLrkeigmvfqqpnpfpMSIYENVVYGLRLKGIKDKQVLDEAVeKSLKGASIwDEVKDRlhdSALGL 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564358039 1952 SGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSvVREGRSVVLTSHSMEECEALCTRLAIMVNG 2026
Cdd:PRK14239 150 SGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLG-LKDDYTMLLVTRSMQQASRISDRTGFFLDG 223
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
803-1014 |
1.15e-08 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 58.57 E-value: 1.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 803 PGVSIRGLKKHFRGspQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSG---SASIL--GHDV--QTNMA 875
Cdd:PRK14271 20 PAMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGyrySGDVLlgGRSIfnYRDVL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 876 AIRPHLGICPQYNVLFDMlTVEEHVwfygrLKGVSAAAIDSEQEHL------IRDVGL---IPKR--DTQTRhLSGGMQR 944
Cdd:PRK14271 98 EFRRRVGMLFQRPNPFPM-SIMDNV-----LAGVRAHKLVPRKEFRgvaqarLTEVGLwdaVKDRlsDSPFR-LSGGQQQ 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 945 KLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELLLKYREGRTLILSTHHLDEAELLGDRVAMVASGSL 1014
Cdd:PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRL 240
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
1820-2041 |
1.16e-08 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 60.20 E-value: 1.16e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1820 LRDLTKVYRGQRspAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTG--DTLPSSGEAVlagHNVA--------QEPSA 1889
Cdd:TIGR03269 3 VKNLTKKFDGKE--VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGmdQYEPTSGRII---YHVAlcekcgyvERPSK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1890 AHRSMGYCPQ------------SDAIFDLLTGREHLEL---FAR----------LRGVPEA-----QVAQTALSGLVRLG 1939
Cdd:TIGR03269 78 VGEPCPVCGGtlepeevdfwnlSDKLRRRIRKRIAIMLqrtFALygddtvldnvLEALEEIgyegkEAVGRAVDLIEMVQ 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1940 LPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVRE-GRSVVLTSHSMEECEALCT 2018
Cdd:TIGR03269 158 LSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKAsGISMVLTSHWPEVIEDLSD 237
|
250 260
....*....|....*....|...
gi 564358039 2019 RLAIMVNGRFRCLGSAQHLKSRF 2041
Cdd:TIGR03269 238 KAIWLENGEIKEEGTPDEVVAVF 260
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
805-996 |
1.17e-08 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 60.11 E-value: 1.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLkkHFRGSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSasILGHDV---QTNMAAIRPHL 881
Cdd:PRK10789 316 VNIRQF--TYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGD--IRFHDIpltKLQLDSWRSRL 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 882 GICPQYNVLFDMlTVEEHVWFyGRlkgvsAAAIDSEQEHLIR------DVGLIPK-RDTQTRH----LSGGMQRKLSVAI 950
Cdd:PRK10789 392 AVVSQTPFLFSD-TVANNIAL-GR-----PDATQQEIEHVARlasvhdDILRLPQgYDTEVGErgvmLSGGQKQRISIAR 464
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 564358039 951 AFVGGSRVVIMDEPTAGVDPASRRGIWELLLKYREGRTLILSTHHL 996
Cdd:PRK10789 465 ALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRL 510
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
796-1012 |
1.34e-08 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 58.15 E-value: 1.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 796 EPPPGLVPG--VSIRGLKKHFRGspQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSasILGHdvQTN 873
Cdd:PRK11247 2 MNTARLNQGtpLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGE--LLAG--TAP 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 874 MAAIRPHLGICPQYNVLFDMLTVEEHVWFygrlkGVSAAAIDSEQEHLiRDVGLIPKRDTQTRHLSGGMQRKLSVAIAFV 953
Cdd:PRK11247 76 LAEAREDTRLMFQDARLLPWKKVIDNVGL-----GLKGQWRDAALQAL-AAVGLADRANEWPAALSGGQKQRVALARALI 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564358039 954 GGSRVVIMDEPTAGVDPASRRGIWELL--LKYREGRTLILSTHHLDEAELLGDRVAMVASG 1012
Cdd:PRK11247 150 HRPGLLLLDEPLGALDALTRIEMQDLIesLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEG 210
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
820-1006 |
1.45e-08 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 59.54 E-value: 1.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 820 PALRG-LNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTN--MAAIRPHLGICPQ---YNVLFDM 893
Cdd:PRK11288 266 PGLREpISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRspRDAIRAGIMLCPEdrkAEGIIPV 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 894 LTVEEHVWFYGRLKGVSAAA-IDSEQE-----HLIRDVGL-IPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTA 966
Cdd:PRK11288 346 HSVADNINISARRHHLRAGClINNRWEaenadRFIRSLNIkTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTR 425
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 564358039 967 GVDPASRRGIWELLLKYRE-GRTLILSTHHLdeAELLG--DRV 1006
Cdd:PRK11288 426 GIDVGAKHEIYNVIYELAAqGVAVLFVSSDL--PEVLGvaDRI 466
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
817-994 |
1.81e-08 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 56.42 E-value: 1.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 817 SPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGsaSILGHDVQTNMAAiRPHLG-ICPQYNVLFDMlT 895
Cdd:PRK13541 11 IEQKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSG--NIYYKNCNINNIA-KPYCTyIGHNLGLKLEM-T 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 896 VEEHVWFYGRLKGvSAAAIDSEQeHLIRDVGLIpkrDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRG 975
Cdd:PRK13541 87 VFENLKFWSEIYN-SAETLYAAI-HYFKLHDLL---DEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDL 161
|
170 180
....*....|....*....|
gi 564358039 976 IWELL-LKYREGRTLILSTH 994
Cdd:PRK13541 162 LNNLIvMKANSGGIVLLSSH 181
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
1815-1983 |
1.89e-08 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 57.12 E-value: 1.89e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1815 GDVlVLRDLTKVYRGQRSPAVDHLCLGIPPGECFGLLGVNGAGKTST----FRMVTgdtlPSSGEAVLAGHNVAQEPSAA 1890
Cdd:cd03244 1 GDI-EFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLllalFRLVE----LSSGSILIDGVDISKIGLHD 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1891 HRS-MGYCPQsDAIfdLLTG--REHLELF-----ARLRGVPEaQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATA 1962
Cdd:cd03244 76 LRSrISIIPQ-DPV--LFSGtiRSNLDPFgeysdEELWQALE-RVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLA 151
|
170 180
....*....|....*....|.
gi 564358039 1963 LALVGDPAVVFLDEPTTGMDP 1983
Cdd:cd03244 152 RALLRKSKILVLDEATASVDP 172
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
1832-2027 |
2.42e-08 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 57.83 E-value: 2.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1832 SPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAG-----HNVAQEPSAAHRSMGYC---PQSDaI 1903
Cdd:PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDtlitsTSKNKDIKQIRKKVGLVfqfPESQ-L 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1904 F------DLLTGREHLelfarlrGVPEAQVAQTALSGLVRLGLP-SYADRPAGTYSGGNKRKLATALALVGDPAVVFLDE 1976
Cdd:PRK13649 99 FeetvlkDVAFGPQNF-------GVSQEEAEALAREKLALVGISeSLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDE 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 564358039 1977 PTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:PRK13649 172 PTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGK 222
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
1818-2008 |
2.47e-08 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 56.85 E-value: 2.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYRGQRsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQ-EPSAAHRSMGY 1896
Cdd:cd03253 1 IEFENVTFAYDPGR-PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREvTLDSLRRAIGV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1897 CPQSDAIFDllTGREHLELFARLRGVPEAQV--AQTALSGLVRLGLP-SYA----DRpaGTY-SGGNKRKLATALALVGD 1968
Cdd:cd03253 80 VPQDTVLFN--DTIGYNIRYGRPDATDEEVIeaAKAAQIHDKIMRFPdGYDtivgER--GLKlSGGEKQRVAIARAILKN 155
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 564358039 1969 PAVVFLDEPTTGMDPSARRFLWNNLLSvVREGRSVVLTSH 2008
Cdd:cd03253 156 PPILLLDEATSALDTHTEREIQAALRD-VSKGRTTIVIAH 194
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1817-1982 |
3.02e-08 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 58.93 E-value: 3.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTKVYR--GQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGdTLPS-----SGEAVLAGHNVAQEPSA 1889
Cdd:COG4172 6 LLSVEDLSVAFGqgGGTVEAVKGVSFDIAAGETLALVGESGSGKSVTALSILR-LLPDpaahpSGSILFDGQDLLGLSER 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1890 AHR-------SMgycpqsdaIFD--------LLT-GREHLELFARLRGVPEAQVAQTALSGLVRLGLPSyADRPAGTY-- 1951
Cdd:COG4172 85 ELRrirgnriAM--------IFQepmtslnpLHTiGKQIAEVLRLHRGLSGAAARARALELLERVGIPD-PERRLDAYph 155
|
170 180 190
....*....|....*....|....*....|...
gi 564358039 1952 --SGGNKRKLATALALVGDPAVVFLDEPTTGMD 1982
Cdd:COG4172 156 qlSGGQRQRVMIAMALANEPDLLIADEPTTALD 188
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
1838-2037 |
3.12e-08 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 56.98 E-value: 3.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1838 LCLGIPPGECFGLLGVNGAGKTSTFRM------VTGDTLPSSGEAVLAGHNVAQ-EPSAAHRSMGYCPQSDAIFDLLTGR 1910
Cdd:PRK14246 29 ITIKIPNNSIFGIMGPSGSGKSTLLKVlnrlieIYDSKIKVDGKVLYFGKDIFQiDAIKLRKEVGMVFQQPNPFPHLSIY 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1911 EHLELFARLRGVPEA-QVAQTALSGLVRLGL-PSYADR---PAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSA 1985
Cdd:PRK14246 109 DNIAYPLKSHGIKEKrEIKKIVEECLRKVGLwKEVYDRlnsPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVN 188
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 564358039 1986 RRFLwNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHL 2037
Cdd:PRK14246 189 SQAI-EKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
817-1019 |
4.20e-08 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 56.63 E-value: 4.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 817 SPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPP----SSGS----------ASILGHDVQTNMAAIRphlg 882
Cdd:PRK10418 14 AAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAgvrqTAGRvlldgkpvapCALRGRKIATIMQNPR---- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 883 icPQYNVLFDMLTveeHVWFYGRLKGVSAAaiDSEQEHLIRDVGLIPKRDTQTRH---LSGGMQRKLSVAIAFVGGSRVV 959
Cdd:PRK10418 90 --SAFNPLHTMHT---HARETCLALGKPAD--DATLTAALEAVGLENAARVLKLYpfeMSGGMLQRMMIALALLCEAPFI 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564358039 960 IMDEPTAGVDPASRRGIWELL--LKYREGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGS 1019
Cdd:PRK10418 163 IADEPTTDLDVVAQARILDLLesIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGD 224
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
807-1012 |
4.76e-08 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 58.20 E-value: 4.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 807 IRGLKKHFRGSPqpALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQ--TNMAAIRPHLGIC 884
Cdd:PRK10982 1 MSNISKSFPGVK--ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDfkSSKEALENGISMV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 885 PQYNVLFDMLTVEEHVWFyGR--LKGVSAaaidsEQEHLIRDVGLI---------PKRDTQTrhLSGGMQRKLSVAIAFV 953
Cdd:PRK10982 79 HQELNLVLQRSVMDNMWL-GRypTKGMFV-----DQDKMYRDTKAIfdeldididPRAKVAT--LSVSQMQMIEIAKAFS 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 954 GGSRVVIMDEPTAGVDPASRRGIWELLLKYRE-GRTLILSTHHLDEAELLGDRVAMVASG 1012
Cdd:PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKErGCGIVYISHKMEEIFQLCDEITILRDG 210
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
814-1012 |
4.80e-08 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 56.72 E-value: 4.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 814 FRGSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGH-----DVQTNMAAIR-----PHLGI 883
Cdd:PRK15112 21 FRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHplhfgDYSYRSQRIRmifqdPSTSL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 884 CPQYNV--LFDmltveehvwFYGRLK-GVSAAAIDSEQEHLIRDVGLIPKRDTQTRH-LSGGMQRKLSVAIAFVGGSRVV 959
Cdd:PRK15112 101 NPRQRIsqILD---------FPLRLNtDLEPEQREKQIIETLRQVGLLPDHASYYPHmLAPGQKQRLGLARALILRPKVI 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 564358039 960 IMDEPTAGVDPASRRGIWELLLKYRE--GRTLILSTHHLDEAELLGDRVAMVASG 1012
Cdd:PRK15112 172 IADEALASLDMSMRSQLINLMLELQEkqGISYIYVTQHLGMMKHISDQVLVMHQG 226
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
1803-1989 |
4.85e-08 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 58.28 E-value: 4.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1803 RERERVTKGATQGDVLVLRDLTkVYRGQRSPAVDHLCLGIPPGEcfGLL--GVNGAGKTSTFRMVTGdtLPSSGE---AV 1877
Cdd:COG4178 348 LPEAASRIETSEDGALALEDLT-LRTPDGRPLLEDLSLSLKPGE--RLLitGPSGSGKSTLLRAIAG--LWPYGSgriAR 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1878 LAGHNVA---QEPsaahrsmgYCPQSdaifdllTGREHLELFARLRGVPEAQVAQTalsgLVRLGLPSYADRP------A 1948
Cdd:COG4178 423 PAGARVLflpQRP--------YLPLG-------TLREALLYPATAEAFSDAELREA----LEAVGLGHLAERLdeeadwD 483
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 564358039 1949 GTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFL 1989
Cdd:COG4178 484 QVLSLGEQQRLAFARLLLHKPDWLFLDEATSALDEENEAAL 524
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
1830-2027 |
5.30e-08 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 55.17 E-value: 5.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1830 QRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGhnvaqepsaahrSMGYCPQ-----SDAIF 1904
Cdd:cd03250 16 ETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG------------SIAYVSQepwiqNGTIR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1905 D-LLTGREHLElfARLRGVPEAQVAQTALSGLvrlglpsyadrPAG----------TYSGGNKRKLATALALVGDPAVVF 1973
Cdd:cd03250 84 EnILFGKPFDE--ERYEKVIKACALEPDLEIL-----------PDGdlteigekgiNLSGGQKQRISLARAVYSDADIYL 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 564358039 1974 LDEPTTGMDPSARRFLWNN-LLSVVREGRSVVLTSHSMEECEAlCTRLAIMVNGR 2027
Cdd:cd03250 151 LDDPLSAVDAHVGRHIFENcILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDNGR 204
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
1813-2014 |
5.71e-08 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 55.55 E-value: 5.71e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1813 TQGDVLVLRDLTkvyrgqrspavdhlcLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGH----------- 1881
Cdd:cd03248 23 TRPDTLVLQDVS---------------FTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKpisqyehkylh 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1882 ----NVAQEPSAAHRSMgycpqSDAIFDLLTGREhlelFARLRGVPEAQVAQTALSGLvRLGLPSYADRPAGTYSGGNKR 1957
Cdd:cd03248 88 skvsLVGQEPVLFARSL-----QDNIAYGLQSCS----FECVKEAAQKAHAHSFISEL-ASGYDTEVGEKGSQLSGGQKQ 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 564358039 1958 KLATALALVGDPAVVFLDEPTTGMDPSARRFLwNNLLSVVREGRSVVLTSHSMEECE 2014
Cdd:cd03248 158 RVAIARALIRNPQVLILDEATSALDAESEQQV-QQALYDWPERRTVLVIAHRLSTVE 213
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
1817-2027 |
5.90e-08 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 57.82 E-value: 5.90e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTkvyrGQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQepSAAH----- 1891
Cdd:PRK10982 250 ILEVRNLT----SLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINN--HNANeainh 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1892 ---------RSMGYCPQSDAIFDLLTG--REHLELFARLRGVPEAQVAQTALSGLvRLGLPSYADrPAGTYSGGNKRKLA 1960
Cdd:PRK10982 324 gfalvteerRSTGIYAYLDIGFNSLISniRNYKNKVGLLDNSRMKSDTQWVIDSM-RVKTPGHRT-QIGSLSGGNQQKVI 401
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564358039 1961 TALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:PRK10982 402 IGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGL 468
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
1813-2043 |
8.52e-08 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 57.42 E-value: 8.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1813 TQGDVLVLRDLTkvyrgqrspavdhlcLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQ-EPSAAH 1891
Cdd:TIGR00958 490 NRPDVPVLKGLT---------------FTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQyDHHYLH 554
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1892 RSMGYCPQSDAIFdlltGREHLELFAR-LRGVPEAQV---AQTALSGLVRLGLPSYADR---PAGTY-SGGNKRKLATAL 1963
Cdd:TIGR00958 555 RQVALVGQEPVLF----SGSVRENIAYgLTDTPDEEImaaAKAANAHDFIMEFPNGYDTevgEKGSQlSGGQKQRIAIAR 630
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1964 ALVGDPAVVFLDEPTTGMDPSARRFLWNnllSVVREGRSVVLTSHSMEECEAlCTRLAIMVNGRFRCLGSAQHLKSRFGA 2043
Cdd:TIGR00958 631 ALVRKPRVLILDEATSALDAECEQLLQE---SRSRASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQLMEDQGC 706
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
805-996 |
8.61e-08 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 54.73 E-value: 8.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 805 VSIRGLKKHFRGSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQT-NMAAIRPHLGI 883
Cdd:cd03369 7 IEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTiPLEDLRSSLTI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 884 CPQYNVLFdMLTVEEHVWFYGRLKGVSAAAIDSeqehlIRDVGLipkrdtqtrHLSGGMQRKLSVAIAFVGGSRVVIMDE 963
Cdd:cd03369 87 IPQDPTLF-SGTIRSNLDPFDEYSDEEIYGALR-----VSEGGL---------NLSQGQRQLLCLARALLKRPRVLVLDE 151
|
170 180 190
....*....|....*....|....*....|...
gi 564358039 964 PTAGVDPASRRGIWELLLKYREGRTLILSTHHL 996
Cdd:cd03369 152 ATASIDYATDALIQKTIREEFTNSTILTIAHRL 184
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
1817-1982 |
1.05e-07 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 56.87 E-value: 1.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTKVYRGQRsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLA-GHNV---AQEP----- 1887
Cdd:TIGR03719 4 IYTMNRVSKVVPPKK-EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFNGEARPQpGIKVgylPQEPqldpt 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1888 ---------------SAAHR----SMGYCpQSDAIFDLLtgrehLELFARLRGVPEAQVAQTALSGLVR----LGLPSYa 1944
Cdd:TIGR03719 83 ktvrenveegvaeikDALDRfneiSAKYA-EPDADFDKL-----AAEQAELQEIIDAADAWDLDSQLEIamdaLRCPPW- 155
|
170 180 190
....*....|....*....|....*....|....*...
gi 564358039 1945 DRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMD 1982
Cdd:TIGR03719 156 DADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLD 193
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
1791-1982 |
1.11e-07 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 57.05 E-value: 1.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1791 PPPLGeedeDVVRERERVTKGAtqGDVLVLRDLTkvyrgqrspavdhlcLGIPPGECFGLLGVNGAGKTSTFRMVTGDTL 1870
Cdd:PRK11819 317 GPRLG----DKVIEAENLSKSF--GDRLLIDDLS---------------FSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1871 PSSGEAVLaGHNVaqepsaahrSMGYCPQSdaifdlltgREHLElfarlrgvPEAQVAQtALSG---LVRLG---LPS-- 1942
Cdd:PRK11819 376 PDSGTIKI-GETV---------KLAYVDQS---------RDALD--------PNKTVWE-EISGgldIIKVGnreIPSra 427
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 564358039 1943 YADR----------PAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMD 1982
Cdd:PRK11819 428 YVGRfnfkggdqqkKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
1816-2008 |
1.12e-07 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 55.30 E-value: 1.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1816 DVLVLRDLtKVYRGQrSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTG--DTLPS---SGEAVLAGHNVAQEPSAA 1890
Cdd:PRK14247 2 NKIEIRDL-KVSFGQ-VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRliELYPEarvSGEVYLDGQDIFKMDVIE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1891 HR---SMGY-----CPQSDAIFDLLTG-------REHLELFARLR-GVPEAQVAQTALSGLvrlglpsyaDRPAGTYSGG 1954
Cdd:PRK14247 80 LRrrvQMVFqipnpIPNLSIFENVALGlklnrlvKSKKELQERVRwALEKAQLWDEVKDRL---------DAPAGKLSGG 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 564358039 1955 NKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVREgRSVVLTSH 2008
Cdd:PRK14247 151 QQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKD-MTIVLVTH 203
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
1834-2032 |
1.15e-07 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 55.21 E-value: 1.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1834 AVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGhnvaqEPSAAHRSMGYCPQsdaifdlLTGREHL 1913
Cdd:PRK13546 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG-----EVSVIAISAGLSGQ-------LTGIENI 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1914 ELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNL 1993
Cdd:PRK13546 107 EFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKI 186
|
170 180 190
....*....|....*....|....*....|....*....
gi 564358039 1994 LSVVREGRSVVLTSHSMEECEALCTRLAIMVNGRFRCLG 2032
Cdd:PRK13546 187 YEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYG 225
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
828-1012 |
1.24e-07 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 55.11 E-value: 1.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 828 DFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVqtnmaAIRPHLgICPQYNVlfdmlTVEEhvWFYGRLK 907
Cdd:cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV-----SYKPQY-IKADYEG-----TVRD--LLSSITK 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 908 GV-SAAAIDSEqehLIRDVGLIPKRDTQTRHLSGG-MQRklsVAIAFVGG--SRVVIMDEPTAGVDPASR----RGIWEL 979
Cdd:cd03237 88 DFyTHPYFKTE---IAKPLQIEQILDREVPELSGGeLQR---VAIAACLSkdADIYLLDEPSAYLDVEQRlmasKVIRRF 161
|
170 180 190
....*....|....*....|....*....|...
