|
Name |
Accession |
Description |
Interval |
E-value |
| CCCAP |
pfam15964 |
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in ... |
6-718 |
0e+00 |
|
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in eukaryotes. CCCAP is also known as SDCCAG8, serologically defined colon cancer antigen 8. It is associated with the centrosome.
Pssm-ID: 435040 [Multi-domain] Cd Length: 703 Bit Score: 881.94 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 6 GNSTLEDSLGQYQRSLRERANRSIHQLKCALREVDVTVEEDALDPSTSINVENEDTGVAWHELQHSHAVNQLKALLRQQT 85
Cdd:pfam15964 1 GNSTLEESLGQYQRSLRERANRSIHQLKCALHESDSTISEDEQEESLSSVVQNEDSGSPWSELQHSHAVNQLKALLQQQT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 86 NKENETSPpRRRKLSPSRPSECDDGSMPTMHNLVPIINDQSQYIHHLEAEVKFCKDELSGMKNRVQVVVLENERLQQELK 165
Cdd:pfam15964 81 KKENELSP-RRRKLSPSRTSEDESSSLPTVHDLVPIINDQSQYIHHLEAEVKFCKEELSEMKQRVQVVVLENEKLQQELK 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 166 SQRPEETLREQTFLDASGNMQNSWiMTREDSRVDEAAKRPFSHGDAETGKTASTGDANKWKLELERLKLTYEAKTDLLES 245
Cdd:pfam15964 160 SQTQEETLREQTLLDSSGNMQNSW-CTPEDSRVHQTSKRPASHNLAERLKSATTGEDEKWRLELEKLKLLYEAKTEVLES 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 246 QLMLLRKDLAEYQKTCEDLKERLKHKESLLAASASSRVGGLCLKCAQHEAVLSQTHSNVHIQTIERLTKERDDLMSVLVS 325
Cdd:pfam15964 239 QVKSLRKDLAESQKTCEDLKERLKHKESLVAASTSSRVGGLCLKCAQHEAVLAQTHTNVHMQTIERLTKERDDLMSALVS 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 326 VRSSLAEAQKRETSAYEQVKHAVQMTEEANFEKTKALIQCEQLKSELERQTERLEKELASQQEKRAVEKEMIKKEVARER 405
Cdd:pfam15964 319 VRSSLAEAQQRESSAYEQVKQAVQMTEEANFEKTKALIQCEQLKSELERQKERLEKELASQQEKRAQEKEALRKEMKKER 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 406 EDAESKMLILSQNIAKLEAQVEKVTREKTAAVSHLEEIQNHVASQEMDVTKVCGEMRFQLNKTKMEKDEVEKEHREYKAK 485
Cdd:pfam15964 399 EELGATMLALSQNVAQLEAQVEKVTREKNSLVSQLEEAQKQLASQEMDVTKVCGEMRYQLNQTKMKKDEAEKEHREYRTK 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 486 SHKDLEMKvqnevwmfqKQEIEKLRLELSESEQHVEQEQQKAARARQECLRVTELLGEAERQLHLTRLEKDSIQQSFSNE 565
Cdd:pfam15964 479 TGRQLEIK---------DQEIEKLGLELSESKQRLEQAQQDAARAREECLKLTELLGESEHQLHLTRLEKESIQQSFSNE 549
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 566 AKAQALQAQQREQELTQKIQQMETQHDKTESEQYLLLTSQNTFLTKLKEECCLLAKKLEKVSLKSRSQIVRLSQEKRYLC 645
Cdd:pfam15964 550 AKAQALQAQQREQELTQKMQQMEAQHDKTVNEQYSLLTSQNTFIAKLKEECCTLAKKLEEITQKSRSEVEQLSQEKEYLQ 629
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568911232 646 DKLEKLQKRNDELEEQCIQHGRVHETMKERLRQLDKHGQATAQQLVQLLNKQNQLLLERQNLSEEVARLRAQV 718
Cdd:pfam15964 630 DRLEKLQKRNEELEEQCVQHGRMHERMKQRLRQLDKHCQATAQQLVQLLSKQNQLFKERQNLTEEVQSLRSQV 702
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
309-590 |
6.06e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.22 E-value: 6.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 309 IERLTKERDDLMSVLVSVRSSLAEAQKRETSAYEQVKHAVQMTEEANFEKTKALIQCEQLKSELERQTERLEkelasQQE 388
