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Conserved domains on  [gi|568934112|ref|XP_006503963|]
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protein Dok-7 isoform X2 [Mus musculus]

Protein Classification

docking protein 7( domain architecture ID 10351510)

docking protein 7 is a probable muscle-intrinsic activator of MuSK (Muscle-Specific Protein Tyrosine Kinase) that plays an essential role in neuromuscular synaptogenesis

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PTB_DOK7 cd13165
Downstream of tyrosine kinase 7 phosphotyrosine-binding domain (PTBi); The Dok family adapters ...
71-171 1.93e-58

Downstream of tyrosine kinase 7 phosphotyrosine-binding domain (PTBi); The Dok family adapters are phosphorylated by different protein tyrosine kinases. Dok proteins are involved in processes such as modulation of cell differentiation and proliferation, as well as in control of the cell spreading and migration The Dok protein contains an N-terminal pleckstrin homology (PH) domain followed by a central phosphotyrosine binding (PTB) domain, which has a PH-like fold, and a proline- and tyrosine-rich C-terminal tail. The PH domain is binds to acidic phospholids and localizes proteins to the plasma membrane, while the PTB domain mediates protein-protein interactions by binding to phosphotyrosine-containing motifs. The C-terminal part of Dok contains multiple tyrosine phosphorylation sites that serve as potential docking sites for Src homology 2-containing proteins such as ras GTPase-activating protein and Nck, leading to inhibition of ras signaling pathway activation and the c-Jun N-terminal kinase (JNK) and c-Jun activation, respectively. There are 7 mammalian Dok members: Dok-1 to Dok-7. Dok-1 and Dok-2 act as negative regulators of the Ras-Erk pathway downstream of many immunoreceptor-mediated signaling systems, and it is believed that recruitment of p120 rasGAP by Dok-1 and Dok-2 is critical to their negative regulation. Dok-3 is a negative regulator of the activation of JNK and mobilization of Ca2+ in B-cell receptor-mediated signaling, interacting with SHIP-1 and Grb2. Dok-4- 6 play roles in protein tyrosine kinase(PTK)-mediated signaling in neural cells and Dok-7 is the key cytoplasmic activator of MuSK (Muscle-Specific Protein Tyrosine Kinase). PTB domains have a common PH-like fold and are found in various eukaryotic signaling molecules. This domain was initially shown to binds peptides with a NPXY motif with differing requirements for phosphorylation of the tyrosine, although more recent studies have found that some types of PTB domains can bind to peptides lack tyrosine residues altogether. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. PTB domains are classified into three groups: phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains. This cd is part of the IRS-like subgroup.


:

Pssm-ID: 269986  Cd Length: 101  Bit Score: 190.03  E-value: 1.93e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568934112  71 LGEVHRFHVTVAPGTKLESGPATLHLCNDILVLARDIPPTVMGQWKLSDLRRYGAVPNGFIFEGGTRCGYWAGVFFLSSA 150
Cdd:cd13165    1 LGEVHRFPVVVAPGTKLESGPATLHFCNDILVLARDVPPAVLGQWKLSDLRRYGAVPGGFIFEGGTRCGKWAGVFFLSTE 80
                         90       100
                 ....*....|....*....|.
gi 568934112 151 EGEQMSFLFDCIVRGISPTKG 171
Cdd:cd13165   81 EGEQISFLFDCIVRGISPTKG 101
PH-like super family cl17171
Pleckstrin homology-like domain; The PH-like family includes the PH domain, both the Shc-like ...
1-70 8.16e-35

Pleckstrin homology-like domain; The PH-like family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.


The actual alignment was detected with superfamily member cd14677:

Pssm-ID: 473070  Cd Length: 102  Bit Score: 126.83  E-value: 8.16e-35
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568934112   1 MLVYKDKCERSKGLRERSSLTLEDICGLEPALPYEGLAHTLAIICLSQAVMLGFDSHEAMCAWDTRIRYA 70
Cdd:cd14677   33 LLVYKDKSSRRKGLKEKASLTLEHFCGLESGFPLEKESNTLAIICLTQVVVLGFDSREALLEWDARIRYA 102
PHA03247 super family cl33720
large tegument protein UL36; Provisional
165-512 1.02e-03

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.23  E-value: 1.02e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568934112  165 GISPTKGPFGLRPVLPD----PSSGGPSASEERVAQEalealqlEKRLSLLSHSGRPGSGGDDRslssssseashsdisA 240
Cdd:PHA03247 2549 GDPPPPLPPAAPPAAPDrsvpPPRPAPRPSEPAVTSR-------ARRPDAPPQSARPRAPVDDR---------------G 2606
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568934112  241 SSRLTAwPEQSSSSAGTSQEGPGLVAAQGPGEAMLGASRPPLKPLRPRQLQEVGRqsssdsgiATGSHSSYSGSFSSYAG 320
Cdd:PHA03247 2607 DPRGPA-PPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGR--------VSRPRRARRLGRAAQAS 2677
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568934112  321 SNLDVWR---AGEEFGSLLSL---PPGASAPEPRLCACPPGAAEYQVPTSLRHHYDTPRSlrqAPRDPSPASQGSSDHGS 394
Cdd:PHA03247 2678 SPPQRPRrraARPTVGSLTSLadpPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPA---APAPPAVPAGPATPGGP 2754
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568934112  395 ATDLGGQAPTGCPSSWLGA-------RRRGQATEGPGSDAALPSPSPGESWEAGSPHAGPPPAFFLSCSICGGLKVMATS 467
Cdd:PHA03247 2755 ARPARPPTTAGPPAPAPPAapaagppRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSA 2834
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 568934112  468 SPGFTVTHPGSP-------GRVAADSPGPERPHSEMP-----TYVNIPISPISRPQL 512
Cdd:PHA03247 2835 QPTAPPPPPGPPppslplgGSVAPGGDVRRRPPSRSPaakpaAPARPPVRRLARPAV 2891
 
Name Accession Description Interval E-value
PTB_DOK7 cd13165
Downstream of tyrosine kinase 7 phosphotyrosine-binding domain (PTBi); The Dok family adapters ...
71-171 1.93e-58

Downstream of tyrosine kinase 7 phosphotyrosine-binding domain (PTBi); The Dok family adapters are phosphorylated by different protein tyrosine kinases. Dok proteins are involved in processes such as modulation of cell differentiation and proliferation, as well as in control of the cell spreading and migration The Dok protein contains an N-terminal pleckstrin homology (PH) domain followed by a central phosphotyrosine binding (PTB) domain, which has a PH-like fold, and a proline- and tyrosine-rich C-terminal tail. The PH domain is binds to acidic phospholids and localizes proteins to the plasma membrane, while the PTB domain mediates protein-protein interactions by binding to phosphotyrosine-containing motifs. The C-terminal part of Dok contains multiple tyrosine phosphorylation sites that serve as potential docking sites for Src homology 2-containing proteins such as ras GTPase-activating protein and Nck, leading to inhibition of ras signaling pathway activation and the c-Jun N-terminal kinase (JNK) and c-Jun activation, respectively. There are 7 mammalian Dok members: Dok-1 to Dok-7. Dok-1 and Dok-2 act as negative regulators of the Ras-Erk pathway downstream of many immunoreceptor-mediated signaling systems, and it is believed that recruitment of p120 rasGAP by Dok-1 and Dok-2 is critical to their negative regulation. Dok-3 is a negative regulator of the activation of JNK and mobilization of Ca2+ in B-cell receptor-mediated signaling, interacting with SHIP-1 and Grb2. Dok-4- 6 play roles in protein tyrosine kinase(PTK)-mediated signaling in neural cells and Dok-7 is the key cytoplasmic activator of MuSK (Muscle-Specific Protein Tyrosine Kinase). PTB domains have a common PH-like fold and are found in various eukaryotic signaling molecules. This domain was initially shown to binds peptides with a NPXY motif with differing requirements for phosphorylation of the tyrosine, although more recent studies have found that some types of PTB domains can bind to peptides lack tyrosine residues altogether. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. PTB domains are classified into three groups: phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains. This cd is part of the IRS-like subgroup.


Pssm-ID: 269986  Cd Length: 101  Bit Score: 190.03  E-value: 1.93e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568934112  71 LGEVHRFHVTVAPGTKLESGPATLHLCNDILVLARDIPPTVMGQWKLSDLRRYGAVPNGFIFEGGTRCGYWAGVFFLSSA 150
Cdd:cd13165    1 LGEVHRFPVVVAPGTKLESGPATLHFCNDILVLARDVPPAVLGQWKLSDLRRYGAVPGGFIFEGGTRCGKWAGVFFLSTE 80
                         90       100
                 ....*....|....*....|.
gi 568934112 151 EGEQMSFLFDCIVRGISPTKG 171
Cdd:cd13165   81 EGEQISFLFDCIVRGISPTKG 101
PH_DOK7 cd14677
Pleckstrin homology (PH) domain of Downstream of tyrosine kinase 7; The Dok family adapters ...
1-70 8.16e-35

Pleckstrin homology (PH) domain of Downstream of tyrosine kinase 7; The Dok family adapters are phosphorylated by different protein tyrosine kinases. Dok proteins are involved in processes such as modulation of cell differentiation and proliferation, as well as in control of the cell spreading and migration The Dok protein contains an N-terminal pleckstrin homology (PH) domain followed by a central phosphotyrosine binding (PTB) domain, which has a PH-like fold, and a proline- and tyrosine-rich C-terminal tail. The PH domain is binds to acidic phospholids and localizes proteins to the plasma membrane. There are 7 mammalian Dok members: Dok-1 to Dok-7. Dok-7 is the key cytoplasmic activator of MuSK (Muscle-Specific Protein Tyrosine Kinase). In general, PH domains have diverse functions, but are generally involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270196  Cd Length: 102  Bit Score: 126.83  E-value: 8.16e-35
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568934112   1 MLVYKDKCERSKGLRERSSLTLEDICGLEPALPYEGLAHTLAIICLSQAVMLGFDSHEAMCAWDTRIRYA 70
Cdd:cd14677   33 LLVYKDKSSRRKGLKEKASLTLEHFCGLESGFPLEKESNTLAIICLTQVVVLGFDSREALLEWDARIRYA 102
IRS pfam02174
PTB domain (IRS-1 type);
74-155 3.24e-07

PTB domain (IRS-1 type);


Pssm-ID: 460473  Cd Length: 99  Bit Score: 48.78  E-value: 3.24e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568934112   74 VHRFHVTVAP---GTKLE-SGPATLHLCNDILVLARDIPPTVMGQWKLSDLRRYGAVPNGFIFEGGTRCGYWAGVFFLSS 149
Cdd:pfam02174   1 VEVFPVTVRRtgaSERCGlSGSYRLCLTAEALTLDKLNTRVPLVSWPLTSLRRYGRDKNFFSFEAGRRCVTGEGEFWFQT 80

                  ....*.
gi 568934112  150 AEGEQM 155
Cdd:pfam02174  81 DDAEEI 86
PTBI smart00310
Phosphotyrosine-binding domain (IRS1-like);
80-155 5.72e-04

Phosphotyrosine-binding domain (IRS1-like);


Pssm-ID: 197644  Cd Length: 99  Bit Score: 39.32  E-value: 5.72e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568934112    80 TVAPGTKLESGPATLHLCNDILVLARDI-PPTVMGQWKLSDLRRYGAVPNGFIFEGGTRCGYWAGVFFLSSAEGEQM 155
Cdd:smart00310  10 TEGLERCPLSGSYRLRLTSEELVLWRGLnPRVELVVWPLLSLRRYGRDKVFFFFEAGRRCVSGPGEFTFQTVVAQEI 86
PHA03247 PHA03247
large tegument protein UL36; Provisional
165-512 1.02e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.23  E-value: 1.02e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568934112  165 GISPTKGPFGLRPVLPD----PSSGGPSASEERVAQEalealqlEKRLSLLSHSGRPGSGGDDRslssssseashsdisA 240
Cdd:PHA03247 2549 GDPPPPLPPAAPPAAPDrsvpPPRPAPRPSEPAVTSR-------ARRPDAPPQSARPRAPVDDR---------------G 2606
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568934112  241 SSRLTAwPEQSSSSAGTSQEGPGLVAAQGPGEAMLGASRPPLKPLRPRQLQEVGRqsssdsgiATGSHSSYSGSFSSYAG 320
Cdd:PHA03247 2607 DPRGPA-PPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGR--------VSRPRRARRLGRAAQAS 2677
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568934112  321 SNLDVWR---AGEEFGSLLSL---PPGASAPEPRLCACPPGAAEYQVPTSLRHHYDTPRSlrqAPRDPSPASQGSSDHGS 394
Cdd:PHA03247 2678 SPPQRPRrraARPTVGSLTSLadpPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPA---APAPPAVPAGPATPGGP 2754
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568934112  395 ATDLGGQAPTGCPSSWLGA-------RRRGQATEGPGSDAALPSPSPGESWEAGSPHAGPPPAFFLSCSICGGLKVMATS 467
Cdd:PHA03247 2755 ARPARPPTTAGPPAPAPPAapaagppRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSA 2834
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 568934112  468 SPGFTVTHPGSP-------GRVAADSPGPERPHSEMP-----TYVNIPISPISRPQL 512
Cdd:PHA03247 2835 QPTAPPPPPGPPppslplgGSVAPGGDVRRRPPSRSPaakpaAPARPPVRRLARPAV 2891
 
