|
Name |
Accession |
Description |
Interval |
E-value |
| MYSc_Myo5 |
cd01380 |
class V myosin, motor domain; Myo5, also called heavy chain 12, myoxin, are dimeric myosins ... |
81-741 |
0e+00 |
|
class V myosin, motor domain; Myo5, also called heavy chain 12, myoxin, are dimeric myosins that transport a variety of intracellular cargo processively along actin filaments, such as melanosomes, synaptic vesicles, vacuoles, and mRNA. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. It also contains a IQ domain and a globular DIL domain. Myosin V is a class of actin-based motor proteins involved in cytoplasmic vesicle transport and anchorage, spindle-pole alignment and mRNA translocation. The protein encoded by this gene is abundant in melanocytes and nerve cells. Mutations in this gene cause Griscelli syndrome type-1 (GS1), Griscelli syndrome type-3 (GS3) and neuroectodermal melanolysosomal disease, or Elejalde disease. Multiple alternatively spliced transcript variants encoding different isoforms have been reported, but the full-length nature of some variants has not been determined. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Note that the Dictyostelium myoVs are not contained in this child group. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276831 [Multi-domain] Cd Length: 629 Bit Score: 1205.83 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 81 PAVLHNLRIRFAESKLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVS 160
Cdd:cd01380 1 PAVLHNLKVRFCQRNAIYTYCGIVLVAINPYEDLPIYGEDIIQAYSGQNMGELDPHIFAIAEEAYRQMARDEKNQSIIVS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 161 GESGAGKTVSARYAMRYFATVSKSSSN-AHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQIIGANMRT 239
Cdd:cd01380 81 GESGAGKTVSAKYAMRYFATVGGSSSGeTQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIEILFDKNYRIIGANMRT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 240 YLLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYTRMGGNTVIEGVNDRADMVETQKTFTLLGFKKDF 319
Cdd:cd01380 161 YLLEKSRVVFQAEEERNYHIFYQLCAAASLPELKELHLGSAEDFFYTNQGGSPVIDGVDDAAEFEETRKALTLLGISEEE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 320 QMDVFKILAAILHLGNVQVTTVGNERSSVSEDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVVKPMTRPQAINARD 399
Cdd:cd01380 241 QMEIFRILAAILHLGNVEIKATRNDSASISPDDEHLQIACELLGIDESQLAKWLCKRKIVTRSEVIVKPLTLQQAIVARD 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 400 ALAKKIYAHLFDFIVEQINQALHF--SGKQHTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKLEQEEYMK 477
Cdd:cd01380 321 ALAKHIYAQLFDWIVDRINKALASpvKEKQHSFIGVLDIYGFETFEVNSFEQFCINYANEKLQQQFNQHVFKLEQEEYVK 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 478 EDIPWTLIDFYDNQPVIDLIEAKMGILELLDEECLLPHGTDENWLQKLYNNFVNK-NSLFEKPRMSNSSFIIQHFADKVE 556
Cdd:cd01380 401 EEIEWSFIDFYDNQPCIDLIEGKLGILDLLDEECRLPKGSDENWAQKLYNQHLKKpNKHFKKPRFSNTAFIVKHFADDVE 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 557 YQCEGFLEKNRDTVYDMLVEILRASKFHlcaaffqespvpsspfgamitvksakqviKPntkhfrtTVGNKFRSSLYLLM 636
Cdd:cd01380 481 YQVEGFLEKNRDTVSEEHLNVLKASKNR-----------------------------KK-------TVGSQFRDSLILLM 524
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 637 ETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGILMTQQELSLSDKKEV 716
Cdd:cd01380 525 ETLNSTTPHYVRCIKPNDEKLPFTFDPKRVVQQLRACGVLETIRISAAGFPSRWTYEEFFSRYRVLLPSKEWLRDDKKKT 604
|
650 660
....*....|....*....|....*
gi 568961004 717 CKVVLHRLIQDSNQYQFGRTKIFFR 741
Cdd:cd01380 605 CENILENLILDPDKYQFGKTKIFFR 629
|
|
| MYSc |
smart00242 |
Myosin. Large ATPases; ATPase; molecular motor. Muscle contraction consists of a cyclical ... |
62-752 |
0e+00 |
|
Myosin. Large ATPases; ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Pssm-ID: 214580 [Multi-domain] Cd Length: 677 Bit Score: 959.69 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 62 NPDILVGENDLTALSYLHEPAVLHNLRIRFaESKLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVA 141
Cdd:smart00242 1 NPPKFEGVEDLVLLTYLNEPAVLHNLKKRY-LKDLIYTYIGLVLVAVNPYKQLPIYTDEVIKKYRGKSRGELPPHVFAIA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 142 EEAYKQMARNNRNQSIIVSGESGAGKTVSARYAMRYFATVSKSSSNA-HVEDKVLASNPITEAVGNAKTTRNDNSSRFGK 220
Cdd:smart00242 80 DNAYRNMLNDKENQSIIISGESGAGKTENTKKIMQYLASVSGSNTEVgSVEDQILESNPILEAFGNAKTLRNNNSSRFGK 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 221 YTEISFDERNQIIGANMRTYLLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYTRMGGNTVIEGVNDR 300
Cdd:smart00242 160 FIEIHFDAKGKIIGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKSPEDYRYLNQGGCLTVDGIDDA 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 301 ADMVETQKTFTLLGFKKDFQMDVFKILAAILHLGNVQVTTVGNE-RSSVSEDDSHLKVFCELLGLETSKVAQWLCNRKIV 379
Cdd:smart00242 240 EEFKETLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDnAASTVKDKEELSNAAELLGVDPEELEKALTKRKIK 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 380 TSSETVVKPMTRPQAINARDALAKKIYAHLFDFIVEQINQALHFSGKQHTFIGVLDIYGFETFDVNSFEQFCINYANEKL 459
Cdd:smart00242 320 TGGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINQSLSFKDGSTYFIGVLDIYGFEIFEVNSFEQLCINYANEKL 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 460 QQQFNLHVFKLEQEEYMKEDIPWTLIDFYDNQPVIDLIEAK-MGILELLDEECLLPHGTDENWLQKLYNNFvNKNSLFEK 538
Cdd:smart00242 400 QQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKpPGILSLLDEECRFPKGTDQTFLEKLNQHH-KKHPHFSK 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 539 P-RMSNSSFIIQHFADKVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFQESpvpsspfgamitVKSAKQVIKPnt 617
Cdd:smart00242 479 PkKKGRTEFIIKHYAGDVTYDVTGFLEKNKDTLSDDLIELLQSSKNPLIASLFPSG------------VSNAGSKKRF-- 544
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 618 khfrTTVGNKFRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYS 697
Cdd:smart00242 545 ----QTVGSQFKEQLNELMDTLNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLENIRIRRAGFPYRLPFDEFLQ 620
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 568961004 698 RYGILMTQQELSLS-DKKEVCKVVLHRLIQDSNQYQFGRTKIFFRAGQVAYLEKLR 752
Cdd:smart00242 621 RYRVLLPDTWPPWGgDAKKACEALLQSLGLDEDEYQLGKTKVFLRPGQLAELEELR 676
|
|
| Myosin_head |
pfam00063 |
Myosin head (motor domain); |
70-741 |
0e+00 |
|
Myosin head (motor domain);
Pssm-ID: 395017 [Multi-domain] Cd Length: 674 Bit Score: 912.43 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 70 NDLTALSYLHEPAVLHNLRIRFAeSKLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMA 149
Cdd:pfam00063 2 EDMVELSYLNEPSVLHNLKKRYK-SDLIYTYSGLVLVAVNPYKQLPIYSEDMIKAYRGKRRGELPPHIFAIADEAYRSML 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 150 RNNRNQSIIVSGESGAGKTVSARYAMRYFATVSKSSSN---AHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISF 226
Cdd:pfam00063 81 QDKENQSILISGESGAGKTENTKKIMQYLASVSGSGSAgnvGRLEEQILQSNPILEAFGNAKTVRNNNSSRFGKYIEIQF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 227 DERNQIIGANMRTYLLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYTRMGGNTVIEGVNDRADMVET 306
Cdd:pfam00063 161 DAKGDIVGGKIETYLLEKSRVVYQAEGERNYHIFYQLLAGASAQLKKELRLTNPKDYHYLSQSGCYTIDGIDDSEEFKIT 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 307 QKTFTLLGFKKDFQMDVFKILAAILHLGNVQVTTVGNERSSVSEDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVV 386
Cdd:pfam00063 241 DKAMDILGFSDEEQMGIFRIVAAILHLGNIEFKKERNDEQAVPDDTENLQKAASLLGIDSTELEKALCKRRIKTGRETVS 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 387 KPMTRPQAINARDALAKKIYAHLFDFIVEQINQALHF-SGKQHTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNL 465
Cdd:pfam00063 321 KPQNVEQANYARDALAKAIYSRLFDWLVDRINKSLDVkTIEKASFIGVLDIYGFEIFEKNSFEQLCINYVNEKLQQFFNH 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 466 HVFKLEQEEYMKEDIPWTLIDFYDNQPVIDLIEAK-MGILELLDEECLLPHGTDENWLQKLYNNFvNKNSLFEKPR-MSN 543
Cdd:pfam00063 401 HMFKLEQEEYVREGIEWTFIDFGDNQPCIDLIEKKpLGILSLLDEECLFPKATDQTFLDKLYSTF-SKHPHFQKPRlQGE 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 544 SSFIIQHFADKVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFQESPVPSSPFGAmitvKSAKQVIKPNTKHFRTT 623
Cdd:pfam00063 480 THFIIKHYAGDVEYNVEGFLEKNKDPLNDDLVSLLKSSSDPLLAELFPDYETAESAAAN----ESGKSTPKRTKKKRFIT 555
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 624 VGNKFRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGILM 703
Cdd:pfam00063 556 VGSQFKESLGELMKTLNSTNPHYIRCIKPNEKKRAGVFDNSLVLHQLRCNGVLEGIRIRRAGFPNRITFQEFVQRYRILA 635
|
650 660 670
....*....|....*....|....*....|....*....
gi 568961004 704 TQ-QELSLSDKKEVCKVVLHRLIQDSNQYQFGRTKIFFR 741
Cdd:pfam00063 636 PKtWPKWKGDAKKGCEAILQSLNLDKEEYQFGKTKIFFR 674
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
12-1252 |
0e+00 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 899.06 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 12 RVWIPDPEEVWKSAEIAK-DYRAGDRVLRLLLEDGmELEyPVDPGSLPPLR-NPDILVGENDLTALSYLHEPAVLHNLRI 89
Cdd:COG5022 11 GCWIPDEEKGWIWAEIIKeAFNKGKVTEEGKKEDG-ESV-SVKKKVLGNDRiKLPKFDGVDDLTELSYLNEPAVLHNLEK 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 90 RFaESKLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVSGESGAGKTV 169
Cdd:COG5022 89 RY-NNGQIYTYSGLVLIAVNPYRDLGIYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTIIISGESGAGKTE 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 170 SARYAMRYFATVSKSSSN--AHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQIIGANMRTYLLEKSRV 247
Cdd:COG5022 168 NAKRIMQYLASVTSSSTVeiSSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGAKIETYLLEKSRV 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 248 VFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYTRMGGNTVIEGVNDRADMVETQKTFTLLGFKKDFQMDVFKIL 327
Cdd:COG5022 248 VHQNKNERNYHIFYQLLAGDPEELKKLLLLQNPKDYIYLSQGGCDKIDGIDDAKEFKITLDALKTIGIDEEEQDQIFKIL 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 328 AAILHLGNVQVTTVGNERSSVSeDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVVKPMTRPQAINARDALAKKIYA 407
Cdd:COG5022 328 AAILHIGNIEFKEDRNGAAIFS-DNSVLDKACYLLGIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALAIRDSLAKALYS 406
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 408 HLFDFIVEQINQALHFSGKQHTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKLEQEEYMKEDIPWTLIDF 487
Cdd:COG5022 407 NLFDWIVDRINKSLDHSAAASNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDY 486
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 488 YDNQPVIDLIEAK--MGILELLDEECLLPHGTDENWLQKLYNNF-VNKNSLFEKPRMSNSSFIIQHFADKVEYQCEGFLE 564
Cdd:COG5022 487 FDNQPCIDLIEKKnpLGILSLLDEECVMPHATDESFTSKLAQRLnKNSNPKFKKSRFRDNKFVVKHYAGDVEYDVEGFLD 566
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 565 KNRDTVYDMLVEILRASKFHLCAAFFQEspvpsspfgamiTVKSAKQVIKPntkhfrtTVGNKFRSSLYLLMETLNATTP 644
Cdd:COG5022 567 KNKDPLNDDLLELLKASTNEFVSTLFDD------------EENIESKGRFP-------TLGSRFKESLNSLMSTLNSTQP 627
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 645 HYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGILM-----TQQELSLSDKKEVCKV 719
Cdd:COG5022 628 HYIRCIKPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQRYRILSpskswTGEYTWKEDTKNAVKS 707
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 720 VLHRLIQDSNQYQFGRTKIFFRAGQVAYLEKLRLDKLRQDCIMIQKHVRGWLQRRKFLRERQAALTIQRYFRGQQTVR-- 797
Cdd:COG5022 708 ILEELVIDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRlv 787
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 798 ----KAITATALKEAWAAIILQKYCRGYLvrnlyQLIRVATITIqahTRGFLARRRYRKLLQEHKAVILQKYARAWLARR 873
Cdd:COG5022 788 dyelKWRLFIKLQPLLSLLGSRKEYRSYL-----ACIIKLQKTI---KREKKLRETEEVEFSLKAEVLIQKFGRSLKAKK 859
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 874 RFQNIRRFVLNIQLTYRVQRLQKKLEDQNREnhglVEKLTSLAALRVGDLEKVQKLEAELE-------KAATHRHSYEEK 946
Cdd:COG5022 860 RFSLLKKETIYLQSAQRVELAERQLQELKID----VKSISSLKLVNLELESEIIELKKSLSsdlienlEFKTELIARLKK 935
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 947 GRRYRDTVEERLSKLQKHNAELELQRERAEqmLQEKSEELKEKMDKLTrQLFDDVQKEEQQRlvleKGFELKTQAYEKQI 1026
Cdd:COG5022 936 LLNNIDLEEGPSIEYVKLPELNKLHEVESK--LKETSEEYEDLLKKST-ILVREGNKANSEL----KNFKKELAELSKQY 1008
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1027 ESLREEIKALKDERSQL-HHQLEEGQVTSDRlkGEVARLSKQAKTISEFEKEIELLQAQKIDVekhvqSQKREMRERMSe 1105
Cdd:COG5022 1009 GALQESTKQLKELPVEVaELQSASKIISSES--TELSILKPLQKLKGLLLLENNQLQARYKAL-----KLRRENSLLDD- 1080
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1106 vtkqlLESYDIEDVRSRLSVedlehLNEDGELWFAYEGLKKATRVLESHFQSQKDCYEKEIEGLNFKVVHLSQEINHLQK 1185
Cdd:COG5022 1081 -----KQLYQLESTENLLKT-----INVKDLEVTNRNLVKPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLS 1150
|
1210 1220 1230 1240 1250 1260
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568961004 1186 LFREETDIN--ESIRHEVTRLTSENMMIPDFKQQISELERQKQDLESRLKEQAEKIEGKLEEPFSHLNR 1252
Cdd:COG5022 1151 VLQLELDGLfwEANLEALPSPPPFAALSEKRLYQSALYDEKSKLSSSEVNDLKNELIALFSKIFSGWPR 1219
|
|
| MYSc |
cd00124 |
Myosin motor domain superfamily; Myosin motor domain. The catalytic (head) domain has ATPase ... |
81-741 |
0e+00 |
|
Myosin motor domain superfamily; Myosin motor domain. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276950 [Multi-domain] Cd Length: 633 Bit Score: 821.84 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 81 PAVLHNLRIRFAESKlIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMG-DMDPHIFAVAEEAYKQMARNNRNQSIIV 159
Cdd:cd00124 1 AAILHNLRERYARDL-IYTYVGDILVAVNPFKWLPLYSEEVMEKYRGKGRSaDLPPHVFAVADAAYRAMLRDGQNQSILI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 160 SGESGAGKTVSARYAMRYFATVSKSSSNAH------VEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQII 233
Cdd:cd00124 80 SGESGAGKTETTKLVLKYLAALSGSGSSKSsssassIEQQILQSNPILEAFGNAKTVRNDNSSRFGKFIELQFDPTGRLV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 234 GANMRTYLLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEE----FNYTRMGGNTVIEGVNDRADMVETQKT 309
Cdd:cd00124 160 GASIETYLLEKSRVVSQAPGERNFHIFYQLLAGLSDGAREELKLELLLSyyylNDYLNSSGCDRIDGVDDAEEFQELLDA 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 310 FTLLGFKKDFQMDVFKILAAILHLGNVQVTTVGNE--RSSVSEDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVVK 387
Cdd:cd00124 240 LDVLGFSDEEQDSIFRILAAILHLGNIEFEEDEEDedSSAEVADDESLKAAAKLLGVDAEDLEEALTTRTIKVGGETITK 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 388 PMTRPQAINARDALAKKIYAHLFDFIVEQINQALHFSGKQH--TFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNL 465
Cdd:cd00124 320 PLTVEQAEDARDALAKALYSRLFDWLVNRINAALSPTDAAEstSFIGILDIFGFENFEVNSFEQLCINYANEKLQQFFNQ 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 466 HVFKLEQEEYMKEDIPWTLIDFYDNQPVIDLIEAK-MGILELLDEECLLPHGTDENWLQKLYNNFVNKNSLFEKPRMSNS 544
Cdd:cd00124 400 HVFKLEQEEYEEEGIDWSFIDFPDNQDCLDLIEGKpLGILSLLDEECLFPKGTDATFLEKLYSAHGSHPRFFSKKRKAKL 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 545 SFIIQHFADKVEYQCEGFLEKNRDTVYDMLVEILRASKfhlcaaffqespvpsspfgamitvksakqvikpntkhfrttv 624
Cdd:cd00124 480 EFGIKHYAGDVTYDADGFLEKNKDTLPPDLVDLLRSGS------------------------------------------ 517
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 625 gnKFRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGILMT 704
Cdd:cd00124 518 --QFRSQLDALMDTLNSTQPHFVRCIKPNDEKKPGLFDPELVLEQLRCAGVLEAVRIRRAGYPVRLPFDEFLKRYRILAP 595
|
650 660 670
....*....|....*....|....*....|....*...
gi 568961004 705 Q-QELSLSDKKEVCKVVLHRLIQDSNQYQFGRTKIFFR 741
Cdd:cd00124 596 GaTEKASDSKKAAVLALLLLLKLDSSGYQLGKTKVFLR 633
|
|
| MYSc_class_II |
cd01377 |
class II myosins, motor domain; Myosin motor domain in class II myosins. Class II myosins, ... |
81-741 |
0e+00 |
|
class II myosins, motor domain; Myosin motor domain in class II myosins. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. Thus, myosin II has two heads. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276951 [Multi-domain] Cd Length: 662 Bit Score: 740.43 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 81 PAVLHNLRIRFaESKLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVS 160
Cdd:cd01377 1 ASVLHNLRERY-YSDLIYTYSGLFCVAVNPYKRLPIYTEEVIDKYKGKRREEMPPHIFAIADNAYRNMLQDRENQSILIT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 161 GESGAGKTVSARYAMRYFATVSKSSSNAH--------VEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQI 232
Cdd:cd01377 80 GESGAGKTENTKKVIQYLASVAASSKKKKesgkkkgtLEDQILQANPILEAFGNAKTVRNNNSSRFGKFIRIHFGSTGKI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 233 IGANMRTYLLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYTRMGGNTVIEGVNDRADMVETQKTFTL 312
Cdd:cd01377 160 AGADIETYLLEKSRVVRQAKGERNYHIFYQLLSGADPELKEKLLLTGDPSYYFFLSQGELTIDGVDDAEEFKLTDEAFDI 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 313 LGFKKDFQMDVFKILAAILHLGNVQVTTVGNERSSVSEDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVVKPMTRP 392
Cdd:cd01377 240 LGFSEEEKMSIFKIVAAILHLGNIKFKQRRREEQAELDGTEEADKAAHLLGVNSSDLLKALLKPRIKVGREWVTKGQNKE 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 393 QAINARDALAKKIYAHLFDFIVEQINQALHFSGKQHTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKLEQ 472
Cdd:cd01377 320 QVVFSVGALAKALYERLFLWLVKRINKTLDTKSKRQYFIGVLDIAGFEIFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQ 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 473 EEYMKEDIPWTLIDF-YDNQPVIDLIEAK-MGILELLDEECLLPHGTDENWLQKLYNNFVNKNSLFEKPRMS--NSSFII 548
Cdd:cd01377 400 EEYKKEGIEWTFIDFgLDLQPTIDLIEKPnMGILSILDEECVFPKATDKTFVEKLYSNHLGKSKNFKKPKPKksEAHFIL 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 549 QHFADKVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFQESPVPSSPFGAMITVKSAkqvikpntkhFRtTVGNKF 628
Cdd:cd01377 480 KHYAGDVEYNIDGWLEKNKDPLNENVVALLKKSSDPLVASLFKDYEESGGGGGKKKKKGGS----------FR-TVSQLH 548
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 629 RSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGILMTQQEL 708
Cdd:cd01377 549 KEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKIDAPLVLHQLRCNGVLEGIRICRKGFPNRIIFAEFKQRYSILAPNAIP 628
|
650 660 670
....*....|....*....|....*....|....
gi 568961004 709 -SLSDKKEVCKVVLHRLIQDSNQYQFGRTKIFFR 741
Cdd:cd01377 629 kGFDDGKAACEKILKALQLDPELYRIGNTKVFFK 662
|
|
| MYSc_Myo11 |
cd01384 |
class XI myosin, motor domain; These plant-specific type XI myosin are involved in organelle ... |
81-741 |
0e+00 |
|
class XI myosin, motor domain; These plant-specific type XI myosin are involved in organelle transport. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle.
Pssm-ID: 276835 Cd Length: 647 Bit Score: 700.58 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 81 PAVLHNLRIRFaESKLIYTYSGIILVAMNPYKQLP-IYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIV 159
Cdd:cd01384 1 PGVLHNLKVRY-ELDEIYTYTGNILIAVNPFKRLPhLYDAHMMEQYKGAPLGELSPHVFAVADAAYRAMINEGKSQSILV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 160 SGESGAGKTVSARYAMRYFATVSK--SSSNAHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQIIGANM 237
Cdd:cd01384 80 SGESGAGKTETTKMLMQYLAYMGGraVTEGRSVEQQVLESNPLLEAFGNAKTVRNNNSSRFGKFVEIQFDDAGRISGAAI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 238 RTYLLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYTRMGGNTVIEGVNDRADMVETQKTFTLLGFKK 317
Cdd:cd01384 160 RTYLLERSRVVQVSDPERNYHCFYQLCAGAPPEDREKYKLKDPKQFHYLNQSKCFELDGVDDAEEYRATRRAMDVVGISE 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 318 DFQMDVFKILAAILHLGNVQVTTVGNERSSVSEDDS---HLKVFCELLGLETSKVAQWLCNRKIVTSSETVVKPMTRPQA 394
Cdd:cd01384 240 EEQDAIFRVVAAILHLGNIEFSKGEEDDSSVPKDEKsefHLKAAAELLMCDEKALEDALCKRVIVTPDGIITKPLDPDAA 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 395 INARDALAKKIYAHLFDFIVEQINQALHFSGKQHTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKLEQEE 474
Cdd:cd01384 320 TLSRDALAKTIYSRLFDWLVDKINRSIGQDPNSKRLIGVLDIYGFESFKTNSFEQFCINLANEKLQQHFNQHVFKMEQEE 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 475 YMKEDIPWTLIDFYDNQPVIDLIEAKM-GILELLDEECLLPHGTDENWLQKLYNNFVNkNSLFEKPRMSNSSFIIQHFAD 553
Cdd:cd01384 400 YTKEEIDWSYIEFVDNQDVLDLIEKKPgGIIALLDEACMFPRSTHETFAQKLYQTLKD-HKRFSKPKLSRTDFTIDHYAG 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 554 KVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFQESPVPSspfgamiTVKSAKqvikpntkhFrTTVGNKFRSSLY 633
Cdd:cd01384 479 DVTYQTDLFLDKNKDYVVAEHQALLNASKCPFVAGLFPPLPREG-------TSSSSK---------F-SSIGSRFKQQLQ 541
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 634 LLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGILMTQQELSLSDK 713
Cdd:cd01384 542 ELMETLNTTEPHYIRCIKPNNLLKPGIFENANVLQQLRCGGVLEAVRISCAGYPTRKPFEEFLDRFGLLAPEVLKGSDDE 621
|
650 660
....*....|....*....|....*...
