|
Name |
Accession |
Description |
Interval |
E-value |
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
89-617 |
8.59e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.77 E-value: 8.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 89 KKIFEQNDILSKELDTFNRVKLALEHLIKQTDyeqigdsllcLLKDLSDNESENRNLEEKVLEKEtYIRELSCLFQNEKE 168
Cdd:COG4913 221 PDTFEAADALVEHFDDLERAHEALEDAREQIE----------LLEPIRELAERYAAARERLAELE-YLRAALRLWFAQRR 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 169 SALKANRLsQSVKVVHDRLQRQIQKREAENEKLKEHVQSLETQIAKWNLQVKMNKQEAVAIKEASRQKavaLKKASKVYR 248
Cdd:COG4913 290 LELLEAEL-EELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEE---RERRRARLE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 249 QRLRHFTGDIERLASQVRDQEAKLSETVSASSDWKSQFEKiaiEKTELEVQIETMKKQIANLLEDLRKMETHGKNsceeI 328
Cdd:COG4913 366 ALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEE---ALAEAEAALRDLRRELRELEAEIASLERRKSN----I 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 329 LRKLHSLEDE-NEALNIENVKLKgtldalkdeVASvenELVELQEVEKRQKTLVEGY-RTQ-------VQKLQEAAEMVk 399
Cdd:COG4913 439 PARLLALRDAlAEALGLDEAELP---------FVG---ELIEVRPEEERWRGAIERVlGGFaltllvpPEHYAAALRWV- 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 400 srckNLLHENNLIITNKNKKLEKTVSCTSPLLLGNAVKAQVKATKGRNRMRGQVES--------NLKQVEQARSSFT--- 468
Cdd:COG4913 506 ----NRLHLRGRLVYERVRTGLPDPERPRLDPDSLAGKLDFKPHPFRAWLEAELGRrfdyvcvdSPEELRRHPRAITrag 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 469 -------------------------SAEQRLQECQEKLQRCKEKCAEQALTIRELQGQVDGNQSL------LTKLSLEEE 517
Cdd:COG4913 582 qvkgngtrhekddrrrirsryvlgfDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERrealqrLAEYSWDEI 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 518 NHL-IQLKCENLKEKLEQMDAEN---KELEKKLADQEECLKHSDLELKEKAAEYTALSRQLEAALEEgRQKVSEEVEKMS 593
Cdd:COG4913 662 DVAsAEREIAELEAELERLDASSddlAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEE-LDELQDRLEAAE 740
|
570 580
....*....|....*....|....*.
gi 568923217 594 SRERALQIKILD--LEAELRKKNEEQ 617
Cdd:COG4913 741 DLARLELRALLEerFAAALGDAVERE 766
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
127-392 |
2.02e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 2.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 127 SLLCLLKDLSDNESENRNLEEKVLEKETYIRELSCLFQNEKESALKANRLSQSVKVVHDRLQRQIQKREAENEKLKEHVQ 206
Cdd:TIGR02168 671 SILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 207 SLETQIAkwNLQVKMNKQEAVAIKEASRQKAVALKKASKvyRQRLRHFTGDIERLASQVRDQEAKLSETVSASSDWKSQF 286
Cdd:TIGR02168 751 QLSKELT--ELEAEIEELEERLEEAEEELAEAEAEIEEL--EAQIEQLKEELKALREALDELRAELTLLNEEAANLRERL 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 287 EKIAIEKTELEVQIETMKKQIANLLEDLRKME---THGKNSCEEILRKLHSLEDENEALNIENVKLKGTLDALKDEVASV 363
Cdd:TIGR02168 827 ESLERRIAATERRLEDLEEQIEELSEDIESLAaeiEELEELIEELESELEALLNERASLEEALALLRSELEELSEELREL 906
|
250 260
....*....|....*....|....*....
gi 568923217 364 ENELVELQEVEKRQKTLVEGYRTQVQKLQ 392
Cdd:TIGR02168 907 ESKRSELRRELEELREKLAQLELRLEGLE 935
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
129-656 |
1.16e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 55.12 E-value: 1.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 129 LCLLKDLSDNESENRN-LEEKVLEKETYIRELS---CLFQNE-KESALKANRLSQSVKVVHDRLQR---QIQKREAENEK 200
Cdd:pfam15921 316 MRQLSDLESTVSQLRSeLREAKRMYEDKIEELEkqlVLANSElTEARTERDQFSQESGNLDDQLQKllaDLHKREKELSL 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 201 LKEHVQSLETQIAKWNLQVKMNKQEaVAIKEASRQKAVALKKASKVYRQrlrhftGDIERLASQVRDQEAKLSETVSASS 280
Cdd:pfam15921 396 EKEQNKRLWDRDTGNSITIDHLRRE-LDDRNMEVQRLEALLKAMKSECQ------GQMERQMAAIQGKNESLEKVSSLTA 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 281 DWKSQFE---KIAIEKTELEVQIETMKKQIANLLEDLRKMETHGKNSCEEILR-------KLHSLED-ENEALNIENVKL 349
Cdd:pfam15921 469 QLESTKEmlrKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKlrsrvdlKLQELQHlKNEGDHLRNVQT 548
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 350 KgtLDALKDEVASvENELVEL--QEVEKRQKTLVEGYRT----QVQKLQEAAEMVKSRCKnlLHENNLIITNKNKKLEKT 423
Cdd:pfam15921 549 E--CEALKLQMAE-KDKVIEIlrQQIENMTQLVGQHGRTagamQVEKAQLEKEINDRRLE--LQEFKILKDKKDAKIREL 623
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 424 VSCTSPLLLG-----NAVKAQVKATKGRNRMRGQVesnLKQVEQARSSFTSaeqrLQECQEKLQR-CKEKCAEQALTIRE 497
Cdd:pfam15921 624 EARVSDLELEkvklvNAGSERLRAVKDIKQERDQL---LNEVKTSRNELNS----LSEDYEVLKRnFRNKSEEMETTTNK 696
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 498 LQGQVDGNQSLL-----TKLSLE-EENHLIQLKC---ENLKEKLEQMDAenkeLEKKLADQEECLKHSDLELKEKAAEYT 568
Cdd:pfam15921 697 LKMQLKSAQSELeqtrnTLKSMEgSDGHAMKVAMgmqKQITAKRGQIDA----LQSKIQFLEEAMTNANKEKHFLKEEKN 772
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 569 ALSRQLEAALEEgRQKVSEEVEKMSSRERALQIKILDLEAELRKKNEEQNQLVDKMNTKTQhQAICLKeIQHSLEKSE-- 646
Cdd:pfam15921 773 KLSQELSTVATE-KNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQ-ESVRLK-LQHTLDVKElq 849
|
570
....*....|....
gi 568923217 647 ----TRNESIKNYL 656
Cdd:pfam15921 850 gpgyTSNSSMKPRL 863
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
459-648 |
1.24e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.31 E-value: 1.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 459 QVEQARSSFTSAEQRLQECQEKLQRCKEKCAEQALTIRELQGQVDGNQSLLTKLSLEEEnhliqlkcENLKEKLEQMDAE 538
Cdd:COG4913 282 RLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRL--------EQLEREIERLERE 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 539 NKELEKKLADQEECLKHSDLELKEKAAEYTALSRQLEAALEEGRQKVSEEVEKMSSRERALQikilDLEAELRKKNEEQN 618
Cdd:COG4913 354 LEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALR----DLRRELRELEAEIA 429
|
170 180 190
....*....|....*....|....*....|
gi 568923217 619 QLVDKMNTKTQHQAICLKEIQHSLEKSETR 648
Cdd:COG4913 430 SLERRKSNIPARLLALRDALAEALGLDEAE 459
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
166-396 |
1.07e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.25 E-value: 1.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 166 EKESALKANRLSQSVKVVHDRLQ-RQIQKREAENEKLKEHVQSLETQIAKWNLQVkmnkQEAVAIKEASRQKAVALKKAS 244
Cdd:COG1196 208 QAEKAERYRELKEELKELEAELLlLKLRELEAELEELEAELEELEAELEELEAEL----AELEAELEELRLELEELELEL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 245 KVYRQRLRHFTGDIERLASQVRDQEAKLSETVSASSDWKSQFEKIAIEKTELEVQIETMKKQIANLLEDLRKMEthgkNS 324
Cdd:COG1196 284 EEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAE----AE 359
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568923217 325 CEEILRKLHSLEDENEALNIENVKLKGTLDALKDEVASVENELVELQEVEKRQKTLVEGYRTQVQKLQEAAE 396
Cdd:COG1196 360 LAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALA 431
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
256-620 |
1.07e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.99 E-value: 1.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 256 GDIERLASQVRDQEAKLSETVSASSDWKSQFEKIAIEKTELEVQIETMKKQIANLLEDLRKMETHGKNSCEEI------- 328
Cdd:PRK03918 203 EEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIeeleekv 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 329 --LRKLHSLEDENEALNIENVKLKGTLDALKDEVASVENELVELQEVEKR---QKTLVEGYRTQVQKLQEAAEMVKSRCK 403
Cdd:PRK03918 283 keLKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKEleeKEERLEELKKKLKELEKRLEELEERHE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 404 nlLHENNLIITNKNKKLEKTVSCTSPLLLGNAVKAQVKATKgrnrmrgQVESNLKQVEQARSSFTSAEQRLQECQEKLQR 483
Cdd:PRK03918 363 --LYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKE-------EIEEEISKITARIGELKKEIKELKKAIEELKK 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 484 CKEKCaeqALTIRELQGQVDGNqsLLTKLSLEEENhlIQLKCENLKEKLEQMDAENKELEKKLADQEECLKhsdleLKEK 563
Cdd:PRK03918 434 AKGKC---PVCGRELTEEHRKE--LLEEYTAELKR--IEKELKEIEEKERKLRKELRELEKVLKKESELIK-----LKEL 501
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 568923217 564 AAEYTALSRQLEAALEEGRQKVSEEVEKMSSRERALQIKILDLEAELRKKNEEQNQL 620
Cdd:PRK03918 502 AEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKL 558
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
208-599 |
1.28e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.98 E-value: 1.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 208 LETQIAKWNLQVKMNKQEAVAikEASRQKAVALKKASKVYRQRLRHFTGDIERLASQVRDQEAKLSETVSASSDWKSQFE 287
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKI--AELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 288 KIAIEKTELEVQIETMKKQIANLLEDLrkmethgknscEEILRKLHSLEDENEALNIENVKLKGTLDALKDEVASVENEL 367
Cdd:TIGR02168 751 QLSKELTELEAEIEELEERLEEAEEEL-----------AEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEA 819
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 368 VELQEVEKRQKTLVEGYRTQVQKLQEAAEMVKSRCKNLLHENNLIITNKNKKLEKTVSctspllLGNAVKAQVKATKGRN 447
Cdd:TIGR02168 820 ANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEA------LLNERASLEEALALLR 893
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 448 RMRGQVESNLKQVEQARSsftSAEQRLQECQEKLQRCKEKCAEQALTIRELQGQVDGNQSLLTKLSLEEENhliqlkceN 527
Cdd:TIGR02168 894 SELEELSEELRELESKRS---ELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALEN--------K 962
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568923217 528 LKEKLEQMDAENKELEKKLADQEECLKHSDLELKEKAAEYTALSRQLEaALEEGRQKVSEEVEKMSSRERAL 599
Cdd:TIGR02168 963 IEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKE-DLTEAKETLEEAIEEIDREARER 1033
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
458-654 |
1.45e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.48 E-value: 1.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 458 KQVEQARSSFTSAEQRLQECQEKLQRCKEKCAEQALTIRELQGQVDGNQSLLTKLSLEEENhliqlkcenLKEKLEQMDA 537
Cdd:COG1196 267 AELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAE---------LEEELEELEE 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 538 ENKELEKKLADQEECLKHSDLELKEKAAEYTALSRQLEAALEEGRQKVSEEVEKMSSRERALQiKILDLEAELRKKNEEQ 617
Cdd:COG1196 338 ELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAA-QLEELEEAEEALLERL 416
|
170 180 190
....*....|....*....|....*....|....*..
gi 568923217 618 NQLVDKMNTKTQHQAICLKEIQHSLEKSETRNESIKN 654
Cdd:COG1196 417 ERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE 453
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
295-612 |
1.90e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.22 E-value: 1.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 295 ELEVQIETMKKQIANLLEDLRKMETH---GKNSCEEILRKLHSLEDENEALNIENVKLKGTLDALKDEVASVENELVELQ 371
Cdd:TIGR02169 678 RLRERLEGLKRELSSLQSELRRIENRldeLSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVK 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 372 EVEKRQKTLVEGYRTQVQKLQEAAEMVKSRcknLLHENNLIITNKNKKLEKTVSctsplllgnavkaqvkatkgrnRMRG 451
Cdd:TIGR02169 758 SELKELEARIEELEEDLHKLEEALNDLEAR---LSHSRIPEIQAELSKLEEEVS----------------------RIEA 812
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 452 QVESNLKQVEQARSSFTSAEQRLQECQEKLQRCKEKCAEQALTIRELQGQVDGNQSLLTKL-----SLEEENHLIQLKCE 526
Cdd:TIGR02169 813 RLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELeaalrDLESRLGDLKKERD 892
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 527 NLKEKLEQMDAENKELEKKLadqeECLKHSDLELKEKAAeytALSRQLEAALEEGRQKVSEEVEKMSsrERALQIKILDL 606
Cdd:TIGR02169 893 ELEAQLRELERKIEELEAQI----EKKRKRLSELKAKLE---ALEEELSEIEDPKGEDEEIPEEELS--LEDVQAELQRV 963
|
....*.