Name Accession Description Interval E-value
PTB_DOK7 cd13165
Downstream of tyrosine kinase 7 phosphotyrosine-binding domain (PTBi); The Dok family adapters ...
71-171 1.93e-58

Downstream of tyrosine kinase 7 phosphotyrosine-binding domain (PTBi); The Dok family adapters are phosphorylated by different protein tyrosine kinases. Dok proteins are involved in processes such as modulation of cell differentiation and proliferation, as well as in control of the cell spreading and migration The Dok protein contains an N-terminal pleckstrin homology (PH) domain followed by a central phosphotyrosine binding (PTB) domain, which has a PH-like fold, and a proline- and tyrosine-rich C-terminal tail. The PH domain is binds to acidic phospholids and localizes proteins to the plasma membrane, while the PTB domain mediates protein-protein interactions by binding to phosphotyrosine-containing motifs. The C-terminal part of Dok contains multiple tyrosine phosphorylation sites that serve as potential docking sites for Src homology 2-containing proteins such as ras GTPase-activating protein and Nck, leading to inhibition of ras signaling pathway activation and the c-Jun N-terminal kinase (JNK) and c-Jun activation, respectively. There are 7 mammalian Dok members: Dok-1 to Dok-7. Dok-1 and Dok-2 act as negative regulators of the Ras-Erk pathway downstream of many immunoreceptor-mediated signaling systems, and it is believed that recruitment of p120 rasGAP by Dok-1 and Dok-2 is critical to their negative regulation. Dok-3 is a negative regulator of the activation of JNK and mobilization of Ca2+ in B-cell receptor-mediated signaling, interacting with SHIP-1 and Grb2. Dok-4- 6 play roles in protein tyrosine kinase(PTK)-mediated signaling in neural cells and Dok-7 is the key cytoplasmic activator of MuSK (Muscle-Specific Protein Tyrosine Kinase). PTB domains have a common PH-like fold and are found in various eukaryotic signaling molecules. This domain was initially shown to binds peptides with a NPXY motif with differing requirements for phosphorylation of the tyrosine, although more recent studies have found that some types of PTB domains can bind to peptides lack tyrosine residues altogether. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. PTB domains are classified into three groups: phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains. This cd is part of the IRS-like subgroup.


Pssm-ID: 269986  Cd Length: 101  Bit Score: 190.03  E-value: 1.93e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568934112  71 LGEVHRFHVTVAPGTKLESGPATLHLCNDILVLARDIPPTVMGQWKLSDLRRYGAVPNGFIFEGGTRCGYWAGVFFLSSA 150
Cdd:cd13165    1 LGEVHRFPVVVAPGTKLESGPATLHFCNDILVLARDVPPAVLGQWKLSDLRRYGAVPGGFIFEGGTRCGKWAGVFFLSTE 80
                         90       100
                 ....*....|....*....|.
gi 568934112 151 EGEQMSFLFDCIVRGISPTKG 171
Cdd:cd13165   81 EGEQISFLFDCIVRGISPTKG 101
PH_DOK7 cd14677
Pleckstrin homology (PH) domain of Downstream of tyrosine kinase 7; The Dok family adapters ...
1-70 8.16e-35

Pleckstrin homology (PH) domain of Downstream of tyrosine kinase 7; The Dok family adapters are phosphorylated by different protein tyrosine kinases. Dok proteins are involved in processes such as modulation of cell differentiation and proliferation, as well as in control of the cell spreading and migration The Dok protein contains an N-terminal pleckstrin homology (PH) domain followed by a central phosphotyrosine binding (PTB) domain, which has a PH-like fold, and a proline- and tyrosine-rich C-terminal tail. The PH domain is binds to acidic phospholids and localizes proteins to the plasma membrane. There are 7 mammalian Dok members: Dok-1 to Dok-7. Dok-7 is the key cytoplasmic activator of MuSK (Muscle-Specific Protein Tyrosine Kinase). In general, PH domains have diverse functions, but are generally involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270196  Cd Length: 102  Bit Score: 126.83  E-value: 8.16e-35
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568934112   1 MLVYKDKCERSKGLRERSSLTLEDICGLEPALPYEGLAHTLAIICLSQAVMLGFDSHEAMCAWDTRIRYA 70
Cdd:cd14677   33 LLVYKDKSSRRKGLKEKASLTLEHFCGLESGFPLEKESNTLAIICLTQVVVLGFDSREALLEWDARIRYA 102
PTB_DOK4_DOK5_DOK6 cd13164
Downstream of tyrosine kinase 4, 5, and 6 proteins phosphotyrosine-binding domain (PTBi); The ...
76-155 2.29e-08

Downstream of tyrosine kinase 4, 5, and 6 proteins phosphotyrosine-binding domain (PTBi); The Dok family adapters are phosphorylated by different protein tyrosine kinases. Dok proteins are involved in processes such as modulation of cell differentiation and proliferation, as well as in control of the cell spreading and migration The Dok protein contains an N-terminal pleckstrin homology (PH) domain followed by a central phosphotyrosine binding (PTB) domain, which has a PH-like fold, and a proline- and tyrosine-rich C-terminal tail. The PH domain binds to acidic phospholids and localizes proteins to the plasma membrane, while the PTB domain mediates protein-protein interactions by binding to phosphotyrosine-containing motifs. The C-terminal part of Dok contains multiple tyrosine phosphorylation sites that serve as potential docking sites for Src homology 2-containing proteins such as ras GTPase-activating protein and Nck, leading to inhibition of ras signaling pathway activation and the c-Jun N-terminal kinase (JNK) and c-Jun activation, respectively. There are 7 mammalian Dok members: Dok-1 to Dok-7. Dok-1 and Dok-2 act as negative regulators of the Ras-Erk pathway downstream of many immunoreceptor-mediated signaling systems, and it is believed that recruitment of p120 rasGAP by Dok-1 and Dok-2 is critical to their negative regulation. Dok-3 is a negative regulator of the activation of JNK and mobilization of Ca2+ in B-cell receptor-mediated signaling, interacting with SHIP-1 and Grb2. Dok-4- 6 play roles in protein tyrosine kinase(PTK)-mediated signaling in neural cells and Dok-7 is the key cytoplasmic activator of MuSK (Muscle-Specific Protein Tyrosine Kinase). PTB domains have a common PH-like fold and are found in various eukaryotic signaling molecules. This domain was initially shown to binds peptides with a NPXY motif with differing requirements for phosphorylation of the tyrosine, although more recent studies have found that some types of PTB domains can bind to peptides lack tyrosine residues altogether. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. PTB domains are classified into three groups: phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains. This cd is part of the IRS-like subgroup.


Pssm-ID: 241318  Cd Length: 103  Bit Score: 52.04  E-value: 2.29e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568934112  76 RFHVTVAPGTKLE-SGPATLHLCNDILVLArDI--PPTVMGQWKLSDLRRYGAVPNGFIFEGGTRCGYWAGVFFLSSAEG 152
Cdd:cd13164    6 RFNVFLLPSPNLDvYGECLLQITHENIYLW-DIhnPRVKLVSWPLCSLRRYGRDSTWFTFEAGRMCDTGEGLFTFQTREG 84

                 ...
gi 568934112 153 EQM 155
Cdd:cd13164   85 EQI 87
IRS pfam02174
PTB domain (IRS-1 type);
74-155 3.24e-07

PTB domain (IRS-1 type);


Pssm-ID: 460473  Cd Length: 99  Bit Score: 48.78  E-value: 3.24e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568934112   74 VHRFHVTVAP---GTKLE-SGPATLHLCNDILVLARDIPPTVMGQWKLSDLRRYGAVPNGFIFEGGTRCGYWAGVFFLSS 149
Cdd:pfam02174   1 VEVFPVTVRRtgaSERCGlSGSYRLCLTAEALTLDKLNTRVPLVSWPLTSLRRYGRDKNFFSFEAGRRCVTGEGEFWFQT 80

                  ....*.
gi 568934112  150 AEGEQM 155
Cdd:pfam02174  81 DDAEEI 86
PTB_FRS2 cd01202
Fibroblast growth factor receptor substrate 2 phosphotyrosine-binding domain; FRS2 (also ...
72-159 5.03e-07