gi 568961004 714 KEVCKVVLHRLiqDSNQYQFGRTKIFFR 741
Cdd:cd01384 622 KAACKKILEKA--GLKGYQIGKTKVFLR 647
|
|
| MYSc_Myo8 |
cd01383 |
class VIII myosin, motor domain; These plant-specific type VIII myosins has been associated ... |
81-741 |
0e+00 |
|
class VIII myosin, motor domain; These plant-specific type VIII myosins has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. It also contains IQ domains Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276834 Cd Length: 647 Bit Score: 684.05 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 81 PAVLHNLRIRFaESKLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDmdPHIFAVAEEAYKQMARNNRNQSIIVS 160
Cdd:cd01383 1 PSVLHNLEYRY-SQDIIYTKAGPVLIAVNPFKDVPLYGNEFITAYRQKLLDS--PHVYAVADTAYREMMRDEINQSIIIS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 161 GESGAGKTVSARYAMRYFATVSKSSSNahVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQIIGANMRTY 240
Cdd:cd01383 78 GESGAGKTETAKIAMQYLAALGGGSSG--IENEILQTNPILEAFGNAKTLRNDNSSRFGKLIDIHFDAAGKICGAKIQTY 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 241 LLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYTRMGGNTVIEGVNDRADMVETQKTFTLLGFKKDFQ 320
Cdd:cd01383 156 LLEKSRVVQLANGERSYHIFYQLCAGASPALREKLNLKSASEYKYLNQSNCLTIDGVDDAKKFHELKEALDTVGISKEDQ 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 321 MDVFKILAAILHLGNVQVTTVGNERSSVSEDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVVKPMTRPQAINARDA 400
Cdd:cd01383 236 EHIFQMLAAVLWLGNISFQVIDNENHVEVVADEAVSTAASLLGCNANDLMLALSTRKIQAGGDKIVKKLTLQQAIDARDA 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 401 LAKKIYAHLFDFIVEQINQALHFSGKQH-TFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKLEQEEYMKED 479
Cdd:cd01383 316 LAKAIYASLFDWLVEQINKSLEVGKRRTgRSISILDIYGFESFQKNSFEQLCINYANERLQQHFNRHLFKLEQEEYELDG 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 480 IPWTLIDFYDNQPVIDLIEAK-MGILELLDEECLLPHGTDENWLQKLyNNFVNKNSLFEKPRmsNSSFIIQHFADKVEYQ 558
Cdd:cd01383 396 IDWTKVDFEDNQECLDLIEKKpLGLISLLDEESNFPKATDLTFANKL-KQHLKSNSCFKGER--GGAFTIRHYAGEVTYD 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 559 CEGFLEKNRDTVYDMLVEILRASKFHLCAAF------FQESPVPSSPFGamitvKSAKQvikpntkhfRTTVGNKFRSSL 632
Cdd:cd01383 473 TSGFLEKNRDLLHSDLIQLLSSCSCQLPQLFaskmldASRKALPLTKAS-----GSDSQ---------KQSVATKFKGQL 538
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 633 YLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGILMTQQELSLSD 712
Cdd:cd01383 539 FKLMQRLENTTPHFIRCIKPNNKQLPGVFDQDLVLQQLRCCGVLEVVRISRSGYPTRMTHQEFARRYGFLLPEDVSASQD 618
|
650 660
....*....|....*....|....*....
gi 568961004 713 KKEVCKVVLHRLIQDSNQYQFGRTKIFFR 741
Cdd:cd01383 619 PLSTSVAILQQFNILPEMYQVGYTKLFFR 647
|
|
| MYSc_Myo7 |
cd01381 |
class VII myosin, motor domain; These monomeric myosins have been associated with functions in ... |
82-741 |
0e+00 |
|
class VII myosin, motor domain; These monomeric myosins have been associated with functions in sensory systems such as vision and hearing. Mammalian myosin VII has a tail with 2 MyTH4 domains, 2 FERM domains, and a SH3 domain. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276832 Cd Length: 648 Bit Score: 675.51 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 82 AVLHNLRIRFAEsKLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVSG 161
Cdd:cd01381 2 GILRNLLIRYRE-KLIYTYTGSILVAVNPYQILPIYTAEQIRLYRNKKIGELPPHIFAIADNAYTNMKRNKRDQCVVISG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 162 ESGAGKTVSARYAMRYFATVSKSSSnaHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQIIGANMRTYL 241
Cdd:cd01381 81 ESGAGKTESTKLILQYLAAISGQHS--WIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNKNGVIEGAKIEQYL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 242 LEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYTRMGGNTVIEGVNDRADMVETQKTFTLLGFKKDFQM 321
Cdd:cd01381 159 LEKSRIVSQAPDERNYHIFYCMLAGLSAEEKKKLELGDASDYYYLTQGNCLTCEGRDDAAEFADIRSAMKVLMFTDEEIW 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 322 DVFKILAAILHLGNVQ--VTTVGNERSSVSEDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVVKPMTRPQAINARD 399
Cdd:cd01381 239 DIFKLLAAILHLGNIKfeATVVDNLDASEVRDPPNLERAAKLLEVPKQDLVDALTTRTIFTRGETVVSPLSAEQALDVRD 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 400 ALAKKIYAHLFDFIVEQINQALH-FSGKQH--TFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKLEQEEYM 476
Cdd:cd01381 319 AFVKGIYGRLFIWIVNKINSAIYkPRGTDSsrTSIGVLDIFGFENFEVNSFEQLCINFANENLQQFFVRHIFKLEQEEYD 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 477 KEDIPWTLIDFYDNQPVIDLI-EAKMGILELLDEECLLPHGTDENWLQKLYNNFVNkNSLFEKPRM-SNSSFIIQHFADK 554
Cdd:cd01381 399 KEGINWQHIEFVDNQDVLDLIaLKPMNIMSLIDEESKFPKGTDQTMLEKLHSTHGN-NKNYLKPKSdLNTSFGINHFAGV 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 555 VEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFQESPVPSSpfgamitvKSAKQVIkpntkhfrtTVGNKFRSSLYL 634
Cdd:cd01381 478 VFYDTRGFLEKNRDTFSADLLQLVQSSKNKFLKQLFNEDISMGS--------ETRKKSP---------TLSSQFRKSLDQ 540
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 635 LMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGIL------MTQQEL 708
Cdd:cd01381 541 LMKTLSACQPFFVRCIKPNEYKKPMLFDRELCVRQLRYSGMMETIRIRKAGYPIRHTFEEFVERYRVLvpgippAHKTDC 620
|
650 660 670
....*....|....*....|....*....|...
gi 568961004 709 SLSDKKEVCKVVLHrliqDSNqYQFGRTKIFFR 741
Cdd:cd01381 621 RAATRKICCAVLGG----DAD-YQLGKTKIFLK 648
|
|
| MYSc_Myo1 |
cd01378 |
class I myosin, motor domain; Myosin I generates movement at the leading edge in cell motility, ... |
82-741 |
0e+00 |
|
class I myosin, motor domain; Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. There are 5 myosin subclasses with subclasses c/h, d/g, and a/b have an IQ domain and a TH1 domain. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276829 Cd Length: 652 Bit Score: 675.42 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 82 AVLHNLRIRFaESKLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVSG 161
Cdd:cd01378 2 AINENLKKRF-ENDEIYTYIGHVLISVNPFKDLGIYTDEVLESYRGKNRYEVPPHVFALADSAYRNMKSEKENQCVIISG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 162 ESGAGKTVSARYAMRYFATVSKSSSN--AHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQIIGANMRT 239
Cdd:cd01378 81 ESGAGKTEASKRIMQYIAAVSGGSESevERVKDMLLASNPLLEAFGNAKTLRNDNSSRFGKYMEIQFDFKGEPVGGHITN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 240 YLLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYTRMGGNTVIEGVNDRADMVETQKTFTLLGFKKDF 319
Cdd:cd01378 161 YLLEKSRVVGQIKGERNFHIFYQLLKGASQEYLQELGLQRPEQYYYYSKSGCFDVDGIDDAADFKEVLNAMKVIGFTEEE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 320 QMDVFKILAAILHLGNVQVTTVGNERSSVSeDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSE---TVVKPMTRPQAIN 396
Cdd:cd01378 241 QDSIFRILAAILHLGNIQFAEDEEGNAAIS-DTSVLDFVAYLLGVDPDQLEKALTHRTIETGGGgrsVYEVPLNVEQAAY 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 397 ARDALAKKIYAHLFDFIVEQINQALHFSGKQH-TFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKLEQEEY 475
Cdd:cd01378 320 ARDALAKAIYSRLFDWIVERINKSLAAKSGGKkKVIGVLDIYGFEIFEKNSFEQFCINYVNEKLQQIFIELTLKAEQEEY 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 476 MKEDIPWTLIDFYDNQPVIDLIEAK-MGILELLDEECLLPH-GTDENWLQKLyNNFVNKNSLFEKP----RMSNSSFIIQ 549
Cdd:cd01378 400 VREGIEWTPIKYFNNKIICDLIEEKpPGIFAILDDACLTAGdATDQTFLQKL-NQLFSNHPHFECPsghfELRRGEFRIK 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 550 HFADKVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFQEspvpsspfgamitvksakQVIKPNTKhfR-TTVGNKF 628
Cdd:cd01378 479 HYAGDVTYNVEGFLDKNKDLLFKDLKELMQSSSNPFLRSLFPE------------------GVDLDSKK--RpPTAGTKF 538
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 629 RSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGilmtqqel 708
Cdd:cd01378 539 KNSANALVETLMKKQPSYIRCIKPNDNKSPGEFDEELVLHQVKYLGLLENVRVRRAGFAYRQTYEKFLERYK-------- 610
|
650 660 670 680
....*....|....*....|....*....|....*....|..
gi 568961004 709 SLSDK---------KEVCKVVLHRLIQDSNQYQFGRTKIFFR 741
Cdd:cd01378 611 LLSPKtwpawdgtwQGGVESILKDLNIPPEEYQMGKTKIFIR 652
|
|
| Myo5c_CBD |
cd15476 |
Cargo binding domain of myosin 5C; Class V myosins are well studied unconventional myosins, ... |
1376-1743 |
0e+00 |
|
Cargo binding domain of myosin 5C; Class V myosins are well studied unconventional myosins, represented by three paralogs (Myo5a,b,c) in vertebrates. Their C-terminal cargo binding domains (CBDs) are important for the binding of a diverse set of cargos, including membrane vesicles, organelles, proteins and mRNA. The MyoV-CBDs directly interact with several adaptor proteins.MyoVb and myoVc areprimarily expressed in epithelial cells, and have been implicated as motors involved in recycling endosomes.
Pssm-ID: 271260 [Multi-domain] Cd Length: 332 Bit Score: 665.33 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1376 EDEGKLIQNLILDLKPRGVVVNMIPGLPAHILFMCVRYADSLNDANMLKSLMNSAINGIKHVVKEHFEDLEMLSFWLSNT 1455
Cdd:cd15476 1 EDEAKLIQNLILDLKPRGVVVNMIPGLPAHILFMCVRHADYLNDANKLKSLMNAIITGVKQVIKEHQEDFEMLSFWLSNT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1456 CHFLNCLKQYSGEEEFMKYNSPQQNKNCLNNFDLTEYRQILSDVAIRIYHQFIIVMENNLQPiivpgmleyeslqgisgl 1535
Cdd:cd15476 81 YHFLNCLKQYSGEEEFMKHNTPRQNKNCLKNFDLSEHRQILSDLAIRIYHQFISVMENNLQP------------------ 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1536 kptgfrkrsssiddtdayTMTSILQQLSYFYSTMCQNGLDPEIVRQAVKQLFYLVGAVTLNSLLLRKDMCSCRKGMQIRC 1615
Cdd:cd15476 143 ------------------TISSILQQLSYFYSTMCQHGMDPELIKQAVKQLFFLIGAVTLNSIFLRKDMCSCRKGMQIRC 204
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1616 NISFLEEWLKDKNVQSSLAKETLEPLSQAAWLLQVKKTTDSDAKEIAQCCTSLSAVQIIKILNSYTPIDDFEKRVNPSFV 1695
Cdd:cd15476 205 NISYLEEWLKEKNLQNSNAKETLEPLSQAAWLLQVNKTTDDDAKEICERCTELSAVQIVKILNSYTPIDDFEKRVTPSFV 284
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 568961004 1696 RKVQALLNNRGDSAQLMLDTKYLFQVTFPFTASPHALEMTQIPSSFKL 1743
Cdd:cd15476 285 RKVQSLLQNREGSSQLMLDTKYRFQVTFPFCPSPQALEMLQVPSSLKL 332
|
|
| MYSc_Myo22 |
cd14883 |
class XXII myosin, motor domain; These myosins possess an extended neck with multiple IQ ... |
82-741 |
0e+00 |
|
class XXII myosin, motor domain; These myosins possess an extended neck with multiple IQ motifs such as found in class V, VIII, XI, and XIII myosins. These myosins are defined by two tandem MyTH4 and FERM domains. The apicomplexan, but not diatom myosins contain 4-6 WD40 repeats near the end of the C-terminal tail which suggests a possible function of these myosins in signal transduction and transcriptional regulation. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276849 [Multi-domain] Cd Length: 661 Bit Score: 658.25 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 82 AVLHNLRIRFAeSKLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVSG 161
Cdd:cd14883 2 GINTNLKVRYK-KDLIYTYTGSILVAVNPYKELPIYTQDIVKQYFGKRMGALPPHIFALAEAAYTNMQEDGKNQSVIISG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 162 ESGAGKTVSARYAMRYFATVSKSSSnaHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQIIGANMRTYL 241
Cdd:cd14883 81 ESGAGKTETTKLILQYLCAVTNNHS--WVEQQILEANTILEAFGNAKTVRNDNSSRFGKFIEVCFDASGHIKGAIIQDYL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 242 LEKSRVVFQSENERNYHIFYQLCASAQQS-EFKH-LKLGSAEEFNYTRMGGNTVIEGVNDRADMVETQKTFTLLGFKKDF 319
Cdd:cd14883 159 LEQSRITFQAPGERNYHVFYQLLAGAKHSkELKEkLKLGEPEDYHYLNQSGCIRIDNINDKKDFDHLRLAMNVLGIPEEM 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 320 QMDVFKILAAILHLGNVQVTTVGNERSSVSEDDSH-LKVFCELLGLETSKVAQWLCNRKIVTSSETVVKPMTRPQAINAR 398
Cdd:cd14883 239 QEGIFSVLSAILHLGNLTFEDIDGETGALTVEDKEiLKIVAKLLGVDPDKLKKALTIRQINVRGNVTEIPLKVQEARDNR 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 399 DALAKKIYAHLFDFIVEQINQALHFSGKQHTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKLEQEEYMKE 478
Cdd:cd14883 319 DAMAKALYSRTFAWLVNHINSCTNPGQKNSRFIGVLDIFGFENFKVNSFEQLCINYTNEKLHKFFNHYVFKLEQEEYEKE 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 479 DIPWTLIDFYDNQPVIDLIEAK-MGILELLDEECLLPHGTDENWLQKLYNNFvNKNSLFEKP--RMSNSSFIIQHFADKV 555
Cdd:cd14883 399 GINWSHIVFTDNQECLDLIEKPpLGILKLLDEECRFPKGTDLTYLEKLHAAH-EKHPYYEKPdrRRWKTEFGVKHYAGEV 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 556 EYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFF----QESPVPSSPFGAMITVKSAkqvikpnTKHFRTTVGNKFRSS 631
Cdd:cd14883 478 TYTVQGFLDKNKDTQQDDLFDLMSRSKNKFVKELFtypdLLALTGLSISLGGDTTSRG-------TSKGKPTVGDTFKHQ 550
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 632 LYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGILMTQ-QELSL 710
Cdd:cd14883 551 LQSLVDVLSATQPWYVRCIKPNSLKEPNVFDDELVLAQLRYAGMLEIIRIRKEGFPIHLTFKEFVDRYLCLDPRaRSADH 630
|
650 660 670
....*....|....*....|....*....|.
