NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|564368639|ref|XP_006245099|]
View 

inducible T-cell costimulator isoform X1 [Rattus norvegicus]

Protein Classification

V-set_2 domain-containing protein( domain architecture ID 11239799)

V-set_2 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
V-set_2 pfam15910
ICOS V-set domain; This family contains divergent V-set ig domains found in the ICOS protein.
24-135 1.66e-62

ICOS V-set domain; This family contains divergent V-set ig domains found in the ICOS protein.


:

Pssm-ID: 464936  Cd Length: 112  Bit Score: 190.01  E-value: 1.66e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564368639   24 DLANHRMFSFHDGGVQISCNYPETVQQLKMQLFKDREVLCDLTKTKGSGNTVSIKNPMSCPYQLSNNSVSFFLDNADSSQ 103
Cdd:pfam15910   1 DSAKSEMFEFHNGGVQILCKYPETVQQFKMQLLKGREILCDLTKTKGSGNTVSIKNVTLCQSQLSNNSVSFFLYNLDSSH 80
                          90       100       110
                  ....*....|....*....|....*....|..
gi 564368639  104 GSYFLCSLSIFDPPPFQEKNLSGGYLLIYESQ 135
Cdd:pfam15910  81 ASYYFCCLSIFDPPPFIHCILSGEYLYIYESQ 112
 
Name Accession Description Interval E-value
V-set_2 pfam15910
ICOS V-set domain; This family contains divergent V-set ig domains found in the ICOS protein.
24-135 1.66e-62

ICOS V-set domain; This family contains divergent V-set ig domains found in the ICOS protein.


Pssm-ID: 464936  Cd Length: 112  Bit Score: 190.01  E-value: 1.66e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564368639   24 DLANHRMFSFHDGGVQISCNYPETVQQLKMQLFKDREVLCDLTKTKGSGNTVSIKNPMSCPYQLSNNSVSFFLDNADSSQ 103
Cdd:pfam15910   1 DSAKSEMFEFHNGGVQILCKYPETVQQFKMQLLKGREILCDLTKTKGSGNTVSIKNVTLCQSQLSNNSVSFFLYNLDSSH 80
                          90       100       110
                  ....*....|....*....|....*....|..
gi 564368639  104 GSYFLCSLSIFDPPPFQEKNLSGGYLLIYESQ 135
Cdd:pfam15910  81 ASYYFCCLSIFDPPPFIHCILSGEYLYIYESQ 112
IgV_CD28 cd20925
Immunoglobulin Variable (IgV) domain Cluster of Differentiation (CD) 28; The members here are ...
30-130 3.62e-04

Immunoglobulin Variable (IgV) domain Cluster of Differentiation (CD) 28; The members here are composed of the immunoglobulin variable region (IgV) of Cluster of Differentiation (CD) 28). CD28 is one of the proteins expressed on T cells that provide co-stimulatory signals required for T cell activation and survival. CD28 is the receptor for CD80 (B7.1) and CD86 (B7.2) proteins. CD28 consists of a paired V-set of immunoglobulin (Ig) superfamily domains attached to single-transmembrane domains and cytoplasmic domains that contain the MYPPY motif, which is involved in binding B7.1 or B7.2. CD28 is very similar to CTLA-4 (cytotoxic T-lymphocyte-associated protein 4, also known as CD152 (cluster of differentiation 152)), which is involved in the regulation of T cell response, acting as an inhibitor of intracellular signaling. CTLA-4 also binds the B7 molecules (B7.1 and B7.2) with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. The IgSF is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. The two sheets are linked together by a conserved disulfide bond between B strand and F strand. IgSF domains can be divided into 4 main classes based on their structures and sequences: the Variable (V), Constant 1 (C1), Constant 2 (C2), and Intermediate (I) sets. The N-terminal Ig-like domain of CD28 is a member of the V-set Ig domains, having A-B-E-D strands in one beta-sheet and A'-G-F-C-C'-C" in the other. However, each CD28-B7 family member is slightly different, some have an IgV domain which lacks an A' or C" strand.