Fibroblast growth factor receptor substrate 2 phosphotyrosine-binding domain; FRS2 (also called Suc1-associated neurotrophic factor (SNT)-induced tyrosine-phosphorylated target) proteins are membrane-anchored adaptor proteins. They are composed of an N-terminal myristoylation site followed by a phosphotyrosine binding (PTB) domain, which has a PH-like fold, and a C-terminal effector domain containing multiple tyrosine and serine/threonine phosphorylation site. The FRS2/SNT proteins show increased tyrosine phosphorylation by activated receptors, such as fibroblast growth factor receptor (FGFR) and TrkA, recruit SH2 domain containing proteins such as Grb2, and mediate signals from activated receptors to a variety of downstream pathways. The PTB domains of the SNT proteins directly interact with the canonical NPXpY motif of TrkA in a phosphorylationdependent manner, they directly bind to the juxtamembrane region of FGFR in a phosphorylation-independent manner. PTB domains have a common PH-like fold and are found in various eukaryotic signaling molecules. This domain was initially shown to binds peptides with a NPXY motif with differing requirements for phosphorylation of the tyrosine, although more recent studies have found that some types of PTB domains can bind to peptides lack tyrosine residues altogether. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. PTB domains are classified into three groups: phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains. This cd is part of the IRS-like subgroup.


Pssm-ID: 269913  Cd Length: 92  Bit Score: 47.96  E-value: 5.03e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568934112  72 GEVHRFHVTVAPGTKLESGPATLHLCNDILVL-ARDIPPTVmgqWKLSDLRRYGAVPNGFIFEGGTRCGYWAGVFFLSSA 150
Cdd:cd01202    2 LHPNIFKVINVDDDGNELGSGILEVTETELILyQRGKEPVR---WPLLCLRRYGYDSNLFSFESGRRCATGEGIYAFKCK 78

                 ....*....
gi 568934112 151 EGEQMSFLF 159
Cdd:cd01202   79 RAEELFNLV 87
PTBI smart00310
Phosphotyrosine-binding domain (IRS1-like);
80-155 5.72e-04

Phosphotyrosine-binding domain (IRS1-like);


Pssm-ID: 197644  Cd Length: 99  Bit Score: 39.32  E-value: 5.72e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568934112    80 TVAPGTKLESGPATLHLCNDILVLARDI-PPTVMGQWKLSDLRRYGAVPNGFIFEGGTRCGYWAGVFFLSSAEGEQM 155
Cdd:smart00310  10 TEGLERCPLSGSYRLRLTSEELVLWRGLnPRVELVVWPLLSLRRYGRDKVFFFFEAGRRCVSGPGEFTFQTVVAQEI 86
PHA03247 PHA03247
large tegument protein UL36; Provisional
165-512 1.02e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.23  E-value: 1.02e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568934112  165 GISPTKGPFGLRPVLPD----PSSGGPSASEERVAQEalealqlEKRLSLLSHSGRPGSGGDDRslssssseashsdisA 240
Cdd:PHA03247 2549 GDPPPPLPPAAPPAAPDrsvpPPRPAPRPSEPAVTSR-------ARRPDAPPQSARPRAPVDDR---------------G 2606
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568934112  241 SSRLTAwPEQSSSSAGTSQEGPGLVAAQGPGEAMLGASRPPLKPLRPRQLQEVGRqsssdsgiATGSHSSYSGSFSSYAG 320
Cdd:PHA03247 2607 DPRGPA-PPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGR--------VSRPRRARRLGRAAQAS 2677
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568934112  321 SNLDVWR---AGEEFGSLLSL---PPGASAPEPRLCACPPGAAEYQVPTSLRHHYDTPRSlrqAPRDPSPASQGSSDHGS 394
Cdd:PHA03247 2678 SPPQRPRrraARPTVGSLTSLadpPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPA---APAPPAVPAGPATPGGP 2754
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568934112  395 ATDLGGQAPTGCPSSWLGA-------RRRGQATEGPGSDAALPSPSPGESWEAGSPHAGPPPAFFLSCSICGGLKVMATS 467
Cdd:PHA03247 2755 ARPARPPTTAGPPAPAPPAapaagppRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSA 2834
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 568934112  468 SPGFTVTHPGSP-------GRVAADSPGPERPHSEMP-----TYVNIPISPISRPQL 512
Cdd:PHA03247 2835 QPTAPPPPPGPPppslplgGSVAPGGDVRRRPPSRSPaakpaAPARPPVRRLARPAV 2891
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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