gi 568961004 711 SDKKEVCKVVLHRLIQDSNQYQFGRTKIFFR 741
Cdd:cd14883 631 KETCGAVRALMGLGGLPEDEWQVGKTKVFLR 661
|
|
| MYSc_Myo4 |
cd14872 |
class IV myosin, motor domain; These myosins all possess a WW domain either N-terminal or ... |
81-741 |
0e+00 |
|
class IV myosin, motor domain; These myosins all possess a WW domain either N-terminal or C-terminal to their motor domain and a tail with a MyTH4 domain followed by a SH3 domain in some instances. The monomeric Acanthamoebas were the first identified members of this group and have been joined by Stramenopiles. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276839 Cd Length: 644 Bit Score: 610.62 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 81 PAVLHNLRIRFAESKlIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVS 160
Cdd:cd14872 1 AMIVHNLRKRFKNDQ-IYTNVGTILISVNPFKRLPLYTPTVMDQYMHKGPKEMPPHTYNIADDAYRAMIVDAMNQSILIS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 161 GESGAGKTVSARYAMRYFATVSKSSSNahVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQIIGANMRTY 240
Cdd:cd14872 80 GESGAGKTEATKQCLSFFAEVAGSTNG--VEQRVLLANPILEAFGNAKTLRNNNSSRFGKWVEIHFDNRGRICGASTENY 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 241 LLEKSRVVFQSENERNYHIFYQLCASAQQSefKHLKLGSAEEFNYTRMGGNTVIEGVNDRADMVETQKTFTLLGFKKDFQ 320
Cdd:cd14872 158 LLEKSRVVYQIKGERNFHIFYQLLASPDPA--SRGGWGSSAAYGYLSLSGCIEVEGVDDVADFEEVVLAMEQLGFDDADI 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 321 MDVFKILAAILHLGNVQVTTVGNERSSVSEDDSHLKVFCE---LLGLETSKVAQWLCNRKI-VTSSETVVKPMTRPQAIN 396
Cdd:cd14872 236 NNVMSLIAAILKLGNIEFASGGGKSLVSGSTVANRDVLKEvatLLGVDAATLEEALTSRLMeIKGCDPTRIPLTPAQATD 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 397 ARDALAKKIYAHLFDFIVEQINQALH-FSGKQHTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKLEQEEY 475
Cdd:cd14872 316 ACDALAKAAYSRLFDWLVKKINESMRpQKGAKTTFIGVLDIFGFEIFEKNSFEQLCINFTNEKLQQHFNQYTFKLEEALY 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 476 MKEDIPWTLIDFYDNQPVIDLIEAKM-GILELLDEECLLPHGTDENWLQKLYNNF-VNKNSLFEKPRMSNSSFIIQHFAD 553
Cdd:cd14872 396 QSEGVKFEHIDFIDNQPVLDLIEKKQpGLMLALDDQVKIPKGSDATFMIAANQTHaAKSTFVYAEVRTSRTEFIVKHYAG 475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 554 KVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFqespvpsspfgamitvksakQVIKPNTKHFRTTVGNKFRSSLY 633
Cdd:cd14872 476 DVTYDITGFLEKNKDTLQKDLYVLLSSSKNKLIAVLF--------------------PPSEGDQKTSKVTLGGQFRKQLS 535
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 634 LLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGILMTQQELSL-SD 712
Cdd:cd14872 536 ALMTALNATEPHYIRCVKPNQEKRARLFDGFMSLEQLRYAGVFEAVKIRKTGYPFRYSHERFLKRYRFLVKTIAKRVgPD 615
|
650 660
....*....|....*....|....*....
gi 568961004 713 KKEVCKVVLHRLIQDSNQYQFGRTKIFFR 741
Cdd:cd14872 616 DRQRCDLLLKSLKQDFSKVQVGKTRVLYR 644
|
|
| MYSc_Myo42 |
cd14903 |
class XLII myosin, motor domain; The class XLII myosins are comprised of Stramenopiles. Not ... |
81-741 |
0e+00 |
|
class XLII myosin, motor domain; The class XLII myosins are comprised of Stramenopiles. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276868 [Multi-domain] Cd Length: 658 Bit Score: 601.38 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 81 PAVLHNLRIRFAeSKLIYTYSGIILVAMNPYKQLP-IYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIV 159
Cdd:cd14903 1 AAILYNVKKRFL-RKLPYTYTGDICIAVNPYQWLPeLYTEEQHSKYLNKPKEELPPHVYATSVAAYNHMKRSGRNQSILV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 160 SGESGAGKTVSARYAMRYFATVSKSSSNAHVEdKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQIIGANMRT 239
Cdd:cd14903 80 SGESGAGKTETTKILMNHLATIAGGLNDSTIK-KIIEVNPLLESFGNAKTVRNDNSSRFGKFTQLQFDKNGTLVGAKCRT 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 240 YLLEKSRVVFQSENERNYHIFYQLCASAQQSEfkHLKLGSAEEFNYTRMGGNTVIEGVNDRADMVETQKTFTLLGFKKDF 319
Cdd:cd14903 159 YLLEKTRVISHERPERNYHIFYQLLASPDVEE--RLFLDSANECAYTGANKTIKIEGMSDRKHFARTKEALSLIGVSEEK 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 320 QMDVFKILAAILHLGNVQVTTVGN--ERSSVSEDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVVKPMTRPQAINA 397
Cdd:cd14903 237 QEVLFEVLAGILHLGQLQIQSKPNddEKSAIAPGDQGAVYATKLLGLSPEALEKALCSRTMRAAGDVYTVPLKKDQAEDC 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 398 RDALAKKIYAHLFDFIVEQINQALHFSGKQHTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKLEQEEYMK 477
Cdd:cd14903 317 RDALAKAIYSNVFDWLVATINASLGNDAKMANHIGVLDIFGFEHFKHNSFEQFCINYANEKLQQKFTQDVFKTVQIEYEE 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 478 EDIPWTLIDFYDNQPVIDLIEAKMGILELLDEECLLPHGTDENWLQKLYNNFVNKNSLFEKPRMSNSSFIIQHFADKVEY 557
Cdd:cd14903 397 EGIRWAHIDFADNQDVLAVIEDRLGIISLLNDEVMRPKGNEESFVSKLSSIHKDEQDVIEFPRTSRTQFTIKHYAGPVTY 476
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 558 QCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFQESPVPSSPFGAMITVKSAKQVIKPNTKhfrTTVGNKFRSSLYLLME 637
Cdd:cd14903 477 ESLGFLEKHKDALLPDLSDLMRGSSKPFLRMLFKEKVESPAAASTSLARGARRRRGGALTT---TTVGTQFKDSLNELMT 553
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 638 TLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGILMTQQELSLSDKKEVC 717
Cdd:cd14903 554 TIRSTNVHYVRCIKPNSIKSPTELDHLMVVSQLRCAGVIEAIRISRAAYPNRLLHEEFLDKFWLFLPEGRNTDVPVAERC 633
|
650 660
....*....|....*....|....*
gi 568961004 718 KVVLHRL-IQDSNQYQFGRTKIFFR 741
Cdd:cd14903 634 EALMKKLkLESPEQYQMGLTRIYFQ 658
|
|
| MYSc_Myo6 |
cd01382 |
class VI myosin, motor domain; Myosin VI is a monomeric myosin, which moves towards the ... |
84-741 |
0e+00 |
|
class VI myosin, motor domain; Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins which moves towards the plus-end of actin filaments. It is thought that myosin VI, unlike plus-end directed myosins, does not use a pure lever arm mechanism, but instead steps with a mechanism analogous to the kinesin neck-linker uncoupling model. It has been implicated in a myriad of functions including: the transport of cytoplasmic organelles, maintenance of normal Golgi morphology, endocytosis, secretion, cell migration, border cell migration during development, and in cancer metastasis playing roles in deafness and retinal development among others. While how this is accomplished is largely unknown there are several interacting proteins that have been identified such as disabled homolog 2 (DAB2), GIPC1, synapse-associated protein 97 (SAP97; also known as DLG1) and optineurin, which have been found to target myosin VI to different cellular compartments. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276833 Cd Length: 649 Bit Score: 594.61 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 84 LHNLRIRFAESKlIYTYSGIILVAMNPYKQLP-IYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVSGE 162
Cdd:cd01382 4 LNNIRVRYSKDK-IYTYVANILIAVNPYFDIPkLYSSETIKSYQGKSLGTLPPHVFAIADKAYRDMKVLKQSQSIIVSGE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 163 SGAGKTVSARYAMRYFaTVSKSSSNAHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQIIGANMRTYLL 242
Cdd:cd01382 83 SGAGKTESTKYILRYL-TESWGSGAGPIEQRILEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 243 EKSRVVFQSENERNYHIFYQLCASAQQSEFKHLklgsaeefnytrmggnTVIEGVNDRADMVETQKTFTLLGFKKDFQMD 322
Cdd:cd01382 162 EKSRICVQSKEERNYHIFYRLCAGAPEDLREKL----------------LKDPLLDDVGDFIRMDKAMKKIGLSDEEKLD 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 323 VFKILAAILHLGNVQVTTVGNER---SSVSEDDSH-LKVFCELLGLETSKVAQWLCNRKIVTSSE----TVVK-PMTRPQ 393
Cdd:cd01382 226 IFRVVAAVLHLGNIEFEENGSDSgggCNVKPKSEQsLEYAAELLGLDQDELRVSLTTRVMQTTRGgakgTVIKvPLKVEE 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 394 AINARDALAKKIYAHLFDFIVEQINQALHFSGKQHtFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKLEQE 473
Cdd:cd01382 306 ANNARDALAKAIYSKLFDHIVNRINQCIPFETSSY-FIGVLDIAGFEYFEVNSFEQFCINYCNEKLQQFFNERILKEEQE 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 474 EYMKEDIPWTLIDFYDNQPVIDLIEAKM-GILELLDEECLLPHGTDENWLQKLYNNFvNKNSLFEKPRMSNSS------- 545
Cdd:cd01382 385 LYEKEGLGVKEVEYVDNQDCIDLIEAKLvGILDLLDEESKLPKPSDQHFTSAVHQKH-KNHFRLSIPRKSKLKihrnlrd 463
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 546 ---FIIQHFADKVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFQESPVPSSpfgamitvKSAKQVIKPNTKhfrt 622
Cdd:cd01382 464 degFLIRHFAGAVCYETAQFIEKNNDALHASLESLICESKDKFIRSLFESSTNNNK--------DSKQKAGKLSFI---- 531
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 623 TVGNKFRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGIL 702
Cdd:cd01382 532 SVGNKFKTQLNLLMDKLRSTGTSFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRTSFHDLYNMYKKY 611
|
650 660 670
....*....|....*....|....*....|....*....
gi 568961004 703 MTqQELSLSDKKEVCKVVLHRLIQDSNQYQFGRTKIFFR 741
Cdd:cd01382 612 LP-PKLARLDPRLFCKALFKALGLNENDFKFGLTKVFFR 649
|
|
| MYSc_Myo9 |
cd01385 |
class IX myosin, motor domain; Myosin IX is a processive single-headed motor, which might play ... |
84-741 |
0e+00 |
|
class IX myosin, motor domain; Myosin IX is a processive single-headed motor, which might play a role in signalling. It has a N-terminal RA domain, an IQ domain, a C1_1 domain, and a RhoGAP domain. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276836 [Multi-domain] Cd Length: 690 Bit Score: 588.58 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 84 LHNLRIRFAESKlIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVSGES 163
Cdd:cd01385 4 LENLRARFKHGK-IYTYVGSILIAVNPFKFLPIYNPKYVKMYQNRRLGKLPPHIFAIADVAYHAMLRKKKNQCIVISGES 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 164 GAGKTVSARYAMRYFATVSKSSSNAHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQIIGANMRTYLLE 243
Cdd:cd01385 83 GSGKTESTNFLLHHLTALSQKGYGSGVEQTILGAGPVLEAFGNAKTAHNNNSSRFGKFIQVNYRENGMVRGAVVEKYLLE 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 244 KSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYTRMGGNTVIEGVNDRADMVETQKTFTLLGFKKDFQMDV 323
Cdd:cd01385 163 KSRIVSQEKNERNYHVFYYLLAGASEEERKELHLKQPEDYHYLNQSDCYTLEGEDEKYEFERLKQAMEMVGFLPETQRQI 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 324 FKILAAILHLGNVQV---TTVGNERSSVSEDDShLKVFCELLGLETSKVAQWLCNRKIVTSSETVVKPMTRPQAINARDA 400
Cdd:cd01385 243 FSVLSAVLHLGNIEYkkkAYHRDESVTVGNPEV-LDIISELLRVKEETLLEALTTKKTVTVGETLILPYKLPEAIATRDA 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 401 LAKKIYAHLFDFIVEQINQAL----HFSGKQHTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKLEQEEYM 476
Cdd:cd01385 322 MAKCLYSALFDWIVLRINHALlnkkDLEEAKGLSIGVLDIFGFEDFGNNSFEQFCINYANEHLQYYFNQHIFKLEQEEYK 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 477 KEDIPWTLIDFYDNQPVIDLIEAK-MGILELLDEECLLPHGTDENWLQKlYNNFVNKNSLFEKPRMSNSSFIIQHFADKV 555
Cdd:cd01385 402 KEGISWHNIEYTDNTGCLQLISKKpTGLLCLLDEESNFPGATNQTLLAK-FKQQHKDNKYYEKPQVMEPAFIIAHYAGKV 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 556 EYQCEGFLEKNRDTVYDMLVEILRASK-----------------------FHLCAAFFQESPVPSS----PFGAMITVKS 608
Cdd:cd01385 481 KYQIKDFREKNLDLMRPDIVAVLRSSSsafvreligidpvavfrwavlraFFRAMAAFREAGRRRAqrtaGHSLTLHDRT 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 609 AKQVIKPNTKHFRTTVGNKFRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPS 688
Cdd:cd01385 561 TKSLLHLHKKKKPPSVSAQFQTSLSKLMETLGQAEPFFIRCIKSNAEKKPLRFDDELVLRQLRYTGMLETVRIRRSGYSV 640
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|...
gi 568961004 689 RWTYLEFYSRYGILMTQQELSlsdKKEVCKVVLHRLIQDSNQYQFGRTKIFFR 741
Cdd:cd01385 641 RYTFQEFITQFQVLLPKGLIS---SKEDIKDFLEKLNLDRDNYQIGKTKVFLK 690
|
|
| MYSc_Myo10 |
cd14873 |
class X myosin, motor domain; Myosin X is an unconventional myosin motor that functions as a ... |
82-741 |
0e+00 |
|
class X myosin, motor domain; Myosin X is an unconventional myosin motor that functions as a monomer. In mammalian cells, the motor is found to localize to filopodia. Myosin X walks towards the barbed ends of filaments and is thought to walk on bundles of actin, rather than single filaments, a unique behavior. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. C-terminal to the head domain are a variable number of IQ domains, 2 PH domains, a MyTH4 domain, and a FERM domain. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276840 [Multi-domain] Cd Length: 651 Bit Score: 570.20 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 82 AVLHNLRIRFAESKlIYTYSGIILVAMNPYKQLP-IYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVS 160
Cdd:cd14873 2 SIMYNLFQRYKRNQ-IYTYIGSILASVNPYQPIAgLYEPATMEQYSRRHLGELPPHIFAIANECYRCLWKRHDNQCILIS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 161 GESGAGKTVSARYAMRYFATVSKSSSNA-------HVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQII 233
Cdd:cd14873 81 GESGAGKTESTKLILKFLSVISQQSLELslkektsCVEQAILESSPIMEAFGNAKTVYNNNSSRFGKFVQLNICQKGNIQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 234 GANMRTYLLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYTRMGGNTVIEGVNDRADMVETQKTFTLL 313
Cdd:cd14873 161 GGRIVDYLLEKNRVVRQNPGERNYHIFYALLAGLEHEEREEFYLSTPENYHYLNQSGCVEDKTISDQESFREVITAMEVM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 314 GFKKDFQMDVFKILAAILHLGNVQVTTVGNERSSvseDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVVKPMTRPQ 393
Cdd:cd14873 241 QFSKEEVREVSRLLAGILHLGNIEFITAGGAQVS---FKTALGRSAELLGLDPTQLTDALTQRSMFLRGEEILTPLNVQQ 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 394 AINARDALAKKIYAHLFDFIVEQINQALHfsGKQH-TFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKLEQ 472
Cdd:cd14873 318 AVDSRDSLAMALYARCFEWVIKKINSRIK--GKEDfKSIGILDIFGFENFEVNHFEQFNINYANEKLQEYFNKHIFSLEQ 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 473 EEYMKEDIPWTLIDFYDNQPVIDLIEAKMGILELLDEECLLPHGTDENWLQKLYNNFVNkNSLFEKPRMSNSSFIIQHFA 552
Cdd:cd14873 396 LEYSREGLVWEDIDWIDNGECLDLIEKKLGLLALINEESHFPQATDSTLLEKLHSQHAN-NHFYVKPRVAVNNFGVKHYA 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 553 DKVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFQEspvpsspfgamITVKSAKQVIKPNTKHFRTTVGNKFRSSL 632
Cdd:cd14873 475 GEVQYDVRGILEKNRDTFRDDLLNLLRESRFDFIYDLFEH-----------VSSRNNQDTLKCGSKHRRPTVSSQFKDSL 543
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 633 YLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGILMTQQELSLsD 712
Cdd:cd14873 544 HSLMATLSSSNPFFVRCIKPNMQKMPDQFDQAVVLNQLRYSGMLETVRIRKAGYAVRRPFQDFYKRYKVLMRNLALPE-D 622
|
650 660
....*....|....*....|....*....
gi 568961004 713 KKEVCKVVLHRLIQDSNQYQFGRTKIFFR 741
Cdd:cd14873 623 VRGKCTSLLQLYDASNSEWQLGKTKVFLR 651
|
|
| MYSc_Myo29 |
cd14890 |
class XXIX myosin, motor domain; Class XXIX myosins are comprised of Stramenopiles and have ... |
82-741 |
0e+00 |
|
class XXIX myosin, motor domain; Class XXIX myosins are comprised of Stramenopiles and have very long tail domains consisting of three IQ motifs, short coiled-coil regions, up to 18 CBS domains, a PB1 domain, and a carboxy-terminal transmembrane domain. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276855 [Multi-domain] Cd Length: 662 Bit Score: 569.79 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 82 AVLHNLRIRFaESKLIYTYSGIILVAMNPYKQLP-IYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMAR----NNRNQS 156
Cdd:cd14890 2 SLLHTLRLRY-ERDEIYTYVGPILISINPYKSIPdLYSEERMLLYHGTTAGELPPHVFAIADHAYTQLIQsgvlDPSNQS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 157 IIVSGESGAGKTVSARYAMRYFATVSKSSSN-----------------AHVEDKVLASNPITEAVGNAKTTRNDNSSRFG 219
Cdd:cd14890 81 IIISGESGAGKTEATKIIMQYLARITSGFAQgasgegeaaseaieqtlGSLEDRVLSSNPLLESFGNAKTLRNDNSSRFG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 220 KYTEISFDERNQIIGANMRTYLLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYTRmGGNTVIEGVND 299
Cdd:cd14890 161 KFIEIQFDHHGKIVGAEISNFLLEKTRIVTQNDGERNYHIFYQLLAGADEALRERLKLQTPVEYFYLR-GECSSIPSCDD 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 300 RADMVETQKTFTLLGFKKDFQMDVFKILAAILHLGNVQVTTVgnERSSVSEDDS---HLKVFCELLGLETSKVAQWLCNR 376
Cdd:cd14890 240 AKAFAETIRCLSTIGISEENQDAVFGLLAAVLHLGNVDFESE--NDTTVLEDATtlqSLKLAAELLGVNEDALEKALLTR 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 377 KIVTSSETVVKPMTRPQAINARDALAKKIYAHLFDFIVEQINQALHFSGKQHTFIGVLDIYGFETFDVNSFEQFCINYAN 456
Cdd:cd14890 318 QLFVGGKTIVQPQNVEQARDKRDALAKALYSSLFLWLVSELNRTISSPDDKWGFIGVLDIYGFEKFEWNTFEQLCINYAN 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 457 EKLQQQFNLHVFKLEQEEYMKEDIPWTLIDFYDNQPVIDLIEAKM----GILELLDEECLLpHGTDEN--WLQKLYNNF- 529
Cdd:cd14890 398 EKLQRHFNQHMFEVEQVEYSNEGIDWQYITFNDNQACLELIEGKVngkpGIFITLDDCWRF-KGEEANkkFVSQLHASFg 476
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 530 -----------VNKNSLFEKPRMSNS-SFIIQHFADKVEYQCEGFLEKNRDTVYDMLVEILRASkfhlcaaffqespvps 597
Cdd:cd14890 477 rksgsggtrrgSSQHPHFVHPKFDADkQFGIKHYAGDVIYDASGFNEKNNETLNAEMKELIKQS---------------- 540
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 598 spfgamitvksakqvikpnTKHFR-TTVGNKFRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVL 676
Cdd:cd14890 541 -------------------RRSIReVSVGAQFRTQLQELMAKISLTNPRYVRCIKPNETKAPGKFDGLDCLRQLKYSGMM 601
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568961004 677 ETIRISAQSYPSRWTYLEFYSRYGILMTQQElslsDKKEVCKVVLHRLIQDSNQYQFGRTKIFFR 741
Cdd:cd14890 602 EAIQIRQQGFALREEHDSFFYDFQVLLPTAE----NIEQLVAVLSKMLGLGKADWQIGSSKIFLK 662
|
|
| MYSc_Myo15 |
cd01387 |
class XV mammal-like myosin, motor domain; The class XV myosins are monomeric. In vertebrates, ... |
82-741 |
0e+00 |
|
class XV mammal-like myosin, motor domain; The class XV myosins are monomeric. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. C-terminal to the head domain are 2 MyTH4 domain, a FERM domain, and a SH3 domain. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276838 [Multi-domain] Cd Length: 657 Bit Score: 568.62 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 82 AVLHNLRIRFaESKLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVSG 161
Cdd:cd01387 2 TVLWNLKTRY-ERNLIYTYIGSILVSVNPYKMFDIYGLEQVQQYSGRALGELPPHLFAIANLAFAKMLDAKQNQCVVISG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 162 ESGAGKTVSARYAMRYFATVSKSSSNAhVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFdERNQIIGANMRTYL 241
Cdd:cd01387 81 ESGSGKTEATKLIMQYLAAVNQRRNNL-VTEQILEATPLLEAFGNAKTVRNDNSSRFGKYLEVFF-EGGVIVGAITSQYL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 242 LEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYTRMGGNTVIEGVNDRADMVETQKTFTLLGFKKDFQM 321
Cdd:cd01387 159 LEKSRIVTQAKNERNYHVFYELLAGLPAQLRQKYGLQEAEKYFYLNQGGNCEIAGKSDADDFRRLLAAMQVLGFSSEEQD 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 322 DVFKILAAILHLGNV----QVTTVGNERSSVSEDdSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVVKPMTRPQAINA 397
Cdd:cd01387 239 SIFRILASVLHLGNVyfhkRQLRHGQEGVSVGSD-AEIQWVAHLLQISPEGLQKALTFKVTETRRERIFTPLTIDQALDA 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 398 RDALAKKIYAHLFDFIVEQINQALHFSGKQHTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKLEQEEYMK 477
Cdd:cd01387 318 RDAIAKALYALLFSWLVTRVNAIVYSGTQDTLSIAILDIFGFEDLSENSFEQLCINYANENLQYYFNKHVFKLEQEEYIR 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 478 EDIPWTLIDFYDNQPVIDLIEAK-MGILELLDEECLLPHGTDENWLQKL-YNNFVNKnsLFEKPRMSNSSFIIQHFADKV 555
Cdd:cd01387 398 EQIDWTEIAFADNQPVINLISKKpVGILHILDDECNFPQATDHSFLEKChYHHALNE--LYSKPRMPLPEFTIKHYAGQV 475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 556 EYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFQ------ESPVPSSPFGAMITvksakqvIKPNTKhfrtTVGNKFR 629
Cdd:cd01387 476 WYQVHGFLDKNRDQLRQDVLELLVSSRTRVVAHLFSshraqtDKAPPRLGKGRFVT-------MKPRTP----TVAARFQ 544
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 630 SSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGILMTQQeLS 709
Cdd:cd01387 545 DSLLQLLEKMERCNPWFVRCLKPNHKKEPMLFDMDVVMAQLRYSGMLETIRIRKEGYPVRLPFQVFIDRYRCLVALK-LP 623
|
650 660 670
....*....|....*....|....*....|....