Pssm-ID: 409519  Cd Length: 117  Bit Score: 38.77  E-value: 3.62e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564368639  30 MFSFHDGGVQISCNYPE--TVQQLKMQLFKDREVLCDLTKTKGSGNT---VSIKNPMSCPYQLSNNSVSFFLDNADSSQG 104
Cdd:cd20925    8 MLVVYNNAVNLSCKYTYnlFSKEFRASLHKGLDSAVEVCVVYGNYSQqlqVYSNTGFNCDGKLGNESVTFYLWNLYVNQT 87
                         90       100
                 ....*....|....*....|....*.
gi 564368639 105 SYFLCSLSIFDPPPFQEKNLSGGYLL 130
Cdd:cd20925   88 DIYFCKIEVMYPPPYLDNEKSNGTII 113
 
Name Accession Description Interval E-value
V-set_2 pfam15910
ICOS V-set domain; This family contains divergent V-set ig domains found in the ICOS protein.
24-135 1.66e-62

ICOS V-set domain; This family contains divergent V-set ig domains found in the ICOS protein.


Pssm-ID: 464936  Cd Length: 112  Bit Score: 190.01  E-value: 1.66e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564368639   24 DLANHRMFSFHDGGVQISCNYPETVQQLKMQLFKDREVLCDLTKTKGSGNTVSIKNPMSCPYQLSNNSVSFFLDNADSSQ 103
Cdd:pfam15910   1 DSAKSEMFEFHNGGVQILCKYPETVQQFKMQLLKGREILCDLTKTKGSGNTVSIKNVTLCQSQLSNNSVSFFLYNLDSSH 80
                          90       100       110
                  ....*....|....*....|....*....|..
gi 564368639  104 GSYFLCSLSIFDPPPFQEKNLSGGYLLIYESQ 135
Cdd:pfam15910  81 ASYYFCCLSIFDPPPFIHCILSGEYLYIYESQ 112
IgV_CD28 cd20925
Immunoglobulin Variable (IgV) domain Cluster of Differentiation (CD) 28; The members here are ...
30-130 3.62e-04

Immunoglobulin Variable (IgV) domain Cluster of Differentiation (CD) 28; The members here are composed of the immunoglobulin variable region (IgV) of Cluster of Differentiation (CD) 28). CD28 is one of the proteins expressed on T cells that provide co-stimulatory signals required for T cell activation and survival. CD28 is the receptor for CD80 (B7.1) and CD86 (B7.2) proteins. CD28 consists of a paired V-set of immunoglobulin (Ig) superfamily domains attached to single-transmembrane domains and cytoplasmic domains that contain the MYPPY motif, which is involved in binding B7.1 or B7.2. CD28 is very similar to CTLA-4 (cytotoxic T-lymphocyte-associated protein 4, also known as CD152 (cluster of differentiation 152)), which is involved in the regulation of T cell response, acting as an inhibitor of intracellular signaling. CTLA-4 also binds the B7 molecules (B7.1 and B7.2) with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. The IgSF is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. The two sheets are linked together by a conserved disulfide bond between B strand and F strand. IgSF domains can be divided into 4 main classes based on their structures and sequences: the Variable (V), Constant 1 (C1), Constant 2 (C2), and Intermediate (I) sets. The N-terminal Ig-like domain of CD28 is a member of the V-set Ig domains, having A-B-E-D strands in one beta-sheet and A'-G-F-C-C'-C" in the other. However, each CD28-B7 family member is slightly different, some have an IgV domain which lacks an A' or C" strand.


Pssm-ID: 409519  Cd Length: 117  Bit Score: 38.77  E-value: 3.62e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564368639  30 MFSFHDGGVQISCNYPE--TVQQLKMQLFKDREVLCDLTKTKGSGNT---VSIKNPMSCPYQLSNNSVSFFLDNADSSQG 104
Cdd:cd20925    8 MLVVYNNAVNLSCKYTYnlFSKEFRASLHKGLDSAVEVCVVYGNYSQqlqVYSNTGFNCDGKLGNESVTFYLWNLYVNQT 87
                         90       100
                 ....*....|....*....|....*.
gi 564368639 105 SYFLCSLSIFDPPPFQEKNLSGGYLL 130
Cdd:cd20925   88 DIYFCKIEVMYPPPYLDNEKSNGTII 113
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH