|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
200-1038 |
6.53e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 93.20 E-value: 6.53e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 200 QVADNRIQELQEEVHQLQEKLAQMEKGVQDYSRQIELRER------EIERLSVAVDGGRspdILSLETRNKTNEKLIAQL 273
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERykelkaELRELELALLVLR---LEELREELEELQEELKEA 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 274 NIQVDFLQQANKELERRIQELM-------ETKATVTTEVVNLSNRNEKLCQELTEIDQMAQQLERHKEQV---LETADRE 343
Cdd:TIGR02168 252 EEELEELTAELQELEEKLEELRlevseleEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELeaqLEELESK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 344 LGEAKKEIKRNLSEMRNLEEKMSKLQWELDVSNKEKERL-NGELLLKSDLETV---VHQLEQEKQRLNKKLQSFAVTERE 419
Cdd:TIGR02168 332 LDELAEELAELEEKLEELKEELESLEAELEELEAELEELeSRLEELEEQLETLrskVAQLELQIASLNNEIERLEARLER 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 420 LTLEVERMRLEHGIKRRDKSPSRLDTFLKGIEDErdyyKKELEKLQHliqrrscsviycarekppiikcsEKGDCNSDIH 499
Cdd:TIGR02168 412 LEDRRERLQQEIEELLKKLEEAELKELQAELEEL----EEELEELQE-----------------------ELERLEEALE 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 500 LITRERDELQRMLERFEKYMEDIQSNVKLLTAERDRLSVLYKEAKEELSALRQESTGSLAPNNLVSCiEKEKERALSdlr 579
Cdd:TIGR02168 465 ELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISV-DEGYEAAIE--- 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 580 ritaekEALREklkNIQELNVVGKSELEKTIEHLTyinhqlENEK-------YELQSKILIMKETIESLESKSKLQAQKL 652
Cdd:TIGR02168 541 ------AALGG---RLQAVVVENLNAAKKAIAFLK------QNELgrvtflpLDSIKGTEIQGNDREILKNIEGFLGVAK 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 653 SHVTGDSSHQKTeMNSL----RIVSeqlqrSLDDCQHRLSIKRGElesaqEQIKALEQKLESLSHRMTMQSEETHAmkkt 728
Cdd:TIGR02168 606 DLVKFDPKLRKA-LSYLlggvLVVD-----DLDNALELAKKLRPG-----YRIVTLDGDLVRPGGVITGGSAKTNS---- 670
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 729 iGVMDKEKDflqetVDEKTEKIASLQDSLISKEKAITQLKVTVSECESSLNQLQETLTNRDREINSLRRQLDATHKELDD 808
Cdd:TIGR02168 671 -SILERRRE-----IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ 744
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 809 VGKSREISYKENRRLQDDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENKDLLDRF----- 883
Cdd:TIGR02168 745 LEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAanlre 824
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 884 --QMLHNRAEDWEIKAQQAEGENSSVRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSQLEEELR 961
Cdd:TIGR02168 825 rlESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELR 904
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564383425 962 RHESEKATVLGDVSSLRELCIKLDSGKDIMTHQLNSKGLEL-ERAVAELENVKSESELLKKQLMTERQTINSLESLLA 1038
Cdd:TIGR02168 905 ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLsEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
195-934 |
4.93e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 90.12 E-value: 4.93e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 195 IADLLQVADNRIQELQEEVHQLQEKLAQMEKGVQDYSRQIELREREIERLSVavdggrspdilsletRNKTNEKLIAQLN 274
Cdd:TIGR02168 258 LTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRE---------------RLANLERQLEELE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 275 IQVDFLQQANKELERRIQELMETKATVTTEVVNLSNRNEKLCQELteidQMAQQLERHKEQVLETADRELGEAKKEIKRN 354
Cdd:TIGR02168 323 AQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL----EELESRLEELEEQLETLRSKVAQLELQIASL 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 355 LSEMRNLEEKMSKLQWELDVSNKEKERLNGELLlKSDLETVVHQLEQEKQRLNKKLQSFAVTEREL-TLEVERMRLEHGI 433
Cdd:TIGR02168 399 NNEIERLEARLERLEDRRERLQQEIEELLKKLE-EAELKELQAELEELEEELEELQEELERLEEALeELREELEEAEQAL 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 434 KRRDKSPSRLDTFLKGIEDERDYYKKELEKLQHLIQRRSCSVIYCAREKPpIIKCSEKGDCNSDIHLitreRDELQRML- 512
Cdd:TIGR02168 478 DAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSE-LISVDEGYEAAIEAAL----GGRLQAVVv 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 513 ERFEKYMEDIQ-----SNVKLLTAERDRLSVLYKEAKEELSALRQESTGSLApNNLVSC---IEKEKERALSDLRRITAE 584
Cdd:TIGR02168 553 ENLNAAKKAIAflkqnELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVA-KDLVKFdpkLRKALSYLLGGVLVVDDL 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 585 KEALREKLKNIQELNVV--------------GKS---------------ELEKTIEHLTYINHQLENEKYELQSKILIMK 635
Cdd:TIGR02168 632 DNALELAKKLRPGYRIVtldgdlvrpggvitGGSaktnssilerrreieELEEKIEELEEKIAELEKALAELRKELEELE 711
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 636 ETIESLESKSKLQAQKLSHVTGDSSHQKTEMNSLRIVSEQLQRSLDDCQHRLSIKRGELESAQEQIKALEQKLESLSHRM 715
Cdd:TIGR02168 712 EELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 716 TMQSEETHAMKKTIGVMDKEKDFLQETVDEKTEKIASLQDSLISKEKAITQLkvtvsecESSLNQLQETLTNRDREINSL 795
Cdd:TIGR02168 792 EQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDL-------EEQIEELSEDIESLAAEIEEL 864
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 796 RRQLDATHKELDDVGKSREISYKENRRLQDDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAakeke 875
Cdd:TIGR02168 865 EELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRID----- 939
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*....
gi 564383425 876 nkDLLDRFqmlhnrAEDWEIKAQQAEGENSsvrlellSIDTERRHLRERVELLEKEIQE 934
Cdd:TIGR02168 940 --NLQERL------SEEYSLTLEEAEALEN-------KIEDDEEEARRRLKRLENKIKE 983
|
|
| cc_Cep135_MBD |
cd22292 |
coiled-coil microtubule binding domain of centrosomal protein of 135 kDa (Cep135) and similar ... |
81-142 |
2.91e-17 |
|
coiled-coil microtubule binding domain of centrosomal protein of 135 kDa (Cep135) and similar proteins; Cep135, also called centrosomal protein 4, is involved in early centriole assembly, duplication, biogenesis, and formation. It is required for the recruitment of CEP295 to the proximal end of new-born centrioles at the centriolar microtubule wall during early S phase in a PLK4-dependent manner. This model corresponds to a conserved coiled-coil domain of Cep135, which is critical for microtubule binding.
Pssm-ID: 412088 [Multi-domain] Cd Length: 62 Bit Score: 76.84 E-value: 2.91e-17
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564383425 81 ENNELYLELMKLREYSDKHIKDLKITLKKSSRETADLKFLNNQYVHKVRLLEKESKAKDEKI 142
Cdd:cd22292 1 ENNELHLELIKLKEESDAKIKDLKSSLRKLEHENADLRFLNSQYLHKIKVLEKESKAKSEKI 62
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
199-1022 |
3.48e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 87.42 E-value: 3.48e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 199 LQVADNRIQELQEEVHQLQEKLAQMEKGVQDYSRQIELREREIERLSVAVdGGRSPDILSLETRNKTNEKLIAQLNIQVD 278
Cdd:TIGR02168 227 LALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEV-SELEEEIEELQKELYALANEISRLEQQKQ 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 279 FLQQANKELERRIQELmetkatvTTEVVNLSNRNEKLCQELTEIDQMAQQLERHKEQVLEtadrELGEAKKEIKRNLSEM 358
Cdd:TIGR02168 306 ILRERLANLERQLEEL-------EAQLEELESKLDELAEELAELEEKLEELKEELESLEA----ELEELEAELEELESRL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 359 RNLEEKMSKLQWELDVSNKEKERLNGELLL----KSDLETVVHQLEQEKQRLNKKLQSFAVTERELTLEVERMRLEHGIK 434
Cdd:TIGR02168 375 EELEEQLETLRSKVAQLELQIASLNNEIERlearLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQE 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 435 RRDKSPSRLDTFLKGIEDERDYYKKELEKLQHLIQRRscsviycarekppiikcsekgdcnsdihlitrerDELQRMLER 514
Cdd:TIGR02168 455 ELERLEEALEELREELEEAEQALDAAERELAQLQARL----------------------------------DSLERLQEN 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 515 FEKYMEDIQSNVK---LLTAERDRLSVLYKEAKEELSALrqESTGSLAPNNLVSCIEKEKERALSDLRRITAEKEA-LRE 590
Cdd:TIGR02168 501 LEGFSEGVKALLKnqsGLSGILGVLSELISVDEGYEAAI--EAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTfLPL 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 591 KLKNIQELNVVGKSELEKTIEHLTYINhQLENEKYELQSKI------LIMKETIESLESKSKLQAQKLSHVT-------- 656
Cdd:TIGR02168 579 DSIKGTEIQGNDREILKNIEGFLGVAK-DLVKFDPKLRKALsyllggVLVVDDLDNALELAKKLRPGYRIVTldgdlvrp 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 657 -----GDSSHQKTEMNSLRIVSEQLQRSLDDCQHRLSIKRGELESAQEQIKALEQKLESLSHRMTMQSEETHAMKKTIGV 731
Cdd:TIGR02168 658 ggvitGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLAR 737
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 732 MDKEKDFLQETVDEKTEKIASLQDSLISKEKAITQLKVTVSECESSLNQLQETLTNRDREINSLRRQLDATHKELDDVGK 811
Cdd:TIGR02168 738 LEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNE 817
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 812 SReisykenRRLQDDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENKDLLDRFQMLHNRAE 891
Cdd:TIGR02168 818 EA-------ANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALA 890
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 892 DWEIKAQQAEGENSSVRLELLSIDTERRHLRERVELLEKEIQEhinahhaYESQISSM-AKAMSQLEEELRRHESEKATV 970
Cdd:TIGR02168 891 LLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEG-------LEVRIDNLqERLSEEYSLTLEEAEALENKI 963
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|..
gi 564383425 971 LGDVSSLRELCIKLdsgkdimTHQLNSKGLELERAVAELENVKSESELLKKQ 1022
Cdd:TIGR02168 964 EDDEEEARRRLKRL-------ENKIKELGPVNLAAIEEYEELKERYDFLTAQ 1008
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
80-884 |
1.15e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 85.88 E-value: 1.15e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 80 KENNELYLELMKLREYsDKHIKDLKITLKKSSRETADLKFLNNQYVHKVRLLEKESKAKDEKIQQLQEK--NLRAVVQTP 157
Cdd:TIGR02168 222 LRELELALLVLRLEEL-REELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKElyALANEISRL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 158 GGRKRNIAFRRQRMQIDEPAppSEVSSYPVPQPEDPYIADLLQVADnRIQELQEEVHQLQEKLAQMEKGVQDYSRQIELR 237
Cdd:TIGR02168 301 EQQKQILRERLANLERQLEE--LEAQLEELESKLDELAEELAELEE-KLEELKEELESLEAELEELEAELEELESRLEEL 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 238 EREIERLSVAVDGGRSpDILSLETRNKTNEKLIAQLNIQVDFLQQANKELERRIQ-----ELMETKATVTTEVVNLSNRN 312
Cdd:TIGR02168 378 EEQLETLRSKVAQLEL-QIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEeaelkELQAELEELEEELEELQEEL 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 313 EKLCQELTEIdqmaQQLERHKEQVLETADRELGEAKKEIKRNLSEMRNLEEKMSKLQWELdvsnKEKERLNGELLLKSDL 392
Cdd:TIGR02168 457 ERLEEALEEL----REELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALL----KNQSGLSGILGVLSEL 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 393 ETVVHQLEQEKQR-LNKKLQSFAVTERELTLE----------VERMRLEHGIKRRDKSPSRLDTFLKGIEDERDYYK--- 458
Cdd:TIGR02168 529 ISVDEGYEAAIEAaLGGRLQAVVVENLNAAKKaiaflkqnelGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKdlv 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 459 KELEKLQHLIQRRSCSVIYC---------AREKPP---IIkcSEKGDCNSDIHLITRERD-------ELQRMLERFEKYM 519
Cdd:TIGR02168 609 KFDPKLRKALSYLLGGVLVVddldnalelAKKLRPgyrIV--TLDGDLVRPGGVITGGSAktnssilERRREIEELEEKI 686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 520 EDIQSNVKLLTAERDRLSVLYKEAKEELSALRQESTGslapnnlvscIEKEKERALSDLRRITAEKEALREKLkniqeln 599
Cdd:TIGR02168 687 EELEEKIAELEKALAELRKELEELEEELEQLRKELEE----------LSRQISALRKDLARLEAEVEQLEERI------- 749
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 600 vvgkSELEKTIEHLTYINHQLENEKYELQSKILIMKETIESLESKSKLQAQKLSHVTGDSSHQKTEMNSLRIVSEQLQRS 679
Cdd:TIGR02168 750 ----AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRER 825
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 680 LDDCQHRLSIKRGELESAQEQIKALEQKLESLSHRMTMQSEETHAMKKTIGVMDKEKDFLQETVDEKTEKIASLQDSLIS 759
Cdd:TIGR02168 826 LESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRE 905
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 760 KEKAITQLKVTVSECESSLNQLQETLTNRDREINSLRRQLDATHK-ELDDVGKSREISYKENRRLQDDLATMARENQEIS 838
Cdd:TIGR02168 906 LESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSlTLEEAEALENKIEDDEEEARRRLKRLENKIKELG 985
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|.
gi 564383425 839 LELEAAVQEKEEMKSRvHKYITE-----VSRWESLMAAKEKENKDLLDRFQ 884
Cdd:TIGR02168 986 PVNLAAIEEYEELKER-YDFLTAqkedlTEAKETLEEAIEEIDREARERFK 1035
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
319-1114 |
1.58e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.40 E-value: 1.58e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 319 LTEIDQMAQQLERHKEQVLETadRELGEAKKEIKRNLS--EMRNLEEKMSKLQWELDVSNKEKERLNGELLLK----SDL 392
Cdd:TIGR02168 195 LNELERQLKSLERQAEKAERY--KELKAELRELELALLvlRLEELREELEELQEELKEAEEELEELTAELQELeeklEEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 393 ETVVHQLEQEKQRLNKKLQSFAVTERELTLEVERMRLEhgIKRRDKSPSRLDTFLKGIEDERDYYKKELEKLQHLIQRrs 472
Cdd:TIGR02168 273 RLEVSELEEEIEELQKELYALANEISRLEQQKQILRER--LANLERQLEELEAQLEELESKLDELAEELAELEEKLEE-- 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 473 csviycarekppiikcsekgdcnsdihlITRERDELQRMLERFEKYMEDIQSNVKLLTAERDRLSVLYKEAKEELSALRQ 552
Cdd:TIGR02168 349 ----------------------------LKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNN 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 553 EstgslapnnlVSCIEKEKERALSDLRRITAEKEALREKLKNIQELNVVGK-SELEKTIEHLTYINHQLENEKYELQSKI 631
Cdd:TIGR02168 401 E----------IERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAElEELEEELEELQEELERLEEALEELREEL 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 632 LIMKETIESLESKSKLQAQKLSHVTGDSSHQKTEMNSLRIVSEQlQRSLDDCQHRLSIKrgeLESAQEQIKALEQKLESL 711
Cdd:TIGR02168 471 EEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKN-QSGLSGILGVLSEL---ISVDEGYEAAIEAALGGR 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 712 SHRMTMQSEEthAMKKTIGVMDKEKD----FLQETVDEKTEKIASLQDSLISKEKAITQLKVTVSECESSLNQLQ----- 782
Cdd:TIGR02168 547 LQAVVVENLN--AAKKAIAFLKQNELgrvtFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllgg 624
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 783 ----ETLTNRDREINSLRRQLDATHKELDDVGKSREISY-------------KENRRLQDDLATMARENQEISLELEAAV 845
Cdd:TIGR02168 625 vlvvDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGgsaktnssilerrREIEELEEKIEELEEKIAELEKALAELR 704
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 846 QEKEEMKSRVHKYITEVSRWESLMAAKEKENKDLLDRFQMLHNRAEDWEIKAQQAEGENSSVRLELLSIDTERRHLRERV 925
Cdd:TIGR02168 705 KELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI 784
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 926 ELLEKEIQEHINAHHAYESQISSMAKAMSQLEEELRRHESEKATVLGDVSSLRELCIKLDSGKDIMTHQLNSKGLELERA 1005
Cdd:TIGR02168 785 EELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEEL 864
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 1006 VAELENVKSESELLKKQLMTERQTINSLESLLatnrdkefqshltshekdteiQLLKEKLNLSESKLTTQSRETSMLRTK 1085
Cdd:TIGR02168 865 EELIEELESELEALLNERASLEEALALLRSEL---------------------EELSEELRELESKRSELRRELEELREK 923
|
810 820 830
....*....|....*....|....*....|
gi 564383425 1086 VTQLQTDYDNLK-RLMSNEKYERERAIQEL 1114
Cdd:TIGR02168 924 LAQLELRLEGLEvRIDNLQERLSEEYSLTL 953
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
506-1117 |
3.86e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.86 E-value: 3.86e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 506 DELQRMLERFEKYMEDIQSNVKLLTAERdRLSVLYKEAKEELSALRqestGSLAPNNLVScIEKEKERALSDLRRITAEK 585
Cdd:TIGR02168 182 ERTRENLDRLEDILNELERQLKSLERQA-EKAERYKELKAELRELE----LALLVLRLEE-LREELEELQEELKEAEEEL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 586 EALREKLKNIQ---ELNVVGKSELEKTIEHLTYINHQLENEKYELQSKILIMKETIESLESKSKLQAQKLSHVTGDSSHQ 662
Cdd:TIGR02168 256 EELTAELQELEeklEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDEL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 663 KTEMNSLRIVSEQLQRSLDDCQHRLSIKRGELESAQEQIKALEQKLESLSHRMTMQSEETHAMKKTIGVMDKEKDFLQET 742
Cdd:TIGR02168 336 AEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 743 VDEKTEKIASLQDSLISKEKAITQLkvTVSECESSLNQLQETLTNRDREINSLRRQLDATHKELDDvgKSREISYKENRr 822
Cdd:TIGR02168 416 RERLQQEIEELLKKLEEAELKELQA--ELEELEEELEELQEELERLEEALEELREELEEAEQALDA--AERELAQLQAR- 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 823 lQDDLATMARENQEISLELEAAVQEKEEMK---SRVHKYITEVSRWESLMAAkekenkDLLDRFQMLHNRAEDWEIKAQQ 899
Cdd:TIGR02168 491 -LDSLERLQENLEGFSEGVKALLKNQSGLSgilGVLSELISVDEGYEAAIEA------ALGGRLQAVVVENLNAAKKAIA 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 900 AEGENSSVRLELL--------SIDTERRHLRERVELLEKEIQEHINAHHAYESQISSM----------AKAMSQLEEELR 961
Cdd:TIGR02168 564 FLKQNELGRVTFLpldsikgtEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlggvlvvddlDNALELAKKLRP 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 962 R--------------------HESEKATVLGDVSSLRELCIKLDsgkdIMTHQLNSKGLELERAVAELENVKSESELLKK 1021
Cdd:TIGR02168 644 GyrivtldgdlvrpggvitggSAKTNSSILERRREIEELEEKIE----ELEEKIAELEKALAELRKELEELEEELEQLRK 719
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 1022 QLMTERQTINSLESLLATNRDKEFQSHLTSHEKDTEIQLLKEKLNLSESKLTTQSRETSMLRTKVTQLQTDYDNLKRLMS 1101
Cdd:TIGR02168 720 ELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELK 799
|
650
....*....|....*.
gi 564383425 1102 NEKYERERAIQELRRL 1117
Cdd:TIGR02168 800 ALREALDELRAELTLL 815
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
568-1118 |
4.19e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.74 E-value: 4.19e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 568 EKEKERALSDLRRITAEKEALREKLKNIQ---ELNVVGKSELEKTIEHLTYINHQLENEKYELQSKILIMKETIESLESK 644
Cdd:COG1196 224 ELEAELLLLKLRELEAELEELEAELEELEaelEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQD 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 645 SKLQAQKLSHVTGDSSHQKTEMNSLRIVSEQLQRSLDDCQHRLSIKRGELESAQEQIKALEQKLESLSHRMTMQSEETHA 724
Cdd:COG1196 304 IARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEE 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 725 MKKTIGVMDKEKDFLQETVDEKTEKIASLQDSLISKEKAITQLKVTVSECESSLNQLQETLTNRDREINSLRRQLDATHK 804
Cdd:COG1196 384 LAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLE 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 805 ELDDVGKSREisyKENRRLQDDLATMARENQEISLELEAAVQ-----------EKEEMKSRVHKYITEVSRWESLMAAKE 873
Cdd:COG1196 464 LLAELLEEAA---LLEAALAELLEELAEAAARLLLLLEAEADyegflegvkaaLLLAGLRGLAGAVAVLIGVEAAYEAAL 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 874 KEnkDLLDRFQMLHNRAEDWEIKAQQAEGENSSVRLELLSIDTERRHLRERVELLEKEIQEHINAHhayESQISSMAKAM 953
Cdd:COG1196 541 EA--ALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLV---ASDLREADARY 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 954 SQLEEELRRHESEKATVLGDVSSLRELCIKLDSGKDIMTHQLNSKGLELERAVAELENVKSESELLKKQLMTERQTINSL 1033
Cdd:COG1196 616 YVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELEL 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 1034 ESLLATNRDKEFQSHLTSHEKDTEIQLLKEKLNLSESKLTTQSREtsMLRTKVTQLQTDYDNLKRLMSNEKYERE--RAI 1111
Cdd:COG1196 696 EEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEE--LLEEEELLEEEALEELPEPPDLEELEREleRLE 773
|
....*..
gi 564383425 1112 QELRRLG 1118
Cdd:COG1196 774 REIEALG 780
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
686-966 |
7.48e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 66.63 E-value: 7.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 686 RLSIKRGELESAQEQIKALEQKLESLSHRMTMQSEETHAMKKTIGVMDKEKDFLQETVDEKTE-KIASLQDSLISKEKAI 764
Cdd:TIGR02169 224 EGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEeEQLRVKEKIGELEAEI 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 765 TQLKVTVSECESSLNQLQETLTNRDREINSLRRQLDATHKELDDVGKSREISYKENRRLQDDLATMARENQEISLELEAA 844
Cdd:TIGR02169 304 ASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAET 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 845 VQEKEEMKSRVHKYITEVSRWESLMAAKEKENKDLLDRFQMLHNRAEDWEIKAQQAEGENSSVRLELLSIDTERRHLRER 924
Cdd:TIGR02169 384 RDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAAD 463
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 564383425 925 VELLEKEIQEHINAHHAYESQISSMAKAMSQLEEELRRHESE 966
Cdd:TIGR02169 464 LSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEER 505
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
199-966 |
3.08e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 64.70 E-value: 3.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 199 LQVADNRIQELQEEVHQLQEKLAQMEKGVQDYSRQIELREREIERLSVAVDGGRSPDILSLETRNKTNEKLIAQLNIQVD 278
Cdd:TIGR02169 232 KEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIA 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 279 FLQQANKELERRIQELMETKATVTTEVVNLSnrnEKLCQELTEIDQMAQQLERhKEQVLETADRELGEAKKEIKRNLSEM 358
Cdd:TIGR02169 312 EKERELEDAEERLAKLEAEIDKLLAEIEELE---REIEEERKRRDKLTEEYAE-LKEELEDLRAELEEVDKEFAETRDEL 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 359 RNLEEKMSKLQWELDVSNKEKERLNGElllKSDLETVVHQLEQEKQRLNKKLQSFAVTERELTLEVERMRLEhgikrrdk 438
Cdd:TIGR02169 388 KDYREKLEKLKREINELKRELDRLQEE---LQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWK-------- 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 439 spsrldtfLKGIEDERDYYKKELEKLQHLIQRrscsviycarekppiikcsekgdCNSDIHLITRERDELQRMLERFEKY 518
Cdd:TIGR02169 457 --------LEQLAADLSKYEQELYDLKEEYDR-----------------------VEKELSKLQRELAEAEAQARASEER 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 519 MEDIQSNVKLLTAERDRLSVLYKE--AKEELSALRQESTGSLAPNNLV--------SCIEKEKER--------ALSDLRR 580
Cdd:TIGR02169 506 VRGGRAVEEVLKASIQGVHGTVAQlgSVGERYATAIEVAAGNRLNNVVveddavakEAIELLKRRkagratflPLNKMRD 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 581 ITAEKEALREKLKNIQELNVVgksELEKTIEHLTYinhqlenekYELQSKILImketiESLESKSKLQAQ---------- 650
Cdd:TIGR02169 586 ERRDLSILSEDGVIGFAVDLV---EFDPKYEPAFK---------YVFGDTLVV-----EDIEAARRLMGKyrmvtlegel 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 651 --KLSHVTGDSSHQKTEMNSLRIVSEQLQRslddCQHRLSIKRGELESAQEQIKALEQKLESLSHRMTMQSEETHAMKKT 728
Cdd:TIGR02169 649 feKSGAMTGGSRAPRGGILFSRSEPAELQR----LRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKE 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 729 IGVMDKEKDFLQETVDEKTEKIASLQDSLISKEKAITQLKVTVSECESSLNQLQETLTN--------RDREINSLRRQLD 800
Cdd:TIGR02169 725 IEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDlearlshsRIPEIQAELSKLE 804
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 801 ATHKELDdvGKSREISYKENRRLQdDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENKDLL 880
Cdd:TIGR02169 805 EEVSRIE--ARLREIEQKLNRLTL-EKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLE 881
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 881 DRFQMLhnRAEDWEIKAQQAEGENSSVRLElLSIDTERRHLRERVELLEKEIQE--HINAHHAYESQISSMAKAMSQLEE 958
Cdd:TIGR02169 882 SRLGDL--KKERDELEAQLRELERKIEELE-AQIEKKRKRLSELKAKLEALEEElsEIEDPKGEDEEIPEEELSLEDVQA 958
|
....*...
gi 564383425 959 ELRRHESE 966
Cdd:TIGR02169 959 ELQRVEEE 966
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
319-1126 |
4.40e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 64.32 E-value: 4.40e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 319 LTEIDQMAQQLERHKEQVLETADRELGEAKKEIKRNLSEMRNLEEKMSKLQWELDVSNKEKERLNGELllkSDLETVVHQ 398
Cdd:TIGR02169 193 IDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEI---SELEKRLEE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 399 LEQEKQRLNKKL------QSFAVTERELTLEVERMRLEHGIKRRDKSPSRLDTFLKGIEDERDYYKKELEKLQHLIQRRS 472
Cdd:TIGR02169 270 IEQLLEELNKKIkdlgeeEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEER 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 473 csviycarekppiikcsekgdcnsdihlitRERDELQRMLERFEKYMEDIQSNVKLLTAERDRLSVLYKEAKEELSALRQ 552
Cdd:TIGR02169 350 ------------------------------KRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKR 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 553 ESTGSlapNNLVSCIEKEKERALSDLRRITAEKEALREKLKNIQELNVVGKSELEKTIEHLTYINHQLENEkyelQSKIL 632
Cdd:TIGR02169 400 EINEL---KRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKY----EQELY 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 633 IMKETIESLESKSKLQAQKLSHVTGDSSHQKTEMNSLRIVSEQLQRSLDDCQHRLSikrgELESAQEQ-IKALEQkleSL 711
Cdd:TIGR02169 473 DLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVA----QLGSVGERyATAIEV---AA 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 712 SHRMTMQSEETHAMKKTIGVMDKEKDFLQETVDEKTEKIASLQDSLISKEKAITQLKVTVSECESSLNQ-----LQETLT 786
Cdd:TIGR02169 546 GNRLNNVVVEDDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPafkyvFGDTLV 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 787 NRDreINSLRRQL----------DATHKELDDVGKSREISYKEN--RRLQDDLATMARENQEISLELEAAVQEKEEMKSR 854
Cdd:TIGR02169 626 VED--IEAARRLMgkyrmvtlegELFEKSGAMTGGSRAPRGGILfsRSEPAELQRLRERLEGLKRELSSLQSELRRIENR 703
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 855 VHKYITEVSRWESLMAAKEKENKDLLDRFQMLHNRAEDWEIKAQQAEGENSSVRLELLSIDTERRHLRERVELLEKEIQE 934
Cdd:TIGR02169 704 LDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALND 783
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 935 hINAHHAyESQISSMAKAMSQLEEELRRHEsekatvlgdvSSLRELCIKldsgkdimthqLNSKGLELERAVAELENVKS 1014
Cdd:TIGR02169 784 -LEARLS-HSRIPEIQAELSKLEEEVSRIE----------ARLREIEQK-----------LNRLTLEKEYLEKEIQELQE 840
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 1015 ESELLKKQLMTERQTINSLESLLAtnrdkEFQSHLTSHEKDtEIQLLKEKLNLSESKLTTQSrETSMLRTKVTQLQTDYD 1094
Cdd:TIGR02169 841 QRIDLKEQIKSIEKEIENLNGKKE-----ELEEELEELEAA-LRDLESRLGDLKKERDELEA-QLRELERKIEELEAQIE 913
|
810 820 830
....*....|....*....|....*....|..
gi 564383425 1095 NLKRLMSNEKYERERAIQELRRLGLPTSPLSS 1126
Cdd:TIGR02169 914 KKRKRLSELKAKLEALEEELSEIEDPKGEDEE 945
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
675-961 |
8.47e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.03 E-value: 8.47e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 675 QLQRSLDDCQHRLSIKR-----GELESAQEQIKALEQKLESLSHRMTMQSEETHAMKKTIGVMDKEKDFLQETVDEKTEK 749
Cdd:COG1196 217 ELKEELKELEAELLLLKlreleAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 750 IASLQDSLISKEKAITQLKVTVSECESSLNQLQETLTNRDREINSLRRQLDATHKELDDVGKSREISYKENRRLQDDLAT 829
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 830 MARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENKDLLDRFQMLHNRAEDWEIKAQQAEGENSSVRL 909
Cdd:COG1196 377 AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEE 456
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 564383425 910 ELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSQLEEELR 961
Cdd:COG1196 457 EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLE 508
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
205-919 |
5.93e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.47 E-value: 5.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 205 RIQELQEEVHQLQEKLAQMEKGVQDYS--RQIELRErEIERLSVAVDGGRSpDILSLETRNKTNEKLIAQLNIQVDFLQQ 282
Cdd:TIGR02169 259 EISELEKRLEEIEQLLEELNKKIKDLGeeEQLRVKE-KIGELEAEIASLER-SIAEKERELEDAEERLAKLEAEIDKLLA 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 283 ANKELERRIQELMETKATVTTEVVNLSNRNEKLCQELTEIDQMAQQL-ERHKE--QVLETADRELGEAKKEIKRNLSEMR 359
Cdd:TIGR02169 337 EIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETrDELKDyrEKLEKLKREINELKRELDRLQEELQ 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 360 NLEEKMSKLQWELDVSNKEKERLNGELLlksDLETVVHQLEQEKQRLNKKLQSfaVTERELTLEVERMRLEHGIKRRDKS 439
Cdd:TIGR02169 417 RLSEELADLNAAIAGIEAKINELEEEKE---DKALEIKKQEWKLEQLAADLSK--YEQELYDLKEEYDRVEKELSKLQRE 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 440 PSRLDTFLKGIEDERDYYKKELEKLQHLIQRRSCSVIYCAREKPPIIKCSE--------------KGDCNSDIHLITRER 505
Cdd:TIGR02169 492 LAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEvaagnrlnnvvvedDAVAKEAIELLKRRK 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 506 ---------DELQRML----------------------ERFEK----------YMEDIQS------NVKLLTAERD---- 534
Cdd:TIGR02169 572 agratflplNKMRDERrdlsilsedgvigfavdlvefdPKYEPafkyvfgdtlVVEDIEAarrlmgKYRMVTLEGElfek 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 535 ------------RLSVLYKEAKEELSALRQESTGslapnnlvscIEKEKERALSDLRRITAEKEALREKLKNIQELNvvg 602
Cdd:TIGR02169 652 sgamtggsraprGGILFSRSEPAELQRLRERLEG----------LKRELSSLQSELRRIENRLDELSQELSDASRKI--- 718
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 603 kSELEKTIEHLTYINHQLENEKYELQSKILIMKETIESLESksklqaqKLSHVTGDSSHQKTEMNSLRIVSEQLQRSLDd 682
Cdd:TIGR02169 719 -GEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKS-------ELKELEARIEELEEDLHKLEEALNDLEARLS- 789
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 683 cQHRLSIKRGELESAQEQIKALEQKLESLSHRMTMQSEETHamkktigVMDKEKDFLQETVDEKTEKIASLQDSLISKEK 762
Cdd:TIGR02169 790 -HSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKE-------YLEKEIQELQEQRIDLKEQIKSIEKEIENLNG 861
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 763 AITQLKVTVSECESSLNQLQETLTNRDREINSLRRQLDATHKELDDVGKSREISYKENRRLQDDLATMARENQEISLELE 842
Cdd:TIGR02169 862 KKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKG 941
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564383425 843 AAVQEKEEMKSrVHKYITEVSRWESLMAAKEKENKDLLDRFQMLHNRAEDWEIKAQQAEGENSSVRLELLSIDTERR 919
Cdd:TIGR02169 942 EDEEIPEEELS-LEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKR 1017
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
203-823 |
8.32e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 59.65 E-value: 8.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 203 DNRIQELQEEVHQLQEKLAQMEKGVQDYSRQIELREREIERLSVAVDGGRSpDILSLETRNKTNEKLIAQLN-------- 274
Cdd:TIGR04523 32 DTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQ-QIKDLNDKLKKNKDKINKLNsdlskins 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 275 -IQVDFLQQANKE-----LERRIQELMETKATVTTEVVNLSNRNEKLCQELTEIDQMAQQLERHKEQVLEtadrELGEAK 348
Cdd:TIGR04523 111 eIKNDKEQKNKLEvelnkLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEK----EKLNIQ 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 349 KEIKRNLSEMRNLEEKMSKLQweldVSNKEKERLNGELL-LKSDLETVVHQLEQEKQRLNKKLQSFAVTEREL-TLEVER 426
Cdd:TIGR04523 187 KNIDKIKNKLLKLELLLSNLK----KKIQKNKSLESQISeLKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLnQLKDEQ 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 427 MRLEHGIKRRDKSPSRLDTFLKGIEDERDYYKKELEKLQHliqrrscsviycaREKPPIIKcsekgDCNSDIHLITRERD 506
Cdd:TIGR04523 263 NKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNN-------------QKEQDWNK-----ELKSELKNQEKKLE 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 507 ELQRMLERFEKYMEDIQSNVKLLTAERDRLSVLYKEAKEELSalrqestgslAPNNLVSCIEKEKERALSDLRRITAEKE 586
Cdd:TIGR04523 325 EIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELE----------EKQNEIEKLKKENQSYKQEIKNLESQIN 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 587 ALREKLKNIQELNvvgkSELEKTIEHLTYINHQLENEKYELQSKILIMKETIESLESKSKLQAQKLSHVTGDSSHQKTEM 666
Cdd:TIGR04523 395 DLESKIQNQEKLN----QQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQL 470
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 667 NSLRIVSEQLQRSLDDCQHRLSIKRGELESAQEQIKALEQKLESLSHRMTMQSEETHAMKKTIGVMDKEKDFLQETVDEK 746
Cdd:TIGR04523 471 KVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKD 550
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564383425 747 TE--KIASLQDSLISKEKAITQLKVTVSECESSLNQLQETLTNRDREINSLRRQLDATHKELDDVGKSREISYKENRRL 823
Cdd:TIGR04523 551 DFelKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKL 629
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
739-1023 |
1.54e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.18 E-value: 1.54e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 739 LQETVDEKTEKIASLQDSLISKEKAitQLKVTVSECESSLNQLQETLTNRDREINSLRRQLDATHKELDDVGKSREISYK 818
Cdd:COG1196 218 LKEELKELEAELLLLKLRELEAELE--ELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 819 ENRRLQDDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENKDLLDRFQMLHNRAEDWEIKAQ 898
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 899 QAEGENSSVRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSQLEEELRRHESEKATVLGDVSSLR 978
Cdd:COG1196 376 EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE 455
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 564383425 979 ELCIKLDSGKDIMTHQLNSKGLELERAVAELENVKSESELLKKQL 1023
Cdd:COG1196 456 EEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE 500
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
567-967 |
2.04e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 58.51 E-value: 2.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 567 IEKEKERALSDLRRITAEKEALREKLKNIQELnvvgkselEKTIEHLTYINHQLENEKYELQSKILIMKETIESLESKSK 646
Cdd:PRK02224 225 YEEQREQARETRDEADEVLEEHEERREELETL--------EAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERD 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 647 LQAQKLSHVTGDSSHQKTEMNSLRIVSEQLQRSLDDCQHRLSIKRGELESAQEQIKALEQKLESLshrmtmqseethamK 726
Cdd:PRK02224 297 DLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEEL--------------R 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 727 KTIGVMDKEKDFLQETVDEKTEKIASLQDSLISKEKAITQLKVTVSECESSLNQLQETLTNRDREINSLRRQLD------ 800
Cdd:PRK02224 363 EEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRtarerv 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 801 ATHKELDDVGKSRE-------------ISYKENRR--LQDDLATMARENQEISLELEAAVQEKeEMKSRVHKYITEVSRW 865
Cdd:PRK02224 443 EEAEALLEAGKCPEcgqpvegsphvetIEEDRERVeeLEAELEDLEEEVEEVEERLERAEDLV-EAEDRIERLEERREDL 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 866 ESLMAAKEKENKDLLDRFQMLHNR-------AEDWEIKAQQAEGENSSVRLELLSIDTERRHLRERVELLEKeIQEHINA 938
Cdd:PRK02224 522 EELIAERRETIEEKRERAEELRERaaeleaeAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER-IRTLLAA 600
|
410 420 430
....*....|....*....|....*....|..
gi 564383425 939 HHAYESQISSMA---KAMSQLEEELRRHESEK 967
Cdd:PRK02224 601 IADAEDEIERLRekrEALAELNDERRERLAEK 632
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
333-894 |
2.09e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 58.49 E-value: 2.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 333 KEQVLETADRELGEAKKEIKRNLSEMRNLEEKMSKLQWELDVSNKEKERLNGEL-LLKSDLETVVHQLEQEKQRLNKKLQ 411
Cdd:TIGR04523 122 LEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELnLLEKEKLNIQKNIDKIKNKLLKLEL 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 412 SFAVTE------RELTLEVERMR-----LEHGIKRRDKSPSRLDTFLKGIEDERDYYKKELEKLQHLIQRRSCSViycaR 480
Cdd:TIGR04523 202 LLSNLKkkiqknKSLESQISELKkqnnqLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKEL----E 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 481 EKPPIIKCSEKGDCNSDIHLITRERDELQRMLERFEKYMEDIQSNVKLLTAERDRLSVLYKEAKEELSALRQESTGSLAP 560
Cdd:TIGR04523 278 QNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESE 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 561 NnlvSCIEKEKERALSDLRRITAEKEALREKLKNIQElnvvGKSELEKTIEHLTYINHQLENEKYELQSKILIMKETIES 640
Cdd:TIGR04523 358 N---SEKQRELEEKQNEIEKLKKENQSYKQEIKNLES----QINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIER 430
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 641 LESKSKLQAQKLSHVTGDSSHQKTEMNSLRIVSEQLQRSLDDCQHRLSIKRGELESAQEQIKALEQKLESLSHRMTMQSE 720
Cdd:TIGR04523 431 LKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEE 510
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 721 ETHAMKKTIGVMDKEKDFLQETVDEKTEKIASLQDSLISKEKAIT--QLKVTVSECESSLNQLQETLTNRDREINSLRRQ 798
Cdd:TIGR04523 511 KVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKkeNLEKEIDEKNKEIEELKQTQKSLKKKQEEKQEL 590
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 799 LDATHKELDDVGKSREISYKENRRLQDDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENKD 878
Cdd:TIGR04523 591 IDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKE 670
|
570
....*....|....*.
gi 564383425 879 LLDRFQMLHNRAEDWE 894
Cdd:TIGR04523 671 SKTKIDDIIELMKDWL 686
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
199-848 |
3.07e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.16 E-value: 3.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 199 LQVADNRIQELQEEVHQLQEKLAQMEKGVQDYSRQIELREREIERLSVAVDGGRSpDILSLETRNKTNEKLIAQLNIQVD 278
Cdd:TIGR02169 317 LEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRA-ELEEVDKEFAETRDELKDYREKLE 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 279 FLQQANKELERRIQELMETKATVTTEVVNLSNRNEKLCQELTEIDQMAQQLE---RHKEQVLETADRELGEAKKEIKRNL 355
Cdd:TIGR02169 396 KLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKAleiKKQEWKLEQLAADLSKYEQELYDLK 475
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 356 SEMRNLEEKMSKLQWELD--------VSNKEKERLNGELLLKSDLETV---VHQLEQEKQRLNKKLQS-------FAVTE 417
Cdd:TIGR02169 476 EEYDRVEKELSKLQRELAeaeaqaraSEERVRGGRAVEEVLKASIQGVhgtVAQLGSVGERYATAIEVaagnrlnNVVVE 555
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 418 RELT------------------LEVERMRLEHGIKRRDKSPSRLDTFLKGIEDERDYYK------------KELEKLQHL 467
Cdd:TIGR02169 556 DDAVakeaiellkrrkagratfLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPafkyvfgdtlvvEDIEAARRL 635
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 468 I-----------------------QRRSCSVIYCAREKPPIIKCS--------EKGDCNSDIHLITRERDELQRMLERFE 516
Cdd:TIGR02169 636 MgkyrmvtlegelfeksgamtggsRAPRGGILFSRSEPAELQRLRerleglkrELSSLQSELRRIENRLDELSQELSDAS 715
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 517 KYMEDIQSNVKLLTAERDRLSVLYKEAKEELSALRQESTGSLAPNNLVSCIEKEKERALSDLRRITAEKEA--LREKLKN 594
Cdd:TIGR02169 716 RKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEArlSHSRIPE 795
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 595 IQ-ELNVVGK---------SELEKTIEHLTYINHQLENEKYELQSKILIMKETIESLESksklqaqklshvtgdsshqkt 664
Cdd:TIGR02169 796 IQaELSKLEEevsriearlREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEK--------------------- 854
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 665 EMNSLRIVSEQLQRSLDDCQHRLSIKRGELESAQEQIKALEQKLEslshrmtmqseethAMKKTIGVMDKEKDFLQETVD 744
Cdd:TIGR02169 855 EIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLR--------------ELERKIEELEAQIEKKRKRLS 920
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 745 EKTEKIASLQDSLISKEKAITQLkVTVSECESSLNQLQETLTNRDREINSLR-------RQLDATHKELDDVGKSREISY 817
Cdd:TIGR02169 921 ELKAKLEALEEELSEIEDPKGED-EEIPEEELSLEDVQAELQRVEEEIRALEpvnmlaiQEYEEVLKRLDELKEKRAKLE 999
|
730 740 750
....*....|....*....|....*....|.
gi 564383425 818 KENRRLQDDLATMARENQEISLELEAAVQEK 848
Cdd:TIGR02169 1000 EERKAILERIEEYEKKKREVFMEAFEAINEN 1030
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
199-430 |
4.74e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.64 E-value: 4.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 199 LQVADNRIQELQEEVHQLQEKLAQMEKGVQDYSRQIELREREIERLSVAVDGGRSpDILSLETRnktneklIAQLNIQVD 278
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQA-EEYELLAE-------LARLEQDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 279 FLQQANKELERRIQELMETKATVTTEVVNLSNRNEKLCQELTEIDQMAQQLERHKEQVLETADRELGEAKKEIKRNLSEM 358
Cdd:COG1196 306 RLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELA 385
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564383425 359 RNLEEKMSKLQWELDVSNKEKERLNGELLLKSDLETVVHQLEQEKQRLNKKLQSFAVTERELTLEVERMRLE 430
Cdd:COG1196 386 EELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE 457
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
579-913 |
1.14e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.22 E-value: 1.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 579 RRITAEKEaLREKLKNIQELNVVgKSELEKTIEHL------TYINHQLENEKYELQSKILIM-----KETIESLESKSKL 647
Cdd:TIGR02168 173 RRKETERK-LERTRENLDRLEDI-LNELERQLKSLerqaekAERYKELKAELRELELALLVLrleelREELEELQEELKE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 648 QAQKLSHVTGDSSHQKTEMNSLRIVSEQLQRSLDDCQHRLSIKRGELESAQEQIKALEQKLESLSHRMTMQSEETHAMKK 727
Cdd:TIGR02168 251 AEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELES 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 728 TIGVMDKEKDFLQETVDEKTEKIASLQDSLISKEKAITQLKVTVSECESSLNQLQETLTNRDREINSLRRQLDATHKELD 807
Cdd:TIGR02168 331 KLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLE 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 808 DVGKSREISYKENRRLQDDLATMAREnqEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENKDLLDRFQMLH 887
Cdd:TIGR02168 411 RLEDRRERLQQEIEELLKKLEEAELK--ELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQ 488
|
330 340
....*....|....*....|....*.
gi 564383425 888 NRAEDWEIKAQQAEGENSSVRLELLS 913
Cdd:TIGR02168 489 ARLDSLERLQENLEGFSEGVKALLKN 514
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
205-814 |
1.15e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 56.23 E-value: 1.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 205 RIQELQEEVHQLQEKLAQMEKGVQDYSRQIELREREIERLSVAVDGGRSpdilSLETRNKTNEKlIAQLNIQVDFLQQAN 284
Cdd:PRK03918 180 RLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEK----EVKELEELKEE-IEELEKELESLEGSK 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 285 KELERRIQELMETKATVTTEVVNLsnrnEKLCQELTEIDQMAQQLERHKEQVLETADrELGEAKKEIKRNLSEMRNLEEK 364
Cdd:PRK03918 255 RKLEEKIRELEERIEELKKEIEEL----EEKVKELKELKEKAEEYIKLSEFYEEYLD-ELREIEKRLSRLEEEINGIEER 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 365 MSKLqweldvsNKEKERLNgelllksDLETVVHQLEQEKQRLNKKLQSFavtERELTLEVERMRLEHgiKRRDKSPSRLD 444
Cdd:PRK03918 330 IKEL-------EEKEERLE-------ELKKKLKELEKRLEELEERHELY---EEAKAKKEELERLKK--RLTGLTPEKLE 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 445 TFLKGIEDERDYYKKELEKLqhLIQRRSCSVIYCAREKPPIIKCSEKGDCNSDIHLITRERDElqRMLERFEKYMEDIQS 524
Cdd:PRK03918 391 KELEELEKAKEEIEEEISKI--TARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRK--ELLEEYTAELKRIEK 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 525 NVKLLTAERDRLSVLYKEAKEELSALRQESTGSLAPNNLVSCIEKEKERALSDLRRITAEKEALREKLKNIQELNVVGKS 604
Cdd:PRK03918 467 ELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKK 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 605 ELEKTIEhltyinhqLENEKYELQSKILIMKETIESLESKSKlqaqklshvtgdsshqKTEMNSLRIVSEQLQR------ 678
Cdd:PRK03918 547 ELEKLEE--------LKKKLAELEKKLDELEEELAELLKELE----------------ELGFESVEELEERLKElepfyn 602
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 679 ---SLDDCQHRLSIKRGELESAQEQIKALEQKLESLSHRMTMQSEEthamkktigVMDKEKDFLQETVDEKTEKIASLQD 755
Cdd:PRK03918 603 eylELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKE---------LEELEKKYSEEEYEELREEYLELSR 673
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 564383425 756 SLISKEKAITQLKVTVSECESSLNQLQETLTNRDREinslRRQLDATHKELDDVGKSRE 814
Cdd:PRK03918 674 ELAGLRAELEELEKRREEIKKTLEKLKEELEEREKA----KKELEKLEKALERVEELRE 728
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
334-864 |
1.25e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 56.23 E-value: 1.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 334 EQVLETADRELGEAKKEIKRNLSEMRNLEEKMSKLQWELDVSNKEKERLNGELLLKSDLETVVHQLEQEKQRLNKKLQSF 413
Cdd:PRK03918 192 EELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEEL 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 414 AVTERELTLEVERMRlehGIKRRDKSPSRLDTFLKGIEDERDYYKKELEKLQHLIqrrscsviycareKPPIIKCSEKGD 493
Cdd:PRK03918 272 KKEIEELEEKVKELK---ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEI-------------NGIEERIKELEE 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 494 CNSDIHLITRERDELQRMLERFEKYMEDIQSNVKLLTA-----------ERDRLSVLYKEAKEELSALRQESTGSLAPNN 562
Cdd:PRK03918 336 KEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEElerlkkrltglTPEKLEKELEELEKAKEEIEEEISKITARIG 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 563 LVSCIEKEKERALSDLRRITAE-----KEALREKLKNIQELNVVGKSELEKTIEHLTYINHQLENEKYEL------QSKI 631
Cdd:PRK03918 416 ELKKEIKELKKAIEELKKAKGKcpvcgRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELekvlkkESEL 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 632 LIMKET---IESLESK-SKLQAQKLSHVTGDSSHQKTEMNSL----RIVSEQLQRsLDDCQHRLSIKRGELESAQEQIKA 703
Cdd:PRK03918 496 IKLKELaeqLKELEEKlKKYNLEELEKKAEEYEKLKEKLIKLkgeiKSLKKELEK-LEELKKKLAELEKKLDELEEELAE 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 704 LEQKLESLSHRMTMQSEET-----HAMKKTIGVMDKEKDflqetVDEKTEKIASLQDSLISKEKAITQLKVTVSECESSL 778
Cdd:PRK03918 575 LLKELEELGFESVEELEERlkelePFYNEYLELKDAEKE-----LEREEKELKKLEEELDKAFEELAETEKRLEELRKEL 649
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 779 NQL-----QETLTNRDREINSLRRQLDATHKELDDVGKSREISYKENRRLQDDLATMARENQEISLeLEAAVQEKEEMKS 853
Cdd:PRK03918 650 EELekkysEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEK-LEKALERVEELRE 728
|
570
....*....|.
gi 564383425 854 RVHKYITEVSR 864
Cdd:PRK03918 729 KVKKYKALLKE 739
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
568-1075 |
4.12e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 54.26 E-value: 4.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 568 EKEKERALSDLRRITAEKEALREKLKNIQE-----LNVVGKSELEKTIEHLTYINHQLENEKY-ELQSKILIMKETIESL 641
Cdd:TIGR04523 151 EKELEKLNNKYNDLKKQKEELENELNLLEKeklniQKNIDKIKNKLLKLELLLSNLKKKIQKNkSLESQISELKKQNNQL 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 642 ESKSKLQAQKLSHVTGDSSHQKTEMNslrivseQLQRSLDDCQHRLSIKRGELESAQEQIKALEQKLESLshrmtmqsee 721
Cdd:TIGR04523 231 KDNIEKKQQEINEKTTEISNTQTQLN-------QLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQL---------- 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 722 thamKKTIGVMDKEKDflQETVDEKTEKIASLQDSLISKEKAITQLKVTVSECESSLNQLQETLTNRDREINSLRRQLDA 801
Cdd:TIGR04523 294 ----KSEISDLNNQKE--QDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEE 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 802 THKELDDVGKSREISYKENRRLQ---DDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSrweSLMAAKEKENKD 878
Cdd:TIGR04523 368 KQNEIEKLKKENQSYKQEIKNLEsqiNDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLK---ETIIKNNSEIKD 444
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 879 LLDRFQMLHNRAEDWEIKAQQAEGENSSVRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSQLEE 958
Cdd:TIGR04523 445 LTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKE 524
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 959 ELRRHESEKATVLGDVSSLRELCIKLDSGKD-----IMTHQLNSKGLELERAVAELENVKSESELLKKQLMTERQTINSL 1033
Cdd:TIGR04523 525 KIEKLESEKKEKESKISDLEDELNKDDFELKkenleKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKE 604
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 564383425 1034 ESLLATNRDKEFQSHLTSHEKDTEIQLLKEKLNLSESKLTTQ 1075
Cdd:TIGR04523 605 IEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQE 646
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
497-1036 |
6.35e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.79 E-value: 6.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 497 DIHLITRERDELQRMLERFEKYMEDIQSNVKLLTAERDRLSVLYKEAKEELSALRQESTGSLAPNNLvscIEKEKERALS 576
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYE---LLAELARLEQ 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 577 DLRRITAEKEALREKLKniqelnvvgksELEKTIEHLTYINHQLENEKYELQSKILIMKETIESLESKSKLQAQKLSHVT 656
Cdd:COG1196 303 DIARLEERRRELEERLE-----------ELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 657 GDSSHQKTEMNSLRIVSEQLQRSLDDCQHRLSIKRGELESAQEQIKALEQKLESLSHRMTMQSEETHAMKKTIGVMDKEK 736
Cdd:COG1196 372 AELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 737 DFLQETVDEKTEKIASLQDSLISKEKAITQLKVTVSECESSLNQLQETLTNRD--------REINSLRRQLDATHKELDD 808
Cdd:COG1196 452 AELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEgflegvkaALLLAGLRGLAGAVAVLIG 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 809 VGKSRE-------------------------ISY---------------KENRRLQDDLATMARENQEISLELEAAVQEK 848
Cdd:COG1196 532 VEAAYEaaleaalaaalqnivveddevaaaaIEYlkaakagratflpldKIRARAALAAALARGAIGAAVDLVASDLREA 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 849 EEMKSRVHKYITEVSRWESLMAAKEKENKDLLDRFQMLHNRAEDWEIKAQQAEGENSSVRLELLSIDTERRHLRERVELL 928
Cdd:COG1196 612 DARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEE 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 929 EKEIQEHINAHHAYESQISSMAKAMSQLEEELRRHESEKATVLGDVSSLRELCIKLDSGKDIMTHQLNSKGLELER---- 1004
Cdd:COG1196 692 ELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELEReler 771
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 564383425 1005 --------------AVAELENVKSESELLKKQLMTERQTINSLESL 1036
Cdd:COG1196 772 lereiealgpvnllAIEEYEELEERYDFLSEQREDLEEARETLEEA 817
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
124-426 |
3.49e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.48 E-value: 3.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 124 YVHKVRLLEKESKAKDEKIQQLQEKNLRAVVQTpggRKRNIAFRRQRMQIDEpappsevssypvpqpedpyiadllqvAD 203
Cdd:COG1196 230 LLLKLRELEAELEELEAELEELEAELEELEAEL---AELEAELEELRLELEE--------------------------LE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 204 NRIQELQEEVHQLQEKLAQMEKGVQDYSRQIELREREIERLSVAvdggrspdILSLETRNKTNEKLIAQLNIQvdfLQQA 283
Cdd:COG1196 281 LELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEE--------LAELEEELEELEEELEELEEE---LEEA 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 284 NKELERRIQELMETKATVTTEVVNLSNRNEKLCQELTEIDQMAQQLERHKEQVLETADRELGEAKKEIKRNLSEMRNLEE 363
Cdd:COG1196 350 EEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEA 429
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564383425 364 KMSKLQWELDVSNKEKERLNGELLLKSDLETVVHQLEQEKQRLNKKLQSFAVTERELTLEVER 426
Cdd:COG1196 430 LAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR 492
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
267-855 |
4.22e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.27 E-value: 4.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 267 EKLIAQLNIQVDFLQQANKElerRIQELmetkatVTTEVVNLSNRNEKLCQELTEIDQMAQQLERHKEQVLETAD---RE 343
Cdd:pfam15921 248 EALKSESQNKIELLLQQHQD---RIEQL------ISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSmymRQ 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 344 LGEAKKEIKRNLSEMRN----LEEKMSKLQWELDVSNKEKerlngelllkSDLETVVHQLEQEKQRLNKKLQSFAVT--- 416
Cdd:pfam15921 319 LSDLESTVSQLRSELREakrmYEDKIEELEKQLVLANSEL----------TEARTERDQFSQESGNLDDQLQKLLADlhk 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 417 -ERELTLEVERMRLehgIKRRDKSPSRLDTFLKGIEDERDYykkELEKLQHLIQrrscsviycarekppiikcSEKGDCN 495
Cdd:pfam15921 389 rEKELSLEKEQNKR---LWDRDTGNSITIDHLRRELDDRNM---EVQRLEALLK-------------------AMKSECQ 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 496 SDIHlitRERDELQRMLERFEKymediqsnVKLLTAERDRLSVLYKEAKEELSALRQESTGSLAPNNLVSCIEKEKERAL 575
Cdd:pfam15921 444 GQME---RQMAAIQGKNESLEK--------VSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAI 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 576 SDLR-RITAEKEALREKLKNIQELNVVGkselektiEHLTYINHQLENEKYELQSK---ILIMKETIESL--------ES 643
Cdd:pfam15921 513 EATNaEITKLRSRVDLKLQELQHLKNEG--------DHLRNVQTECEALKLQMAEKdkvIEILRQQIENMtqlvgqhgRT 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 644 KSKLQAQKlSHVTGDSSHQKTEMNSLRIVSEQLQRSLDDCQHRLS---IKRGELESAQEQ----IKALEQKLESLSHRMT 716
Cdd:pfam15921 585 AGAMQVEK-AQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSdleLEKVKLVNAGSErlraVKDIKQERDQLLNEVK 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 717 MQSEETHAMKKTIGVMDKEKDFLQETVDEKTEKiasLQDSLISKEKAITQLKVTVSECESSLNQ-------LQETLTNRD 789
Cdd:pfam15921 664 TSRNELNSLSEDYEVLKRNFRNKSEEMETTTNK---LKMQLKSAQSELEQTRNTLKSMEGSDGHamkvamgMQKQITAKR 740
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564383425 790 REINSLRRQLDATHKELDDVGKSREISYKENRRLQDDLATMARENQEISLELEAAVQEKEEMKSRV 855
Cdd:pfam15921 741 GQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKV 806
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
204-855 |
5.29e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 50.82 E-value: 5.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 204 NRIQELQEEVHQLQEKLAQMEKGVQDYSRQIELREREIERLS-VAVDGGRSPDILSLETRNKTNEKLIAQLNIQVDFLQQ 282
Cdd:TIGR00606 347 VEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSeRQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQE 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 283 ANKELERRIQELMETkatVTTEVVNLSNRNEKLCQELTEIDQMAQQLER--HKEQVLETADRELGEA---------KKEI 351
Cdd:TIGR00606 427 QADEIRDEKKGLGRT---IELKKEILEKKQEELKFVIKELQQLEGSSDRilELDQELRKAERELSKAeknsltetlKKEV 503
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 352 KRNLSEMRNLEEKMSKLQWELDVSNKEKERLNGELLLKSDLETVVHQLEQEKQRLNKKLQSFA-VTERELTLEVERMRLE 430
Cdd:TIGR00606 504 KSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLgYFPNKKQLEDWLHSKS 583
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 431 HGIKRRDKSPSRLDTFLKGIEDERDYYKKELEKLQHLIQRRSCSVI-YCAREKPPiikcSEKGDCNSDIHLITRERDELQ 509
Cdd:TIGR00606 584 KEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFdVCGSQDEE----SDLERLKEEIEKSSKQRAMLA 659
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 510 RMLERFEKYMEDIQSNVKLLTAERDRLSVLYKEAKEELSALrqESTGSLAPNNL------VSCIEKEKERAL-------S 576
Cdd:TIGR00606 660 GATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDL--QSKLRLAPDKLksteseLKKKEKRRDEMLglapgrqS 737
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 577 DLRRITAEKEALREKLKNIQELNVVGKSELEKTIEHLTYINHQLENEKyELQSKILIMK---ETIESLESKSKLQAQKLS 653
Cdd:TIGR00606 738 IIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAK-VCLTDVTIMErfqMELKDVERKIAQQAAKLQ 816
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 654 HVTGDSSHQKtemnsLRIVSEQLQRSLDDCQHRLSIKRGELESAQEQIKALEQKLESL-SHRMTMQS--EETHAMKKTIG 730
Cdd:TIGR00606 817 GSDLDRTVQQ-----VNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELkSEKLQIGTnlQRRQQFEEQLV 891
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 731 VMDKEKDFLQETVDEKTEKIA----SLQDSLISKEKAITQLKVTVSECESSLNQLQETLTN------------------- 787
Cdd:TIGR00606 892 ELSTEVQSLIREIKDAKEQDSpletFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNihgymkdienkiqdgkddy 971
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564383425 788 ---RDREINSLRRQLDATHK-------ELDDVGKSREISYKENRRLQDDLATMARENQEISLELEAAVQEKEEMKSRV 855
Cdd:TIGR00606 972 lkqKETELNTVNAQLEECEKhqekineDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQV 1049
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
326-934 |
6.33e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.71 E-value: 6.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 326 AQQLERHkeqvletadRELGEAKKEIKRNLS--EMRNLEEKMSKLQWELDVSNKEKERLNGELllkSDLETVVHQLEQEK 403
Cdd:COG1196 209 AEKAERY---------RELKEELKELEAELLllKLRELEAELEELEAELEELEAELEELEAEL---AELEAELEELRLEL 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 404 QRLNKKLQSFAVTERELTLEVErmRLEHGIKRRDKSpsrldtfLKGIEDERDYYKKELEKLQHLIQRRScsviycarekp 483
Cdd:COG1196 277 EELELELEEAQAEEYELLAELA--RLEQDIARLEER-------RRELEERLEELEEELAELEEELEELE----------- 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 484 piikcSEKGDCNSDIHLITRERDELQRMLERFEKYMEDIQSNVKLLTAERDRLSVLYKEAKEELSALRQESTGslapnnl 563
Cdd:COG1196 337 -----EELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEE------- 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 564 vscIEKEKERALSDLRRITAEKEALREKLKNIQELNVVGKSELEKTIEHLTYINHQLENEKYELQSKILIMKETIESLES 643
Cdd:COG1196 405 ---LEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 644 KSKLQAQKLSHVTGDSSHQKTEMNSLRIVSEQLQRSLDDCQHRLSIKRGELESAQEQikALEQKLESLSHRMTMQSEEth 723
Cdd:COG1196 482 LLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEA--ALEAALAAALQNIVVEDDE-- 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 724 AMKKTIGVMDKEKD----FLQETVDEKTEKIASLQDSLISkEKAITQLKVTVSECESSLNQLQETLTNRDRE---INSLR 796
Cdd:COG1196 558 VAAAAIEYLKAAKAgratFLPLDKIRARAALAAALARGAI-GAAVDLVASDLREADARYYVLGDTLLGRTLVaarLEAAL 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 797 RQLDATHKELDDVGKSREISYKENRRLQDDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKEN 876
Cdd:COG1196 637 RRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEER 716
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564383425 877 KDLLDRFQMLHNRAE----DWEIKAQQAEGENSSVRLELLSIDTERRHLRERVELLEKEIQE 934
Cdd:COG1196 717 LEEELEEEALEEQLEaereELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
775-1097 |
8.09e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.44 E-value: 8.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 775 ESSLNQLQETLTNRDR---EINSLRRQLDATHKELDDVGKSREISyKENRRLQDDLATM-----ARENQEISLELEAAVQ 846
Cdd:TIGR02168 175 KETERKLERTRENLDRledILNELERQLKSLERQAEKAERYKELK-AELRELELALLVLrleelREELEELQEELKEAEE 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 847 EKEEMKSRVHKYITEVSRWESLMAAKEKENKDLLDRFQMLHNRAEDWEIKAQQAEGENSSVRLELLSIDTERRHLRERVE 926
Cdd:TIGR02168 254 ELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLD 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 927 LLEKEIQEhinahhaYESQISSMAKAMSQLEEELRRHESEKATVLGDVSSLRELCIKLDSGKDIMTHQLNSKGLELERAV 1006
Cdd:TIGR02168 334 ELAEELAE-------LEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 1007 AELENvkseselLKKQLMTERQTINSLESLLATNRDKEFQSHLTshEKDTEIQLLKEKLNLSESKLTTQSRETSMLRTKV 1086
Cdd:TIGR02168 407 ARLER-------LEDRRERLQQEIEELLKKLEEAELKELQAELE--ELEEELEELQEELERLEEALEELREELEEAEQAL 477
|
330
....*....|.
gi 564383425 1087 TQLQTDYDNLK 1097
Cdd:TIGR02168 478 DAAERELAQLQ 488
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
196-445 |
1.02e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 1.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 196 ADLLQVADNRIQELQEEVHQLQEKLAQMEKGVQDYSRQIELREREIERLSVAVDggrspdilSLETRNKTNEKLIAQLNI 275
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIR--------ALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 276 QVDFLQQANKELERRIQEL---METKATVTTEVVNLSNRNeklcqelteIDQMAQQLERHKEqvLETADRELGEakkEIK 352
Cdd:COG4942 91 EIAELRAELEAQKEELAELlraLYRLGRQPPLALLLSPED---------FLDAVRRLQYLKY--LAPARREQAE---ELR 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 353 RNLSEMRNLEEKMSKLQWELDVSNKEKERLNGEL-LLKSDLETVVHQLEQEKQRLNKKLQSFAVTERELTLEVERMRLEH 431
Cdd:COG4942 157 ADLAELAALRAELEAERAELEALLAELEEERAALeALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
250
....*....|....
gi 564383425 432 GIKRRDKSPSRLDT 445
Cdd:COG4942 237 AAAAERTPAAGFAA 250
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
534-1118 |
1.48e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 49.29 E-value: 1.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 534 DRLSVLYKEAKEELSALRQESTGSLAPNNLVSCIEKEKERALSDLRRITAEKEALREKLKNIQELnvvgKSELEKTIEHL 613
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKE----VKELEELKEEI 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 614 TYINHQ---LENEKYELQSKILIMKETIESLESKSKLQAQKLSHVTgDSSHQKTEMNSLRIVSEQLQRSLDDCQHRLSIK 690
Cdd:PRK03918 241 EELEKElesLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 691 RGELESAQEQIKaleqKLESLSHRMTMQSEETHAMKKTIGVMdKEKDFLQETVDEKTEKIASLQDSLisKEKAITQLKVT 770
Cdd:PRK03918 320 EEEINGIEERIK----ELEEKEERLEELKKKLKELEKRLEEL-EERHELYEEAKAKKEELERLKKRL--TGLTPEKLEKE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 771 VSECESSLNQLQETLTNRDREINSLRRQLDATHKELDDVGKSREISYKENRRLQDD-----LATMARENQEISLELEAAV 845
Cdd:PRK03918 393 LEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEhrkelLEEYTAELKRIEKELKEIE 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 846 QEKEEMKSRVHKYITEVSRWESLMAakekeNKDLLDRFQMLHNRAEDWEIKAQQAEGEnssvrlELLSIDTERRHLRERV 925
Cdd:PRK03918 473 EKERKLRKELRELEKVLKKESELIK-----LKELAEQLKELEEKLKKYNLEELEKKAE------EYEKLKEKLIKLKGEI 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 926 ELLEKEIQEhinahhayesqISSMAKAMSQLEEELRRHESEKATVLGDVSSLRELCIKLDSGKDIMTHQLNSKGLELERA 1005
Cdd:PRK03918 542 KSLKKELEK-----------LEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDA 610
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 1006 VAELENVKSESELLKKQLMTERQTINSLESLLatnrdkefqSHLTSHEKDTEIQLLKEKLNLSESKLTTQSRETSMLRTK 1085
Cdd:PRK03918 611 EKELEREEKELKKLEEELDKAFEELAETEKRL---------EELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAE 681
|
570 580 590
....*....|....*....|....*....|....*.
gi 564383425 1086 VTQLQTDYDNLKRL---MSNEKYERERAIQELRRLG 1118
Cdd:PRK03918 682 LEELEKRREEIKKTlekLKEELEEREKAKKELEKLE 717
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
696-911 |
2.23e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 2.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 696 SAQEQIKALEQKLESLSHRMTMQSEETHAMKKTIGVMDKEKDFLQETVDEKTEKIASLQDSLISKEKAITQLKVTVSECE 775
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 776 SSLNQLQETLTNRDREINSLRRQLDATH----KELDDVGKSREISYKENRRLQDDLATMARENQEISLELEAAVQEKEEM 851
Cdd:COG4942 97 AELEAQKEELAELLRALYRLGRQPPLALllspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 852 KSRVHKYITEVSRWESLMAAKEKENKDLLDRFQMLHNRAEDWEIKAQQAEGENSSVRLEL 911
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
205-596 |
2.57e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.50 E-value: 2.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 205 RIQELQEEVHQLQEKLAQMEKGVQDYSRQIELREREIERLSVAVDGGR------SPDILSLETRNKTNEKLIAQL----- 273
Cdd:PRK02224 252 ELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLaeagldDADAEAVEARREELEDRDEELrdrle 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 274 ---------NIQVDFLQQANKELERRIQELMETKATVTTEvvnLSNRNEKLCQELTEIDQMAQQLERHKEQVlETADREL 344
Cdd:PRK02224 332 ecrvaaqahNEEAESLREDADDLEERAEELREEAAELESE---LEEAREAVEDRREEIEELEEEIEELRERF-GDAPVDL 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 345 GEAKKEIKRNLSEMRNLEEKMSKLqwELDVSNKEKERLNGELLL---------------------------KSDLETVVH 397
Cdd:PRK02224 408 GNAEDFLEELREERDELREREAEL--EATLRTARERVEEAEALLeagkcpecgqpvegsphvetieedrerVEELEAELE 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 398 QLEQEKQRLNKKLQSfAVTERELTLEVERMRlehgiKRRDKSPSRLDTFLKGIEDERDYYKKELEKLQHL-----IQRRS 472
Cdd:PRK02224 486 DLEEEVEEVEERLER-AEDLVEAEDRIERLE-----ERREDLEELIAERRETIEEKRERAEELRERAAELeaeaeEKREA 559
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 473 CSVIYCAREKppiiKCSEKGDCNSDIHLITRERDELQRMLERFEKyMEDIQSNVKLLTAERDRLSVLYKEAKEELSALR- 551
Cdd:PRK02224 560 AAEAEEEAEE----AREEVAELNSKLAELKERIESLERIRTLLAA-IADAEDEIERLREKREALAELNDERRERLAEKRe 634
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 564383425 552 --QESTGSLAPNNlVSCIEKEKERALSDLRRITAEKEALREKLKNIQ 596
Cdd:PRK02224 635 rkRELEAEFDEAR-IEEAREDKERAEEYLEQVEEKLDELREERDDLQ 680
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
195-372 |
2.95e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 2.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 195 IADLLQVADNRIQELQEEVHQLQEKLAQMEKGVQDYSRQIELREREIERLSVAVDGGRSpdilSLETRNKTNEKLIA--- 271
Cdd:COG4942 39 LEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA----ELEAQKEELAELLRaly 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 272 ------------------QLNIQVDFLQQANKELERRIQELMETKATVTTEVVNLSNRNEKLCQELTEIDQMAQQLERHK 333
Cdd:COG4942 115 rlgrqpplalllspedflDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALK 194
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 564383425 334 ---EQVLETADRELGEAKKEIKRNLSEMRNLEEKMSKLQWEL 372
Cdd:COG4942 195 aerQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
334-891 |
3.35e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 48.36 E-value: 3.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 334 EQVLETADRELGEAKKEIKRNLSEMRNLEEKMSKLQWELDVSNKEKERLNGELLLKSDLETVVHQLEQEKQRLNKKLQSF 413
Cdd:PRK01156 189 EEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSME 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 414 AVTERELT-LEVERMRLEHgikrrdkspsrlDTFLKGIEDERDY--YKKELEKLQHLIQRRSCSViycAREKPPIIKCSE 490
Cdd:PRK01156 269 LEKNNYYKeLEERHMKIIN------------DPVYKNRNYINDYfkYKNDIENKKQILSNIDAEI---NKYHAIIKKLSV 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 491 KGDCNSDIHLITRERDELQRMLERFEKYMEDIQSNVKLLTAERDRLSVLYKEAKEELSALRQESTGSLAPNNLVSCIEKE 570
Cdd:PRK01156 334 LQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNE 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 571 KERAL----SDLRRITAEKEALREKLKNIQE----LN------VVGKSELEKTIEHLtyINHqLENEKYELQSKILIMKE 636
Cdd:PRK01156 414 INVKLqdisSKVSSLNQRIRALRENLDELSRnmemLNgqsvcpVCGTTLGEEKSNHI--INH-YNEKKSRLEEKIREIEI 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 637 TIESLESKSKLQAQKLSHV-TGDSSHQKTEMNSLRIVSEQLQRSLDDcQHRLSIKRGELESAQEQIKALeqKLESLSHRM 715
Cdd:PRK01156 491 EVKDIDEKIVDLKKRKEYLeSEEINKSINEYNKIESARADLEDIKIK-INELKDKHDKYEEIKNRYKSL--KLEDLDSKR 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 716 TmqseETHAMKKTIGVMDKEKdfLQETVDEKTEKIASLQDSLISKEKAITQLKvtvSECESSLNQLQE---TLTNRDREI 792
Cdd:PRK01156 568 T----SWLNALAVISLIDIET--NRSRSNEIKKQLNDLESRLQEIEIGFPDDK---SYIDKSIREIENeanNLNNKYNEI 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 793 NSLRRQLDATHKELDDVGKsrEISYKENRrlQDDLATMARENQEISLELeaavqekEEMKSRVHKYITEVSRWESLMAAK 872
Cdd:PRK01156 639 QENKILIEKLRGKIDNYKK--QIAEIDSI--IPDLKEITSRINDIEDNL-------KKSRKALDDAKANRARLESTIEIL 707
|
570
....*....|....*....
gi 564383425 873 EKENKDLLDRFQMLHNRAE 891
Cdd:PRK01156 708 RTRINELSDRINDINETLE 726
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
638-1083 |
4.08e-05 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 47.89 E-value: 4.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 638 IESLESKSKLQAQKLSHVTGDSSHQKTEMNSLRIVSEQLQRSLDDC-QH------RLSIKRGELESAQEQIKALEQKLES 710
Cdd:pfam10174 277 MEVYKSHSKFMKNKIDQLKQELSKKESELLALQTKLETLTNQNSDCkQHievlkeSLTAKEQRAAILQTEVDALRLRLEE 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 711 LSHRMTMQSEETHAMKKTIGVMDKEKDFLQETVDEKT-------EKIASLQDSLISKEKAITQLKVTV-------SECES 776
Cdd:pfam10174 357 KESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKErkinvlqKKIENLQEQLRDKDKQLAGLKERVkslqtdsSNTDT 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 777 SLNQLQETLTNRDREINSLRRQLDATHKELDDvgkSREISYKENRRLQDDLATMARENQEISLELEAAVQEKEEMKSRVH 856
Cdd:pfam10174 437 ALTTLEEALSEKERIIERLKEQREREDRERLE---ELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGL 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 857 KYITEVSRWESLMAAKEKENKDLLDRFQMLHNRAEDWEIKAQQAEgenssvRLELLSIDTERRhlRERVELLEKEIQEHI 936
Cdd:pfam10174 514 KKDSKLKSLEIAVEQKKEECSKLENQLKKAHNAEEAVRTNPEIND------RIRLLEQEVARY--KEESGKAQAEVERLL 585
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 937 NAHHAYESQISSMAKAMSQLEEELRRHESEKATVLGDVSSLRELCIK------LDSGKDIMTHQLNSKGLELERAVAELE 1010
Cdd:pfam10174 586 GILREVENEKNDKDKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKkgaqllEEARRREDNLADNSQQLQLEELMGALE 665
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 1011 NVKSESELLKKQLMTERQTINSLESLLaTNRDKEFQSHLTS-------------HEKDTEIQLLKeklnLSESKLTTQSR 1077
Cdd:pfam10174 666 KTRQELDATKARLSSTQQSLAEKDGHL-TNLRAERRKQLEEilemkqeallaaiSEKDANIALLE----LSSSKKKKTQE 740
|
....*.
gi 564383425 1078 ETSMLR 1083
Cdd:pfam10174 741 EVMALK 746
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
194-412 |
4.13e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.13 E-value: 4.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 194 YIADLLQVADNRIQELQEEVHQLQEKLAQMEKGVQDYSRQIELREREIERlsvavdggrspdilsLETRNKTNEKLIAQL 273
Cdd:COG3883 13 FADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEA---------------LQAEIDKLQAEIAEA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 274 NIQVDflqQANKELERRIQELMETKATVTTEVVNLSNRNekLCQELTEIDQMAQQLERHKEQV--LETADRELGEAKKEI 351
Cdd:COG3883 78 EAEIE---ERREELGERARALYRSGGSVSYLDVLLGSES--FSDFLDRLSALSKIADADADLLeeLKADKAELEAKKAEL 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564383425 352 KRNLSEMRNLEEKMSKLQWELDVSNKEKERlngellLKSDLETVVHQLEQEKQRLNKKLQS 412
Cdd:COG3883 153 EAKLAELEALKAELEAAKAELEAQQAEQEA------LLAQLSAEEAAAEAQLAELEAELAA 207
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
740-959 |
4.18e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 4.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 740 QETVDEKTEKIASLQDSLISKEKAITQLKVTVSECESSLNQLQETLTNRDREINSLRRQLDATHKELDDVGKSREISYKE 819
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 820 NRRLQDDLATMARENQEISLELEAAV---QEKEEMKSRVHKYITEVSRW-ESLMAAKEKENKDLLDRFQMLHNRAEDWEI 895
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALllsPEDFLDAVRRLQYLKYLAPArREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564383425 896 KAQQAEGENSSVRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSQLEEE 959
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
212-453 |
5.71e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 5.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 212 EVHQLQEKLAQMEKGVQDYSR---QIELREREIERLSVAVDGGRspDILSLETRNKTNEKLIAQLniQVDFLQQANKELE 288
Cdd:COG4913 219 EEPDTFEAADALVEHFDDLERaheALEDAREQIELLEPIRELAE--RYAAARERLAELEYLRAAL--RLWFAQRRLELLE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 289 RRIQELMETKATVTTEVVNLSNRNEKLcqeLTEIDQMAQQLERHKEQVLETADRELGEAKKEIKRNLSEMRNLEEKMSKL 368
Cdd:COG4913 295 AELEELRAELARLEAELERLEARLDAL---REELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAAL 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 369 QWELDVSNKEKERLNGEL-LLKSDLETVVHQLEQEKQRLNKKLQSFAVTERELTLEVERMRlehgiKRRDKSPSRLDTFL 447
Cdd:COG4913 372 GLPLPASAEEFAALRAEAaALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLE-----RRKSNIPARLLALR 446
|
....*.
gi 564383425 448 KGIEDE 453
Cdd:COG4913 447 DALAEA 452
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
674-882 |
6.63e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 6.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 674 EQLQRSLDDCQHRLSIKRGELESAQEQIKALEQKLESLSHRMTMQSEETHAMKKTIGVMDKEKDFLQETVDEKTEKIASL 753
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAEL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 754 QDSLiSKEKAITQLKVTVSecESSLNQLQETLTNRDREINSLRRQLDATHKELDDVGKSREISYKENRRLQDDLATMARE 833
Cdd:COG4942 110 LRAL-YRLGRQPPLALLLS--PEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEE 186
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 564383425 834 NQeislELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENKDLLDR 882
Cdd:COG4942 187 RA----ALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
220-1113 |
7.92e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 46.96 E-value: 7.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 220 LAQMEKGVQDYSRQIELREREIERLSVAVDGGRS--PDILSLETRNKTNEKLIAQLNIQVDFLQQANKELERRIQELMET 297
Cdd:TIGR00606 188 LETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEirDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 298 KATVTTevvnlsnrnekLCQELTEIDQMAQQLERHKEQVLETADRELGEAKKEIKRnlsEMRNLEEKMSKLQWELDVSNK 377
Cdd:TIGR00606 268 DNEIKA-----------LKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQR---TVREKERELVDCQRELEKLNK 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 378 EKERLNGElllKSDLETVVHQLEQEKQRLNKKLQSFAVTERELTLEVERMRLEHGIKRRDKSPSRLDTFLKGIEDERDYY 457
Cdd:TIGR00606 334 ERRLLNQE---KTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTA 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 458 KKELEKLQHLIQRRSCSVIYCAREKPPIIKCSEkgdcnSDIHLITRERDELQ---RMLERFEKYMEDIQSNVKLLTAERD 534
Cdd:TIGR00606 411 AQLCADLQSKERLKQEQADEIRDEKKGLGRTIE-----LKKEILEKKQEELKfviKELQQLEGSSDRILELDQELRKAER 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 535 RLSVLYKEA-----KEELSALRQESTGSLAPNNLVSCIEKEKERALSDLRRITAEKEALREKLKNIQELNVVGKSELEKT 609
Cdd:TIGR00606 486 ELSKAEKNSltetlKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSL 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 610 IEHLTYiNHQLENEKYELQSKILIMKETIESLESKSKLQAQKLSHVTGDSSHQKTEMNSLrivSEQLQR--SLDDCQHRL 687
Cdd:TIGR00606 566 LGYFPN-KKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSY---EDKLFDvcGSQDEESDL 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 688 SIKRGELESAQEQIKALEQKLESLSHRMTMQSEETHAMKKTIGVMDKEKDFLQETVDEKTEKIASLQDSLISKEKAITQL 767
Cdd:TIGR00606 642 ERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKK 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 768 KVTVSEC--------------ESSLNQLQETLTNRDREINSLRRQLDATHKELDDVGKSREIS-------------YKEN 820
Cdd:TIGR00606 722 EKRRDEMlglapgrqsiidlkEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAkvcltdvtimerfQMEL 801
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 821 RRLQDDLATMARENQEISLELeAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENKdlldrfQMLHNRAEDWEIKAQqa 900
Cdd:TIGR00606 802 KDVERKIAQQAAKLQGSDLDR-TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQE------QIQHLKSKTNELKSE-- 872
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 901 egenssvRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSQL----EEELRRHESEKATVLGDVSS 976
Cdd:TIGR00606 873 -------KLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDqqekEELISSKETSNKKAQDKVND 945
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 977 LRE-----------LCIKLDSGKDimtHQLNSKGLELERAVAELENVKSESELLKKQLMTERQTINSlesllATNRDKEF 1045
Cdd:TIGR00606 946 IKEkvknihgymkdIENKIQDGKD---DYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDT-----QKIQERWL 1017
|
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564383425 1046 QSHLTSHEKDTEIQLLKEKLNLSESKLtTQSRETSMlRTKVTQLQTDYDNLKR-----LMSNEKYERERAIQE 1113
Cdd:TIGR00606 1018 QDNLTLRKRENELKEVEEELKQHLKEM-GQMQVLQM-KQEHQKLEENIDLIKRnhvlaLGRQKGYEKEIKHFK 1088
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
186-294 |
8.80e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 46.77 E-value: 8.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 186 PVPQPEDPYIADLLQVADNRIQELQEEVHQLQEKLAQMEKGVQDYSRQIELREREIERLSVAVDGGRSPDILSLETRNKT 265
Cdd:COG2433 388 KELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARSEERREIRKDREI 467
|
90 100 110
....*....|....*....|....*....|.
gi 564383425 266 N--EKLIAQLNIQVDFLQQANKELERRIQEL 294
Cdd:COG2433 468 SrlDREIERLERELEEERERIEELKRKLERL 498
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
190-386 |
9.73e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 9.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 190 PEDPYI----ADLLQVADNRIQELQEEVHQLQEKLAQMEKGVQDYSRQIELREREIERLSVAVdggrspDILSLETRnkt 265
Cdd:COG4913 599 RSRYVLgfdnRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEI------DVASAERE--- 669
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 266 neklIAQLNIQVDFLQQAN---KELERRIQELMETKATVTTEVVNLSNRNEKLCQELTEIDQMAQQLERHKEQVLETADR 342
Cdd:COG4913 670 ----IAELEAELERLDASSddlAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARL 745
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 564383425 343 ELGEAKKEIKRNLSEMRNLEEKMSKLQWELDVSNKEKERLNGEL 386
Cdd:COG4913 746 ELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEEL 789
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
199-376 |
1.07e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.98 E-value: 1.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 199 LQVADNRIQELQEEVHQLQEKLAQMEKGVQDYSRQIELREREIERLSVAVD--------GGRSPDILSLETRNKTNEKLI 270
Cdd:COG3883 39 LDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGeraralyrSGGSVSYLDVLLGSESFSDFL 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 271 AQLNIqVDFLQQANKELerrIQELMETKATVTTEVVNLSNRNEKLCQELTEIDQMAQQLERHKEQ---VLETADRELGEA 347
Cdd:COG3883 119 DRLSA-LSKIADADADL---LEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEqeaLLAQLSAEEAAA 194
|
170 180
....*....|....*....|....*....
gi 564383425 348 KKEIKRNLSEMRNLEEKMSKLQWELDVSN 376
Cdd:COG3883 195 EAQLAELEAELAAAEAAAAAAAAAAAAAA 223
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
264-1117 |
1.13e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.50 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 264 KTNEKLIAQLNIQVDFLQQANKELERRIQELMETKATVTTEVVNLSNRNEKLCQELTEIDQMAQQLERHKEQVLETADRE 343
Cdd:pfam02463 180 EETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 344 LGEAKKEIKRNLSEMRNLEEKMSKLQWELDVSNKEKERLNGELLLKSDLETVVHQLEQEKQRLNKKLQSFAVTERELTLE 423
Cdd:pfam02463 260 IEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEE 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 424 VERMRLEHGIKRRDKSPSRLDTFLKGIEDERDyyKKELEKLQHLIQRRSCSVIYCAREKPPIIKCSEKGDCNSDIHLITR 503
Cdd:pfam02463 340 LEKELKELEIKREAEEEEEEELEKLQEKLEQL--EEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQL 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 504 E---RDELQRMLERFEKYMEDIQSNVKLLTAERDRLSVLYKEAKEELSALRQESTGSLAPNNLVSCIEKEKERALSDLRR 580
Cdd:pfam02463 418 EdllKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEE 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 581 ITAEKEALREKLKNIQELNVVGKSELEKTIEHLTYINHQLENEKYELQSKILIMKETIESLESKSKLQAQKLSHVTGDSS 660
Cdd:pfam02463 498 RSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGA 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 661 HQKTEMNSLRIVSEQLQRSLDDCQHRLSIKRGELESAQEQIKALEQKLESLSHRMTMQSEETHAMKKTIGVMDKEKDFLQ 740
Cdd:pfam02463 578 RKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEG 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 741 ETVDEKTEKIASLQDSLISKEKAITQLKVTVSECESSLNQLQETLTNRDREINSLRRQLDAthKELDDVGKSREISYKEN 820
Cdd:pfam02463 658 LAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLE--AEELLADRVQEAQDKIN 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 821 RRLQDDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENKDLLDRFQMLHNRAEDWEIKAQQA 900
Cdd:pfam02463 736 EELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAE 815
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 901 EGENSSVRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQissmakaMSQLEEELRRHESEKATVLGDVSSLREL 980
Cdd:pfam02463 816 LLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLE-------EEITKEELLQELLLKEEELEEQKLKDEL 888
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 981 CIKLDSGKDImtHQLNSKGLELERAVAELENVKSESELLKKQLMTERQTINsLESLLATNRDKEFQSHLTSHEKDTEIQL 1060
Cdd:pfam02463 889 ESKEEKEKEE--KKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEP-EELLLEEADEKEKEENNKEEEEERNKRL 965
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*..
gi 564383425 1061 LKEKLNLSESKLttqsretsMLRTKVTQLQTDYDNLKRLMSNEKYERERAIQELRRL 1117
Cdd:pfam02463 966 LLAKEELGKVNL--------MAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEE 1014
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
772-1117 |
1.29e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.21 E-value: 1.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 772 SECESSLNQLQETLTNRDR---EINSLRRQLDATHKELDDVGKSREISykenRRLQDdlatmaRENQEISLELEAAVQEK 848
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERldlIIDEKRQQLERLRREREKAERYQALL----KEKRE------YEGYELLKEKEALERQK 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 849 EEMKSRVHKYITEVSRWESLMAAKEKENKDLLDRFQMLHNRAEDweikaqQAEGENSSVRLELLSIDTERRHLRERVELL 928
Cdd:TIGR02169 240 EAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKD------LGEEEQLRVKEKIGELEAEIASLERSIAEK 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 929 EKEIQEHINAHHAYESQISSMAKAMSQLEEELRRHESEKATVLGDVSSLRELCIKLDSgkdimthQLNSKGLELERAVAE 1008
Cdd:TIGR02169 314 ERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRA-------ELEEVDKEFAETRDE 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 1009 LENVKSESELLKKQlmterqtINSLESLLATNRDKEFQSHLTSHEKDTEIQLLKEKLNLSESKLTTQSRETSMLRTKVTQ 1088
Cdd:TIGR02169 387 LKDYREKLEKLKRE-------INELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQ 459
|
330 340
....*....|....*....|....*....
gi 564383425 1089 LQTDYDNLKRLMSNEKYERERAIQELRRL 1117
Cdd:TIGR02169 460 LAADLSKYEQELYDLKEEYDRVEKELSKL 488
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
498-1023 |
1.64e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.83 E-value: 1.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 498 IHLITRERDELQRMLERFEKYMEDIQSNVKLLTA---ERDRLSVLYKEAKEELSALRQESTGSLAPNNLVSCIEKEKERA 574
Cdd:PRK03918 171 IKEIKRRIERLEKFIKRTENIEELIKEKEKELEEvlrEINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESL 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 575 LSDLRRITAEKEALREKLKNIQElnvvGKSELEKTIEHLTYInhQLENEKY----ELQSKILIMKETIESLESKSKLQAQ 650
Cdd:PRK03918 251 EGSKRKLEEKIRELEERIEELKK----EIEELEEKVKELKEL--KEKAEEYiklsEFYEEYLDELREIEKRLSRLEEEIN 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 651 KLSHVTGDSSHQKTEMNSLRIVSEQLQRSLDDCQhrlsikrgELESAQEQIKALEQKLESLSHRMTMQSEEThaMKKTIG 730
Cdd:PRK03918 325 GIEERIKELEEKEERLEELKKKLKELEKRLEELE--------ERHELYEEAKAKKEELERLKKRLTGLTPEK--LEKELE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 731 VMDKEKDFLQETVDEKTEKIASLQDSLISKEKAITQLKVTVSECESSLNQLQE---------------TLTNRDREINSL 795
Cdd:PRK03918 395 ELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEehrkelleeytaelkRIEKELKEIEEK 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 796 RRQLDATHKELDDVgKSREISYKENRRLQDDLATMARENQEISLE-LEAAVQEKEEMKSRVHKYITEVSR---------- 864
Cdd:PRK03918 475 ERKLRKELRELEKV-LKKESELIKLKELAEQLKELEEKLKKYNLEeLEKKAEEYEKLKEKLIKLKGEIKSlkkeleklee 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 865 WESLMAAKEKENKDLLDRFQMLHNRAEDWEIKA-QQAEGENSSVR------LELLSIDTERRHLRERVELLEKEIQEHIN 937
Cdd:PRK03918 554 LKKKLAELEKKLDELEEELAELLKELEELGFESvEELEERLKELEpfyneyLELKDAEKELEREEKELKKLEEELDKAFE 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 938 AHHAYESQISSMAKAMSQL-----EEELRRHESEKATVLGDVSSLRELCIKLDSGKDIMTHQLNskglELERAVAELENV 1012
Cdd:PRK03918 634 ELAETEKRLEELRKELEELekkysEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLE----KLKEELEEREKA 709
|
570
....*....|.
gi 564383425 1013 KSESELLKKQL 1023
Cdd:PRK03918 710 KKELEKLEKAL 720
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
635-844 |
2.07e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 2.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 635 KETIESLESKSKLQAQKLSHVTGDSSHQKTEMNSLRIVSEQLQRSLDDCQHRLSIKRGELESAQEQIKALEQKLESLSHR 714
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 715 MT------------------MQSEETHAMKKTIGVMDKEKDFLQETVDEKTEKIASLQDSLISKEKAITQLKVTVSECES 776
Cdd:COG4942 106 LAellralyrlgrqpplallLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEE 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564383425 777 SLNQLQETLTNRDREINSLRRQLDATHKELDDVGKSREisykenrRLQDDLATMARENQEISLELEAA 844
Cdd:COG4942 186 ERAALEALKAERQKLLARLEKELAELAAELAELQQEAE-------ELEALIARLEAEAAAAAERTPAA 246
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
796-1042 |
2.13e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.42 E-value: 2.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 796 RRQLDATHKELDDVGKsrEISYKENRRLQDDLATMARENQEISLELE-------AAVQEKEEMKSRVHKYI--------- 859
Cdd:PRK02224 179 ERVLSDQRGSLDQLKA--QIEEKEEKDLHERLNGLESELAELDEEIEryeeqreQARETRDEADEVLEEHEerreeletl 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 860 -TEVSRWESLMAAKEKENKDLLDRFQMLHNRAEDWEIKAQQAEGENSSVRLELLSIDTERRHLRERVELLEKEIQEHINA 938
Cdd:PRK02224 257 eAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 939 HHAYESQISSMAKAMSQLEEELRRHESEKATVLGDVSSLRELCIKLDSGKDIMTHQLNSKGLELERAVAELENVKSESEL 1018
Cdd:PRK02224 337 AQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEE 416
|
250 260
....*....|....*....|....
gi 564383425 1019 LKKQLMTERQTINSLESLLATNRD 1042
Cdd:PRK02224 417 LREERDELREREAELEATLRTARE 440
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
750-968 |
2.72e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.82 E-value: 2.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 750 IASLQDSLISKEKAITQLKVTVSECESSLNQLQETLTNRDREINSLRRQLDATHKELDDVGKsrEISYKENR--RLQDDL 827
Cdd:COG3883 11 PAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQA--EIAEAEAEieERREEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 828 ATMARENQEISleleaavqekeemksrvhkyiTEVSRWESLMAAKEKEnkDLLDRFQML-----HNRAEDWEIKAQQAEg 902
Cdd:COG3883 89 GERARALYRSG---------------------GSVSYLDVLLGSESFS--DFLDRLSALskiadADADLLEELKADKAE- 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564383425 903 enssvrlellsIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSQLEEELRRHESEKA 968
Cdd:COG3883 145 -----------LEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLA 199
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
528-1022 |
3.98e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.72 E-value: 3.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 528 LLTAERDRLSVLYKEAKEELSALRQESTGSLA-PNNLVSCIEKEKERA----------LSDLRRITAE-----KEALREK 591
Cdd:pfam15921 261 LLQQHQDRIEQLISEHEVEITGLTEKASSARSqANSIQSQLEIIQEQArnqnsmymrqLSDLESTVSQlrselREAKRMY 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 592 LKNIQELN---VVGKSELEKTIEHLTYINHQLENEKYELQSKILIMKETIESLESKSKLQAQKLSHVTGDS---SHQKTE 665
Cdd:pfam15921 341 EDKIEELEkqlVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSitiDHLRRE 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 666 MNSLRIVSEQLQRSL----DDCQHRLSIKRGELESAQE---QIKALEQKLESLSHRMTMQSEETHAMKKTIGVMDKEKDF 738
Cdd:pfam15921 421 LDDRNMEVQRLEALLkamkSECQGQMERQMAAIQGKNEsleKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSD 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 739 LQETVDEKtEKIASLQDSLISKEKAITQLKVT-----------VSECESSLNQLQETLTNRDREINSLRRQLDATHKELD 807
Cdd:pfam15921 501 LTASLQEK-ERAIEATNAEITKLRSRVDLKLQelqhlknegdhLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVG 579
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 808 DVGKSREISYKENRRLQDDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRW-----ESLMAAKE--KENKDLL 880
Cdd:pfam15921 580 QHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLvnagsERLRAVKDikQERDQLL 659
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 881 DRFQM----LHNRAEDWEI-------KAQQAEGENSSVRLELLSIDTERRHLRERVELLEKE----------IQEHINAH 939
Cdd:pfam15921 660 NEVKTsrneLNSLSEDYEVlkrnfrnKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSdghamkvamgMQKQITAK 739
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 940 H----AYESQISSMAKAM--------------SQLEEELRRHESEKATVLGDVSSLRELCIKLDSGKDIMTHQLNSKGLE 1001
Cdd:pfam15921 740 RgqidALQSKIQFLEEAMtnankekhflkeekNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQ 819
|
570 580
....*....|....*....|.
gi 564383425 1002 LERAVAELENVKSESELLKKQ 1022
Cdd:pfam15921 820 FAECQDIIQRQEQESVRLKLQ 840
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
194-421 |
4.10e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.62 E-value: 4.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 194 YIADLLQV----ADNRIQELQEEVHQLQEKLAQMEKGVQDYSRQIelrereierlsvavdggrspDILSLETRNKTNEKL 269
Cdd:COG3206 161 YLEQNLELrreeARKALEFLEEQLPELRKELEEAEAALEEFRQKN--------------------GLVDLSEEAKLLLQQ 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 270 IAQLNIQVDFLQQANKELERRIQELMETKATVTTEVVNLSNrneklcqelteiDQMAQQLErhkeQVLETADRELGEAKK 349
Cdd:COG3206 221 LSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQ------------SPVIQQLR----AQLAELEAELAELSA 284
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564383425 350 EIKRNLSEMRNLEEKMSKLQWELdvsnkEKERLNGELLLKSDLETV---VHQLEQEKQRLNKKLQSFAVTERELT 421
Cdd:COG3206 285 RYTPNHPDVIALRAQIAALRAQL-----QQEAQRILASLEAELEALqarEASLQAQLAQLEARLAELPELEAELR 354
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
503-1095 |
4.42e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.44 E-value: 4.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 503 RERDELQRMLE---RFEKYMEDIQSnVKLLTAERDRLSVLYKEAkEELSALRQE--STGSLAPNNLVSCIEKEKERALSD 577
Cdd:pfam12128 228 RDIQAIAGIMKirpEFTKLQQEFNT-LESAELRLSHLHFGYKSD-ETLIASRQEerQETSAELNQLLRTLDDQWKEKRDE 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 578 LRritAEKEALREKLKNIQElnvvgksELEKTIE-HLTYINHQLENEKYELQSKILIMKEtIESLESKSKLQAQKLSHVT 656
Cdd:pfam12128 306 LN---GELSAADAAVAKDRS-------ELEALEDqHGAFLDADIETAAADQEQLPSWQSE-LENLEERLKALTGKHQDVT 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 657 gdsshQKTEMNSLRIvSEQLQRSLDDCQHRLSIKRGELESAQEQIKALEQKLES-LSHRMTMQSEETHAMKKTIgvmdke 735
Cdd:pfam12128 375 -----AKYNRRRSKI-KEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESeLREQLEAGKLEFNEEEYRL------ 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 736 kdflqetvDEKTEKIASLQDSLISKEKAITQLKVTVSECESSlnqlQETLTNRDREINSLRRQLDATHKELDdvgksrei 815
Cdd:pfam12128 443 --------KSRLGELKLRLNQATATPELLLQLENFDERIERA----REEQEAANAEVERLQSELRQARKRRD-------- 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 816 syKENRRLQDdlatmarENQEIsLELEAAVQEKEEM-----KSRVHKYITEVSRWESLMAAkekenkdLLDRfQMLHNRA 890
Cdd:pfam12128 503 --QASEALRQ-------ASRRL-EERQSALDELELQlfpqaGTLLHFLRKEAPDWEQSIGK-------VISP-ELLHRTD 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 891 EDWEIKAQQAEGENS--SVRLELLSIDTERRH-----LRERVELLEKEIQEHINAHHAYESQissMAKAMSQLEEELRRH 963
Cdd:pfam12128 565 LDPEVWDGSVGGELNlyGVKLDLKRIDVPEWAaseeeLRERLDKAEEALQSAREKQAAAEEQ---LVQANGELEKASREE 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 964 ESEKATVLGDVSSLRELCIKLDSGKDIMTHQLNSkglELERAVAELENVKSESELLKKQLMTERQTINSLESLLATNRDK 1043
Cdd:pfam12128 642 TFARTALKNARLDLRRLFDEKQSEKDKKNKALAE---RKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQA 718
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 564383425 1044 EFQShlTSHEKDTEIQLLKEKLNLSESKLTTQsretsmlrtkVTQLQTDYDN 1095
Cdd:pfam12128 719 YWQV--VEGALDAQLALLKAAIAARRSGAKAE----------LKALETWYKR 758
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
696-882 |
4.82e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.05 E-value: 4.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 696 SAQEQIKALEQKLESLSHRMTMQSEETHAMKKTIGVMDKEKDFLQETVDEKTEKIASLQDSLISKEKAITQLKVTVSE-- 773
Cdd:COG3883 13 FADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEra 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 774 -----CESSLNQLQETLTNRD-----REINSLRRQLDATHKELDDVGKSREISYKENRRLQDDLATMARENQEISLELEA 843
Cdd:COG3883 93 ralyrSGGSVSYLDVLLGSESfsdflDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAE 172
|
170 180 190
....*....|....*....|....*....|....*....
gi 564383425 844 AVQEKEEMKSRVHKYITEVSRWESLMAAKEKENKDLLDR 882
Cdd:COG3883 173 LEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
197-395 |
4.96e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 4.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 197 DLLQVADNRIQELQEEVHQLQEKLAQMEKGVQDYSRQIELREREIERLSVAVdggrspDILSLETRNKTNEKLIAQLNIQ 276
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLL------QLLPLYQELEALEAELAELPER 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 277 VDFLQQANKELERRIQELMETKAtvttevvnlsnrneklcqeltEIDQMAQQLERHKEQVLETADRELGEAKKEIKRNLS 356
Cdd:COG4717 148 LEELEERLEELRELEEELEELEA---------------------ELAELQEELEELLEQLSLATEEELQDLAEELEELQQ 206
|
170 180 190
....*....|....*....|....*....|....*....