gi 564358039 980 LLKyrEGRTLILSTHHLDEAELLGDRVaMVASG 1012
Cdd:cd03237 162 AEN--NEKTAFVVEHDIIMIDYLADRL-IVFEG 191
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
1840-2009 |
1.74e-07 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 54.85 E-value: 1.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1840 LGIPPGECFGLLGVNGAGKTSTFRMVT-----GDTLPSSGEAVLAGHNVAQE---PSAAHRSMGYCPQSDAIFDLLTGRE 1911
Cdd:PRK14267 25 LKIPQNGVFALMGPSGCGKSTLLRTFNrllelNEEARVEGEVRLFGRNIYSPdvdPIEVRREVGMVFQYPNPFPHLTIYD 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1912 HLELFARLRGVPEAQ----------VAQTALSGLVRLGLPSYAdrpaGTYSGGNKRKLATALALVGDPAVVFLDEPTTGM 1981
Cdd:PRK14267 105 NVAIGVKLNGLVKSKkeldervewaLKKAALWDEVKDRLNDYP----SNLSGGQRQRLVIARALAMKPKILLMDEPTANI 180
|
170 180
....*....|....*....|....*...
gi 564358039 1982 DPSARRFLwNNLLSVVREGRSVVLTSHS 2009
Cdd:PRK14267 181 DPVGTAKI-EELLFELKKEYTIVLVTHS 207
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
822-1020 |
1.98e-07 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 54.83 E-value: 1.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 822 LRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPS--SGSASILGhDVQTN---MAAIRPHLGIC-----PQYNVLF 891
Cdd:PRK13547 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGgaPRGARVTG-DVTLNgepLAAIDAPRLARlravlPQAAQPA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 892 DMLTVEEHVwFYGRLKGVSAAAIDSEQEHLIRDVGL-------IPKRDTQTrhLSGGMQRKLSVAIAF---------VGG 955
Cdd:PRK13547 96 FAFSAREIV-LLGRYPHARRAGALTHRDGEIAWQALalagataLVGRDVTT--LSGGELARVQFARVLaqlwpphdaAQP 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564358039 956 SRVVIMDEPTAGVDPASRRGIWELLLKY-REGRTLILS-THHLDEAELLGDRVAMVASGSLCCCGSP 1020
Cdd:PRK13547 173 PRYLLLDEPTAALDLAHQHRLLDTVRRLaRDWNLGVLAiVHDPNLAARHADRIAMLADGAIVAHGAP 239
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
1845-2011 |
3.13e-07 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 53.82 E-value: 3.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1845 GECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVaqepSAAHRSMGYCPQSDA-IFDLLTGR-----EHLELFAR 1918
Cdd:PRK10619 31 GDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTI----NLVRDKDGQLKVADKnQLRLLRTRltmvfQHFNLWSH 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1919 ---LRGVPEAQVAQTALSG----------LVRLGLpsyADRPAGTY----SGGNKRKLATALALVGDPAVVFLDEPTTGM 1981
Cdd:PRK10619 107 mtvLENVMEAPIQVLGLSKqeareravkyLAKVGI---DERAQGKYpvhlSGGQQQRVSIARALAMEPEVLLFDEPTSAL 183
|
170 180 190
....*....|....*....|....*....|
gi 564358039 1982 DPSARRFLWNNLLSVVREGRSVVLTSHSME 2011
Cdd:PRK10619 184 DPELVGEVLRIMQQLAEEGKTMVVVTHEMG 213
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
1842-2009 |
4.94e-07 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 51.94 E-value: 4.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1842 IPPGECFGLLGVNGAGKTStfrmVTGDTLPSSGEAVLAghnvaqepsaahrsmgycpqsdaifdlltgrEHLELFARLRG 1921
Cdd:cd03238 18 IPLNVLVVVTGVSGSGKST----LVNEGLYASGKARLI-------------------------------SFLPKFSRNKL 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1922 VPEAQvaqtaLSGLVRLGLpSYA--DRPAGTYSGGNKR--KLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVV 1997
Cdd:cd03238 63 IFIDQ-----LQFLIDVGL-GYLtlGQKLSTLSGGELQrvKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLI 136
|
170
....*....|..
gi 564358039 1998 REGRSVVLTSHS 2009
Cdd:cd03238 137 DLGNTVILIEHN 148
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
1850-2033 |
5.47e-07 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 54.11 E-value: 5.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1850 LLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGH---------NVAQEpsaaHRSMGYCPQSDAIFdlltgrEHLELFARLR 1920
Cdd:PRK11144 29 IFGRSGAGKTSLINAISGLTRPQKGRIVLNGRvlfdaekgiCLPPE----KRRIGYVFQDARLF------PHYKVRGNLR 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1921 -GVPEAQVAQtaLSGLVR-LGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVR 1998
Cdd:PRK11144 99 yGMAKSMVAQ--FDKIVAlLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAR 176
|
170 180 190
....*....|....*....|....*....|....*.
gi 564358039 1999 EGRSVVL-TSHSMEECEALCTRLAIMVNGRFRCLGS 2033
Cdd:PRK11144 177 EINIPILyVSHSLDEILRLADRVVVLEQGKVKAFGP 212
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
1817-1994 |
7.17e-07 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 52.87 E-value: 7.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTKVYR-------GQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVA----- 1884
Cdd:PRK15112 4 LLEVRNLSKTFRyrtgwfrRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHfgdys 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1885 ----------QEPSAAHRSMGYCPQsdaIFDLLTgREHLELFARLRgvpEAQVAQTalsgLVRLGL-PSYADRPAGTYSG 1953
Cdd:PRK15112 84 yrsqrirmifQDPSTSLNPRQRISQ---ILDFPL-RLNTDLEPEQR---EKQIIET----LRQVGLlPDHASYYPHMLAP 152
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 564358039 1954 GNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLL 1994
Cdd:PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLML 193
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
1785-2008 |
7.35e-07 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 54.41 E-value: 7.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1785 QPKSrLPPPLgeededvvRERERVTKGatQGDVLVLrdltkvyrgqrspavDHLCLGIPPGECFGLLGVNGAGKTSTFRM 1864
Cdd:PRK10636 304 APES-LPNPL--------LKMEKVSAG--YGDRIIL---------------DSIKLNLVPGSRIGLLGRNGAGKSTLIKL 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1865 VTGDTLPSSGEAVLaghnvaqepsAAHRSMGYCPQSDAIFdLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGlpSYA 1944
Cdd:PRK10636 358 LAGELAPVSGEIGL----------AKGIKLGYFAQHQLEF-LRADESPLQHLARLAPQELEQKLRDYLGGFGFQG--DKV 424
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564358039 1945 DRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVvrEGrSVVLTSH 2008
Cdd:PRK10636 425 TEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSH 485
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
1819-2012 |
9.54e-07 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 53.87 E-value: 9.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1819 VLRDLTKVYRGQrsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGD---------TL----PSSGEAV--LAGHnV 1883
Cdd:PRK10938 262 VLNNGVVSYNDR--PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDhpqgysndlTLfgrrRGSGETIwdIKKH-I 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1884 AQEPSAAHrsMGYCPQSDAIFDLLTGreHLELFARLRGVPEAQvAQTALSGLVRLGLPSY-ADRPAGTYSGGNKRKLATA 1962
Cdd:PRK10938 339 GYVSSSLH--LDYRVSTSVRNVILSG--FFDSIGIYQAVSDRQ-QKLAQQWLDILGIDKRtADAPFHSLSWGQQRLALIV 413
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 564358039 1963 LALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVL-TSHSMEE 2012
Cdd:PRK10938 414 RALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLfVSHHAED 464
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
831-1014 |
9.55e-07 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 54.02 E-value: 9.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 831 EGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHD---------VQTNMAAI---RPHLGICPQYNVLFDMLTVEE 898
Cdd:PRK09700 288 RGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDisprspldaVKKGMAYItesRRDNGFFPNFSIAQNMAISRS 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 899 hvWFYGRLKGV--------SAAAIDSEQEHLIRDVGLIPKRDTQtrhLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDP 970
Cdd:PRK09700 368 --LKDGGYKGAmglfhevdEQRTAENQRELLALKCHSVNQNITE---LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDV 442
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 564358039 971 ASRRGIWELLLKY-REGRTLILSTHHLDEAELLGDRVAMVASGSL 1014
Cdd:PRK09700 443 GAKAEIYKVMRQLaDDGKVILMVSSELPEIITVCDRIAVFCEGRL 487
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
1820-1986 |
1.09e-06 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 53.11 E-value: 1.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1820 LRDLTKVYRGqrSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAaHRSMGYCPQ 1899
Cdd:PRK11000 6 LRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA-ERGVGMVFQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1900 SDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTT 1979
Cdd:PRK11000 83 SYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 162
|
....*..
gi 564358039 1980 GMDPSAR 1986
Cdd:PRK11000 163 NLDAALR 169
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
1833-2027 |
1.25e-06 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 52.01 E-value: 1.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1833 PAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGdTLP-----SSGEAVLAGhnVAQEPSAAH----RSMGYCPQSdAI 1903
Cdd:PRK10418 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALG-ILPagvrqTAGRVLLDG--KPVAPCALRgrkiATIMQNPRS-AF 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1904 FDLLTGREHLELFARLRGVPEAqvAQTALSGLVRLGLPSyADRPAGTY----SGGNKRKLATALALVGDPAVVFLDEPTT 1979
Cdd:PRK10418 93 NPLHTMHTHARETCLALGKPAD--DATLTAALEAVGLEN-AARVLKLYpfemSGGMLQRMMIALALLCEAPFIIADEPTT 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 564358039 1980 GMDPSAR-RFLwNNLLSVVRE-GRSVVLTSHSMEECEALCTRLAIMVNGR 2027
Cdd:PRK10418 170 DLDVVAQaRIL-DLLESIVQKrALGMLLVTHDMGVVARLADDVAVMSHGR 218
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
787-1020 |
1.35e-06 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 53.83 E-value: 1.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 787 PQDPKVLVE--EPPPGLVPGVSIRGLKKHFRGSPQ--PALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGS 862
Cdd:PLN03232 1213 PSEATAIIEnnRPVSGWPSRGSIKFEDVHLRYRPGlpPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGR 1292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 863 ASILGHDV-QTNMAAIRPHLGICPQYNVLFdmltveehvwfygrlKGVSAAAIDSEQEH------------LIRDV---- 925
Cdd:PLN03232 1293 IMIDDCDVaKFGLTDLRRVLSIIPQSPVLF---------------SGTVRFNIDPFSEHndadlwealeraHIKDVidrn 1357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 926 --GLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELLLKYREGRTLILSTHHLDEAeLLG 1003
Cdd:PLN03232 1358 pfGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTI-IDC 1436
|
250
....*....|....*..
gi 564358039 1004 DRVAMVASGSLCCCGSP 1020
Cdd:PLN03232 1437 DKILVLSSGQVLEYDSP 1453
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
1820-2008 |
1.45e-06 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 53.57 E-value: 1.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1820 LRDLTKVYRGQRsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAHRSMGYCPQ 1899
Cdd:PRK10790 343 IDNVSFAYRDDN-LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQ 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1900 ------SDAIFDLLT-GREhlelfarlrgVPEAQVAQT----ALSGLVRlGLPSYADRPAG----TYSGGNKRKLATALA 1964
Cdd:PRK10790 422 qdpvvlADTFLANVTlGRD----------ISEEQVWQAletvQLAELAR-SLPDGLYTPLGeqgnNLSVGQKQLLALARV 490
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 564358039 1965 LVGDPAVVFLDEPTTGMDPSARRFLwNNLLSVVREGRSVVLTSH 2008
Cdd:PRK10790 491 LVQTPQILILDEATANIDSGTEQAI-QQALAAVREHTTLVVIAH 533
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
1845-1992 |
2.13e-06 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 51.25 E-value: 2.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1845 GECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAqepsaahrsmgYCPQSdaIFDLLTGREHLELFARLRGVPE 1924
Cdd:cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS-----------YKPQY--IKADYEGTVRDLLSSITKDFYT 91
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564358039 1925 AQVAQTALsgLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSAR--------RFLWNN 1992
Cdd:cd03237 92 HPYFKTEI--AKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRlmaskvirRFAENN 165
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
816-996 |
2.16e-06 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 50.79 E-value: 2.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 816 GSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSG-----SASILGHDVQTNMAAIRPHLGICPQYNVL 890
Cdd:cd03290 11 GSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGkvhwsNKNESEPSFEATRSRNRYSVAYAAQKPWL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 891 FDMlTVEEHVWFYG-----RLKGVSAAAidseqeHLIRDVGLIPKRDtQTR------HLSGGMQRKLSVAIAFVGGSRVV 959
Cdd:cd03290 91 LNA-TVEENITFGSpfnkqRYKAVTDAC------SLQPDIDLLPFGD-QTEigergiNLSGGQRQRICVARALYQNTNIV 162
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 564358039 960 IMDEPTAGV-----DPASRRGIWELLLKyrEGRTLILSTHHL 996
Cdd:cd03290 163 FLDDPFSALdihlsDHLMQEGILKFLQD--DKRTLVLVTHKL 202
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
822-1002 |
2.27e-06 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 49.67 E-value: 2.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 822 LRGLNLDFYEGHITAFLGHNGAGKTTTL-SILSGLFppssgsasilghdvqTNMAAIRPHLGICPQYNVLFDMLTveehv 900
Cdd:cd03227 11 FVPNDVTFGEGSLTIITGPNGSGKSTILdAIGLALG---------------GAQSATRRRSGVKAGCIVAAVSAE----- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 901 wFYGRLKGvsaaaidseqehlirdvglipkrdtqtrhLSGGMQRKLSVAIAF----VGGSRVVIMDEPTAGVDPASRRGI 976
Cdd:cd03227 71 -LIFTRLQ-----------------------------LSGGEKELSALALILalasLKPRPLYILDEIDRGLDPRDGQAL 120
|
170 180
....*....|....*....|....*..
gi 564358039 977 WELLLKYR-EGRTLILSTHHLDEAELL 1002
Cdd:cd03227 121 AEAILEHLvKGAQVIVITHLPELAELA 147
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
1933-2011 |
3.94e-06 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 51.24 E-value: 3.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1933 SGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGD---PAVVFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVLTSHS 2009
Cdd:pfam13304 219 RGLILLENGGGGELPAFELSDGTKRLLALLAALLSAlpkGGLLLIDEPESGLHPKLLRRLLELLKELSRNGAQLILTTHS 298
|
..
gi 564358039 2010 ME 2011
Cdd:pfam13304 299 PL 300
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
834-1014 |
4.71e-06 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 51.03 E-value: 4.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 834 ITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGH-----DVQTNMAAIRPHLGICPQYNVLFDMLTVEehvwfyGRLK- 907
Cdd:PRK11144 26 ITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRvlfdaEKGICLPPEKRRIGYVFQDARLFPHYKVR------GNLRy 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 908 GVSAaaidSEQEHLIRDVGLIPKRDTQTRH---LSGG-MQRklsVAI--AFVGGSRVVIMDEPTAGVD-PASRRgiwelL 980
Cdd:PRK11144 100 GMAK----SMVAQFDKIVALLGIEPLLDRYpgsLSGGeKQR---VAIgrALLTAPELLLMDEPLASLDlPRKRE-----L 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 564358039 981 LKY-----REGRTLIL-STHHLDEAELLGDRVA------MVASGSL 1014
Cdd:PRK11144 168 LPYlerlaREINIPILyVSHSLDEILRLADRVVvleqgkVKAFGPL 213
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
804-1009 |
4.97e-06 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 51.00 E-value: 4.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 804 GVSIRGLKKHFRGsPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQT------NMA-- 875
Cdd:PRK11650 3 GLKLQAVRKSYDG-KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNElepadrDIAmv 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 876 ----AIRPHlgicpqynvlfdmLTVEEHVwFYG-RLKGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGmQRKlSVAI 950
Cdd:PRK11650 82 fqnyALYPH-------------MSVRENM-AYGlKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGG-QRQ-RVAM 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564358039 951 --AFVGGSRVVIMDEPTAGVDPASR---RgiWELL-LKYREGRTLILSTHHLDEAELLGDRVaMV 1009
Cdd:PRK11650 146 grAIVREPAVFLFDEPLSNLDAKLRvqmR--LEIQrLHRRLKTTSLYVTHDQVEAMTLADRV-VV 207
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
1842-2041 |
5.78e-06 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 52.03 E-value: 5.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1842 IPPGECFGLLGVNGAGKTSTFRMVTGDT----LPSSGEAVLAGHNVAQEPSAAHRSMGYCPQSDAIFDLLTGREHLELFA 1917
Cdd:TIGR00956 84 IKPGELTVVLGRPGSGCSTLLKTIASNTdgfhIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAA 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1918 RLRGVpeaqvaQTALSGLVRLglpSYADRPAGTY----------------------SGGNKRKLATALALVGDPAVVFLD 1975
Cdd:TIGR00956 164 RCKTP------QNRPDGVSRE---EYAKHIADVYmatyglshtrntkvgndfvrgvSGGERKRVSIAEASLGGAKIQCWD 234
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564358039 1976 EPTTGMDPS-ARRFLwNNLLSVVREGRSVVLTS--HSMEECEALCTRLAIMVNGRFRCLGSAQHLKSRF 2041
Cdd:TIGR00956 235 NATRGLDSAtALEFI-RALKTSANILDTTPLVAiyQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYF 302
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
1838-2008 |
5.97e-06 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 49.93 E-value: 5.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1838 LCLGIPPGECFGLLGVNGAGKTSTFRMVTGdTLPSSGEAVLAGHNVAQEPSA--AHRSMGYCPQSDAIFdLLTGREHLEL 1915
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAG-LLPGSGSIQFAGQPLEAWSAAelARHRAYLSQQQTPPF-AMPVFQYLTL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1916 FaRLRGVPEAQVaQTALSGLV-RLGLPSYADRPAGTYSGG--NKRKLATALALVgDPAV------VFLDEPTTGMDPSAR 1986
Cdd:PRK03695 93 H-QPDKTRTEAV-ASALNEVAeALGLDDKLGRSVNQLSGGewQRVRLAAVVLQV-WPDInpagqlLLLDEPMNSLDVAQQ 169
|
170 180
....*....|....*....|..
gi 564358039 1987 RFLWNNLLSVVREGRSVVLTSH 2008
Cdd:PRK03695 170 AALDRLLSELCQQGIAVVMSSH 191
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
821-1014 |
6.01e-06 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 51.39 E-value: 6.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 821 ALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQT----NMAAIR---------PHLGICPQY 887
Cdd:PRK10261 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTlspgKLQALRrdiqfifqdPYASLDPRQ 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 888 NVLFDMLtveEHVWFYGRLKGVSAAAIDSEqehLIRDVGLIPKRDTQTRH-LSGGMQRKLSVAIAFVGGSRVVIMDEPTA 966
Cdd:PRK10261 419 TVGDSIM---EPLRVHGLLPGKAAAARVAW---LLERVGLLPEHAWRYPHeFSGGQRQRICIARALALNPKVIIADEAVS 492
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 564358039 967 GVDPASRRGIWELLLKYRE--GRTLILSTHHLDEAELLGDRVAMVASGSL 1014
Cdd:PRK10261 493 ALDVSIRGQIINLLLDLQRdfGIAYLFISHDMAVVERISHRVAVMYLGQI 542
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
817-998 |
6.05e-06 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 51.38 E-value: 6.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 817 SPQ--PALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGlFPPSSGSASILGHDV-QTNMAAIRPHLGICPQYNVLFDM 893
Cdd:PRK11174 359 SPDgkTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG-FLPYQGSLKINGIELrELDPESWRKHLSWVGQNPQLPHG 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 894 lTVEEHVwfygrLKGVSAAAiDSEQEHLIRDVGL---IPKR----DT----QTRHLSGGMQRKLSVAIAFVGGSRVVIMD 962
Cdd:PRK11174 438 -TLRDNV-----LLGNPDAS-DEQLQQALENAWVsefLPLLpqglDTpigdQAAGLSVGQAQRLALARALLQPCQLLLLD 510
|
170 180 190
....*....|....*....|....*....|....*.
gi 564358039 963 EPTAGVDPASRRGIWELLLKYREGRTLILSTHHLDE 998
Cdd:PRK11174 511 EPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLED 546
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
822-1026 |
6.80e-06 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 49.73 E-value: 6.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 822 LRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSasiLGHDVQTNMAAIRPHLGICPQYNvlfdmLTVEEhvw 901
Cdd:PRK09544 20 LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGV---IKRNGKLRIGYVPQKLYLDTTLP-----LTVNR--- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 902 fYGRLK-GVSAAAI-----DSEQEHLIrdvglipkrDTQTRHLSGG-MQRKLsVAIAFVGGSRVVIMDEPTAGVDPASRR 974
Cdd:PRK09544 89 -FLRLRpGTKKEDIlpalkRVQAGHLI---------DAPMQKLSGGeTQRVL-LARALLNRPQLLVLDEPTQGVDVNGQV 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 564358039 975 GIWELLLKYRE--GRTLILSTHHLDEAELLGDRVaMVASGSLCCCGSPLFLRRH 1026
Cdd:PRK09544 158 ALYDLIDQLRRelDCAVLMVSHDLHLVMAKTDEV-LCLNHHICCSGTPEVVSLH 210
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
1841-2008 |
6.89e-06 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 51.35 E-value: 6.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1841 GIP---PGECFGLLGVNGAGKTSTFRMVTGDTLPSSGeavlaghNVAQEPSAahrsmgycpqsDAIFDLLTGREHLELFA 1917
Cdd:PRK13409 92 GLPipkEGKVTGILGPNGIGKTTAVKILSGELIPNLG-------DYEEEPSW-----------DEVLKRFRGTELQNYFK 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1918 RLRGvPEAQVAQT---------ALSGLVR------------------LGLPSYADRPAGTYSGGNKRKLATALALVGDPA 1970
Cdd:PRK13409 154 KLYN-GEIKVVHKpqyvdlipkVFKGKVRellkkvdergkldevverLGLENILDRDISELSGGELQRVAIAAALLRDAD 232
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 564358039 1971 VVFLDEPTTGMDPSARrflwnnlLSVVR------EGRSVVLTSH 2008
Cdd:PRK13409 233 FYFFDEPTSYLDIRQR-------LNVARlirelaEGKYVLVVEH 269
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
832-1002 |
6.96e-06 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 51.65 E-value: 6.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 832 GHITAFLGHNGAGKTTTLSILSGLFPP---SSGSASILGHDVQTNMAAIrphLGICPQYNVLFDMLTVEEHVWFYGRL-- 906
Cdd:TIGR00956 789 GTLTALMGASGAGKTTLLNVLAERVTTgviTGGDRLVNGRPLDSSFQRS---IGYVQQQDLHLPTSTVRESLRFSAYLrq 865
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 907 -KGVSAAAIDSEQEHLIRDVGLIPKRDTQTRHLSGGM---QRK-LSVAIAFVGGSRVVI-MDEPTAGVDPASRRGIWELL 980
Cdd:TIGR00956 866 pKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLnveQRKrLTIGVELVAKPKLLLfLDEPTSGLDSQTAWSICKLM 945
|
170 180
....*....|....*....|..
gi 564358039 981 LKYREGRTLILSTHHLDEAELL 1002
Cdd:TIGR00956 946 RKLADHGQAILCTIHQPSAILF 967
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
1818-2059 |
6.99e-06 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 51.24 E-value: 6.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1818 LVLRDLTKVYR--GQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGdTLPS------SGEAVLAGHNVAQEPSA 1889
Cdd:PRK15134 6 LAIENLSVAFRqqQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILR-LLPSppvvypSGDIRFHGESLLHASEQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1890 AHR-------SMGYCPQSDAIFDLLTGREHL-ELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAG---TYSGGNKRK 1958
Cdd:PRK15134 85 TLRgvrgnkiAMIFQEPMVSLNPLHTLEKQLyEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDyphQLSGGERQR 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1959 LATALALVGDPAVVFLDEPTTGMDPSARRflwnNLLSVVRE-----GRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGS 2033
Cdd:PRK15134 165 VMIAMALLTRPELLIADEPTTALDVSVQA----QILQLLRElqqelNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNR 240
|
250 260 270
....*....|....*....|....*....|
gi 564358039 2034 AQHLKSRfgAGHTLTLRV----PPDQPEPA 2059
Cdd:PRK15134 241 AATLFSA--PTHPYTQKLlnsePSGDPVPL 268
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
936-994 |
7.34e-06 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 50.08 E-value: 7.34e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564358039 936 RHLSGGMQRKLSVAIAF---VGGSRVVIMDEPTAGVDPASRRGIWELLLKYREGRT-LILSTH 994
Cdd:pfam13304 235 FELSDGTKRLLALLAALlsaLPKGGLLLIDEPESGLHPKLLRRLLELLKELSRNGAqLILTTH 297
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
1817-1982 |
8.04e-06 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 50.89 E-value: 8.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTKVYRGQRsPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTG-DTlPSSGEAVLA-GHNV---AQEP---- 1887
Cdd:PRK11819 6 IYTMNRVSKVVPPKK-QILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGvDK-EFEGEARPApGIKVgylPQEPqldp 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1888 ----------------SAAHR----SMGYCpQSDAIFDLLtgrehLELFARLRGVPEAQVAQTALSGLVR----LGLPSy 1943
Cdd:PRK11819 84 ektvrenveegvaevkAALDRfneiYAAYA-EPDADFDAL-----AAEQGELQEIIDAADAWDLDSQLEIamdaLRCPP- 156
|
170 180 190
....*....|....*....|....*....|....*....
gi 564358039 1944 ADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMD 1982
Cdd:PRK11819 157 WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 195
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
790-1009 |
8.39e-06 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 50.84 E-value: 8.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 790 PKVLVEEPPPGLVPGVSIRGLKKHF---RG------SPQPALRGLNLDFYEGHITAFLGHNGAGKTTT-LSILsGLFPpS 859
Cdd:COG4172 261 PRGDPRPVPPDAPPLLEARDLKVWFpikRGlfrrtvGHVKAVDGVSLTLRRGETLGLVGESGSGKSTLgLALL-RLIP-S 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 860 SGSASILGHDVQT----NMAAIRPHLGICPQ--YNVLFDMLTVEE------HVWFygrlKGVSAAAIDSEQEHLIRDVGL 927
Cdd:COG4172 339 EGEIRFDGQDLDGlsrrALRPLRRRMQVVFQdpFGSLSPRMTVGQiiaeglRVHG----PGLSAAERRARVAEALEEVGL 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 928 ipkrDTQTRH-----LSGGmQR-KLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELL--LKYREGRTLILSTHHLDEA 999
Cdd:COG4172 415 ----DPAARHrypheFSGG-QRqRIAIARALILEPKLLVLDEPTSALDVSVQAQILDLLrdLQREHGLAYLFISHDLAVV 489
|
250
....*....|
gi 564358039 1000 ELLGDRVaMV 1009
Cdd:COG4172 490 RALAHRV-MV 498
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
813-998 |
9.48e-06 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 48.94 E-value: 9.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 813 HFRGSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQT-NMAAIRPHLGICPQYNVLF 891
Cdd:PRK10247 14 GYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTlKPEIYRQQVSYCAQTPTLF 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 892 DMlTVEEHVWFYGRLKGvsaaaIDSEQEHLIRDV---GLiPKRDTQTR--HLSGGMQRKLSVA--IAFVggSRVVIMDEP 964
Cdd:PRK10247 94 GD-TVYDNLIFPWQIRN-----QQPDPAIFLDDLerfAL-PDTILTKNiaELSGGEKQRISLIrnLQFM--PKVLLLDEI 164
|
170 180 190
....*....|....*....|....*....|....*.
gi 564358039 965 TAGVDPASRRGIWELLLKY-REGRTLIL-STHHLDE 998
Cdd:PRK10247 165 TSALDESNKHNVNEIIHRYvREQNIAVLwVTHDKDE 200
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
812-1012 |
9.61e-06 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 50.50 E-value: 9.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 812 KHFRGSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDVQTNMA--AI----------RP 879
Cdd:PRK10982 254 RNLTSLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNAneAInhgfalvteeRR 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 880 HLGICPQYNVLFDML--TVEEHVWFYGRLkgvSAAAIDSEQEHLIRDVGL-IPKRDTQTRHLSGGMQRKLSVAIAFVGGS 956
Cdd:PRK10982 334 STGIYAYLDIGFNSLisNIRNYKNKVGLL---DNSRMKSDTQWVIDSMRVkTPGHRTQIGSLSGGNQQKVIIGRWLLTQP 410
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 564358039 957 RVVIMDEPTAGVDPASRRGIWELLLKY-REGRTLILSTHHLdeAELLG--DRVAMVASG 1012
Cdd:PRK10982 411 EILMLDEPTRGIDVGAKFEIYQLIAELaKKDKGIIIISSEM--PELLGitDRILVMSNG 467
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
787-969 |
1.09e-05 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 50.89 E-value: 1.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 787 PQDPKVLVEE--PPPGLVPGVSIRGLKKHFRGSPQ--PALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGS 862
Cdd:PLN03130 1216 PSEAPLVIENnrPPPGWPSSGSIKFEDVVLRYRPElpPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGR 1295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 863 ASILGHDVQT-NMAAIRPHLGICPQYNVL------FDMLTVEEH----VWfygrlkgvsaAAIdsEQEHLiRDV------ 925
Cdd:PLN03130 1296 ILIDGCDISKfGLMDLRKVLGIIPQAPVLfsgtvrFNLDPFNEHndadLW----------ESL--ERAHL-KDVirrnsl 1362
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 564358039 926 GLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVD 969
Cdd:PLN03130 1363 GLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVD 1406
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
832-972 |
1.26e-05 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 50.88 E-value: 1.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 832 GHITAFLGHNGAGKTTTLSILS----GLFPPSSGSASILGHDVQTNMAAIRPHLGICPQYNVLFDMLTVEEHVWFYGRLK 907
Cdd:TIGR00956 87 GELTVVLGRPGSGCSTLLKTIAsntdGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCK 166
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564358039 908 GVSAAAID-SEQEHL--IRDV-----GLIPKRDTQT-----RHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPAS 972
Cdd:TIGR00956 167 TPQNRPDGvSREEYAkhIADVymatyGLSHTRNTKVgndfvRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSAT 244
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
1817-2012 |
1.26e-05 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 49.01 E-value: 1.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1817 VLVLRDLTkVYRGQrSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMV--TGDTLPS---SGEAVLAGHNVAQ---EPS 1888
Cdd:PRK14243 10 VLRTENLN-VYYGS-FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFnrLNDLIPGfrvEGKVTFHGKNLYApdvDPV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1889 AAHRSMGYC-----PQSDAIFDlltgreHLELFARLRG-------VPEAQVAQTALSGLVRLGLpsyadRPAG-TYSGGN 1955
Cdd:PRK14243 88 EVRRRIGMVfqkpnPFPKSIYD------NIAYGARINGykgdmdeLVERSLRQAALWDEVKDKL-----KQSGlSLSGGQ 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 564358039 1956 KRKLATALALVGDPAVVFLDEPTTGMDP-SARRFlwNNLLSVVREGRSVVLTSHSMEE 2012
Cdd:PRK14243 157 QQRLCIARAIAVQPEVILMDEPCSALDPiSTLRI--EELMHELKEQYTIIIVTHNMQQ 212
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
1945-2028 |
1.40e-05 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 50.17 E-value: 1.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1945 DRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSMEECEALCTRLAIMV 2024
Cdd:NF040905 399 FQKVGNLSGGNQQKVVLSKWLFTDPDVLILDEPTRGIDVGAKYEIYTIINELAAEGKGVIVISSELPELLGMCDRIYVMN 478
|
....