Cdd:TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA-----QLS 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 389 KRAVEKEMIKKEVAREREDAESKMLILSQNIAKLEAQVEKVTREKTAAVSHLEEIQNHVASQEMDVTKVCGEMRFQLNKT 468
Cdd:TIGR02168 754 KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRI 833
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 469 KMEKDEVE---------KEHREYKAKSHKDL-----EMKVQNEVWMFQKQEIE----KLRLELSESEQHVEQEQQKAARA 530
Cdd:TIGR02168 834 AATERRLEdleeqieelSEDIESLAAEIEELeelieELESELEALLNERASLEealaLLRSELEELSEELRELESKRSEL 913
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 531 RQECLRVTELLGEAERQLHLTRLEKDSIQQSFSNEAKAQALQAQQREQELTQKIQQMETQ 590
Cdd:TIGR02168 914 RRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRR 973
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
401-717 |
6.83e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.22 E-value: 6.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 401 VAREREDAESKMLILSQNIAKLEAQVEKVT---REKTAAVSHLEEIQNHVASQEMDVTKVCGEMRFQLNKTKMEKDEVEK 477
Cdd:TIGR02168 661 ITGGSAKTNSSILERRREIEELEEKIEELEekiAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA 740
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 478 EHREYKAK-SHKDLEMKVQNEVWMFQKQEIEKLRLELSESEQHVEQEQQKAARARQECLRVTELLGEAERQLHLTRlekd 556
Cdd:TIGR02168 741 EVEQLEERiAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLN---- 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 557 siqqsfsneakaqalqaqQREQELTQKIQQMETQHDKTESEqyllltsqNTFLTKLKEEccllakklekvslkSRSQIVR 636
Cdd:TIGR02168 817 ------------------EEAANLRERLESLERRIAATERR--------LEDLEEQIEE--------------LSEDIES 856
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 637 LSQEkrylcdkLEKLQKRNDELEEQCIQHGRVHETMKERLRQLDKHGQATAQQLVQLLNKQNQLLLERQNLSEEVARLRA 716
Cdd:TIGR02168 857 LAAE-------IEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLEL 929
|
.
gi 568911232 717 Q 717
Cdd:TIGR02168 930 R 930
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
306-661 |
2.28e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.30 E-value: 2.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 306 IQTIERLTKERDDLMsvlvsvRSSLAEAQKRETSAYEQVkHAVQMTEEANFEKTKALIQCEQLKSELERQTERLEKELAS 385
Cdd:TIGR02169 197 RQQLERLRREREKAE------RYQALLKEKREYEGYELL-KEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 386 QQEKRAVEKEMIKKEvareredAESKMLILSQNIAKLEAQVEKVTREKTAAVSHLEEIQNHVASQEMdvtkvcgemrfQL 465
Cdd:TIGR02169 270 IEQLLEELNKKIKDL-------GEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEA-----------EI 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 466 NKTKMEKDEVEKEHREYKAKSHKdlemkvqnevwmfQKQEIEKLRLELSESEQHVEQEQQKAARARQEclrvtelLGEAE 545
Cdd:TIGR02169 332 DKLLAEIEELEREIEEERKRRDK-------------LTEEYAELKEELEDLRAELEEVDKEFAETRDE-------LKDYR 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 546 RQLHLTRLEKDSIQQSFSNEAKAQALQAQQREqELTQKIQQMETQHDKTESEqyllLTSQNTFLTKLKEECCLLAKKLEK 625
Cdd:TIGR02169 392 EKLEKLKREINELKRELDRLQEELQRLSEELA-DLNAAIAGIEAKINELEEE----KEDKALEIKKQEWKLEQLAADLSK 466
|
330 340 350
....*....|....*....|....*....|....*.
gi 568911232 626 VslksRSQIVRLSQEKRYLCDKLEKLQKRNDELEEQ 661
Cdd:TIGR02169 467 Y----EQELYDLKEEYDRVEKELSKLQRELAEAEAQ 498
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
351-719 |
1.83e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.61 E-value: 1.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 351 TEEANFEKTKALIQCEQLKSELERqTERLEKELASQQEKRAVEKEMIKKEVAREREDAESKMLILSQNIAKLEAQVEKVT 430
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIER-LDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 431 REKTAAVSHLEEIQnhvaSQEMDVTKVCGEMRFQLNK-TKMEKDEVEKEHREYKAKSHKdlemkvqnevwmfQKQEIEKL 509
Cdd:TIGR02169 244 RQLASLEEELEKLT----EEISELEKRLEEIEQLLEElNKKIKDLGEEEQLRVKEKIGE-------------LEAEIASL 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 510 RLELSESEQHVEQEQQKAARARQECLRVTELLGEAERQLHLTRLEKDSIQQSFSNeakaqalqAQQREQELTQKIQQMET 589
Cdd:TIGR02169 307 ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAE--------LKEELEDLRAELEEVDK 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 590 QHDKTESEqyllLTSQNTFLTKLKEECCLLAKKLEKVSLKSRsqivRLSQEKRYLCDKLEKLQKRNDELEEQCIQHGRVH 669
Cdd:TIGR02169 379 EFAETRDE----LKDYREKLEKLKREINELKRELDRLQEELQ----RLSEELADLNAAIAGIEAKINELEEEKEDKALEI 450
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 568911232 670 ETMKERLRQLDKHGQATAQQLVQLLNKQNQLLLERQNLSEEVARLRAQVG 719
Cdd:TIGR02169 451 KKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQAR 500
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
228-533 |
6.08e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.67 E-value: 6.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 228 ELERLKLTYEAKTDLLESQLMLLRKDLAEYQKTCEDLKERLKHKESLLAAsASSRVGGLCLKCAQHEAVLSQTHsnvhiQ 307
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISA-LRKDLARLEAEVEQLEERIAQLS-----K 754
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 308 TIERLTKERDDLMSVLVSVRSSLAEAQKRETSAYEQVKHAVQMTEEANFEKTKALIQCEQLKSELERQTERLEKElasqq 387
Cdd:TIGR02168 755 ELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESL----- 829
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 388 EKRAVEKEMIKKEVAREREDAESKMLILSQNIAKLEAQVEKVTREKTAAVSHLEEIQNHVASQEMDVTKVCGEMRfQLNK 467
Cdd:TIGR02168 830 ERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELR-ELES 908
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568911232 468 TKMEKDEVEKEHREYKAKSHKDLEmKVQNEVWMFQKQEIEKLRLELSESEQHVEQEQQKAARARQE 533
Cdd:TIGR02168 909 KRSELRRELEELREKLAQLELRLE-GLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRR 973
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
370-717 |
6.46e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.55 E-value: 6.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 370 SELERQTERLEKElASQQEKRavekemikKEVAREREDAESKMLILsqNIAKLEAQVEKVTREKTAAVSHLEEIQNHVAS 449
Cdd:COG1196 196 GELERQLEPLERQ-AEKAERY--------RELKEELKELEAELLLL--KLRELEAELEELEAELEELEAELEELEAELAE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 450 QEMdvtkvcgemrfQLNKTKMEKDEVEKEHREYKAKSHKdlemkvqnevwmfQKQEIEKLRLELSESEQHVEQEQQKAAR 529
Cdd:COG1196 265 LEA-----------ELEELRLELEELELELEEAQAEEYE-------------LLAELARLEQDIARLEERRRELEERLEE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 530 ARQECLRVTELLGEAERQLHLTRLEKDSIQQsfsneakaqalQAQQREQELTQKIQQMETQHDKTESEQYLLLTSQNTFL 609
Cdd:COG1196 321 LEEELAELEEELEELEEELEELEEELEEAEE-----------ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 610 TKLKEeccllAKKLEKVSLKSRSQIVRLSQEKRYLCDKLEKLQKRNDELEEQCIQHGRVHETMKERLRQLDKHGQATAQQ 689
Cdd:COG1196 390 EALRA-----AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLEL 464
|
330 340
....*....|....*....|....*...
gi 568911232 690 LVQLLNKQNQLLLERQNLSEEVARLRAQ 717
Cdd:COG1196 465 LAELLEEAALLEAALAELLEELAEAAAR 492
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
356-661 |
1.72e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.51 E-value: 1.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 356 FEKTKALIQCEQLKSELERQTERLEKELAS--------QQEKRAVEKEMIKKE------------VAREREDAESKMLIL 415
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAElrkeleelEEELEQLRKELEELSrqisalrkdlarLEAEVEQLEERIAQL 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 416 SQNIAKLEAQVEKVTREKTAAVSHLEEIQNHVASQEMDVTkvcgEMRFQLNKTKMEKDEVEKEHREYKAKSHKDLE--MK 493
Cdd:TIGR02168 753 SKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIE----QLKEELKALREALDELRAELTLLNEEAANLRErlES 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 494 VQNEVWMFQK------QEIEKLRLELSESEQHVEQEQQKAARARQECLRVTELLGEAERQLHLTRLEKDSIQQSFsNEAK 567
Cdd:TIGR02168 829 LERRIAATERrledleEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEEL-RELE 907
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 568 AQALQAQQREQELTQKIQQMETQHDKTESEqyllltsQNTFLTKLKEECCLLA-------KKLEKVSLKSRSQIVRLSQE 640
Cdd:TIGR02168 908 SKRSELRRELEELREKLAQLELRLEGLEVR-------IDNLQERLSEEYSLTLeeaealeNKIEDDEEEARRRLKRLENK 980
|
330 340
....*....|....*....|....*...
gi 568911232 641 KRYL-------CDKLEKLQKRNDELEEQ 661
Cdd:TIGR02168 981 IKELgpvnlaaIEEYEELKERYDFLTAQ 1008
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
342-610 |
2.20e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.13 E-value: 2.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 342 EQVKHAVQMTEEANFEKTKALIQCEQLKS---ELERQTERLEKELASQQEKRAvEKEMIKKEVAREREDAESKMLILSQN 418
Cdd:TIGR02168 246 EELKEAEEELEELTAELQELEEKLEELRLevsELEEEIEELQKELYALANEIS-RLEQQKQILRERLANLERQLEELEAQ 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 419 IAKLEAQVEKVTREKTAAVSHLEEIQNHVASQEMDVTKVCGEMRFQLNKTKMEKDEVEKEHREYKAKSHKdlEMKVQNEV 498
Cdd:TIGR02168 325 LEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQ--IASLNNEI 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 499 wmfQKQEIEKLRLELSESEQHVEQEQQKAARARQECLRVTELLGEAERQLHLTRLEKDSIQQsfsneakaQALQAQQREQ 578
Cdd:TIGR02168 403 ---ERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEE--------ALEELREELE 471
|
250 260 270
....*....|....*....|....*....|..
gi 568911232 579 ELTQKIQQMETQHDKTESEQYLLLTSQNTFLT 610
Cdd:TIGR02168 472 EAEQALDAAERELAQLQARLDSLERLQENLEG 503
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
221-451 |
3.02e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.62 E-value: 3.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 221 DANKWKLELERLKL---TYEAKTDLLESQLMLLRKDLAEYQKTCEDLKERLKHKESLLAA--SASSRVGGLCLKCAQHEA 295
Cdd:COG1196 226 EAELLLLKLRELEAeleELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEaqAEEYELLAELARLEQDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 296 VLSQTHSNVHiQTIERLTKERDDLMSVLVSVRSSLAEAQKRETSAYEQVKHAVQMTEEANFEKTKALIQCEQLKSELERQ 375
Cdd:COG1196 306 RLEERRRELE-ERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEEL 384
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568911232 376 TERLEKELASQQEKRAVEKEMIKKEVAREREDAEskmliLSQNIAKLEAQVEKVTREKTAAVSHLEEIQNHVASQE 451
Cdd:COG1196 385 AEELLEALRAAAELAAQLEELEEAEEALLERLER-----LEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE 455
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
502-718 |
2.40e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.66 E-value: 2.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 502 QKQEIEKLRLELSESEQHVEQEQQKAARARQECLRVTELLGEAERQLHLTRLEKDSIQQSFS---NEAKAQALQAQQREQ 578
Cdd:TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLArleAEVEQLEERIAQLSK 754
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 579 ELTQKIQQMETQHDKTESEQYLLLTSQNTfLTKLKEEccllAKKLEKVSLKSRSQIVRLSQEKRYLCDKLEKLQKRNDEL 658
Cdd:TIGR02168 755 ELTELEAEIEELEERLEEAEEELAEAEAE-IEELEAQ----IEQLKEELKALREALDELRAELTLLNEEAANLRERLESL 829
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 659 EEQCIQHGRVHETMKERLRQLDKHGQATAQQLVQLLNKQNQLLLERQNLSEEVARLRAQV 718
Cdd:TIGR02168 830 ERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEAL 889
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
357-678 |
3.68e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.19 E-value: 3.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 357 EKTKALIQCEQLKSELERQTERLEKELASQQEKRAVEKEMIKKEVAREREDAESKMLILSQNIAKLEAQVEKVTREKTAA 436
Cdd:pfam02463 173 EALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 437 VSHLEEIQNHVASQEMDVTKVCGEMRFQLNKTKMEKDEVEKEHREYKAKSHKDLEMKVQNEvwmFQKQEIEKLRLELSES 516
Cdd:pfam02463 253 IESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDE---EKLKESEKEKKKAEKE 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 517 EQHVEQEQQKAARARQECLRVTELLGEAERQLHLTRLE----KDSIQQSFSNEAKAQALQAQQREQELTQKIQQMETQHD 592
Cdd:pfam02463 330 LKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKleqlEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQL 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 593 KTESEQYLLLTSQNTFLTKLKEECCLLAKKLEKVSLKSRSQIVRLSQEKRYLCDKLEKLQKRNDELEEQCIQHGRVHETM 672
Cdd:pfam02463 410 LLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELL 489
|
....*.
gi 568911232 673 KERLRQ 678
Cdd:pfam02463 490 LSRQKL 495
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
228-717 |
3.96e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.77 E-value: 3.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 228 ELERLKLTYEAKTDLLES---QLMLLRKDLAEYQKTCEDLKERLKHKESLLAAsassrvgglclkcAQHEAVLSQTHSNV 304
Cdd:COG1196 268 ELEELRLELEELELELEEaqaEEYELLAELARLEQDIARLEERRRELEERLEE-------------LEEELAELEEELEE 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 305 HIQTIERLTKERDDLMSVLVSVRSSLAEAQKRETSAYEQVKHAVQMTEEAN---FEKTKALIQCEQLKSELERQTERLEK 381
Cdd:COG1196 335 LEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAeelLEALRAAAELAAQLEELEEAEEALLE 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 382 ELASQQEKRAVEKEmIKKEVAREREDAESKMLILSQNIAKLEAQVEKVTREKTAAVSHLEEIQNHVASQEMDVtkvcGEM 461
Cdd:COG1196 415 RLERLEEELEELEE-ALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL----AEA 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 462 RFQLNKTKMEKDEVEKEHREYKAKSHKDLEMKVQNEV--WMFQKQEIEK-LRLELSESEQHVEQEQQKAARARQECL--- 535