gi 564383425 357 EMRNLEEKMSKLQWELDVSNKEKERLNGELLLKSDLETV 395
Cdd:COG4717 207 RLAELEEELEEAQEELEELEEELEQLENELEAAALEERL 245
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
260-859 |
5.93e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.94 E-value: 5.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 260 ETRNKTNEKLIAQLNIQVDFLQQANKELERRIQELMETKATVTTEvvnlSNRNEKLCQELTEidQMAQQLERHKEQVLEt 339
Cdd:pfam05483 105 ENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKE----NNATRHLCNLLKE--TCARSAEKTKKYEYE- 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 340 adrelgeaKKEIKRNLSEMRNLEEKMSKLQWELDVsNKEKERLNGELLLKSDLETVVHQLEQEKQRLNKK-----LQSFA 414
Cdd:pfam05483 178 --------REETRQVYMDLNNNIEKMILAFEELRV-QAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKekqvsLLLIQ 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 415 VTERELTLEVERMRLEHG---IKRRDKSPSRLDTFLKGIEDERDYYKKELEKLQHLIQRrSCSVIYCAREKPPIIK---C 488
Cdd:pfam05483 249 ITEKENKMKDLTFLLEESrdkANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQR-SMSTQKALEEDLQIATktiC 327
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 489 SEKGDCNSDIHLITRERDELQRMLERFEKYMEDIQsnvKLLTAERDRLsvlyKEAKEELSALRQESTGSLAPNNLVSCIE 568
Cdd:pfam05483 328 QLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLE---ELLRTEQQRL----EKNEDQLKIITMELQKKSSELEEMTKFK 400
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 569 KEKERALSDLRRITAEKEALREKLKNIQELnvvgKSELEKTIEHLTYINHQLENEKYELQSKILIMKETIESLESKSKLQ 648
Cdd:pfam05483 401 NNKEVELEELKKILAEDEKLLDEKKQFEKI----AEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDL 476
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 649 AQKLSHVTGDSSHQKTEMNSLRIVSEQLQRSLDDCQHRLSIKRGELESAQEQIKALEQKLESLSHRMTMQSEETHAMKKT 728
Cdd:pfam05483 477 KTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREE 556
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 729 igvMDKEKDFLQETVDEKTEKIASLQDSLISKEKaitQLKVTVSECesslnqlqetltnrdreiNSLRRQLDATHKELDD 808
Cdd:pfam05483 557 ---FIQKGDEVKCKLDKSEENARSIEYEVLKKEK---QMKILENKC------------------NNLKKQIENKNKNIEE 612
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 564383425 809 VGKSREISYKENRRLQDDLATMARENQEISLELEAAVQEKEEMKSRVHKYI 859
Cdd:pfam05483 613 LHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEI 663
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
685-879 |
7.31e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 43.91 E-value: 7.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 685 HRLSIKRGELESAQEQIKAL------EQKLESLSHRMTMQSEETHAMKKTIGVMDKEKDFL---QETVDEKTEKIASLQD 755
Cdd:COG5022 803 LSLLGSRKEYRSYLACIIKLqktikrEKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLlkkETIYLQSAQRVELAER 882
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 756 SLISKEKA---ITQLKVTVSECESSLNQLQETLTNRDREINSLRRQLDATHKEL---DDVGKSREISYKENRRLQDDLAT 829
Cdd:COG5022 883 QLQELKIDvksISSLKLVNLELESEIIELKKSLSSDLIENLEFKTELIARLKKLlnnIDLEEGPSIEYVKLPELNKLHEV 962
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 564383425 830 MaRENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENKDL 879
Cdd:COG5022 963 E-SKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGAL 1011
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
582-850 |
7.43e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 43.46 E-value: 7.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 582 TAEKEALREKLKNIQ---ELNVVGKSELEKTIEHLTYINHQLENekyeLQSKILIMKETIESLESKSKLQAQKlshvtgd 658
Cdd:PHA02562 149 APARRKLVEDLLDISvlsEMDKLNKDKIRELNQQIQTLDMKIDH----IQQQIKTYNKNIEEQRKKNGENIAR------- 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 659 ssHQKtemnslrIVSEQLQRSLDdcqhrlsIKrGELESAQEQIKALEQKLESLSHRMTMQSEETHAMKKTIGVMDKEKDF 738
Cdd:PHA02562 218 --KQN-------KYDELVEEAKT-------IK-AEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKM 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 739 LQE---------TVDEKTEKIASLQDSLISKEKAITQLK---VTVSECESSLNQLQETLTNRDREINSLRRQLDATHKEL 806
Cdd:PHA02562 281 YEKggvcptctqQISEGPDRITKIKDKLKELQHSLEKLDtaiDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKA 360
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 564383425 807 DDVGKSREISYKENRRLQDDLATMARENQEISLELEAAVQEKEE 850
Cdd:PHA02562 361 KKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYH 404
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
485-711 |
1.02e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 43.38 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 485 IIKCSEKGDcNSDIHLITRERDELQRMLERFEKYMEDIQSNVKLL-TAERDRLSVLYKEAKEELSALRQEstgslapnnl 563
Cdd:PRK05771 33 IEDLKEELS-NERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKkKVSVKSLEELIKDVEEELEKIEKE---------- 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 564 VSCIEKEKERALSDLRRITAEKEALrEKLKNIqELNVvgksELEKTIEHLTYINHQLENEKYELQSKILIMKETIESLES 643
Cdd:PRK05771 102 IKELEEEISELENEIKELEQEIERL-EPWGNF-DLDL----SLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTD 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564383425 644 K---------SKLQAQKLSHVTGDSSHQKTEMNSLRIVSEQLQRSLDdcqhRLSIKRGELESAQEQIKALEQKLESL 711
Cdd:PRK05771 176 KgyvyvvvvvLKELSDEVEEELKKLGFERLELEEEGTPSELIREIKE----ELEEIEKERESLLEELKELAKKYLEE 248
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
244-470 |
1.04e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 244 LSVAVDGGRSPDILSLETRNKTNEKLIAQLNIQVDFLQQANKELERRIQELMETKATVTTEVVNLSNRNEKLCQELTEID 323
Cdd:COG4942 10 LLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 324 QMAQQLERHKEQVLETADRELGEAKKEIKRNLSEM----RNLEEKMSKLQWELDVSNKEKERLNGELLLKSDLETVVHQL 399
Cdd:COG4942 90 KEIAELRAELEAQKEELAELLRALYRLGRQPPLALllspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564383425 400 EQEKQRLNKKLQsfavterelTLEVERMRLEHGIKRRDKSPSRLDTFLKGIEDERDYYKKELEKLQHLIQR 470
Cdd:COG4942 170 EAERAELEALLA---------ELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
505-1115 |
1.25e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.18 E-value: 1.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 505 RDELQRMLERFEKYMEDIQSNVKLLTAERDRLSVLYKEAKEELSALRQEstgslapnnlvscIEKEKERALSDLRRITAE 584
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQE-------------MQMERDAMADIRRRESQS 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 585 KEALREKLKNIQELNVVGKSELEKTIEHltyINHQLENEKYELQSKILIMKETIESLESksklqaqkLSHVTGDSSHQKT 664
Cdd:pfam15921 140 QEDLRNQLQNTVHELEAAKCLKEDMLED---SNTQIEQLRKMMLSHEGVLQEIRSILVD--------FEEASGKKIYEHD 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 665 EMNSL--RIVSEQLQRSLDDCQHRLSIKRGELESAQEQIKALeqKLESLSHRMTMQSEETHAMKKTIGVMDKEKDFLQET 742
Cdd:pfam15921 209 SMSTMhfRSLGSAISKILRELDTEISYLKGRIFPVEDQLEAL--KSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEK 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 743 VDEKTEKIASLQDSL-ISKEKAITQLKV---TVSECESSLNQLQETLTNRDR----EINSLRRQLDATHKELDDVGKSRE 814
Cdd:pfam15921 287 ASSARSQANSIQSQLeIIQEQARNQNSMymrQLSDLESTVSQLRSELREAKRmyedKIEELEKQLVLANSELTEARTERD 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 815 ISYKENRRLQDDL----ATMARENQEISLELEaavQEKEEMKSRVHKYIT-------------EVSRWESLMAAKEKENK 877
Cdd:pfam15921 367 QFSQESGNLDDQLqkllADLHKREKELSLEKE---QNKRLWDRDTGNSITidhlrrelddrnmEVQRLEALLKAMKSECQ 443
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 878 DLLDRfqmlhnraedweiKAQQAEGENSSvrleLLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSQLE 957
Cdd:pfam15921 444 GQMER-------------QMAAIQGKNES----LEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQ 506
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 958 EELRRHESEKATVlgdvsslrelcIKLDSGKDIMTHQLNskglELERAVAELENVKSESELLKKQLMTE-------RQTI 1030
Cdd:pfam15921 507 EKERAIEATNAEI-----------TKLRSRVDLKLQELQ----HLKNEGDHLRNVQTECEALKLQMAEKdkvieilRQQI 571
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 1031 NSLESLLA--------------------TNRDKEFQS-HLTSHEKDTEIQLLKEK---LNLSESKLTT------------ 1074
Cdd:pfam15921 572 ENMTQLVGqhgrtagamqvekaqlekeiNDRRLELQEfKILKDKKDAKIRELEARvsdLELEKVKLVNagserlravkdi 651
|
650 660 670 680
....*....|....*....|....*....|....*....|....*..
gi 564383425 1075 -QSR-----ETSMLRTKVTQLQTDYDNLKRLMSNEKYERERAIQELR 1115
Cdd:pfam15921 652 kQERdqllnEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLK 698
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
740-1117 |
1.39e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.79 E-value: 1.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 740 QETVDEKTEKIASLQDSLISKEKAITQLKVTVSECESSLNQLQETLTNRDREINSLRRQLDATHKELDDVGKSREISYKE 819
Cdd:pfam05483 232 KKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMST 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 820 NRRLQDDLATMARENQEISLELEAAVQEKEEMKSRVHKYITE----VSRWESLMAAKEKENKDLLDRFQML--HNRAEDW 893
Cdd:pfam05483 312 QKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEfeatTCSLEELLRTEQQRLEKNEDQLKIItmELQKKSS 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 894 EIKAQQAEGENSSVRLE-----------LLSIDTERRHLRERVELLEKEIQEHINAH----HAYESQISSMAKAMSQLEE 958
Cdd:pfam05483 392 ELEEMTKFKNNKEVELEelkkilaedekLLDEKKQFEKIAEELKGKEQELIFLLQARekeiHDLEIQLTAIKTSEEHYLK 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 959 ELRRHESEKATVLGDVSSLRELCIKLDSGKDIMTHQLNSKGLELERAVAELENVKSESELLKKQLMTERQTINSLESLLA 1038
Cdd:pfam05483 472 EVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELE 551
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564383425 1039 TNRDKEFQSHltshekdteiQLLKEKLNLSESKLTTQSRETSMLRTKVTQLQTDYDNLKRLMSNEKYERERAIQELRRL 1117
Cdd:pfam05483 552 SVREEFIQKG----------DEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKAL 620
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
568-784 |
1.48e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.51 E-value: 1.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 568 EKEKERALSDLRRITAEKEALREKLKNIQElnvvgksELEKTIEHLTYINHQLEnekyELQSKILIMKETIESLESKSKL 647
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQA-------ELEELNEEYNELQAELE----ALQAEIDKLQAEIAEAEAEIEE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 648 QAQKLSHVTGDSSHQKTEMNSLRIVSEqlQRSLDDCQHRLSIKRGELESAQEQIKALEQKLESLSHRMTMQSEETHAMKK 727
Cdd:COG3883 84 RREELGERARALYRSGGSVSYLDVLLG--SESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEA 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 564383425 728 TIGVMDKEKDFLQETVDEKTEKIASLQDSLISKEKAITQLKVTVSECESSLNQLQET 784
Cdd:COG3883 162 LKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAA 218
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
691-861 |
1.49e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 1.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 691 RGELESAQEQIKALEQKLEslshrmtmQSEETHAMKKTIGVMDKEKD-----FLQETVDEKTEKIASLQDSLISKEKAIT 765
Cdd:COG4913 241 HEALEDAREQIELLEPIRE--------LAERYAAARERLAELEYLRAalrlwFAQRRLELLEAELEELRAELARLEAELE 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 766 QLKVTVSECESSLNQLQETLTNRD-REINSLRRQLDATHKELDDVGKSREiSYKEN-RRLQDDLATMARENQEISLELEA 843
Cdd:COG4913 313 RLEARLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEERERRRA-RLEALlAALGLPLPASAEEFAALRAEAAA 391
|
170
....*....|....*...
gi 564383425 844 AVQEKEEMKSRVHKYITE 861
Cdd:COG4913 392 LLEALEEELEALEEALAE 409
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
199-367 |
1.58e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.45 E-value: 1.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 199 LQVADNRIQELQEEVHQLQEKLAQMEKGVQDYSRQIELREREIERLSVAVDGGRSpDILSLETRNKTNEKLIAQ------ 272
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLEL-EIEEVEARIKKYEEQLGNvrnnke 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 273 ---LNIQVDFLQQANKELERRIQELMEtkatvttevvnlsnRNEKLCQELTEIDQMAQQLERHKEQVLETADRELGEAKK 349
Cdd:COG1579 91 yeaLQKEIESLKRRISDLEDEILELME--------------RIEELEEELAELEAELAELEAELEEKKAELDEELAELEA 156
|
170
....*....|....*...
gi 564383425 350 EIKRNLSEMRNLEEKMSK 367
Cdd:COG1579 157 ELEELEAEREELAAKIPP 174
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
600-1109 |
1.62e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.74 E-value: 1.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 600 VVGKSELEKTIEHLTYINHQLENEKYELQSKILIMKETIESLESKSKLQAQKLSHVTGDSSHQKTEMNSLRIVSEQLQRs 679
Cdd:PRK03918 154 ILGLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKE- 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 680 LDDCQHRLSIKRGELESAQEQIKALEQKLESLSHRMTMQSEETHAMKKTIGVMDKEKDflqetVDEKTEKIASLQDSLIS 759
Cdd:PRK03918 233 LEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKE-----KAEEYIKLSEFYEEYLD 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 760 KEKAITQLKVTVSECESSLNQLQETLTNRDREINSLRRQLDATHKELDDVgKSREISYKENRRLQDDLATMARENQEISL 839
Cdd:PRK03918 308 ELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEEL-EERHELYEEAKAKKEELERLKKRLTGLTP 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 840 E-LEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENKDLLDRFQM------LHNRAEDWEIKAQQAE---GENSSVRL 909
Cdd:PRK03918 387 EkLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKakgkcpVCGRELTEEHRKELLEeytAELKRIEK 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 910 ELLSIDTERRHLRERVELLEKEIQEhinahhayESQIS---SMAKAMSQLEEELRRHESEKATVLG-DVSSLRELCIKLD 985
Cdd:PRK03918 467 ELKEIEEKERKLRKELRELEKVLKK--------ESELIklkELAEQLKELEEKLKKYNLEELEKKAeEYEKLKEKLIKLK 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 986 SGKDIMTHQLNsKGLELERAVAELENVKSESELLKKQLMTE--RQTINSLESLLATNRDKE--FQSHLTSHEKDTEIQLL 1061
Cdd:PRK03918 539 GEIKSLKKELE-KLEELKKKLAELEKKLDELEEELAELLKEleELGFESVEELEERLKELEpfYNEYLELKDAEKELERE 617
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 564383425 1062 KEKLNLSESKLTTQSRETSMLRTKVTQLQTDYDNLKRLMSNEKYERER 1109
Cdd:PRK03918 618 EKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELR 665
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
506-960 |
1.86e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.47 E-value: 1.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 506 DELQRMLER---FEKYMEDIQSNVKLLTAERDRL-------SVLYKEAKE---ELSALRQESTGSLapNNLVSCIEKEKE 572
Cdd:pfam01576 12 EELQKVKERqqkAESELKELEKKHQQLCEEKNALqeqlqaeTELCAEAEEmraRLAARKQELEEIL--HELESRLEEEEE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 573 RA-------------LSDLRRITAEKEALREKLKnIQELNVVGK-SELEKTIEHLTYINHQLENEKYELQSKILIMKETI 638
Cdd:pfam01576 90 RSqqlqnekkkmqqhIQDLEEQLDEEEAARQKLQ-LEKVTTEAKiKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNL 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 639 ESLESKSKlqaqKLSHVTGDSSHQKTEMNSLRIVSEQLQRSLDDCQHRLSikrGELESAQEQIKALEQKLESLSHRMTMQ 718
Cdd:pfam01576 169 AEEEEKAK----SLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLE---GESTDLQEQIAELQAQIAELRAQLAKK 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 719 SEETHAMKKTIGVMDKEKDFLQETVDEKTEKIASLQDSLIS----KEKAITQLKVTVSECESSLNQLQETL--TNRDREI 792
Cdd:pfam01576 242 EEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESeraaRNKAEKQRRDLGEELEALKTELEDTLdtTAAQQEL 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 793 NSLRRQ-LDATHKELDDVGKSREISYKENRRLQddlatmARENQEISLELEAAVQEKeemksrvhkyitevSRWESLMAA 871
Cdd:pfam01576 322 RSKREQeVTELKKALEEETRSHEAQLQEMRQKH------TQALEELTEQLEQAKRNK--------------ANLEKAKQA 381
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 872 KEKENKDLLDRFQMLHNRAEDWEIKAQQAEGENSSVRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAK 951
Cdd:pfam01576 382 LESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSK 461
|
....*....
gi 564383425 952 AMSQLEEEL 960
Cdd:pfam01576 462 DVSSLESQL 470
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
642-847 |
2.05e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.74 E-value: 2.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 642 ESKSKLQAQKLSHVTGDSSHQKTEMNSLRIVSEQLQRSLDDCQHRLSIKRGELESAQEQIKALEQKLESLSHRMT----- 716
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGerara 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 717 --------------MQSEETHAMKKTIGVMDKEKDFLQETVDEKTEKIASLQDSLISKEKAITQLKVTVSECESSLNQLQ 782
Cdd:COG3883 95 lyrsggsvsyldvlLGSESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELE 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564383425 783 ETLTNRDREINSLRRQLDATHKELDDVGKSREISYKENRRLQDDLATMARENQEISLELEAAVQE 847
Cdd:COG3883 175 AQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 239
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
202-430 |
2.22e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.74 E-value: 2.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 202 ADNRIQELQEEVHQLQEKLAQMEKGVQDYSRQIELREREIERLSVAVDggrspdilSLETRNKTNEKLIAQLNIQVDflq 281
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELE--------ALQAEIDKLQAEIAEAEAEIE--- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 282 QANKELERRIQELMETKATVTTEVVNLSNRNeklcqelteIDQMAQQLERhKEQVLETADRELGEAKKEIKRNLSEMRNL 361
Cdd:COG3883 83 ERREELGERARALYRSGGSVSYLDVLLGSES---------FSDFLDRLSA-LSKIADADADLLEELKADKAELEAKKAEL 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564383425 362 EEKMSKLQweldvsnkekerlngelLLKSDLETVVHQLEQEKQRLNKKLQSFAVTERELTLEVERMRLE 430
Cdd:COG3883 153 EAKLAELE-----------------ALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAE 204
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
665-939 |
2.38e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.84 E-value: 2.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 665 EMNSLRIVS---------EQLQRS----LDDCQHRLSIKR-GELESAQEQIKALEQKLESLS--------HRMTMQSEET 722
Cdd:PRK05771 5 RMKKVLIVTlksykdevlEALHELgvvhIEDLKEELSNERlRKLRSLLTKLSEALDKLRSYLpklnplreEKKKVSVKSL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 723 hamKKTIGVMDKEKDFLQETVDEKTEKIASLQDSLISKEKAITQLKVtVSECESSLNQLQEtLTNRDREINSLRRQLDAT 802
Cdd:PRK05771 85 ---EELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEP-WGNFDLDLSLLLG-FKYVSVFVGTVPEDKLEE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 803 HKELDDVGKSREISYKEN---------RRLQDDLATMARENQEISLELeaavQEKEEMKSRVHKYITEVSRWeslmaakE 873
Cdd:PRK05771 160 LKLESDVENVEYISTDKGyvyvvvvvlKELSDEVEEELKKLGFERLEL----EEEGTPSELIREIKEELEEI-------E 228
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564383425 874 KENKDLLDRFQMLHNRAEDwEIKAQQAEGENSSVRLELLSIDTERRHL--------RERVELLEKEIQEHINAH 939
Cdd:PRK05771 229 KERESLLEELKELAKKYLE-ELLALYEYLEIELERAEALSKFLKTDKTfaiegwvpEDRVKKLKELIDKATGGS 301
|
|
| Leu_zip |
pfam15294 |
Leucine zipper; This family includes Leucine zipper transcription factor-like protein 1 ... |
273-411 |
2.51e-03 |
|
Leucine zipper; This family includes Leucine zipper transcription factor-like protein 1 (LZTFL1) and Leucine zipper protein 2 (LUZP2).
Pssm-ID: 464620 [Multi-domain] Cd Length: 276 Bit Score: 41.23 E-value: 2.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 273 LNIQVDFLQQANKELERRIQELMETKATVTT--------------------------EVVNLSNRNEKLCQELTEIDQMA 326
Cdd:pfam15294 77 LKLQADISELENRELLEQIAEFEEREFTSSNkkpnfelnkpkleplnegggsallhmEIERLKEENEKLKERLKTLESQA 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 327 QQLERHKEQV---LETADRELGeAKKEIKRNLSEMRNLEEKMSKLQWELDVSNKEKERLNGELLL-----KSDLETVVHQ 398
Cdd:pfam15294 157 TQALDEKSKLekaLKDLQKEQG-AKKDVKSNLKEISDLEEKMAALKSDLEKTLNASTALQKSLEEdlastKHELLKVQEQ 235
|
170
....*....|...
gi 564383425 399 LEQEKQRLNKKLQ 411
Cdd:pfam15294 236 LEMAEKELEKKFQ 248
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
203-377 |
2.56e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.93 E-value: 2.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 203 DNRIQELQEEVHQLQEKLAQM--EKGVQDYSRQIELREREIERLSVAVDGGRSpDILSLETRNKTNEKLIAQLNIQVDFL 280
Cdd:COG3206 181 EEQLPELRKELEEAEAALEEFrqKNGLVDLSEEAKLLLQQLSELESQLAEARA-ELAEAEARLAALRAQLGSGPDALPEL 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 281 QQ--ANKELERRIQELMETKATVTT-------EVVNLSNRNEKLCQELTEIDQMAQQLERHKEQVLETADRELGEAKKEI 351
Cdd:COG3206 260 LQspVIQQLRAQLAELEAELAELSArytpnhpDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQL 339
|
170 180
....*....|....*....|....*.
gi 564383425 352 KRNLSEMRNLEEKMSKLQWELDVSNK 377
Cdd:COG3206 340 EARLAELPELEAELRRLEREVEVARE 365
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
260-443 |
3.40e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 40.77 E-value: 3.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 260 ETRNKTNEKLIAQLNIQVDFLQQANKELERRIQELMETKAtvttevvNLSNRNEKLCQELTEIDQMAQQLERHKEQVLET 339
Cdd:smart00787 136 EWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKP-------KLRDRKDALEEELRQLKQLEDELEDCDPTELDR 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 340 ADRELGEAKKEIKRNLSEMRNLEEKMSKLQWELDVSNKEKERLNGELllksdletvvhqLEQEKQRLNKKLQSFAvTERE 419
Cdd:smart00787 209 AKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEI------------AEAEKKLEQCRGFTFK-EIEK 275
|
170 180
....*....|....*....|....
gi 564383425 420 LTLEVERMRLEHGIKRRDKSPSRL 443
Cdd:smart00787 276 LKEQLKLLQSLTGWKITKLSGNTL 299
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
504-715 |
3.85e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 3.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 504 ERDELQRMLERFEKYMEDIQSNVKLLTAERDRLSVLYKEAKEELSALRQEstgslapnnlVSCIEKEKERALSDLRRITA 583
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARR----------IRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 584 EKEALREKLKNIQE---------------------LNVVGKSELEKTIEHLTYINHQLENEKYELQSKILIMKETIESLE 642
Cdd:COG4942 91 EIAELRAELEAQKEelaellralyrlgrqpplallLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564383425 643 SKSKLQAQKLSHVTGDSSHQKTEMNSLRIVSEQLQRSLDDCQHRLSIKRGELESAQEQIKALEQKLESLSHRM 715
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
503-881 |
3.95e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 41.43 E-value: 3.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 503 RERDELQRMLERFEKYMEDIQSNVKLLTAERDRLSVLYKEAKEELSALRQESTGSLAPNNLVSCIEKEKERAlSDLRRIT 582
Cdd:PLN02939 39 RRGFSSQQKKKRGKNIAPKQRSSNSKLQSNTDENGQLENTSLRTVMELPQKSTSSDDDHNRASMQRDEAIAA-IDNEQQT 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 583 AEKEalREKLKNIQELNVVGK-SELEKTI-----------EHLTYINHqlenEKYELQSKILIMKETIESLESKSKLQAQ 650
Cdd:PLN02939 118 NSKD--GEQLSDFQLEDLVGMiQNAEKNIlllnqarlqalEDLEKILT----EKEALQGKINILEMRLSETDARIKLAAQ 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 651 KLSHVtgdsshqktemnslRIVSEQLQRSLDDCQHRLSIKRGELESAQEQIKALEQKLESLSHRMTMQSEETHAMKKT-- 728
Cdd:PLN02939 192 EKIHV--------------EILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETee 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 729 -IGVMDKEKDFLQETVDEktekiasLQDSLISKEKAITQLKVTVSEC----ESSLNQLQETLTNRDREINSLRRQLDATH 803
Cdd:PLN02939 258 rVFKLEKERSLLDASLRE-------LESKFIVAQEDVSKLSPLQYDCwwekVENLQDLLDRATNQVEKAALVLDQNQDLR 330
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564383425 804 KELDDVgksrEISYKENRRLQDDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRW-ESLMAAKEKENKDLLD 881
Cdd:PLN02939 331 DKVDKL----EASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFqDTLSKLKEESKKRSLE 405
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
317-894 |
4.07e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.18 E-value: 4.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 317 QELTEIDQMAQQLERHKEQVLETADrELGEAKKEIKRNLSEMRNLEEKMSKLQWELDVSNKEKERLNGELllkSDLETVV 396
Cdd:PRK02224 213 SELAELDEEIERYEEQREQARETRD-EADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEV---RDLRERL 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 397 HQLEQEKQRLNKK-----LQSFAVTERELTLEVERMRLEHGIKRRDKSPSRLDTFLKGIEDERDYYKKELEKLQhliqrr 471
Cdd:PRK02224 289 EELEEERDDLLAEaglddADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELR------ 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 472 scsviycarekppiikcSEKGDCNSDIHLITRERDELQRMLERFEKYMEDIQSNVKLLTAERDRLSVLYKEAKEELSALR 551
Cdd:PRK02224 363 -----------------EEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELR 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 552 QEstgslapnnlvsciEKEKERALSDLRRITAEKEALREKLKNIQELNVVGKSELEKTIEHLTYINHQLENEKYELQSKI 631
Cdd:PRK02224 426 ER--------------EAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEV 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 632 LIMKETIESLESKSKLQAqklshvtgdsshqktEMNSLRIVSEQLQRSLDDCQHRLSIKRGELESAQEQIKALEQKLESL 711
Cdd:PRK02224 492 EEVEERLERAEDLVEAED---------------RIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEK 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 712 SHRMTMQSEETHAMKKTIGVMDKEkdflQETVDEKTEKIASLQDSLiskekaitqlkVTVSECESSLNQLQETLTNRDrE 791
Cdd:PRK02224 557 REAAAEAEEEAEEAREEVAELNSK----LAELKERIESLERIRTLL-----------AAIADAEDEIERLREKREALA-E 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 792 INSLRRQldaTHKELDDVGKSREISYKENR--RLQDDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLm 869
Cdd:PRK02224 621 LNDERRE---RLAEKRERKRELEAEFDEARieEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEEL- 696
|
570 580
....*....|....*....|....*
gi 564383425 870 AAKEKENKDLLDRFQMLHNRAEDWE 894
Cdd:PRK02224 697 RERREALENRVEALEALYDEAEELE 721
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
702-823 |
4.19e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.38 E-value: 4.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 702 KALEQKLESLSHRMtmQSEETHAMKKTIGVMDKEKDFLQETVDEKTEKIASLQDSLISKEKAITQLKVTVSECESSLNQL 781
Cdd:COG2433 376 LSIEEALEELIEKE--LPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEA 453
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 564383425 782 Q---ETLTNRDREINSLRRQLDATHKELDDVGKSREISYKENRRL 823
Cdd:COG2433 454 RseeRREIRKDREISRLDREIERLERELEEERERIEELKRKLERL 498
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
199-465 |
4.25e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.16 E-value: 4.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 199 LQVADNRIQELQEEVHQLQEKLAQMEKGVQDYSRQIELREREIErlsvavdggrspdilSLETRNKTNEKLIAQLNIQVD 278
Cdd:TIGR04523 400 IQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIK---------------DLTNQDSVKELIIKNLDNTRE 464
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 279 FLQQANKELERRIQELMETKATVTTEVVNLSNRNEKLCQELTEIDQMAQQLERHKEQVLETADrelgEAKKEIKRNLSEM 358
Cdd:TIGR04523 465 SLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIE----KLESEKKEKESKI 540
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 359 RNLEEKMSKLQWELDVSNKEKE-----------RLNGELLLKS--DLETVVHQLEQEKQRLNKKLQSFAVTERELTLEVE 425
Cdd:TIGR04523 541 SDLEDELNKDDFELKKENLEKEideknkeieelKQTQKSLKKKqeEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELE 620
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 564383425 426 RMRLEHgikrrdkspSRLDTFLKGIEDERDYYKKELEKLQ 465
Cdd:TIGR04523 621 KAKKEN---------EKLSSIIKNIKSKKNKLKQEVKQIK 651
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
870-1133 |
4.54e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 4.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 870 AAKEKENKDLLDRFQMLHNRAEDWEIKAQQAEGENSSVRLELLSIDTERRHLRERVELLEKEIQEHinahhayESQISSM 949
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAAL-------EAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 950 AKAMSQLEEELRRHESEKATVLGDVSSLrelcikldSGKDIMTHQLNSKglELERAVAELENVKSESELLKKQLMTERQT 1029
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLRALYRL--------GRQPPLALLLSPE--DFLDAVRRLQYLKYLAPARREQAEELRAD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 1030 INSLESLLATNRDKEFQSHLTSHEKDTEIQLLKEKLNLSESKLTTQSRETSMLRTKVTQLQTDYDNLKRLMsnEKYERER 1109
Cdd:COG4942 159 LAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALI--ARLEAEA 236
|
250 260
....*....|....*....|....
gi 564383425 1110 AIQELRRLGLPTSPLSSTLRSPMQ 1133
Cdd:COG4942 237 AAAAERTPAAGFAALKGKLPWPVS 260
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
328-464 |
5.57e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 40.68 E-value: 5.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 328 QLERHKEQVLETADRELGEAKKEIKRNLSEMRNLEEKMSKLQ-W---ELDVSNKEKE--------RLNGELLLKSDLETV 395
Cdd:PRK05771 86 ELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEpWgnfDLDLSLLLGFkyvsvfvgTVPEDKLEELKLESD 165
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564383425 396 VHQLEQEKQRLNKKLqSFAVTERELTLEVERMRLEHGIKR----RDKSP----SRLDTFLKGIEDERDYYKKELEKL 464
Cdd:PRK05771 166 VENVEYISTDKGYVY-VVVVVLKELSDEVEEELKKLGFERleleEEGTPseliREIKEELEEIEKERESLLEELKEL 241
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
662-850 |
6.00e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.20 E-value: 6.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 662 QKTEMNSLRIVSEQLQRSLDDCQHRLSIKRGELESAQEQIKALEQKLESLSHRMTMQSEE----THAMKKTIGVMDKEK- 736
Cdd:COG3883 21 KQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEieerREELGERARALYRSGg 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 737 --DFLQETVDEKtekiaSLQDsLISKEKAITQLKVTVSECESSLNQLQETLTNRDREINSLRRQLDATHKELDDVGKSRE 814
Cdd:COG3883 101 svSYLDVLLGSE-----SFSD-FLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELE 174
|
170 180 190
....*....|....*....|....*....|....*.
gi 564383425 815 ISYKENRRLQDDLATMARENQEISLELEAAVQEKEE 850
Cdd:COG3883 175 AQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEA 210
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
499-1091 |
6.24e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 40.81 E-value: 6.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 499 HLITRERDELQRMLERFEKYMEDIQSNVKLLTAERDRLSVLykeaKEELSALRQESTGSLAPNNLVSCIEKEKERALSDL 578
Cdd:TIGR01612 744 HIHGEINKDLNKILEDFKNKEKELSNKINDYAKEKDELNKY----KSKISEIKNHYNDQINIDNIKDEDAKQNYDKSKEY 819
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 579 RRITAEKEalREKLKNIQELNVVGKSELEKTIEHLTYINHQLENEKYELQSkiliMKETIESLesKSKLQAQKLSHVTGD 658
Cdd:TIGR01612 820 IKTISIKE--DEIFKIINEMKFMKDDFLNKVDKFINFENNCKEKIDSEHEQ----FAELTNKI--KAEISDDKLNDYEKK 891
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 659 SSHQKTEMNSLRIVSEQLQRSLDdcqhrlsikrgELESAQEQIKALEQKLESLSHRMTMQSEETHAMKKTIGVMdKEKDF 738
Cdd:TIGR01612 892 FNDSKSLINEINKSIEEEYQNIN-----------TLKKVDEYIKICENTKESIEKFHNKQNILKEILNKNIDTI-KESNL 959
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 739 LQETVDEKTEKiaSLQDSLISKEKAITQLkvTVSECESSLNQLQETLTNRDREI-----NSLRRQLDATHKELDDVGKSR 813
Cdd:TIGR01612 960 IEKSYKDKFDN--TLIDKINELDKAFKDA--SLNDYEAKNNELIKYFNDLKANLgknkeNMLYHQFDEKEKATNDIEQKI 1035
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 814 EISYKENRRLQDDLAT----------------MARENQEISLELEAAVQEKEEMKSRVH-------------KYITEVSR 864
Cdd:TIGR01612 1036 EDANKNIPNIEIAIHTsiyniideiekeigknIELLNKEILEEAEINITNFNEIKEKLKhynfddfgkeeniKYADEINK 1115
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 865 WESLMAAKEKENKDLLDRFQMLHNRAEDW--EIKAQQAEGENSsvrlellsidTERRHLRERVELLEKEIQE---HINAH 939
Cdd:TIGR01612 1116 IKDDIKNLDQKIDHHIKALEEIKKKSENYidEIKAQINDLEDV----------ADKAISNDDPEEIEKKIENivtKIDKK 1185
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 940 HAYESQISSMAKAMSQLEEELRRHESEKATVLGDVSSLRELCI-KLDSGKDIMTHQLNSkgleLERAVAELENVKSESEL 1018
Cdd:TIGR01612 1186 KNIYDEIKKLLNEIAEIEKDKTSLEEVKGINLSYGKNLGKLFLeKIDEEKKKSEHMIKA----MEAYIEDLDEIKEKSPE 1261
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564383425 1019 LKKQLMTERQTINSLESLLATNrDKEFQSHLTSHEKDTEIQLLKEKlnlsESKLTTQSRETSMLRTKVTQLQT 1091
Cdd:TIGR01612 1262 IENEMGIEMDIKAEMETFNISH-DDDKDHHIISKKHDENISDIREK----SLKIIEDFSEESDINDIKKELQK 1329
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
215-527 |
7.34e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.49 E-value: 7.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 215 QLQEKLAQMEKGVQDYSRQIELREREIERLSVAVDGGRSPDILSLETRNKTNEKLIAQLNIQVDFLQQANK--ELERRIQ 292
Cdd:pfam17380 288 QQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERkrELERIRQ 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 293 ELMETKATVTTEVVNL----SNRNEKLCQELtEIDQMAQQLERHKEQVLETADRELGEAKKEIKR-NLSEMRNLEEKMSk 367
Cdd:pfam17380 368 EEIAMEISRMRELERLqmerQQKNERVRQEL-EAARKVKILEEERQRKIQQQKVEMEQIRAEQEEaRQREVRRLEEERA- 445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 368 lqweldvsnKEKERLNGELLLKSDLETVVHQLEQEKQRLNKKLQSfAVTERELTLEVERMRLEHGIKRRDKSpsrldtfL 447
Cdd:pfam17380 446 ---------REMERVRLEEQERQQQVERLRQQEEERKRKKLELEK-EKRDRKRAEEQRRKILEKELEERKQA-------M 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 448 KGIEDERDYYKKELEKLQHLI----QRRSCSviycaREKPPIIKCSEKGDCNSDIHLITRERDELQRMlERFEKYMEDIQ 523
Cdd:pfam17380 509 IEEERKRKLLEKEMEERQKAIyeeeRRREAE-----EERRKQQEMEERRRIQEQMRKATEERSRLEAM-EREREMMRQIV 582
|
....
gi 564383425 524 SNVK 527
Cdd:pfam17380 583 ESEK 586
|
|
| AAA_13 |
pfam13166 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
207-425 |
7.73e-03 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.
Pssm-ID: 463796 [Multi-domain] Cd Length: 712 Bit Score: 40.43 E-value: 7.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 207 QELQEEVHQLQEKLaqmekgvqdySRQIELREREIERLSVAVDGGRSPDILSLETRNKTNEKLiaQLNIQVDFLQQAnke 286
Cdd:pfam13166 279 DEFTEFQNRLQKLI----------EKVESAISSLLAQLPAVSDLASLLSAFELDVEDIESEAE--VLNSQLDGLRRA--- 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 287 LERRIQELMetkATVTTEVV--NLSNRNEKLCQELTEIDQMAQQLERHKEQVLETADR----ELGEAKKEIKRNLSEMRN 360
Cdd:pfam13166 344 LEAKRKDPF---KSIELDSVdaKIESINDLVASINELIAKHNEITDNFEEEKNKAKKKlrlhLVEEFKSEIDEYKDKYAG 420
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564383425 361 LEEKMSKLQWELDVSNKEKERLNGElllKSDLETVVHQLEQEKQRLNKKLQSFAVTERELTLEVE 425
Cdd:pfam13166 421 LEKAINSLEKEIKNLEAEIKKLREE---IKELEAQLRDHKPGADEINKLLKAFGFGELELSFNEE 482
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
665-1104 |
8.98e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.00 E-value: 8.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 665 EMNSLRIVSEQLQRSLDDCQHRLSIKRGELESAQEQIKALEQKLESLSHRMTMQSEETHAMKKTIGVMDKEKDFLQETVD 744
Cdd:TIGR04523 41 KLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKN 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 745 EKTEKIASLQDSLISKEKAITQLKVTVSECESSLNQLQETLTNRDREINSLRRQLDATHKELDDVGKSREISYKENRRLQ 824
Cdd:TIGR04523 121 KLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 825 DDLATMARENQEISlELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENKDlldrfQMLHNRAEDWEIKAQQAEGEN 904
Cdd:TIGR04523 201 LLLSNLKKKIQKNK-SLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQT-----QLNQLKDEQNKIKKQLSEKQK 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 905 SSVRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSQLEEELRRHESEkatvlgdVSSLRELCIKL 984
Cdd:TIGR04523 275 ELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKI-------ISQLNEQISQL 347
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564383425 985 DSGKDIMTHQLNSKGLELERAVAELENVKSESELLKKQLMTERQTINSLESLLATNRDKEFQSHLTSHEKDTEIQLLKEK 1064
Cdd:TIGR04523 348 KKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKE 427
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 564383425 1065 LNLSESKLTTQSRETSMLRTKVTQLQTDYDNLKRLMSNEK 1104
Cdd:TIGR04523 428 IERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLE 467
|
|
| |