gi 568923217 607 EAELRK 612
Cdd:TIGR02169 964 EEEIRA 969
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
326-623 |
3.68e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.44 E-value: 3.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 326 EEILRKLHSLEDENEALNIENVKLKGTLDALKDEVASVENELVELQEVEKRQKTLVEGYRTQVQKLQEAAEMVKsrcKNL 405
Cdd:TIGR02168 242 EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLE---RQL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 406 LHENNLIITNKNKKLEKtvsctsplllgNAVKAQVKATKgrNRMRGQVESNLKQVEQARSSFTSAEQRLQECQEKLQRCK 485
Cdd:TIGR02168 319 EELEAQLEELESKLDEL-----------AEELAELEEKL--EELKEELESLEAELEELEAELEELESRLEELEEQLETLR 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 486 EKCAEQALTIRELQGQVDGNQSLLTKLSLEEENhliqLKCENLKEKLEQMDAENKELEKKLADQEECLKHSDLELKEKAA 565
Cdd:TIGR02168 386 SKVAQLELQIASLNNEIERLEARLERLEDRRER----LQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEE 461
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 568923217 566 EYTALSRQLEAALEEgRQKVSEEVEKMSSRERALQikilDLEAELRKKNEEQNQLVDK 623
Cdd:TIGR02168 462 ALEELREELEEAEQA-LDAAERELAQLQARLDSLE----RLQENLEGFSEGVKALLKN 514
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
430-633 |
5.71e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.38 E-value: 5.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 430 LLLGNAVKAQVKATKGRNRMRGQVESNLKQVEQARSSFTSAEQRLQECQEKLQRCKEKCAEQALTIRELQGQVDGNQSLL 509
Cdd:COG4717 46 MLLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 510 TKLSLEEENHLIQLKCENLKEKLEQMDAENKELEKKLADQEECLKhsdlELKEKAAEYTALSRQLEAALEEGRQKVSEEV 589
Cdd:COG4717 126 QLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEA----ELAELQEELEELLEQLSLATEEELQDLAEEL 201
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 568923217 590 EKMSSRERALQIKILDLEAELRKKNEEQNQLVDKMNTKTQHQAI 633
Cdd:COG4717 202 EELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERL 245
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
137-653 |
1.67e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.21 E-value: 1.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 137 DNESENRNLEEKVLEKETYIRELSCLFQNEKESALKANRLSQSvkvvhDRLQRQIQKREAENEKLKEHVQSLE-----TQ 211
Cdd:PTZ00121 1238 DAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKA-----DELKKAEEKKKADEAKKAEEKKKADeakkkAE 1312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 212 IAKWNLQVKMNKQEAVAIKEASRQKAVALKKASKVYRQRLRHFTGDIERLASQVRDQEAKLSETVSASSDWKSQFEKIAi 291
Cdd:PTZ00121 1313 EAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK- 1391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 292 EKTELEVQIETMKKQIANL--LEDLRKMETHGKNSCEEILRKLHSLEDENEALNIENVKLKGTLDALKDEVASVENELVE 369
Cdd:PTZ00121 1392 KADEAKKKAEEDKKKADELkkAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK 1471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 370 LQEVEKR--QKTLVEGYRTQVQKLQEAAEMVKSRCKNLLHENNLIITNKNKKLEKTVSCTSPLLLGNAVKAQ--VKATKG 445
Cdd:PTZ00121 1472 ADEAKKKaeEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEekKKADEL 1551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 446 RNRMRGQVESNLKQVEQARSSFTSAEQRLQECQEkLQRCKEKCAEQALTIRELQGQVDGNQSlltKLSLEEENHLIQL-K 524
Cdd:PTZ00121 1552 KKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEE-AKKAEEARIEEVMKLYEEEKKMKAEEA---KKAEEAKIKAEELkK 1627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 525 CENLKEKLEQMDAENKELEKK---LADQEECLKHSDLELKEKAAEYTALSRQLEAALEEGRQKVSEEVEKMSSRERAlqi 601
Cdd:PTZ00121 1628 AEEEKKKVEQLKKKEAEEKKKaeeLKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKA--- 1704
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|..
gi 568923217 602 kildleAELRKKNEEQNQLVDKMNTKTQHQAICLKEIQHSLEKSETRNESIK 653
Cdd:PTZ00121 1705 ------EELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK 1750
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
447-660 |
1.68e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.13 E-value: 1.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 447 NRMRGQVESNLKQVEQARSSFTSAEQRLQECQEKLQRCKEKCAEQALTIRELQGQVDGNQSLLTKL------------SL 514
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLeqqkqilrerlaNL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 515 EEENHLIQLKCENLKEKLEQMDAENKELEKKLADQEECLKHSDLELKEKAAEYTALSRQ---LEAALEEGRQKVSE---E 588
Cdd:TIGR02168 315 ERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRleeLEEQLETLRSKVAQlelQ 394
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568923217 589 VEKMSSRERALQIKILDLEAELRKKNEEQNQLVDKM-NTKTQHQAICLKEIQHSLEKSETRNESIKNYLQFLQ 660
Cdd:TIGR02168 395 IASLNNEIERLEARLERLEDRRERLQQEIEELLKKLeEAELKELQAELEELEEELEELQEELERLEEALEELR 467
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
185-617 |
4.00e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.96 E-value: 4.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 185 DRLQRQIQKREAENEKLKEHVQSLETQIAKWNLQVKMNKQEAVAIKEAS---RQKAVALKKASKVYRQRLRHFTGDIERL 261
Cdd:PRK02224 310 EAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAeelREEAAELESELEEAREAVEDRREEIEEL 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 262 ASQVRDQEAKLSETVSASSDWKSQFEKIAIEKTELEVQIETMKKQIANLLEDLRKMET---HGK--------------NS 324
Cdd:PRK02224 390 EEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEAlleAGKcpecgqpvegsphvET 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 325 CEEILRKLHSLEDENEALNIENVKLKGTLDALKDEVASvENELVELQEVEKRQKTLVEGYRTQVQKLQEAAEMVKSRCKN 404
Cdd:PRK02224 470 IEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEA-EDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAE 548
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 405 LLHENNLIITNKNKKLEKTVSCTSPLLLGNAVKAQVKATkgRNRMRgQVESNLKQVEQARSSFTSAEQRLQECQEKLQRC 484
Cdd:PRK02224 549 LEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKER--IESLE-RIRTLLAAIADAEDEIERLREKREALAELNDER 625
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 485 KEKCAEQALTIRELQGQVDGNQslLTKLSLEEENHLIQLkcENLKEKLEQMDAENKELEKKLADQEECLKhsdlELKEKA 564
Cdd:PRK02224 626 RERLAEKRERKRELEAEFDEAR--IEEAREDKERAEEYL--EQVEEKLDELREERDDLQAEIGAVENELE----ELEELR 697
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 568923217 565 AEYTALSRQLEAAleegrQKVSEEVEkmssrerALQIKILDLEAELRKKNEEQ 617
Cdd:PRK02224 698 ERREALENRVEAL-----EALYDEAE-------ELESMYGDLRAELRQRNVET 738
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
470-657 |
4.73e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.85 E-value: 4.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 470 AEQRLQECQEKLQRCK-------------EKCAEQALTIRELQGQ---VDGNQSLLTKLSLEEENHLIQLKCENLKEKLE 533
Cdd:COG1196 177 AERKLEATEENLERLEdilgelerqleplERQAEKAERYRELKEElkeLEAELLLLKLRELEAELEELEAELEELEAELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 534 QMDAENKELEKKLADQEECLKHSDLELKEKAAEYTALSRQLE------AALEEGRQKVSEEVEKMSSRERALQIKILDLE 607
Cdd:COG1196 257 ELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELArleqdiARLEERRRELEERLEELEEELAELEEELEELE 336
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 568923217 608 AELRKKNEEQNQLVDKMNTKTQHQAICLKEIQHSLEKSETRNESIKNYLQ 657
Cdd:COG1196 337 EELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAE 386
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
442-653 |
5.44e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.59 E-value: 5.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 442 ATKGRNRMRGQVESNLKQVEQARSSFTSAEQRLQECQEKLQRCKEKCAEQALTIRELQGQVdgnqslltkLSLEEENHLI 521
Cdd:TIGR02168 696 LEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL---------TELEAEIEEL 766
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 522 QLKCENLKEKLEQMDAENKELEKKLADQEECLKHSDLELKEKAAEYTALSRQLeaaleegrQKVSEEVEKMSSRERALQI 601
Cdd:TIGR02168 767 EERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEA--------ANLRERLESLERRIAATER 838
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 568923217 602 KILDLEAELRKKNEEQNQLVDKMNTKTQHQAICLKEIQHSLEKSETRNESIK 653
Cdd:TIGR02168 839 RLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALA 890
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
151-394 |
5.55e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.55 E-value: 5.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 151 EKETYIRELSCLFQNEKESALKANRLSQSVkvvhdrLQRQIQKREAENEKLkehVQSLETQIAKwnLQVKMNKQEAVAIK 230
Cdd:COG3206 132 VKGSNVIEISYTSPDPELAAAVANALAEAY------LEQNLELRREEARKA---LEFLEEQLPE--LRKELEEAEAALEE 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 231 EASRQKAVALKKASKVYRQRLRHFTGDIERLASQVRDQEAKLSE-------------TVSAS---SDWKSQFEKIAIEKT 294
Cdd:COG3206 201 FRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAAlraqlgsgpdalpELLQSpviQQLRAQLAELEAELA 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 295 ELEV-------QIETMKKQIANLLEDLRkmethgknscEEILRKLHSLEDENEALNIENVKLKGTLDALKDEVASVENEL 367
Cdd:COG3206 281 ELSArytpnhpDVIALRAQIAALRAQLQ----------QEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELE 350
|
250 260
....*....|....*....|....*..
gi 568923217 368 VELQEVEKRQKTLVEGYRTQVQKLQEA 394
Cdd:COG3206 351 AELRRLEREVEVARELYESLLQRLEEA 377
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
134-623 |
6.35e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.67 E-value: 6.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 134 DLSDNESENRNLEEKVLEKETYIRELSCLFQNEKESALKANRLSQSVKVVHDRLQRQIQKREAENEKLKEHVQSLETqiA 213
Cdd:PTZ00121 1306 EAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADA--A 1383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 214 KWNLQVKMNKQEAVAIKEASRQKAVALKKASKVYRQrlrhfTGDIERLASQVRD--------QEAKLSETVSASSDWKSQ 285
Cdd:PTZ00121 1384 KKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKK-----ADEAKKKAEEKKKadeakkkaEEAKKADEAKKKAEEAKK 1458
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 286 FEKiAIEKTELEVQIETMKKQI--ANLLEDLRKMETHGKNSCEEILRKLHSLEDENEALNIEnvKLKGTLDALKDEVASV 363
Cdd:PTZ00121 1459 AEE-AKKKAEEAKKADEAKKKAeeAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAE--EAKKADEAKKAEEAKK 1535
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 364 ENELVELQEVEKRQKTlvegyrTQVQKLQEAAEMVKSRCKNLLHENNLIITNKN---KKLEKTVSCTSPLLLGNAVKAQV 440
Cdd:PTZ00121 1536 ADEAKKAEEKKKADEL------KKAEELKKAEEKKKAEEAKKAEEDKNMALRKAeeaKKAEEARIEEVMKLYEEEKKMKA 1609
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 441 KATKGRNRMRGQVESnLKQVEQARSSFTSAEQRLQECQEKLQRCKEKCAEQALTIRELQGQVDGNQSLLTKLSLEEENHl 520
Cdd:PTZ00121 1610 EEAKKAEEAKIKAEE-LKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDE- 1687
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 521 iQLKCENLK---------EKLEQMDAENKELEKKLADQEECLKHSDLELKEKAAEYTALSRQLEAALEEGRQKVSEEVEK 591
Cdd:PTZ00121 1688 -KKAAEALKkeaeeakkaEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEE 1766
|
490 500 510
....*....|....*....|....*....|..
gi 568923217 592 MSSRERALQIKILDLEAELRKKNEEQNQLVDK 623
Cdd:PTZ00121 1767 EKKAEEIRKEKEAVIEEELDEEDEKRRMEVDK 1798
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
195-615 |
6.57e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.19 E-value: 6.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 195 EAENEKLKEHVQSLETQIAKWN---LQVKMNKQEAVAIKEASRQKAVALKKASKVYRQRLRHFTGDIERLASQVRDQEAK 271
Cdd:PRK02224 306 DADAEAVEARREELEDRDEELRdrlEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREE 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 272 LSETVSASSDWKSQFEKIAIEKTELEVQIETMKKQIANLLEDLRKMETHGKNScEEILRKLHSLEDENE----ALNIENV 347
Cdd:PRK02224 386 IEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTA-RERVEEAEALLEAGKcpecGQPVEGS 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 348 KLKGTLDALKDEVASVENELVELQEvekrQKTLVEGYRTQVQKLQEAAEMVKSRCKNLLHENNLIITNKNKKLEKTVSCT 427
Cdd:PRK02224 465 PHVETIEEDRERVEELEAELEDLEE----EVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAE 540
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 428 SplllgnavkaqvkatkgrnrMRGQVESNLKQVEQARSSFTSAEQRLQECQEKLQRCKEKCAEQALTIRELQgqvdgnqS 507
Cdd:PRK02224 541 E--------------------LRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE-------R 593
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 508 LLTKLSLEEEnhlIQLKCENLKEKLEQMDAENKELEKKLADQEEclKHSDLELKEKAAEYTALSRQLEAAlEEGRQKVSE 587
Cdd:PRK02224 594 IRTLLAAIAD---AEDEIERLREKREALAELNDERRERLAEKRE--RKRELEAEFDEARIEEAREDKERA-EEYLEQVEE 667
|
410 420
....*....|....*....|....*...
gi 568923217 588 EVEKMSSRERALQIKILDLEAELRKKNE 615
Cdd:PRK02224 668 KLDELREERDDLQAEIGAVENELEELEE 695
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
470-615 |
7.49e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 45.92 E-value: 7.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 470 AEQRLQECQEKLQRCKEKCA----EQALTIR-ELQGQVDGNQSLLTKLsleeENHLIQlKCENLKEKLEQMDAENKELEK 544
Cdd:PRK12704 40 AKRILEEAKKEAEAIKKEALleakEEIHKLRnEFEKELRERRNELQKL----EKRLLQ-KEENLDRKLELLEKREEELEK 114
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568923217 545 KladqEECLKHSDLELKEKAAEYTALSRQLEAALE--------EGRQKVSEEVEKMSSRERALQIKILDLEAELRKKNE 615
Cdd:PRK12704 115 K----EKELEQKQQELEKKEEELEELIEEQLQELErisgltaeEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEADKK 189
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
448-660 |
1.35e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 1.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 448 RMRGQVESNLKQVEQARSSFTSAEQRLQECQEKLQRCKEKCAEQALTIRELQGQVDGNQSLLTKLsleeenhliQLKCEN 527
Cdd:TIGR02169 678 RLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEEL---------EEDLSS 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 528 LKEKLEQMDAENKELEKKLADQEECLKHSDLELKEKAAEYtalsrqleaaLEEGRQKVSEEVEKMSSRERALQIKILDLE 607
Cdd:TIGR02169 749 LEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARL----------SHSRIPEIQAELSKLEEEVSRIEARLREIE 818
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 568923217 608 AELRKKNEEQNQLVDKMNTKTQHQAIC---LKEIQHSLEKSETRNESIKNYLQFLQ 660
Cdd:TIGR02169 819 QKLNRLTLEKEYLEKEIQELQEQRIDLkeqIKSIEKEIENLNGKKEELEEELEELE 874
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
183-653 |
1.77e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.83 E-value: 1.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 183 VHDR-LQRQIQKREAENEKLKEHVQSLETQIAKWNLQVKMNKQEAVAIkeASRQKAValKKASKVYRQRLRHFTGDI--- 258
Cdd:pfam12128 227 IRDIqAIAGIMKIRPEFTKLQQEFNTLESAELRLSHLHFGYKSDETLI--ASRQEER--QETSAELNQLLRTLDDQWkek 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 259 -ERLASQVRDQEAKLS---ETVSASSDWKSQFEKIAIEKTELEVQIETMKKQIANLLEDLRKMETHGKNSCEEILRKLHS 334
Cdd:pfam12128 303 rDELNGELSAADAAVAkdrSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRS 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 335 LEDENealnienvklkgtldaLKDEVASVENELVELQEVEKRQKTLVEG-YRTQVQKLQEAAEMVKSRCKNLLHENNLII 413
Cdd:pfam12128 383 KIKEQ----------------NNRDIAGIKDKLAKIREARDRQLAVAEDdLQALESELREQLEAGKLEFNEEEYRLKSRL 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 414 TNKNKKLEKtVSCTSPLLLGNAVKAQVKatkgrNRMRGQVESNLKQVEQARSSFTSAEQRLQECQEKLQRCKEKCAEQAL 493
Cdd:pfam12128 447 GELKLRLNQ-ATATPELLLQLENFDERI-----ERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQS 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 494 TIRELQGQVDG------------------------NQSLLTKLSLEEENHLIQLKCEN----LKEKLEQMD-----AENK 540
Cdd:pfam12128 521 ALDELELQLFPqagtllhflrkeapdweqsigkviSPELLHRTDLDPEVWDGSVGGELnlygVKLDLKRIDvpewaASEE 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 541 ELEKKLADQEECLKHSDLELKEKAAEYTALSRQLEAALEE------GRQKVSEEVEKMSSRERALQIKILD-LEAELRKK 613
Cdd:pfam12128 601 ELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREetfartALKNARLDLRRLFDEKQSEKDKKNKaLAERKDSA 680
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 568923217 614 NEEQNQLVDKMNT-KTQHQAICLKEIQHSLEKSETRNESIK 653
Cdd:pfam12128 681 NERLNSLEAQLKQlDKKHQAWLEEQKEQKREARTEKQAYWQ 721
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
447-624 |
3.25e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.90 E-value: 3.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 447 NRMRGQVESNLKQVEQARSSFTSAEQRLQECQEKLQRCKEKCAEQALTIRELQGQVDGNQSLLTKLSLEEENhlIQLKCE 526
Cdd:TIGR02169 290 LRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAE--LKEELE 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 527 NLKEKLEQMDAENKELEKKLADQE---ECLKHSDLELKEKAAEYTALSRQLEAALEEGRQkvseEVEKMSSRERALQIKI 603
Cdd:TIGR02169 368 DLRAELEEVDKEFAETRDELKDYReklEKLKREINELKRELDRLQEELQRLSEELADLNA----AIAGIEAKINELEEEK 443
|
170 180
....*....|....*....|.
gi 568923217 604 LDLEAELRKKNEEQNQLVDKM 624
Cdd:TIGR02169 444 EDKALEIKKQEWKLEQLAADL 464
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
226-401 |
3.81e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 3.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 226 AVAIKEASRQKAVALKKASKVYRQRLRHFTGDIERLASQVRDQEAKLSETVSASSDWKSQFEKIAIEKTELEVQIETMKK 305
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 306 QIANLLED----LRKMETHGKNSCEEIL----------RKLHSLEDENEALNIENVKLKGTLDALKDEVASVENELVELQ 371
Cdd:COG4942 98 ELEAQKEElaelLRALYRLGRQPPLALLlspedfldavRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190
....*....|....*....|....*....|
gi 568923217 372 EVEKRQKTLVEGYRTQVQKLQEAAEMVKSR 401
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKE 207
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
117-405 |
4.93e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.52 E-value: 4.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 117 KQTDYEQIGDSLLCLLKDLSDNESEnrnLEEKVLEKETYIRELSCLFQNEKESALK-ANRLSQSVKVVHDRLQRQIQKRE 195
Cdd:TIGR02169 742 LEEDLSSLEQEIENVKSELKELEAR---IEELEEDLHKLEEALNDLEARLSHSRIPeIQAELSKLEEEVSRIEARLREIE 818
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 196 AENEKLKEHVQSLETQIakwnlQVKMNKQEAVAIKEASRQKAVALKKAskvyrqRLRHFTGDIERLASQVRDQEAKLSET 275
Cdd:TIGR02169 819 QKLNRLTLEKEYLEKEI-----QELQEQRIDLKEQIKSIEKEIENLNG------KKEELEEELEELEAALRDLESRLGDL 887
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 276 VSASSDWKSQFEKIAIEKTELEVQIETMKKQIANLLEDLRKMETHGKnsceEILRKLHSLEDENEALNIENvKLKGTLDA 355
Cdd:TIGR02169 888 KKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELS----EIEDPKGEDEEIPEEELSLE-DVQAELQR 962
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 568923217 356 LKDEVASVE--NELV--ELQEVEKRQKTLVEgyrtQVQKLQEAAEMVKSRCKNL 405
Cdd:TIGR02169 963 VEEEIRALEpvNMLAiqEYEEVLKRLDELKE----KRAKLEEERKAILERIEEY 1012
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
452-660 |
7.13e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.00 E-value: 7.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 452 QVESNLKQVEQARSSFTSAEQRLQECQEKLQRCKEKCAEQALTIRELQGQVDGNQSLLTKL--SLEEENHLIQLKCENLK 529
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAeaELAEAEEALLEAEAELA 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 530 EKLEQMDAENKELEKKLADQEECLKHSDLELKEKAAEYTALSRQLEA--ALEEGRQKVSEEVEKMSSRERALQIKILDLE 607
Cdd:COG1196 376 EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEEleELEEALAELEEEEEEEEEALEEAAEEEAELE 455
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 568923217 608 AELRKKNEEQNQLVDKMNTKTQHQAICLKEIQHSLEKSETRNESIKNYLQFLQ 660
Cdd:COG1196 456 EEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLE 508
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
459-629 |
1.22e-03 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 41.94 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 459 QVEQARSSFTSAEQRLQECQEKLQrckekcAEQALTIRELQGQVDGNQSLLTKLSLEEENhlIQLKCENLKEKLEQMDAE 538
Cdd:pfam05667 307 QFTNEAPAATSSPPTKVETEEELQ------QQREEELEELQEQLEDLESSIQELEKEIKK--LESSIKQVEEELEELKEQ 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 539 NKELEKK----------LADQEECLKHSDLELKEKAAEYTALSRQLEAA----LEEGRQKVSEEVEKMSSRER------A 598
Cdd:pfam05667 379 NEELEKQykvkkktldlLPDAEENIAKLQALVDASAQRLVELAGQWEKHrvplIEEYRALKEAKSNKEDESQRkleeikE 458
|
170 180 190
....*....|....*....|....*....|.
gi 568923217 599 LQIKILDLEAELRKKNEEQNQLVDKMNTKTQ 629
Cdd:pfam05667 459 LREKIKEVAEEAKQKEELYKQLVAEYERLPK 489
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
136-663 |
1.32e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.93 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 136 SDNESENRNLEEKVLEKETYIRELSCLFQNEKESALKANRLSQSVKVV------HDRLQRQIQKREAENEKLKEHVQSLE 209
Cdd:TIGR04523 159 NKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLkkkiqkNKSLESQISELKKQNNQLKDNIEKKQ 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 210 TQIAKWNLQVKMNKQEAVAIKEASRQKAVALKKASKvyrqRLRHFTGDIERLASQVRDQEAKLSETVSA-----SSDWKS 284
Cdd:TIGR04523 239 QEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQK----ELEQNNKKIKELEKQLNQLKSEISDLNNQkeqdwNKELKS 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 285 QFEKIAIEKTELEVQIETMKKQIANL---LEDLRKMETHGKNSCEEILRKLHSLEDENEALNIENVKLKGTLDALKDEVA 361
Cdd:TIGR04523 315 ELKNQEKKLEEIQNQISQNNKIISQLneqISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQIN 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 362 SVENELVELQEVEKRQKTLVEGYRTQVQKLQEAAEMVKSRcknLLHENNLIITNKNKKLEKTVSCTSPLLLGNAVKAQVK 441
Cdd:TIGR04523 395 DLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKET---IIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLK 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 442 ATKGR-NRMRGQVESNLKQVEQARSSFTSAEQRLQECQEKLQRCKEKCAEQALTIRELQGQVDGNQSLLTKLSLEEENHL 520
Cdd:TIGR04523 472 VLSRSiNKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDD 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 521 IQLKCENLKEKLEQMDAENKELEKKLADQEECLKHSDLELKEKAAEYTALSRQLEAaLEEGRQKVSEEVEKMSSRERALQ 600
Cdd:TIGR04523 552 FELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEE-KEKKISSLEKELEKAKKENEKLS 630
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568923217 601 IKILDLEAELRKKNEEQNQLVDKMNTKTQHQAICLKEIQHSLEKSETRNESIKNYLQFLQISY 663
Cdd:TIGR04523 631 SIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDWLKELSLHY 693
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
257-481 |
1.35e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.97 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 257 DIERLASQVRDQEAKLSETVSASSDWKSQFEKI-------AIEKTELEVQIETMKKQIANLLEDLRKMET---HGKNSCE 326
Cdd:TIGR02168 254 ELEELTAELQELEEKLEELRLEVSELEEEIEELqkelyalANEISRLEQQKQILRERLANLERQLEELEAqleELESKLD 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 327 EILRKLHSLEDENEALNIENVKLKGTLDALKDEVASVENELVELQEVEKRQKTLVEGYRTQVQKLQEAAEMVKSRCKNLL 406
Cdd:TIGR02168 334 ELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLE 413
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568923217 407 HENNLIITNK---NKKLEKTVSCTSPLLLGNAVKAQVKATKGRNRMRGQVESNLKQVEQARSSFTSAEQRLQECQEKL 481
Cdd:TIGR02168 414 DRRERLQQEIeelLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARL 491
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
450-660 |
1.40e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.85 E-value: 1.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 450 RGQVESNL----KQVEQARSSFT-SAEQRLQECQEKLQRCKEKCAEQALTIRELQGQVDGNQSLLTKLS-LEEENHLIQL 523
Cdd:COG1196 195 LGELERQLepleRQAEKAERYRElKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAeLEAELEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 524 KCENLKEKLEQMDAENKELEKKLADQEECLKHSDLELKEKAAEYTALSRQLEAaLEEGRQKVSEEVEKMSSRERALQIKI 603
Cdd:COG1196 275 ELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAE-LEEELEELEEELEELEEELEEAEEEL 353
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 568923217 604 LDLEAELRKKNEEQNQLVDKMNTKTQHQAICLKEIQHSLEKSETRNESIKNYLQFLQ 660
Cdd:COG1196 354 EEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEE 410
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
524-625 |
1.47e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.77 E-value: 1.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 524 KCENLKEKLEQMDAENKELEKKLADQEECLKHSDLELKEkaaeytalsrqleaALEEGRQKVSEEvEKMSSRERalqiKI 603
Cdd:COG2433 414 EIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSE--------------ARSEERREIRKD-REISRLDR----EI 474
|
90 100
....*....|....*....|..
gi 568923217 604 LDLEAELRKKNEEQNQLVDKMN 625
Cdd:COG2433 475 ERLERELEEERERIEELKRKLE 496
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
452-620 |
1.74e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 1.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 452 QVESNLKQVEQARSSF-------------TSAEQRLQECQEKLQRCKEKCAEQALTIRELQGQVDGNQSLLTKLSleeEN 518
Cdd:COG3206 186 ELRKELEEAEAALEEFrqknglvdlseeaKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELL---QS 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 519 HLIQlkceNLKEKLEQMDAENKELEKKLADQeeclkHSDL-ELKEKAAEytaLSRQLEAALEEGRQKVSEEVEKMSSRER 597
Cdd:COG3206 263 PVIQ----QLRAQLAELEAELAELSARYTPN-----HPDViALRAQIAA---LRAQLQQEAQRILASLEAELEALQAREA 330
|
170 180
....*....|....*....|...
gi 568923217 598 ALQIKILDLEAELRKKNEEQNQL 620
Cdd:COG3206 331 SLQAQLAQLEARLAELPELEAEL 353
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
163-503 |
1.98e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.59 E-value: 1.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 163 FQNEKESALK----ANRLSQSVKVVHDRLQRQIQKREAENEKlKEHVQSLETQIAKWNLQVKMNKqeavaIKEASRQKAV 238
Cdd:TIGR02169 168 FDRKKEKALEeleeVEENIERLDLIIDEKRQQLERLRREREK-AERYQALLKEKREYEGYELLKE-----KEALERQKEA 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 239 ALKKASKVyRQRLRHFTGDIERLASQVRDQEAKLSEtVSASSDWKSQFEKIAIEKT--ELEVQIETMKKQIANLLEDLRK 316
Cdd:TIGR02169 242 IERQLASL-EEELEKLTEEISELEKRLEEIEQLLEE-LNKKIKDLGEEEQLRVKEKigELEAEIASLERSIAEKERELED 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 317 METHGKNSCEEI---LRKLHSLEDENEALNIENVKLKGTLDALKDEVASVENELvelQEVEKRQKTLvegyRTQVQKLQE 393
Cdd:TIGR02169 320 AEERLAKLEAEIdklLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAEL---EEVDKEFAET----RDELKDYRE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 394 AAEMVKsrcknllHENNLIITNKNKKLEKTVSCTSPLLLGNA----VKAQVKATKGRNR-MRGQVESNLKQVEQARSSFT 468
Cdd:TIGR02169 393 KLEKLK-------REINELKRELDRLQEELQRLSEELADLNAaiagIEAKINELEEEKEdKALEIKKQEWKLEQLAADLS 465
|
330 340 350
....*....|....*....|....*....|....*
gi 568923217 469 SAEQRLQECQEKLQRCKEKCAEQALTIRELQGQVD 503
Cdd:TIGR02169 466 KYEQELYDLKEEYDRVEKELSKLQRELAEAEAQAR 500
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
89-409 |
2.61e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.16 E-value: 2.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 89 KKIFEQNDILSKELDTFNRVKLALEHLIKQTDYEQIGDsllcLLKDLSDNESENRNLEEKVLEKETYIRELSCLFQNEKE 168
Cdd:TIGR04523 274 KELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKE----LKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKK 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 169 SALKANRLSQSVKVVHDRLQRQIQKREAENEKLKEHVQSLETQIAKWNLQVKMNKQEavaikeaSRQKAVALKKASKVYR 248
Cdd:TIGR04523 350 ELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKL-------NQQKDEQIKKLQQEKE 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 249 QRLRhftgDIERLASQVRDQEAKLSETVSASSDWKSQFEKIAIEKTELEVQIETMKKQIANLLEDLRKMETHGKNSCEEI 328
Cdd:TIGR04523 423 LLEK----EIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKEL 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 329 L---RKLHSLEDENEALNIENVKLKGTLDALKDEVASVENELVELQEVEKRQKTLV--EGYRTQVQKLQEAAEMVKSRCK 403
Cdd:TIGR04523 499 KklnEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELkkENLEKEIDEKNKEIEELKQTQK 578
|
....*.
gi 568923217 404 NLLHEN 409
Cdd:TIGR04523 579 SLKKKQ 584
|
|
| prfA |
PRK00591 |
peptide chain release factor 1; Validated |
528-611 |
2.65e-03 |
|
peptide chain release factor 1; Validated
Pssm-ID: 234801 [Multi-domain] Cd Length: 359 Bit Score: 40.45 E-value: 2.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 528 LKEKLEQMDAENKELEKKLA------DQEECLK----HSDLE-LKEKAAEYTALSRQLEAALEEGRQKVSEEVEKMSSRE 596
Cdd:PRK00591 4 MLDKLEALEERYEELEALLSdpevisDQKRFRKlskeYAELEpIVEAYREYKQAQEDLEEAKEMLEEESDPEMREMAKEE 83
|
90
....*....|....*.
gi 568923217 597 -RALQIKILDLEAELR 611
Cdd:PRK00591 84 lKELEERLEELEEELK 99
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
163-625 |
2.91e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.19 E-value: 2.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 163 FQNEKESALKANRLSQSVKVVHDRL---QRQIQKREAENEKLKEHVQSLETQIAKW-----------NLQVKMNKQEAvA 228
Cdd:TIGR00606 569 FPNKKQLEDWLHSKSKEINQTRDRLaklNKELASLEQNKNHINNELESKEEQLSSYedklfdvcgsqDEESDLERLKE-E 647
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 229 IKEASRQKAVaLKKASKVYRQRLRHFTGDIE--------------RLASQVRDQEAKLSETVSASSDWKSQFEKIAIEKT 294
Cdd:TIGR00606 648 IEKSSKQRAM-LAGATAVYSQFITQLTDENQsccpvcqrvfqteaELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRD 726
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 295 ELEVQIETMKKQIANLLEDLRKMETHGKNSCEEILRKLHSLEDENEALNIENVKLKGTLDALKDeVASVENELVELQEVE 374
Cdd:TIGR00606 727 EMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTD-VTIMERFQMELKDVE 805
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 375 KRQKtlvegyrtqvqklQEAAEMVKSRCKNLLHENNLIITNKNKKLEKTVSctsplllgnAVKAQVKATKGRNRMRGQVE 454
Cdd:TIGR00606 806 RKIA-------------QQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVS---------KIELNRKLIQDQQEQIQHLK 863
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 455 SNLKQVEQARSSFTSAEQRLQECQEKLQRCKEKCAEQALTIRELQGQVDGNQSLLTKL---------SLEEENHLIQLKC 525
Cdd:TIGR00606 864 SKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDqqekeelisSKETSNKKAQDKV 943
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 526 ENLKEKLEQMDAENKELEKKLADQEeclkhsDLELKEKAAEYTALSRQLEAAlEEGRQKVSEEVEKMSS-------RERA 598
Cdd:TIGR00606 944 NDIKEKVKNIHGYMKDIENKIQDGK------DDYLKQKETELNTVNAQLEEC-EKHQEKINEDMRLMRQdidtqkiQERW 1016
|
490 500
....*....|....*....|....*....
gi 568923217 599 LQ--IKILDLEAELRKKNEEQNQLVDKMN 625
Cdd:TIGR00606 1017 LQdnLTLRKRENELKEVEEELKQHLKEMG 1045
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
132-580 |
4.20e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.14 E-value: 4.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 132 LKDLSDNESENRNLEEKVLEKETYIRELSclfqnEKESALKANRLSQSVKVVHDRLQRQIQKREAENEKLKEHVQSLETQ 211
Cdd:COG4717 80 LKEAEEKEEEYAELQEELEELEEELEELE-----AELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 212 IAKW-NLQVKMNKQEAvAIKEASRQKAVALKKASKVYRQRLRHFTGDIERLASQVRDQEAKLSetvsassdwksqfekia 290
Cdd:COG4717 155 LEELrELEEELEELEA-ELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELE----------------- 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 291 iektELEVQIETMKKQIANLLEDLRKMETHGKNSCEEILRKLHSLEDENEALNIENVKLKGTLDALKDEVASVeneLVEL 370
Cdd:COG4717 217 ----EAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGL---LALL 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 371 QEVEKRQKTLVEGYRTQVQKLQEAAEMVKSRCKNLLHENNLIITNKNKKLEKTVSctsplLLGNAVKAQVKATKGRNRMR 450
Cdd:COG4717 290 FLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLD-----RIEELQELLREAEELEEELQ 364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 451 GQVESNLKQVEQARSSFTSAEQrLQECQEKLQRCKEKCAEQALTIRELQGQVDGNQSLLTKLSLEEenhlIQLKCENLKE 530
Cdd:COG4717 365 LEELEQEIAALLAEAGVEDEEE-LRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEE----LEEELEELEE 439
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 568923217 531 KLEQMDAENKELEKKLADQEECLKH--SDLELKEKAAEYTALSRQLEAALEE 580
Cdd:COG4717 440 ELEELEEELEELREELAELEAELEQleEDGELAELLQELEELKAELRELAEE 491
|
|
| PrfA |
COG0216 |
Protein chain release factor RF1 [Translation, ribosomal structure and biogenesis]; Protein ... |
527-611 |
5.63e-03 |
|
Protein chain release factor RF1 [Translation, ribosomal structure and biogenesis]; Protein chain release factor RF1 is part of the Pathway/BioSystem: Translation factors
Pssm-ID: 439986 [Multi-domain] Cd Length: 356 Bit Score: 39.60 E-value: 5.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 527 NLKEKLEQMDAENKELEKKLADQE---------ECLK-HSDLE-LKEKAAEYTALSRQLEAALEEGRQKVSEEVEKMSSR 595
Cdd:COG0216 1 SMLDKLEALEERYEELEALLSDPEvisdqkrfrKLSKeYAELEpIVEAYREYKKLLEDIEEAKELLEEESDPEMREMAKE 80
|
90
....*....|....*..
gi 568923217 596 E-RALQIKILDLEAELR 611
Cdd:COG0216 81 ElEELEARLEELEEELK 97
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
438-615 |
5.66e-03 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 39.68 E-value: 5.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 438 AQVKATKGRNRMRGQVESNLKQVEQARSSftsAEQRLQECQEKLQRCKEKCAEQALTIRELQGQVDGNQSLLTK------ 511
Cdd:PRK11637 58 AKEKSVRQQQQQRASLLAQLKKQEEAISQ---ASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAqldaaf 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568923217 512 -----------LSLEEE-------------NHLIQLKCENLKEKLEQMDAENKELEKKLADQEECLkhSDLELKEKAAEY 567
Cdd:PRK11637 135 rqgehtglqliLSGEESqrgerilayfgylNQARQETIAELKQTREELAAQKAELEEKQSQQKTLL--YEQQAQQQKLEQ 212
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 568923217 568 TALSRQ-----LEAALEEGRQKVSEevekMSSRERALQIKILDLEAELRKKNE 615
Cdd:PRK11637 213 ARNERKktltgLESSLQKDQQQLSE----LRANESRLRDSIARAEREAKARAE 261
|
|
| |