gi 568961004 710 LSDKKEVCKVVLHRL--IQDSNQYQFGRTKIFFR 741
Cdd:cd01387 624 RPAPGDMCVSLLSRLctVTPKDMYRLGATKVFLR 657
|
|
| MYSc_Myo3 |
cd01379 |
class III myosin, motor domain; Myosin III has been shown to play a role in the vision process ... |
81-741 |
0e+00 |
|
class III myosin, motor domain; Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. They are characterized by an N-terminal protein kinase domain and several IQ domains. Some members also contain WW, SH2, PH, and Y-phosphatase domains. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276830 [Multi-domain] Cd Length: 633 Bit Score: 561.13 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 81 PAVLHNLRIRFAESkLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVS 160
Cdd:cd01379 1 DTIVSQLQKRYSRD-QIYTYIGDILIAVNPFQNLGIYTEEHSRLYRGAKRSDNPPHIFAVADAAYQAMIHQKKNQCIVIS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 161 GESGAGKTVSARYAMRYFATVSKSSsNAHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQIIGANMRTY 240
Cdd:cd01379 80 GESGAGKTESANLLVQQLTVLGKAN-NRTLEEKILQVNPLMEAFGNARTVINDNSSRFGKYLEMKFTSTGAVTGARISEY 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 241 LLEKSRVVFQSENERNYHIFYQLCAS-AQQSEFKHLKLGSAEEFNYTRMGGNTVIEGVNDRADMV---ETQKTFTLLGFK 316
Cdd:cd01379 159 LLEKSRVVHQAIGERNFHIFYYIYAGlAEDKKLAKYKLPENKPPRYLQNDGLTVQDIVNNSGNREkfeEIEQCFKVIGFT 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 317 KDFQMDVFKILAAILHLGNVQVTTVGNE----RSSVSEDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVVKPMTRP 392
Cdd:cd01379 239 KEEVDSVYSILAAILHIGDIEFTEVESNhqtdKSSRISNPEALNNVAKLLGIEADELQEALTSHSVVTRGETIIRNNTVE 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 393 QAINARDALAKKIYAHLFDFIVEQINQAL----HFSGKQHTfIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVF 468
Cdd:cd01379 319 EATDARDAMAKALYGRLFSWIVNRINSLLkpdrSASDEPLS-IGILDIFGFENFQKNSFEQLCINIANEQIQYYFNQHIF 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 469 KLEQEEYMKEDIPWTLIDFYDNQPVIDLIEAK-MGILELLDEECLLPHGTDENWLQKLYNNFvnKNSLFEKPRMSNSSFI 547
Cdd:cd01379 398 AWEQQEYLNEGIDVDLIEYEDNRPLLDMFLQKpMGLLALLDEESRFPKATDQTLVEKFHNNI--KSKYYWRPKSNALSFG 475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 548 IQHFADKVEYQCEGFLEKNRDTVYDMLVEILRASKFHLcaaffqespvpsspfgamitvksakqvikpntkhFRTTVGNK 627
Cdd:cd01379 476 IHHYAGKVLYDASGFLEKNRDTLPPDVVQLLRSSENPL----------------------------------VRQTVATY 521
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 628 FRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGILMTQQE 707
Cdd:cd01379 522 FRYSLMDLLSKMVVGQPHFVRCIKPNDSRQAGKFDREKVLKQLRYTGVLETTRIRRQGFSHRILFADFLKRYYFLAFKWN 601
|
650 660 670
....*....|....*....|....*....|....
gi 568961004 708 LSLSDKKEVCKVVLHRLIQDSnqYQFGRTKIFFR 741
Cdd:cd01379 602 EEVVANRENCRLILERLKLDN--WALGKTKVFLK 633
|
|
| MYSc_Myo43 |
cd14904 |
class XLIII myosin, motor domain; The class XLIII myosins are comprised of Stramenopiles. Not ... |
81-741 |
0e+00 |
|
class XLIII myosin, motor domain; The class XLIII myosins are comprised of Stramenopiles. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276869 Cd Length: 653 Bit Score: 559.17 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 81 PAVLHNLRIRFAESKlIYTYSGIILVAMNPYKQLP-IYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIV 159
Cdd:cd14904 1 PSILFNLKKRFAASK-PYTYTNDIVIALNPYKWIDnLYGDHLHEQYLKKPRDKLQPHVYATSTAAYKHMLTNEMNQSILV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 160 SGESGAGKTVSARYAMRYFATVSKSSSNAHVeDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQIIGANMRT 239
Cdd:cd14904 80 SGESGAGKTETTKIVMNHLASVAGGRKDKTI-AKVIDVNPLLESFGNAKTTRNDNSSRFGKFTQLQFDGRGKLIGAKCET 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 240 YLLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYtrMGGN---TVIEGVNDRADMVETQKTFTLLGFK 316
Cdd:cd14904 159 YLLEKSRVVSIAEGERNYHIFYQLLAGLSSEERKEFGLDPNCQYQY--LGDSlaqMQIPGLDDAKLFASTQKSLSLIGLD 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 317 KDFQMDVFKILAAILHLGNVQVTTVGnERSSVSEDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVVKPMTRPQAIN 396
Cdd:cd14904 237 NDAQRTLFKILSGVLHLGEVMFDKSD-ENGSRISNGSQLSQVAKMLGLPTTRIEEALCNRSVVTRNESVTVPLAPVEAEE 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 397 ARDALAKKIYAHLFDFIVEQINQALHFSGKQ-HTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKLEQEEY 475
Cdd:cd14904 316 NRDALAKAIYSKLFDWMVVKINAAISTDDDRiKGQIGVLDIFGFEDFAHNGFEQFCINYANEKLQQKFTTDVFKTVEEEY 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 476 MKEDIPWTLIDFYDNQPVIDLIEAKMGILELLDEECLLPHGTDENWLQKLYNNFVNK--NSLFEKPRMSNSSFIIQHFAD 553
Cdd:cd14904 396 IREGLQWDHIEYQDNQGIVEVIDGKMGIIALMNDHLRQPRGTEEALVNKIRTNHQTKkdNESIDFPKVKRTQFIINHYAG 475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 554 KVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFQESPVPSSPFGAmitvKSAKQVIKPNtkhfrtTVGNKFRSSLY 633
Cdd:cd14904 476 PVTYETVGFMEKHRDTLQNDLLDLVLLSSLDLLTELFGSSEAPSETKEG----KSGKGTKAPK------SLGSQFKTSLS 545
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 634 LLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGIlMTQQELSLSDK 713
Cdd:cd14904 546 QLMDNIKTTNTHYVRCIKPNANKSPTEFDKRMVVEQLRSAGVIEAIRITRSGYPSRLTPKELATRYAI-MFPPSMHSKDV 624
|
650 660
....*....|....*....|....*....
gi 568961004 714 KEVCKVVLHRLIQDSN-QYQFGRTKIFFR 741
Cdd:cd14904 625 RRTCSVFMTAIGRKSPlEYQIGKSLIYFK 653
|
|
| Myo5_CBD |
cd15470 |
Cargo binding domain of myosin 5; Class V myosins are well studied unconventional myosins, ... |
1376-1742 |
0e+00 |
|
Cargo binding domain of myosin 5; Class V myosins are well studied unconventional myosins, represented by three paralogs (Myo5a,b,c) in vertebrates. Their C-terminal cargo binding domains (CBDs) are important for the binding of a diverse set of cargos, including membrane vesicles, organelles, proteins and mRNA. The MyoV-CBDs directly interact with several adaptor proteins, in case of Myo5a, melanophilin (MLPH), Rab interacting lysosomal protein-like 2 (RILPL2), and granuphilin, and in case of Myo5b, Rab11-family interacting protein 2.
Pssm-ID: 271254 [Multi-domain] Cd Length: 332 Bit Score: 550.28 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1376 EDEGKLIQNLILDLKPRGVVvNMIPGLPAHILFMCVRYADSLNDANMLKSLMNSAINGIKHVVKEHFEDLEMLSFWLSNT 1455
Cdd:cd15470 1 EDESRLIKNLITDLKPRGAV-GLLPGLPAYILFMCIRHADYVNDEAKVRSLLTATINAIKKVLKKHSEDFEMLSFWLVNT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1456 CHFLNCLKQYSGEEEFMKYNSPQQNKNCLNNFDLTEYRQILSDVAIRIYHQFIIVMENNLQPiivpgmleyeslqgisgl 1535
Cdd:cd15470 80 CRLLNCLKQYSGEEEFMKHNTPKQNEHCLKNFDLSEYRQVLSDLAIQIYQQLIKRAEEILQP------------------ 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1536 kptgfrkrsssiddtdayTMTSILQQLSYFYSTMCQNGLDPEIVRQAVKQLFYLVGAVTLNSLLLRKDMCSCRKGMQIRC 1615
Cdd:cd15470 142 ------------------TLDSLLQQLNSFHTTLTQHGLDPELIKQVFRQLFYLICASTLNNLLLRKDLCSWSKGMQIRY 203
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1616 NISFLEEWLKDKNVQSSLAKETLEPLSQAAWLLQVKKTTDSDAKEIAQCCTSLSAVQIIKILNSYTPIDDFEKRVNPSFV 1695
Cdd:cd15470 204 NVSQLEEWLRDKGLQDSGARETLEPLIQAAQLLQVKKTTEEDAQSICEMCTKLTTAQIVKILNLYTPVDDFEERVTPSFI 283
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 568961004 1696 RKVQALLNNRGDSA--QLMLDTKYLFQVTFPFTASPHALEMTQIPSSFK 1742
Cdd:cd15470 284 RKVQARLNERADSNqlQLLMDTKYIFPVTFPFNPSPVALEELQIPPSLH 332
|
|
| MYSc_Myo40 |
cd14901 |
class XL myosin, motor domain; The class XL myosins are comprised of Stramenopiles. Not much ... |
81-739 |
1.72e-177 |
|
class XL myosin, motor domain; The class XL myosins are comprised of Stramenopiles. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276866 [Multi-domain] Cd Length: 655 Bit Score: 550.55 E-value: 1.72e-177
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 81 PAVLHNLRIRFaESKLIYTYSGIILVAMNPYKQLPIYGDAIIHAY---SGQNMGD---MDPHIFAVAEEAYKQMARNNR- 153
Cdd:cd14901 1 PSILHVLRRRF-AHGLIYTSTGAILVAINPFRRLPLYDDETKEAYyehGERRAAGerkLPPHVYAVADKAFRAMLFASRg 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 154 ---NQSIIVSGESGAGKTVSARYAMRYFATVS-KSSSNAH------VEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTE 223
Cdd:cd14901 80 qkcDQSILVSGESGAGKTETTKIIMNYLASVSsATTHGQNaterenVRDRVLESNPILEAFGNARTNRNNNSSRFGKFIR 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 224 ISFDERNQIIGANMRTYLLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYTRMGGNTV-IEGVNDRAD 302
Cdd:cd14901 160 LGFASSGSLLGASISTYLLERVRLVSQAKGERNYHIFYELLRGASSDELHALGLTHVEEYKYLNSSQCYDrRDGVDDSVQ 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 303 MVETQKTFTLLGFKKDFQMDVFKILAAILHLGNVQ-VTTVGNERSSVSEDDSHLKVFCELLGLETSKVAQWLCNRKIVTS 381
Cdd:cd14901 240 YAKTRHAMTTIGMSPDEQISVLQLVAAVLHLGNLCfVKKDGEGGTFSMSSLANVRAACDLLGLDMDVLEKTLCTREIRAG 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 382 SETVVKPMTRPQAINARDALAKKIYAHLFDFIVEQINQALHF--SGKQHTFIGVLDIYGFETFDVNSFEQFCINYANEKL 459
Cdd:cd14901 320 GEYITMPLSVEQALLTRDVVAKTLYAQLFDWLVDRINESIAYseSTGASRFIGIVDIFGFEIFATNSLEQLCINFANEKL 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 460 QQQFNLHVFKLEQEEYMKEDIPWTLIDFYDNQPVIDLIEAK-MGILELLDEECLLPHGTDENWLQKLYNNFVNKNSL-FE 537
Cdd:cd14901 400 QQLFGKFVFEMEQDEYVAEAIPWTFVEYPNNDACVAMFEARpTGLFSLLDEQCLLPRGNDEKLANKYYDLLAKHASFsVS 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 538 KPRMSNSSFIIQHFADKVEYQCEGFLEKNRDTVYDMLVEILRASKFHLcaaffqespVPSspfgamitvksakqvikpnt 617
Cdd:cd14901 480 KLQQGKRQFVIHHYAGAVCYATDGFCDKNKDHVHSEALALLRTSSNAF---------LSS-------------------- 530
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 618 khfrtTVGNKFRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYS 697
Cdd:cd14901 531 -----TVVAKFKVQLSSLLEVLNATEPHFIRCIKPNDVLSPSEFDAKRVLEQLRCSGVLEAVKISRSGYPVRFPHDAFVH 605
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|.
gi 568961004 698 RYGILMTQQElslSDKKEVCKVVLHR---------LIQDSNQYQFGRTKIF 739
Cdd:cd14901 606 TYSCLAPDGA---SDTWKVNELAERLmsqlqhselNIEHLPPFQVGKTKVF 653
|
|
| MYSc_Myo31 |
cd14892 |
class XXXI myosin, motor domain; Class XXXI myosins have a very long neck region consisting of ... |
87-741 |
1.04e-174 |
|
class XXXI myosin, motor domain; Class XXXI myosins have a very long neck region consisting of 17 IQ motifs and 2 tandem ANK repeats that are separated by a PH domain. The myosin classes XXX to XXXIV contain members from Phytophthora species and Hyaloperonospora parasitica. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276857 [Multi-domain] Cd Length: 656 Bit Score: 543.20 E-value: 1.04e-174
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 87 LRIRFaESKLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMD---PHIFAVAEEAYKQM----ARNNRNQSIIV 159
Cdd:cd14892 7 LRRRY-ERDAIYTFTADILISINPYKSIPLLYDVPGFDSQRKEEATASsppPHVFSIAERAYRAMkgvgKGQGTPQSIVV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 160 SGESGAGKTVSARYAMRYFATVSKSSS---------NAH--VEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDE 228
Cdd:cd14892 86 SGESGAGKTEASKYIMKYLATASKLAKgastskgaaNAHesIEECVLLSNLILEAFGNAKTIRNDNSSRFGKYIQIHYNS 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 229 RNQIIGANMRTYLLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYTRMGGNTVIEGVNDRADMVETQK 308
Cdd:cd14892 166 DGRIAGASTDHFLLEKSRLVGPDANERNYHIFYQLLAGLDANENAALELTPAESFLFLNQGNCVEVDGVDDATEFKQLRD 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 309 TFTLLGFKKDFQMDVFKILAAILHLGNVQVTTVGNERSSVSEDDSHLKV--FCELLGLETSKVAQWLCNRKIVTSSETVV 386
Cdd:cd14892 246 AMEQLGFDAEFQRPIFEVLAAVLHLGNVRFEENADDEDVFAQSADGVNVakAAGLLGVDAAELMFKLVTQTTSTARGSVL 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 387 K-PMTRPQAINARDALAKKIYAHLFDFIVEQINQA----------LHFSGKQHTFIGVLDIYGFETFDVNSFEQFCINYA 455
Cdd:cd14892 326 EiKLTAREAKNALDALCKYLYGELFDWLISRINAChkqqtsgvtgGAASPTFSPFIGILDIFGFEIMPTNSFEQLCINFT 405
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 456 NEKLQQQFNLHVFKLEQEEYMKEDIPWTLIDFYDNQPVIDLIEAK-MGILELLDEECLLPH-GTDENWLQKLYNNFVNKN 533
Cdd:cd14892 406 NEMLQQQFNKHVFVLEQEVYASEGIDVSAIEFQDNQDCLDLIQKKpLGLLPLLEEQMLLKRkTTDKQLLTIYHQTHLDKH 485
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 534 SLFEKPRMSNSSFIIQHFADKVEYQCEGFLEKNRDTVYDMLVEILRASKfhlcaaffqespvpsspfgamitvksakqvi 613
Cdd:cd14892 486 PHYAKPRFECDEFVLRHYAGDVTYDVHGFLAKNNDNLHDDLRDLLRSSS------------------------------- 534
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 614 kpntkhfrttvgnKFRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYL 693
Cdd:cd14892 535 -------------KFRTQLAELMEVLWSTTPSYIKCIKPNNLKFPGGFSCELVRDQLIYSGVLEVVRIRREGFPIRRQFE 601
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*..
gi 568961004 694 EFYSRYGIL--------MTQQELSLSD-KKEVCKVVLHRLiqDSNQYQFGRTKIFFR 741
Cdd:cd14892 602 EFYEKFWPLarnkagvaASPDACDATTaRKKCEEIVARAL--ERENFQLGRTKVFLR 656
|
|
| MYSc_Myo27 |
cd14888 |
class XXVII myosin, motor domain; Not much is known about this myosin class. The catalytic ... |
81-741 |
8.78e-173 |
|
class XXVII myosin, motor domain; Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276853 [Multi-domain] Cd Length: 667 Bit Score: 538.12 E-value: 8.78e-173
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 81 PAVLHNLRIRFAESKlIYTYSGIILVAMNPYKQLP-IYGDAIIHAYSgQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIV 159
Cdd:cd14888 1 ASILHSLNLRFDIDE-IYTFTGPILIAVNPFKTIPgLYSDEMLLKFI-QPSISKSPHVFSTASSAYQGMCNNKKSQTILI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 160 SGESGAGKTVSARYAMRYFATVSKSS--SNAHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERN------- 230
Cdd:cd14888 79 SGESGAGKTESTKYVMKFLACAGSEDikKRSLVEAQVLESNPLLEAFGNARTLRNDNSSRFGKFIELQFSKLKskrmsgd 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 231 --QIIGANMRTYLLEKSRVVFQSENERNYHIFYQLCASAQQS-------EFKHLKLG----------------SAEEFNY 285
Cdd:cd14888 159 rgRLCGAKIQTYLLEKVRVCDQQEGERNYHIFYQLCAAAREAkntglsyEENDEKLAkgadakpisidmssfePHLKFRY 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 286 TRMGGNTVIEGVNDRADMVETQKTFTLLGFKKDFQMDVFKILAAILHLGNVQ-VTTVGNERSSV--SEDDSHLKVFCELL 362
Cdd:cd14888 239 LTKSSCHELPDVDDLEEFESTLYAMQTVGISPEEQNQIFSIVAAILYLGNILfENNEACSEGAVvsASCTDDLEKVASLL 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 363 GLETSKVAQWLCNRKIVTSSETVVKPMTRPQAINARDALAKKIYAHLFDFIVEQINQALHFSGKQHT-FIGVLDIYGFET 441
Cdd:cd14888 319 GVDAEDLLNALCYRTIKTAHEFYTKPLRVDEAEDVRDALARALYSCLFDKVVERTNESIGYSKDNSLlFCGVLDIFGFEC 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 442 FDVNSFEQFCINYANEKLQQQFNLHVFKLEQEEYMKEDIPWTLIDFYDNQPVIDLIEAK-MGILELLDEECLLPHGTDEN 520
Cdd:cd14888 399 FQLNSFEQLCINFTNERLQQFFNNFVFKCEEKLYIEEGISWNPLDFPDNQDCVDLLQEKpLGIFCMLDEECFVPGGKDQG 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 521 WLQKLYNNFVNkNSLFEKPRMSNSSFIIQHFADKVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFqespvpSSPF 600
Cdd:cd14888 479 LCNKLCQKHKG-HKRFDVVKTDPNSFVIVHFAGPVKYCSDGFLEKNKDQLSVDAQEVIKNSKNPFISNLF------SAYL 551
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 601 GAMITVKSakqvikpnTKHFRTTVGNKFRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIR 680
Cdd:cd14888 552 RRGTDGNT--------KKKKFVTVSSEFRNQLDVLMETIDKTEPHFIRCIKPNSQNVPDLFDRISVNEQLKYGGVLQAVQ 623
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568961004 681 ISAQSYPSRWTYLEFYSRYGILMTQQElslsdKKEVckvvlhrliqdsNQYQFGRTKIFFR 741
Cdd:cd14888 624 VSRAGYPVRLSHAEFYNDYRILLNGEG-----KKQL------------SIWAVGKTLCFFK 667
|
|
| MYSc_Myh10 |
cd14920 |
class II myosin heavy chain 10, motor domain; Myosin motor domain of non-muscle myosin heavy ... |
82-741 |
4.89e-164 |
|
class II myosin heavy chain 10, motor domain; Myosin motor domain of non-muscle myosin heavy chain 10 (also called NMMHCB). Mutations in this gene have been associated with May-Hegglin anomaly and developmental defects in brain and heart. Multiple transcript variants encoding different isoforms have been found for this gene. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276952 [Multi-domain] Cd Length: 673 Bit Score: 514.94 E-value: 4.89e-164
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 82 AVLHNLRIRFAeSKLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVSG 161
Cdd:cd14920 2 SVLHNLKDRYY-SGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 162 ESGAGKTVSARYAMRYFATVSKSSSN-------AHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQIIG 234
Cdd:cd14920 81 ESGAGKTENTKKVIQYLAHVASSHKGrkdhnipGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRINFDVTGYIVG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 235 ANMRTYLLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYTRmGGNTVIEGVNDRADMVETQKTFTLLG 314
Cdd:cd14920 161 ANIETYLLEKSRAVRQAKDERTFHIFYQLLSGAGEHLKSDLLLEGFNNYRFLS-NGYIPIPGQQDKDNFQETMEAMHIMG 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 315 FKKDFQMDVFKILAAILHLGNVQVTTVGNERSSVSEDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVVKPMTRPQA 394
Cdd:cd14920 240 FSHEEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGRDYVQKAQTKEQA 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 395 INARDALAKKIYAHLFDFIVEQINQALHFSGKQ-HTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKLEQE 473
Cdd:cd14920 320 DFAVEALAKATYERLFRWLVHRINKALDRTKRQgASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQE 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 474 EYMKEDIPWTLIDF-YDNQPVIDLIEAKM---GILELLDEECLLPHGTDENWLQKLYNNfVNKNSLFEKPRM--SNSSFI 547
Cdd:cd14920 400 EYQREGIEWNFIDFgLDLQPCIDLIERPAnppGVLALLDEECWFPKATDKTFVEKLVQE-QGSHSKFQKPRQlkDKADFC 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 548 IQHFADKVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFQE--SPVPSSPFGAMiTVKSAKQVIKPNTKHFRtTVG 625
Cdd:cd14920 479 IIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDRFVAELWKDvdRIVGLDQVTGM-TETAFGSAYKTKKGMFR-TVG 556
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 626 NKFRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGILMTQ 705
Cdd:cd14920 557 QLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPN 636
|
650 660 670
....*....|....*....|....*....|....*..
gi 568961004 706 Q-ELSLSDKKEVCKVVLHRLIQDSNQYQFGRTKIFFR 741
Cdd:cd14920 637 AiPKGFMDGKQACERMIRALELDPNLYRIGQSKIFFR 673
|
|
| MYSc_Myh7b |
cd14927 |
class II myosin heavy chain 7b, motor domain; Myosin motor domain of cardiac muscle, beta ... |
82-741 |
6.86e-162 |
|
class II myosin heavy chain 7b, motor domain; Myosin motor domain of cardiac muscle, beta myosin heavy chain 7b (also called KIAA1512, dJ756N5.1, MYH14, MHC14). MYH7B is a slow-twitch myosin. Mutations in this gene result in one form of autosomal dominant hearing impairment. Multiple transcript variants encoding different isoforms have been found for this gene. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276953 [Multi-domain] Cd Length: 676 Bit Score: 509.50 E-value: 6.86e-162
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 82 AVLHNLRIRFAeSKLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVSG 161
Cdd:cd14927 2 SVLHNLRRRYS-RWMIYTYSGLFCVTVNPYKWLPVYTAPVVAAYKGKRRSEAPPHIYAIADNAYNDMLRNRENQSMLITG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 162 ESGAGKTVSARYAMRYFATVS-------------KSSSNAHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDE 228
Cdd:cd14927 81 ESGAGKTVNTKRVIQYFAIVAalgdgpgkkaqflATKTGGTLEDQIIEANPAMEAFGNAKTLRNDNSSRFGKFIRIHFGP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 229 RNQIIGANMRTYLLEKSRVVFQSENERNYHIFYQLcASAQQSEFKHLKLGSAEEFNYTRMG-GNTVIEGVNDRADMVETQ 307
Cdd:cd14927 161 TGKLASADIDIYLLEKSRVIFQQPGERSYHIYYQI-LSGKKPELQDMLLVSMNPYDYHFCSqGVTTVDNMDDGEELMATD 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 308 KTFTLLGFKKDFQMDVFKILAAILHLGNVQVTTVGNERSSVSEDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVVK 387
Cdd:cd14927 240 HAMDILGFSPDEKYGCYKIVGAIMHFGNMKFKQKQREEQAEADGTESADKAAYLMGVSSADLLKGLLHPRVKVGNEYVTK 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 388 PMTRPQAINARDALAKKIYAHLFDFIVEQINQALHFSGKQHTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHV 467
Cdd:cd14927 320 GQSVEQVVYAVGALAKATYDRMFKWLVSRINQTLDTKLPRQFFIGVLDIAGFEIFEFNSFEQLCINFTNEKLQQFFNHHM 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 468 FKLEQEEYMKEDIPWTLIDF-YDNQPVIDLIEAKMGILELLDEECLLPHGTDENWLQKLYNNFVNKNSLFEKPRMSN--- 543
Cdd:cd14927 400 FILEQEEYKREGIEWVFIDFgLDLQACIDLIEKPLGILSILEEECMFPKASDASFKAKLYDNHLGKSPNFQKPRPDKkrk 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 544 --SSFIIQHFADKVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFqESPVPSSpfgamiTVKSAKQVIKPNTKHFR 621
Cdd:cd14927 480 yeAHFEVVHYAGVVPYNIVGWLDKNKDPLNETVVAIFQKSQNKLLATLY-ENYVGSD------STEDPKSGVKEKRKKAA 552
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 622 T--TVGNKFRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRY 699
Cdd:cd14927 553 SfqTVSQLHKENLNKLMTNLRATQPHFVRCIIPNETKTPGVMDPFLVLHQLRCNGVLEGIRICRKGFPNRILYADFKQRY 632
|
650 660 670 680
....*....|....*....|....*....|....*....|....