Cdd:COG1196 490 AARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVavLIGVEAAYEAaLEAALAAALQNIVVEDDEVAAAAIEYLkaa 569
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 536 ---RVTELLGEAERQLHLTRLEKDSIQQSFSN----------EAKAQALQAQQREQELTQKIQQMETQHDKTESEQYLLL 602
Cdd:COG1196 570 kagRATFLPLDKIRARAALAAALARGAIGAAVdlvasdlreaDARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREV 649
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 603 TSQNT-----------FLTKLKEECCLLAKKLEKVSLKSRSQIVRLSQEKRYLCDKLEKLQKRNDELEEQCIQHGRVHET 671
Cdd:COG1196 650 TLEGEggsaggsltggSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQ 729
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 568911232 672 MKERLRQLDKHGQATAQQLVQLLNKQNQLLLERQNLSEEVARLRAQ 717
Cdd:COG1196 730 LEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLERE 775
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
237-548 |
7.19e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.11 E-value: 7.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 237 EAKTDLLESQLMLLRKDLAEYQKTCEDLKERLKHKESLLAAsassrvgGLCLKCAQheavlsQTHSNVHIQTIERLTKER 316
Cdd:PRK02224 411 EDFLEELREERDELREREAELEATLRTARERVEEAEALLEA-------GKCPECGQ------PVEGSPHVETIEEDRERV 477
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 317 DDLMSVLVSVRSSLAEAQKRETSAYEQVKHAVQMTEEAnfEKTKALIQ-CEQLKSELERQTERLE--KELASQQEKRAVE 393
Cdd:PRK02224 478 EELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLE--ERREDLEElIAERRETIEEKRERAEelRERAAELEAEAEE 555
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 394 KEMIKKEVAREREDAESKMLILSQNIAKLEAQVEKVTRektaAVSHLEEIQNhvasqemdvtkvCGEMRFQLNKTKMEKD 473
Cdd:PRK02224 556 KREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER----IRTLLAAIAD------------AEDEIERLREKREALA 619
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568911232 474 EVEKEHREY---KAKSHKDLEMKVQNEvwmfqkqEIEKLRLELSESEQHVEQEQQKAARARQECLRVTELLGEAERQL 548
Cdd:PRK02224 620 ELNDERRERlaeKRERKRELEAEFDEA-------RIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENEL 690
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
125-435 |
9.13e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.74 E-value: 9.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 125 QSQYIHHLEAEVKFCKDELSGMKNRVQVVVLENERLQQELKS--QRPEETLREQTFLDASGNMQNSWIMTREDsRVDEAA 202
Cdd:TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQlrKELEELSRQISALRKDLARLEAEVEQLEE-RIAQLS 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 203 KRPFSHGDAETGKTASTGDANKWKLELERLKLTYEAKTDLLESQLMLLRKDLAEYQKTCEDLKERLKHKESLLAASASSR 282
Cdd:TIGR02168 754 KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRI 833
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 283 VgglclKCAQHEAVLSQTHSNVHiQTIERLTKERDDL----------MSVLVSVRSSLAEAQKRETSAYEQVKHAVQMTE 352
Cdd:TIGR02168 834 A-----ATERRLEDLEEQIEELS-EDIESLAAEIEELeelieeleseLEALLNERASLEEALALLRSELEELSEELRELE 907
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 353 EANFEKTKALIQCEQLKSELERQTERLEKELASQQEKRAVEKEMikkevarEREDAESKMLILSQNIAKLEAQVEKVTRE 432
Cdd:TIGR02168 908 SKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSL-------TLEEAEALENKIEDDEEEARRRLKRLENK 980
|
...
gi 568911232 433 KTA 435
Cdd:TIGR02168 981 IKE 983
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
237-432 |
9.36e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 9.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 237 EAKTDLLESQLMLLRKDLAEYQKTCEDLKERLKHKESLLAAsassrvgglCLKCAQHEAVLSQTHSnvHIQTIERLTKER 316
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREA---------LQRLAEYSWDEIDVAS--AEREIAELEAEL 677
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 317 DDL---MSVLVSVRSSLAEAQKRETSAYEQVKHAVQMTEEANFEKTKALIQCEQLKSELERQTERLEKELASQQEKRaVE 393
Cdd:COG4913 678 ERLdasSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEER-FA 756
|
170 180 190
....*....|....*....|....*....|....*....
gi 568911232 394 KEMIKKEVAREREDAESKMLILSQNIAKLEAQVEKVTRE 432
Cdd:COG4913 757 AALGDAVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
495-718 |
1.30e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 1.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 495 QNEVWMFQKQEIEKLRLELSESEQHVEQEQQKAARARQECLRVTELLGEAERQLHLTRLEKDSIQQSFsNEAKAQALQAQ 574
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAEL-AELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 575 QREQELTQKIQQMETQHDKTESEQYL-LLTSQNTFLTKLKeecclLAKKLEKVSLKSRSQIVRLSQEkrylcdkLEKLQK 653
Cdd:COG4942 97 AELEAQKEELAELLRALYRLGRQPPLaLLLSPEDFLDAVR-----RLQYLKYLAPARREQAEELRAD-------LAELAA 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568911232 654 RNDELEEQCIQHGRVHETMKERLRQLDKHGQATAQQLVQLLNKQNQLLLERQNLSEEVARLRAQV 718
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALI 229
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
228-451 |
1.83e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.97 E-value: 1.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 228 ELERLKLTYEAKTDLLESQLMLLRKDLAEYQKTCEDLKERLKHKE---------------SLLAASASSRVGGLCLKCAQ 292
Cdd:TIGR02168 257 ELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEqqkqilrerlanlerQLEELEAQLEELESKLDELA 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 293 HEAVLSQTHSNVHIQTIERLTKERDDLMSVLVSVRSSLAEAQKRETSAYEQVKHAVQMTEEANFEKTKALIQCEQLKSEL 372
Cdd:TIGR02168 337 EELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRR 416
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568911232 373 ERQTERLEKELASQQEKRAVEKEMIKKEVAREREDAESKMLILSQNIAKLEAQVEKVTREKTAAVSHLEEIQNHVASQE 451
Cdd:TIGR02168 417 ERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLE 495
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
367-660 |
2.08e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.59 E-value: 2.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 367 QLKSELERQTER---LEKELAS-QQEKRAVEKEMikKEVAREREDAESKMLILSQNIAKLEAQVEKVTREKTAAVSHLEE 442
Cdd:TIGR02169 671 SEPAELQRLRERlegLKRELSSlQSELRRIENRL--DELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSS 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 443 IQNHVAS--QEM-DVTKVCGEMRFQLNKTKMEKDEVEKEHREYKAKshkdlemKVQNEvwmfqKQEIEKLRLELSESEQH 519
Cdd:TIGR02169 749 LEQEIENvkSELkELEARIEELEEDLHKLEEALNDLEARLSHSRIP-------EIQAE-----LSKLEEEVSRIEARLRE 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 520 VEQEQQKAARARQEclrVTELLGEAERQLHLTRLEKDSIQQsfsneakaqalqaqqREQELTQKIQQMETQHDKTESEQY 599
Cdd:TIGR02169 817 IEQKLNRLTLEKEY---LEKEIQELQEQRIDLKEQIKSIEK---------------EIENLNGKKEELEEELEELEAALR 878
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568911232 600 LLLTSqntfLTKLKEECCLLAKKLEKVSLKSRSQIVRLSQEKRYLCDKLEKLQKRNDELEE 660
Cdd:TIGR02169 879 DLESR----LGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSE 935
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
228-409 |
2.89e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 2.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 228 ELERLKLTYEAKTDLLESQLMLLRKDLAEYQKTCEDLKERLKhkESLLAASASSRVGGLCLKCAQHEAvlsqTHSNVHIQ 307
Cdd:COG4942 66 ALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELA--ELLRALYRLGRQPPLALLLSPEDF----LDAVRRLQ 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 308 TIERLTKERDDLMSVLVSVRSSLAEAQKRETSAYEQVKHAVQMTEEANFEKTKALIQCEQLKSELERQTERLEKELASQQ 387
Cdd:COG4942 140 YLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQ 219
|
170 180
....*....|....*....|..
gi 568911232 388 EKRAVEKEMIKKEVAREREDAE 409
Cdd:COG4942 220 QEAEELEALIARLEAEAAAAAE 241
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
229-432 |
5.46e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.00 E-value: 5.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 229 LERLKLTYEAKTDLLESQLMLLRKDLAEYQKTCEDLKErlkhkesllaasassrvgglclkcaQHEAVLSQTHSNVHIQT 308
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQ-------------------------KNGLVDLSEEAKLLLQQ 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 309 IERLTKERDDLMSVLVSVRSSLAEAQKRETSAYEQVKHAVQMTEEANFEKtkaliQCEQLKSELERQTERLEKE---LAS 385
Cdd:COG3206 221 LSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRA-----QLAELEAELAELSARYTPNhpdVIA 295
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 568911232 386 QQEKRAVEKEMIKKEVAREREDAESKMLILSQNIAKLEAQVEKVTRE 432
Cdd:COG3206 296 LRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEAR 342
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
333-443 |
5.84e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 39.76 E-value: 5.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 333 AQKRETSAYEQVKHAVQMTE-EANFEKTKALIQC----EQLKSELERQTERLEKELAsQQEKRAVEKEMI----KKEVAR 403
Cdd:PRK12704 29 AEAKIKEAEEEAKRILEEAKkEAEAIKKEALLEAkeeiHKLRNEFEKELRERRNELQ-KLEKRLLQKEENldrkLELLEK 107
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 568911232 404 EREDAESKMLILSQNIAKLEAQVEKVTREKTAAVSHLEEI 443
Cdd:PRK12704 108 REEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERI 147
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
415-681 |
8.69e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 39.65 E-value: 8.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 415 LSQNIAKLEAQVEKVTR-----------EKTAAVSHLEEIQNHVASQEMDVTkvcgEMRFQLNKTKMEKDEVEKEHREYK 483
Cdd:TIGR02168 198 LERQLKSLERQAEKAERykelkaelrelELALLVLRLEELREELEELQEELK----EAEEELEELTAELQELEEKLEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 484 AKSHKdLEMKVQNevwmfQKQEIEKLRLELSESEQHVEQEQQKAARARQECLRVTELLGEAERQLHLTRLEKDSIQQSFs 563
Cdd:TIGR02168 274 LEVSE-LEEEIEE-----LQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKL- 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 564 NEAKAQALQAQQREQELTQKIQQMETQHDKTESEqyllLTSQNTFLTKLKEECCLLAKKLEK-VSLKSRSQ--IVRLSQE 640
Cdd:TIGR02168 347 EELKEELESLEAELEELEAELEELESRLEELEEQ----LETLRSKVAQLELQIASLNNEIERlEARLERLEdrRERLQQE 422
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 568911232 641 KRYLCDKLE-----KLQKRNDELEEQCIQHGRVHETMKERLRQLDK 681
Cdd:TIGR02168 423 IEELLKKLEeaelkELQAELEELEEELEELQEELERLEEALEELRE 468
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
310-673 |
9.91e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 39.35 E-value: 9.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 310 ERLTKERDDLMSVLVSVRSSLAEAQKRETSAYEQVKHAVQMTEEANFEKTKALIQCEQLKSELERQTERLEKELASQQEK 389
Cdd:PTZ00121 1243 KKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKK 1322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 390 RAVEKEMIKKEVAREREDAESKmlilsQNIAKLEAQVEKVTREKTAAVSHLEEIQNHVASQEMDVTKVCGEMRFQLNKTK 469
Cdd:PTZ00121 1323 KAEEAKKKADAAKKKAEEAKKA-----AEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAK 1397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 470 MEKDEVEKEHREYKAKSHkdlEMKVQNEVwmfQKQEIEKLRLELSESEQHVEQEQQKAARARQECLRVTELLGEAERQLH 549
Cdd:PTZ00121 1398 KKAEEDKKKADELKKAAA---AKKKADEA---KKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK 1471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568911232 550 LTRLEKDSIQQSFSNEAKAQALQAQQREQELTQKIQQMETQHDKTESEQYLLLTSQNTFLTKLKEECCLLAKKLEKVSLK 629
Cdd:PTZ00121 1472 ADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADEL 1551
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 568911232 630 SRSQIVRLSQEKRYLCDKLEKLQKRNDEL----EEQCIQHGRVHETMK 673
Cdd:PTZ00121 1552 KKAEELKKAEEKKKAEEAKKAEEDKNMALrkaeEAKKAEEARIEEVMK 1599
|
|
| |