gi 564358039 2025 NGRF 2028
Cdd:NF040905 479 EGRI 482
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
1842-2007 |
1.42e-05 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 50.61 E-value: 1.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1842 IPPGECFGLLGVNGAGKTSTFRMVTGDTLPS---SGEAVLAGHN----VAQEPSAahrsmgYCPQSDAIFDLLTGREHLE 1914
Cdd:PLN03140 188 IKPSRMTLLLGPPSSGKTTLLLALAGKLDPSlkvSGEITYNGYRlnefVPRKTSA------YISQNDVHVGVMTVKETLD 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1915 LFARLRGV--------------------PEAQV--------AQTALSGLVR------LGLPSYADRPAGT-----YSGGN 1955
Cdd:PLN03140 262 FSARCQGVgtrydllselarrekdagifPEAEVdlfmkataMEGVKSSLITdytlkiLGLDICKDTIVGDemirgISGGQ 341
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 564358039 1956 KRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVLTS 2007
Cdd:PLN03140 342 KKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMS 393
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
813-1013 |
1.80e-05 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 48.70 E-value: 1.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 813 HFRGSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGhdvqtnmaairpHLGICPQY----- 887
Cdd:cd03291 44 NLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------RISFSSQFswimp 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 888 -----NVLFDmLTVEEHvwfygRLKGVSAAAidseqeHLIRDVGLIPKRDTQTR-----HLSGGMQRKLSVAIAFVGGSR 957
Cdd:cd03291 112 gtikeNIIFG-VSYDEY-----RYKSVVKAC------QLEEDITKFPEKDNTVLgeggiTLSGGQRARISLARAVYKDAD 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 958 VVIMDEPTAGVDPASRRGIWE-LLLKYREGRTLILST---HHLDEAellgDRVAMVASGS 1013
Cdd:cd03291 180 LYLLDSPFGYLDVFTEKEIFEsCVCKLMANKTRILVTskmEHLKKA----DKILILHEGS 235
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
1796-2043 |
1.82e-05 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 50.33 E-value: 1.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1796 EEDEDVVRERERVTKGatQGDVLVLRDLTKVYRGQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGE 1875
Cdd:TIGR00957 617 EELEPDSIERRTIKPG--EGNSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 694
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1876 AVLAGhnvaqepsaahrSMGYCPQSDAIFDLlTGREHLeLFARLRGVPEAQVAQTALSGLVRLGLPSYADR-----PAGT 1950
Cdd:TIGR00957 695 VHMKG------------SVAYVPQQAWIQND-SLRENI-LFGKALNEKYYQQVLEACALLPDLEILPSGDRteigeKGVN 760
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1951 YSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSV--VREGRSVVLTSHSMEECEALcTRLAIMVNGRF 2028
Cdd:TIGR00957 761 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPegVLKNKTRILVTHGISYLPQV-DVIIVMSGGKI 839
|
250
....*....|....*
gi 564358039 2029 RCLGSAQHLKSRFGA 2043
Cdd:TIGR00957 840 SEMGSYQELLQRDGA 854
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
810-996 |
2.19e-05 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 48.97 E-value: 2.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 810 LKKHF--RGSPQPALRGLNLDFYEGHITAFLGHNGAGKT-TTLSILSGLFPPSSGSASIL---GHDVQT----------- 872
Cdd:PRK11022 9 LSVHFgdESAPFRAVDRISYSVKQGEVVGIVGESGSGKSvSSLAIMGLIDYPGRVMAEKLefnGQDLQRisekerrnlvg 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 873 -NMAAI--RPHLGICPQYNVLFD-MLTVEEHVWfyGRLKGVSAAAIDseqehLIRDVGlIP----KRDTQTRHLSGGMQR 944
Cdd:PRK11022 89 aEVAMIfqDPMTSLNPCYTVGFQiMEAIKVHQG--GNKKTRRQRAID-----LLNQVG-IPdpasRLDVYPHQLSGGMSQ 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 564358039 945 KLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELL--LKYREGRTLILSTHHL 996
Cdd:PRK11022 161 RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLleLQQKENMALVLITHDL 214
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
820-1087 |
2.48e-05 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 49.91 E-value: 2.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 820 PALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGhdvqtnmaairpHLGICPQY----------NV 889
Cdd:TIGR01271 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------------RISFSPQTswimpgtikdNI 507
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 890 LFDmLTVEEHvwfygRLKGVSAAAidseqeHLIRDVGLIPKRDTQTR-----HLSGGMQRKLSVAIAFVGGSRVVIMDEP 964
Cdd:TIGR01271 508 IFG-LSYDEY-----RYTSVIKAC------QLEEDIALFPEKDKTVLgeggiTLSGGQRARISLARAVYKDADLYLLDSP 575
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 965 TAGVDPASRRGIWE-LLLKYREGRTLILST---HHLDEAellgDRVAMVASGSLCCCGS--------PLFLRRHLGCGYY 1032
Cdd:TIGR01271 576 FTHLDVVTEKEIFEsCLCKLMSNKTRILVTsklEHLKKA----DKILLLHEGVCYFYGTfselqakrPDFSSLLLGLEAF 651
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 564358039 1033 LTL-VKSSQSLVTHDLKGDTEDPRREKKSGSEGKtadtvltrdgpHRSSQAPAPDA 1087
Cdd:TIGR01271 652 DNFsAERRNSILTETLRRVSIDGDSTVFSGPETI-----------KQSFKQPPPEF 696
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
1796-1987 |
2.70e-05 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 49.25 E-value: 2.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1796 EEDEDVvRERERVtkgatQGDVLVlRDLTKVYRGQRSPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGE 1875
Cdd:PRK11176 327 EKDEGK-RVIERA-----KGDIEF-RNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGE 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1876 AVLAGHNVAQEPSAAHRSMgycpqsdaiFDLLTGREHL--------------ELFARLRGVPEAQVAQtALSGLVRL--G 1939
Cdd:PRK11176 400 ILLDGHDLRDYTLASLRNQ---------VALVSQNVHLfndtianniayartEQYSREQIEEAARMAY-AMDFINKMdnG 469
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 564358039 1940 LPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARR 1987
Cdd:PRK11176 470 LDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESER 517
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
1777-2037 |
2.96e-05 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 48.93 E-value: 2.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1777 QHR--NRLLPQPKSRLPPPLGEEDEDVVR-ERERVTKGATQGdvlVLRDLTkvyrGQRSpAVDHLCLGIPPGECFGLLGV 1853
Cdd:PRK15134 249 THPytQKLLNSEPSGDPVPLPEPASPLLDvEQLQVAFPIRKG---ILKRTV----DHNV-VVKNISFTLRPGETLGLVGE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1854 NGAGKTST----FRMvtgdtLPSSGEAVLAG---HN---------------VAQEPSAAHRsmgycPQSDAIFDLLTGRE 1911
Cdd:PRK15134 321 SGSGKSTTglalLRL-----INSQGEIWFDGqplHNlnrrqllpvrhriqvVFQDPNSSLN-----PRLNVLQIIEEGLR 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1912 --HLELFARLRgvpEAQVAQTalsgLVRLGL-PSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRF 1988
Cdd:PRK15134 391 vhQPTLSAAQR---EQQVIAV----MEEVGLdPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQ 463
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 564358039 1989 LWNNLLSVVREGR-SVVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHL 2037
Cdd:PRK15134 464 ILALLKSLQQKHQlAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERV 513
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
807-994 |
3.83e-05 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 48.46 E-value: 3.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 807 IRGLK-KHFRGspqpaLRGLNLDFyEGHITAFLGHNGAGKTTTLSILSGLFPPSSgSASILGHDVQTNMAAIRPHLGICP 885
Cdd:COG3593 3 LEKIKiKNFRS-----IKDLSIEL-SDDLTVLVGENNSGKSSILEALRLLLGPSS-SRKFDEEDFYLGDDPDLPEIEIEL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 886 QYNVLFDML-----------------------------TVEEHV--WFYGRLKGVSA--AAIDSEQEHLIRDVGLIPKRD 932
Cdd:COG3593 76 TFGSLLSRLlrlllkeedkeeleealeelneelkealkALNELLseYLKELLDGLDLelELSLDELEDLLKSLSLRIEDG 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564358039 933 TQTR--HLSGGMQRKLSVAIAFV-------GGSRVVIMDEPTAGVDPASRRGIWELLLKYREGRT-LILSTH 994
Cdd:COG3593 156 KELPldRLGSGFQRLILLALLSAlaelkraPANPILLIEEPEAHLHPQAQRRLLKLLKELSEKPNqVIITTH 227
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
1835-2027 |
3.88e-05 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 47.90 E-value: 3.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1835 VDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGD---TLPSSGEAVLAGHNVAQEPSAA------HRSMGYCPQSDAIFD 1905
Cdd:PRK13547 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDltgGGAPRGARVTGDVTLNGEPLAAidaprlARLRAVLPQAAQPAF 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1906 LLTGREHLEL----FARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSGGN--KRKLATALALV-------GDPAVV 1972
Cdd:PRK13547 97 AFSAREIVLLgrypHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGElaRVQFARVLAQLwpphdaaQPPRYL 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 564358039 1973 FLDEPTTGMDPSARRFLWNNLLSVVREGRSVVLT-SHSMEECEALCTRLAIMVNGR 2027
Cdd:PRK13547 177 LLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAiVHDPNLAARHADRIAMLADGA 232
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
839-995 |
1.06e-04 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 44.84 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 839 GHNGAGKTTTLSILSGLFPPSSGsasilghdvqtnmaairpHLGICPQYNVLFdmltVEEHVWFY-GRLkgvsaaaidse 917
Cdd:cd03223 34 GPSGTGKSSLFRALAGLWPWGSG------------------RIGMPEGEDLLF----LPQRPYLPlGTL----------- 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564358039 918 qehliRDVGLIPKRDTqtrhLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELLLKyrEGRTLILSTHH 995
Cdd:cd03223 81 -----REQLIYPWDDV----LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKE--LGITVISVGHR 147
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
1840-2027 |
1.17e-04 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 45.83 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1840 LGIPPGECFGLLGVNGAGKTSTFRMVTGDTL--PSSGEAVLAGHNVAQEPSA--AHRSMGYCPQSDA------IFDLLtg 1909
Cdd:COG0396 21 LTIKPGEVHAIMGPNGSGKSTLAKVLMGHPKyeVTSGSILLDGEDILELSPDerARAGIFLAFQYPVeipgvsVSNFL-- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1910 reHLELFARLRGVPEAQVAQTALSGLV-RLGL-PSYADRPA-GTYSGGNKRK--LATALALvgDPAVVFLDEPTTGMDPS 1984
Cdd:COG0396 99 --RTALNARRGEELSAREFLKLLKEKMkELGLdEDFLDRYVnEGFSGGEKKRneILQMLLL--EPKLAILDETDSGLDID 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 564358039 1985 ARRFLWNNLLSVVREGRSVVLTSHSmeecealcTRL---------AIMVNGR 2027
Cdd:COG0396 175 ALRIVAEGVNKLRSPDRGILIITHY--------QRIldyikpdfvHVLVDGR 218
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
803-1012 |
1.20e-04 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 47.01 E-value: 1.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 803 PGVSIRGLKKHFR--GSPQPALRGLNLDFYEGHITAFLGHNGAGKT-TTLSILSGL-FPPSS--------GSASILGHDV 870
Cdd:PRK15134 4 PLLAIENLSVAFRqqQTVRTVVNDVSLQIEAGETLALVGESGSGKSvTALSILRLLpSPPVVypsgdirfHGESLLHASE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 871 QT-------NMAAI--RPHLGICPQYNV---LFDMLTVEehvwfygrlKGVSAAAIDSEQEHLIRDVGL--IPKRDTQTR 936
Cdd:PRK15134 84 QTlrgvrgnKIAMIfqEPMVSLNPLHTLekqLYEVLSLH---------RGMRREAARGEILNCLDRVGIrqAAKRLTDYP 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564358039 937 H-LSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELL--LKYREGRTLILSTHHLDEAELLGDRVAMVASG 1012
Cdd:PRK15134 155 HqLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLreLQQELNMGLLFITHNLSIVRKLADRVAVMQNG 233
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
821-1015 |
1.36e-04 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 46.89 E-value: 1.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 821 ALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSASILGHDV-QTNMAAIRPHLGicpqynvlfdmlTVEEH 899
Cdd:PRK10522 338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVtAEQPEDYRKLFS------------AVFTD 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 900 VWFYGRLKG-----VSAAAIDSEQEHL--IRDVGLIPKRDTQTRhLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPAS 972
Cdd:PRK10522 406 FHLFDQLLGpegkpANPALVEKWLERLkmAHKLELEDGRISNLK-LSKGQKKRLALLLALAEERDILLLDEWAADQDPHF 484
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 564358039 973 RRGIWELLLKY-RE-GRTLILSTHHlDEAELLGDRVAMVASGSLC 1015
Cdd:PRK10522 485 RREFYQVLLPLlQEmGKTIFAISHD-DHYFIHADRLLEMRNGQLS 528
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
826-1014 |
1.37e-04 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 46.85 E-value: 1.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 826 NLDFY--EGHITAFLGHNGAGKTTTLSILSGLFP-PSSGSASILGHDVQTN--MAAIRPHL----------GICPQYNVL 890
Cdd:PRK13549 280 DVSFSlrRGEILGIAGLVGAGRTELVQCLFGAYPgRWEGEIFIDGKPVKIRnpQQAIAQGIamvpedrkrdGIVPVMGVG 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 891 FDM-LTVEEHVWFYGRL-KGVSAAAIDSEQEHL-IRdvglIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAG 967
Cdd:PRK13549 360 KNItLAALDRFTGGSRIdDAAELKTILESIQRLkVK----TASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRG 435
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 564358039 968 VDPASRRGIWELLLKY-REGRTLILSTHHLdeAELLG--DRVAMVASGSL 1014
Cdd:PRK13549 436 IDVGAKYEIYKLINQLvQQGVAIIVISSEL--PEVLGlsDRVLVMHEGKL 483
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
1838-2009 |
2.35e-04 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 44.48 E-value: 2.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1838 LCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNV--AQEPsaahrSMGYCPQSDAIFDLLTGREHLEL 1915
Cdd:PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNInnIAKP-----YCTYIGHNLGLKLEMTVFENLKF 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1916 FARLRgvpeaQVAQTALSGLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLS 1995
Cdd:PRK13541 94 WSEIY-----NSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVM 168
|
170
....*....|....
gi 564358039 1996 VVREGRSVVLTSHS 2009
Cdd:PRK13541 169 KANSGGIVLLSSHL 182
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
1813-1982 |
3.32e-04 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 43.94 E-value: 3.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1813 TQGDVLVlRDLTKVYRGQRSPAVDHLCLGIPPGECFGLLGVNGAGK----TSTFRMVTgdtlPSSGEAVLAGHNVAQEP- 1887
Cdd:cd03369 3 EHGEIEV-ENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKstliLALFRFLE----AEEGKIEIDGIDISTIPl 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1888 SAAHRSMGYCPQSDAIFDlLTGREHLELFARLRGVPEAQVAQTALSGLvrlglpsyadrpagTYSGGNKRKLATALALVG 1967
Cdd:cd03369 78 EDLRSSLTIIPQDPTLFS-GTIRSNLDPFDEYSDEEIYGALRVSEGGL--------------NLSQGQRQLLCLARALLK 142
|
170
....*....|....*
gi 564358039 1968 DPAVVFLDEPTTGMD 1982
Cdd:cd03369 143 RPRVLVLDEATASID 157
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
830-969 |
4.48e-04 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 45.18 E-value: 4.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 830 YEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSasilghdvqtnmaaIRPHLGIC--PQY-NVLFDMlTVEEHvwfygrL 906
Cdd:PRK13409 363 YEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGE--------------VDPELKISykPQYiKPDYDG-TVEDL------L 421
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564358039 907 KGVsAAAIDSE--QEHLIRDVGLIPKRDTQTRHLSGG-MQRklsVAIAfVGGSR---VVIMDEPTAGVD 969
Cdd:PRK13409 422 RSI-TDDLGSSyyKSEIIKPLQLERLLDKNVKDLSGGeLQR---VAIA-ACLSRdadLYLLDEPSAHLD 485
|
|
| NosY |
COG1277 |
ABC-type transport system involved in multi-copper enzyme maturation, permease component ... |
540-675 |
5.97e-04 |
|
ABC-type transport system involved in multi-copper enzyme maturation, permease component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440888 [Multi-domain] Cd Length: 201 Bit Score: 43.27 E-value: 5.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 540 FLRVLSRSLPLFLTLawiYSVALTVKAVVREKETRLRETMRAMGLSRAVLWLGWFLSCLGPFLVSAALLVLVLKLGNILP 619
Cdd:COG1277 49 LLASLFSLLSLLLPL---LAPALGMDAISGERESGTLELLLTLPISRWEIVLGKFLGALLVLLLALLITFLLALLLGLLL 125
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564358039 620 YSHP-------VVVFLFLAAFAVATVAQSFLLSAFFSRANLAAACGglayFALYLPYVLCVAW 675
Cdd:COG1277 126 FGSPppdlgaiLGFYLGLLLLGLAFLAIGLFISALTRNQIVAAILA----IALWLLLVILLAW 184
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
1804-1982 |
6.22e-04 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 45.35 E-value: 6.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1804 ERERVTKGATQGDVLVLRDLTKVYRGQRSPAVDHLCLGIPPGECFGLLGVNGAGKTST----FRMVTGDtlpsSGEAVLA 1879
Cdd:PLN03232 1221 ENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMlnalFRIVELE----KGRIMID 1296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1880 GHNVAQ-EPSAAHRSMGYCPQSDAIFDlLTGREHLELFARLR--GVPEAqVAQTALSGLVR---LGLPSYADRPAGTYSG 1953
Cdd:PLN03232 1297 DCDVAKfGLTDLRRVLSIIPQSPVLFS-GTVRFNIDPFSEHNdaDLWEA-LERAHIKDVIDrnpFGLDAEVSEGGENFSV 1374
|
170 180
....*....|....*....|....*....
gi 564358039 1954 GNKRKLATALALVGDPAVVFLDEPTTGMD 1982
Cdd:PLN03232 1375 GQRQLLSLARALLRRSKILVLDEATASVD 1403
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
1952-2012 |
6.50e-04 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 43.87 E-value: 6.50e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564358039 1952 SGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSV-VREGRSVVLTSHSMEE 2012
Cdd:PRK14258 152 SGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLrLRSELTMVIVSHNLHQ 213
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
790-1031 |
8.33e-04 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 44.94 E-value: 8.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 790 PKVLVEEPPPGLVPG---VSIRGLKKHFRGSPQPALRGLNLDFYEGHITAFLGHNGAGKTttlSILSGLF---PPSSGSA 863
Cdd:TIGR00957 1267 PWQIQETAPPSGWPPrgrVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKS---SLTLGLFrinESAEGEI 1343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 864 SILGHDV-QTNMAAIRPHLGICPQYNVLF--------DMLT--VEEHVWFygrlkgvsaaaiDSEQEHLIRDVGLIP-KR 931
Cdd:TIGR00957 1344 IIDGLNIaKIGLHDLRFKITIIPQDPVLFsgslrmnlDPFSqySDEEVWW------------ALELAHLKTFVSALPdKL 1411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 932 DTQT----RHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELLLKYREGRTLILSTHHLDEAeLLGDRVA 1007
Cdd:TIGR00957 1412 DHECaeggENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTI-MDYTRVI 1490
|
250 260
....*....|....*....|....
gi 564358039 1008 MVASGSLCCCGSPLFLRRHLGCGY 1031
Cdd:TIGR00957 1491 VLDKGEVAEFGAPSNLLQQRGIFY 1514
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
1833-2011 |
8.54e-04 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 43.09 E-value: 8.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1833 PAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAQEPSAAHR-----SMGYCPQSDAIFDLl 1907
Cdd:cd03290 15 ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRsrnrySVAYAAQKPWLLNA- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1908 TGREHLELFA-----RLRGVPEAQVAQTALSgLVRLGLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMD 1982
Cdd:cd03290 94 TVEENITFGSpfnkqRYKAVTDACSLQPDID-LLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALD 172
|
170 180 190
....*....|....*....|....*....|.
gi 564358039 1983 PS-ARRFLWNNLLSVVREG-RSVVLTSHSME 2011
Cdd:cd03290 173 IHlSDHLMQEGILKFLQDDkRTLVLVTHKLQ 203
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
1946-2010 |
8.84e-04 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 44.82 E-value: 8.84e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564358039 1946 RPAGTYSGGNKRKLATA---LALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSM 2010
Cdd:PRK00635 805 RPLSSLSGGEIQRLKLAyelLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNM 872
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
1903-2011 |
8.95e-04 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 43.37 E-value: 8.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1903 IFDLL--TGREHLELFARLRGVPEA-QVAQTALSGLVRLGlpsyadRPAGTYSGGNKR--KLATALAL-VGDPAVVFLDE 1976
Cdd:cd03271 125 IADVLdmTVEEALEFFENIPKIARKlQTLCDVGLGYIKLG------QPATTLSGGEAQriKLAKELSKrSTGKTLYILDE 198
|
90 100 110
....*....|....*....|....*....|....*
gi 564358039 1977 PTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSME 2011
Cdd:cd03271 199 PTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD 233
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
1832-2011 |
8.96e-04 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 44.52 E-value: 8.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1832 SPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHnvaqepsaahrsMGYCPQSDAIF------D 1905
Cdd:TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR------------ISFSPQTSWIMpgtikdN 506
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1906 LLTGREHLELfaRLRGVPEAQVAQTALSglvrlGLPSYADRPAG----TYSGGNKRKLATALALVGDPAVVFLDEPTTGM 1981
Cdd:TIGR01271 507 IIFGLSYDEY--RYTSVIKACQLEEDIA-----LFPEKDKTVLGeggiTLSGGQRARISLARAVYKDADLYLLDSPFTHL 579
|
170 180 190
....*....|....*....|....*....|
gi 564358039 1982 DPSARRFLWNNLLSVVREGRSVVLTSHSME 2011
Cdd:TIGR01271 580 DVVTEKEIFESCLCKLMSNKTRILVTSKLE 609
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
831-996 |
1.16e-03 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 44.00 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 831 EGHITAFLGHNGAGKTTTLSILSGLFPPSSGSAS-------IL----GHDVQTNMAA-----IRPhlGICPQYnvlFDML 894
Cdd:COG1245 98 KGKVTGILGPNGIGKSTALKILSGELKPNLGDYDeepswdeVLkrfrGTELQDYFKKlangeIKV--AHKPQY---VDLI 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 895 ------TVEEhvwfygRLKGV-SAAAIDseqeHLIRDVGLIPKRDTQTRHLSGG-MQRkLSVAIAFVGGSRVVIMDEPTA 966
Cdd:COG1245 173 pkvfkgTVRE------LLEKVdERGKLD----ELAEKLGLENILDRDISELSGGeLQR-VAIAAALLRDADFYFFDEPSS 241
|
170 180 190
....*....|....*....|....*....|....
gi 564358039 967 GVDPASR----RGIWELLlkyREGRTLILSTHHL 996
Cdd:COG1245 242 YLDIYQRlnvaRLIRELA---EEGKYVLVVEHDL 272
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
783-996 |
1.24e-03 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 43.93 E-value: 1.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 783 LAPAPQ-DPKVLVEEPPPGL-VPGVSI-----RGLKKHFRGsPQPALRGLNLDFYEGHITAFLGHNGAGKTTT-LSILSG 854
Cdd:PRK15134 257 LNSEPSgDPVPLPEPASPLLdVEQLQVafpirKGILKRTVD-HNVVVKNISFTLRPGETLGLVGESGSGKSTTgLALLRL 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 855 LfpPSSGSASILGHDVQT----NMAAIRPHLGICPQ--YNVLFDMLTVEEHVWFYGRL--KGVSAAAIDSEQEHLIRDVG 926
Cdd:PRK15134 336 I--NSQGEIWFDGQPLHNlnrrQLLPVRHRIQVVFQdpNSSLNPRLNVLQIIEEGLRVhqPTLSAAQREQQVIAVMEEVG 413
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564358039 927 LipkrDTQTRH-----LSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELLLKYREGRTL--ILSTHHL 996
Cdd:PRK15134 414 L----DPETRHrypaeFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLayLFISHDL 486
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
1832-2011 |
1.51e-03 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 42.92 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1832 SPAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHnvaqepsaahrsMGYCPQSDAIF------D 1905
Cdd:cd03291 50 APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR------------ISFSSQFSWIMpgtikeN 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1906 LLTGREHLELfaRLRGVPEAQVAQTALSglvrlGLPSYADRPAG----TYSGGNKRKLATALALVGDPAVVFLDEPTTGM 1981
Cdd:cd03291 118 IIFGVSYDEY--RYKSVVKACQLEEDIT-----KFPEKDNTVLGeggiTLSGGQRARISLARAVYKDADLYLLDSPFGYL 190
|
170 180 190
....*....|....*....|....*....|
gi 564358039 1982 DPSARRFLWNNLLSVVREGRSVVLTSHSME 2011
Cdd:cd03291 191 DVFTEKEIFESCVCKLMANKTRILVTSKME 220
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
831-996 |
1.78e-03 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 43.26 E-value: 1.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 831 EGHITAFLGHNGAGKTTTLSILSGLFPPSSGSAS-------IL----GHDVQTNMAA-----IRPHLGicPQYnvlFDML 894
Cdd:PRK13409 98 EGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEeepswdeVLkrfrGTELQNYFKKlyngeIKVVHK--PQY---VDLI 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 895 ------TVEEhvwfygRLKGVSAAAIDSEqehLIRDVGLIPKRDTQTRHLSGG-MQRklsVAIAFVgGSR---VVIMDEP 964
Cdd:PRK13409 173 pkvfkgKVRE------LLKKVDERGKLDE---VVERLGLENILDRDISELSGGeLQR---VAIAAA-LLRdadFYFFDEP 239
|
170 180 190
....*....|....*....|....*....|....*.
gi 564358039 965 TAGVDPASR----RGIWELLlkyrEGRTLILSTHHL 996
Cdd:PRK13409 240 TSYLDIRQRlnvaRLIRELA----EGKYVLVVEHDL 271
|
|
| DUF4162 |
pfam13732 |
Domain of unknown function (DUF4162); This domain is found at the C-terminus of bacterial ABC ... |
2032-2123 |
1.96e-03 |
|
Domain of unknown function (DUF4162); This domain is found at the C-terminus of bacterial ABC transporter proteins. The function is not known.
Pssm-ID: 463971 [Multi-domain] Cd Length: 82 Bit Score: 39.12 E-value: 1.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 2032 GSAQHLKSRFGaGHTLTLRVPPDQPEPAIafivttfPDAELREVHGSRLRFQLPpgGGCKLARVFRELAAQGKahgVEDF 2111
Cdd:pfam13732 1 GTLEEIKRSYG-RNRIEVETADAEELLEL-------PGVEEVEEEGGGLELKLE--DEEAANELLAALLSGGE---IRSF 67
|
90
....*....|..
gi 564358039 2112 SVSQTTLEEVFL 2123
Cdd:pfam13732 68 EEEEPSLNDIFI 79
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
1833-2010 |
2.02e-03 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 43.43 E-value: 2.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1833 PAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNVAqepsaahrsmgYCPQSDAIFDLlTGREH 1912
Cdd:PLN03232 631 PTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVA-----------YVPQVSWIFNA-TVREN 698
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1913 LeLFA------RLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTySGGNKRKLATALALVGDPAVVFLDEPTTGMDPSAR 1986
Cdd:PLN03232 699 I-LFGsdfeseRYWRAIDVTALQHDLDLLPGRDLTEIGERGVNI-SGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVA 776
|
170 180
....*....|....*....|....
gi 564358039 1987 RFLWNNLLSVVREGRSVVLTSHSM 2010
Cdd:PLN03232 777 HQVFDSCMKDELKGKTRVLVTNQL 800
|
|
| YadH |
COG0842 |
ABC-type multidrug transport system, permease component [Defense mechanisms]; |
550-747 |
2.17e-03 |
|
ABC-type multidrug transport system, permease component [Defense mechanisms];
Pssm-ID: 440604 [Multi-domain] Cd Length: 200 Bit Score: 41.72 E-value: 2.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 550 LFLTLAWIYSVALTVKAVVREKETRLRETMRAMGLSRAVLWLGWFLSCLGPFLVSAALLVL--VLKLGNILPYSHPVVVF 627
Cdd:COG0842 9 LLAMSLLFTALMLTALSIAREREQGTLERLLVTPVSRLEILLGKVLAYLLRGLLQALLVLLvaLLFFGVPLRGLSLLLLL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 628 LFLAAFAVATVAQSFLLSAFFSRANLAAACGGLAYFALYLpyvLCVAW--RERLPlGGLLAVSLLSPVAFGFgceslall 705
Cdd:COG0842 89 LVLLLFALAFSGLGLLISTLARSQEQASAISNLVILPLTF---LSGAFfpIESLP-GWLQAIAYLNPLTYFV-------- 156
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 564358039 706 eeqgDGAQWHNLGTGPAEDVfsLAQVSAFLLLDAVIYGLALW 747
Cdd:COG0842 157 ----EALRALFLGGAGLADV--WPSLLVLLAFAVVLLALALR 192
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
1815-2112 |
2.26e-03 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 42.92 E-value: 2.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1815 GDVLVLRDLTKVYR--GQRSPAVDHLCLGIPPGECFGLLGVNGAGKTST----FRMV--TGDTLpSSGEAVLAGHN---- 1882
Cdd:PRK10261 10 RDVLAVENLNIAFMqeQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTalalMRLLeqAGGLV-QCDKMLLRRRSrqvi 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1883 --------VAQEPSAAHRSMGYCPQSDAIFDLLTGREHLELFARLR---GVPEAQVAQTALSGLVRL-GLPSYADRPAGT 1950
Cdd:PRK10261 89 elseqsaaQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHqgaSREEAMVEAKRMLDQVRIpEAQTILSRYPHQ 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1951 YSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWnNLLSVVREGRS--VVLTSHSMEECEALCTRLAIMVNGRF 2028
Cdd:PRK10261 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQIL-QLIKVLQKEMSmgVIFITHDMGVVAEIADRVLVMYQGEA 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 2029 RCLGSAQHL---------------KSRFGA--GHTLTLRVP------PDQPEPAIAfIVTTFPDAELREVHGSRLRFQLP 2085
Cdd:PRK10261 248 VETGSVEQIfhapqhpytrallaaVPQLGAmkGLDYPRRFPlislehPAKQEPPIE-QDTVVDGEPILQVRNLVTRFPLR 326
|
330 340
....*....|....*....|....*..
gi 564358039 2086 PGggcKLARVFRELaaqgkaHGVEDFS 2112
Cdd:PRK10261 327 SG---LLNRVTREV------HAVEKVS 344
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
1940-2008 |
2.56e-03 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 43.09 E-value: 2.56e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564358039 1940 LPSYADRPAGTY----SGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVV-REGRSVVLTSH 2008
Cdd:PTZ00265 1344 LPNKYDTNVGPYgkslSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKdKADKTIITIAH 1417
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
1903-2010 |
6.38e-03 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 41.92 E-value: 6.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1903 IFDLL--TGREHLELFARLRGVpeAQVAQTALS---GLVRLGlpsyadRPAGTYSGGNKR--KLATAL-ALVGDPAVVFL 1974
Cdd:TIGR00630 785 IADVLdmTVEEAYEFFEAVPSI--SRKLQTLCDvglGYIRLG------QPATTLSGGEAQriKLAKELsKRSTGRTLYIL 856
|
90 100 110
....*....|....*....|....*....|....*.
gi 564358039 1975 DEPTTGMDPSARRFLWNNLLSVVREGRSVVLTSHSM 2010
Cdd:TIGR00630 857 DEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIEHNL 892
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
1815-2008 |
7.59e-03 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 40.66 E-value: 7.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1815 GDVLVLRDLTKVYRGQRSPAVDHLCLGIPPGECFGLLGVNGAGKTST----FRMVtgDTLpsSGEAVLAGHNVAQEPSAA 1890
Cdd:cd03288 17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLslafFRMV--DIF--DGKIVIDGIDISKLPLHT 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564358039 1891 HRSMGYCPQSDAIfdLLTGREHLELFARLRGVP----EA-QVAQtaLSGLVRL---GLPSYADRPAGTYSGGNKRKLATA 1962
Cdd:cd03288 93 LRSRLSIILQDPI--LFSGSIRFNLDPECKCTDdrlwEAlEIAQ--LKNMVKSlpgGLDAVVTEGGENFSVGQRQLFCLA 168
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 564358039 1963 LALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVREgRSVVLTSH 2008
Cdd:cd03288 169 RAFVRKSSILIMDEATASIDMATENILQKVVMTAFAD-RTVVTIAH 213
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
822-883 |
8.50e-03 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 40.40 E-value: 8.50e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564358039 822 LRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGlFPpssgSASILGHDVQTNMAAI-------RPHLGI 883
Cdd:CHL00131 23 LKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG-HP----AYKILEGDILFKGESIldlepeeRAHLGI 86
|
|
| |