gi 568961004 700 GILMTQQ--ELSLSDKKEVCKVVLHRLIQDSNQYQFGRTKIFFR 741
Cdd:cd14927 633 RILNPSAipDDKFVDSRKATEKLLGSLDIDHTQYQFGHTKVFFK 676
|
|
| MYSc_Myh3 |
cd14913 |
class II myosin heavy chain 3, motor domain; Myosin motor domain of fetal skeletal muscle ... |
81-741 |
7.21e-162 |
|
class II myosin heavy chain 3, motor domain; Myosin motor domain of fetal skeletal muscle myosin heavy chain 3 (MYHC-EMB, MYHSE1, HEMHC, SMHCE) in tetrapods including mammals, lizards, and frogs. This gene is a member of the MYH family and encodes a protein with an IQ domain and a myosin head-like domain. Mutations in this gene have been associated with two congenital contracture (arthrogryposis) syndromes, Freeman-Sheldon syndrome and Sheldon-Hall syndrome. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276878 [Multi-domain] Cd Length: 668 Bit Score: 509.21 E-value: 7.21e-162
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 81 PAVLHNLRIRFAeSKLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVS 160
Cdd:cd14913 1 PAVLYNLKDRYT-SWMIYTYSGLFCVTVNPYKWLPVYNPEVVEGYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILIT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 161 GESGAGKTVSARYAMRYFATVS---------KSSSNAHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQ 231
Cdd:cd14913 80 GESGAGKTVNTKRVIQYFATIAatgdlakkkDSKMKGTLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIHFGTTGK 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 232 IIGANMRTYLLEKSRVVFQSENERNYHIFYQLCaSAQQSEFKHLKLGSAEEFNYTRMG-GNTVIEGVNDRADMVETQKTF 310
Cdd:cd14913 160 LASADIETYLLEKSRVTFQLKAERSYHIFYQIL-SNKKPELIELLLITTNPYDYPFISqGEILVASIDDAEELLATDSAI 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 311 TLLGFKKDFQMDVFKILAAILHLGNVQVTTVGNERSSVSEDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVVKPMT 390
Cdd:cd14913 239 DILGFTPEEKSGLYKLTGAVMHYGNMKFKQKQREEQAEPDGTEVADKTAYLMGLNSSDLLKALCFPRVKVGNEYVTKGQT 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 391 RPQAINARDALAKKIYAHLFDFIVEQINQALHFSGKQHTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKL 470
Cdd:cd14913 319 VDQVHHAVNALSKSVYEKLFLWMVTRINQQLDTKLPRQHFIGVLDIAGFEIFEYNSLEQLCINFTNEKLQQFFNHHMFVL 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 471 EQEEYMKEDIPWTLIDF-YDNQPVIDLIEAKMGILELLDEECLLPHGTDENWLQKLYNNFVNKNSLFEKPRM----SNSS 545
Cdd:cd14913 399 EQEEYKKEGIEWTFIDFgMDLAACIELIEKPMGIFSILEEECMFPKATDTSFKNKLYDQHLGKSNNFQKPKVvkgrAEAH 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 546 FIIQHFADKVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFqespvpsSPFGAMITVKSAKQVIKPNTKHFRtTVG 625
Cdd:cd14913 479 FSLIHYAGTVDYSVSGWLEKNKDPLNETVVGLYQKSSNRLLAHLY-------ATFATADADSGKKKVAKKKGSSFQ-TVS 550
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 626 NKFRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGILMTQ 705
Cdd:cd14913 551 ALFRENLNKLMSNLRTTHPHFVRCIIPNETKTPGAMEHSLVLHQLRCNGVLEGIRICRKGFPNRILYGDFKQRYRVLNAS 630
|
650 660 670
....*....|....*....|....*....|....*...
gi 568961004 706 Q--ELSLSDKKEVCKVVLHRLIQDSNQYQFGRTKIFFR 741
Cdd:cd14913 631 AipEGQFIDSKKACEKLLASIDIDHTQYKFGHTKVFFK 668
|
|
| MYSc_Myh1_insects_crustaceans |
cd14909 |
class II myosin heavy chain 1, motor domain; Myosin motor domain of type IIx skeletal muscle ... |
81-741 |
1.56e-161 |
|
class II myosin heavy chain 1, motor domain; Myosin motor domain of type IIx skeletal muscle myosin heavy chain 1 (also called MYHSA1, MYHa, MyHC-2X/D, MGC133384) in insects and crustaceans. Myh1 is a type I skeletal muscle myosin that in Humans is encoded by the MYH1 gene. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276874 Cd Length: 666 Bit Score: 508.22 E-value: 1.56e-161
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 81 PAVLHNLRIRFaESKLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVS 160
Cdd:cd14909 1 ASVLHNLRQRY-YAKLIYTYSGLFCVAINPYKRYPVYTNRCAKMYRGKRRNEVPPHIFAISDGAYVDMLTNHVNQSMLIT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 161 GESGAGKTVSARYAMRYFATVSKSS-------SNAHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQII 233
Cdd:cd14909 80 GESGAGKTENTKKVIAYFATVGASKktdeaakSKGSLEDQVVQTNPVLEAFGNAKTVRNDNSSRFGKFIRIHFGPTGKLA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 234 GANMRTYLLEKSRVVFQSENERNYHIFYQLcASAQQSEFKHLKLGSAEEFNYTRMG-GNTVIEGVNDRADMVETQKTFTL 312
Cdd:cd14909 160 GADIETYLLEKARVISQQSLERSYHIFYQI-MSGSVPGVKEMCLLSDNIYDYYIVSqGKVTVPNVDDGEEFSLTDQAFDI 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 313 LGFKKDFQMDVFKILAAILHLGNVQVTTVGNERSSVSEDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVVKPMTRP 392
Cdd:cd14909 239 LGFTKQEKEDVYRITAAVMHMGGMKFKQRGREEQAEQDGEEEGGRVSKLFGCDTAELYKNLLKPRIKVGNEFVTQGRNVQ 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 393 QAINARDALAKKIYAHLFDFIVEQINQALHFSGKQHTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKLEQ 472
Cdd:cd14909 319 QVTNSIGALCKGVFDRLFKWLVKKCNETLDTQQKRQHFIGVLDIAGFEIFEYNGFEQLCINFTNEKLQQFFNHHMFVLEQ 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 473 EEYMKEDIPWTLIDF-YDNQPVIDLIEAKMGILELLDEECLLPHGTDENWLQKLYNNFVNKNSLFEKPRMSN-----SSF 546
Cdd:cd14909 399 EEYKREGIDWAFIDFgMDLLACIDLIEKPMGILSILEEESMFPKATDQTFSEKLTNTHLGKSAPFQKPKPPKpgqqaAHF 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 547 IIQHFADKVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFQESPVPSSPFGAmitvksAKQVIKPNTKHFrTTVGN 626
Cdd:cd14909 479 AIAHYAGCVSYNITGWLEKNKDPLNDTVVDQFKKSQNKLLIEIFADHAGQSGGGEQ------AKGGRGKKGGGF-ATVSS 551
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 627 KFRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGILMTQQ 706
Cdd:cd14909 552 AYKEQLNSLMTTLRSTQPHFVRCIIPNEMKQPGVVDAHLVMHQLTCNGVLEGIRICRKGFPNRMMYPDFKMRYKILNPAG 631
|
650 660 670
....*....|....*....|....*....|....*
gi 568961004 707 ELSLSDKKEVCKVVLHRLIQDSNQYQFGRTKIFFR 741
Cdd:cd14909 632 IQGEEDPKKAAEIILESIALDPDQYRLGHTKVFFR 666
|
|
| MYSc_Myh15_mammals |
cd14929 |
class II myosin heavy chain 15, motor domain; Myosin motor domain of sarcomeric myosin heavy ... |
81-741 |
2.30e-161 |
|
class II myosin heavy chain 15, motor domain; Myosin motor domain of sarcomeric myosin heavy chain 15 in mammals (also called KIAA1000) . MYH15 is a slow-twitch myosin. Myh15 is a ventricular myosin heavy chain. Myh15 is absent in embryonic and fetal muscles and is found in orbital layer of extraocular muscles at birth. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276892 [Multi-domain] Cd Length: 662 Bit Score: 507.59 E-value: 2.30e-161
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 81 PAVLHNLRIRFaESKLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVS 160
Cdd:cd14929 1 ASVLHTLRRRY-DHWMIYTYSGLFCVTINPYKWLPVYQKEVMAAYKGKRRSEAPPHIFAVANNAFQDMLHNRENQSILFT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 161 GESGAGKTVSARYAMRYFATVSKSSSN----AHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQIIGAN 236
Cdd:cd14929 80 GESGAGKTVNTKHIIQYFATIAAMIESkkklGALEDQIMQANPVLEAFGNAKTLRNDNSSRFGKFIRMHFGARGMLSSAD 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 237 MRTYLLEKSRVVFQSENERNYHIFYQLCASAQqsEFKHLKLGSA--EEFNYTRMGGNTViEGVNDRADMVETQKTFTLLG 314
Cdd:cd14929 160 IDIYLLEKSRVIFQQPGERNYHIFYQILSGKK--ELRDLLLVSAnpSDFHFCSCGAVAV-ESLDDAEELLATEQAMDILG 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 315 FKKDFQMDVFKILAAILHLGNVQVTTVGNERSSVSEDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVVKPMTRPQA 394
Cdd:cd14929 237 FLPDEKYGCYKLTGAIMHFGNMKFKQKPREEQLEADGTENADKAAFLMGINSSELVKGLIHPRIKVGNEYVTRSQNIEQV 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 395 INARDALAKKIYAHLFDFIVEQINQALHFSGKQHTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKLEQEE 474
Cdd:cd14929 317 TYAVGALSKSIYERMFKWLVARINRVLDAKLSRQFFIGILDITGFEILDYNSLEQLCINFTNEKLQQFFNQHMFVLEQEE 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 475 YMKEDIPWTLIDF-YDNQPVIDLIEAKMGILELLDEECLLPHGTDENWLQKLYNNFVNKNSLFEKPRMSNSSFIIQ---- 549
Cdd:cd14929 397 YRKEGIDWVSIDFgLDLQACIDLIEKPMGIFSILEEECMFPKATDLTFKTKLFDNHFGKSVHFQKPKPDKKKFEAHfelv 476
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 550 HFADKVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFQE--SPVPSSPFGAMITVKSAKqvikpntkhFRtTVGNK 627
Cdd:cd14929 477 HYAGVVPYNISGWLEKNKDLLNETVVAVFQKSSNRLLASLFENyiSTDSAIQFGEKKRKKGAS---------FQ-TVASL 546
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 628 FRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGILMTQ-- 705
Cdd:cd14929 547 HKENLNKLMTNLKSTAPHFVRCINPNVNKIPGVLDPYLVLQQLRCNGVLEGIRICREGFPNRLLYADFKQRYCILNPRtf 626
|
650 660 670
....*....|....*....|....*....|....*.
gi 568961004 706 QELSLSDKKEVCKVVLHRLIQDSNQYQFGRTKIFFR 741
Cdd:cd14929 627 PKSKFVSSRKAAEELLGSLEIDHTQYRFGITKVFFK 662
|
|
| Myo5b_CBD |
cd15477 |
Cargo binding domain of myosin 5b; Class V myosins are well studied unconventional myosins, ... |
1375-1746 |
2.02e-158 |
|
Cargo binding domain of myosin 5b; Class V myosins are well studied unconventional myosins, represented by three paralogs (Myo5a,b,c) in vertebrates. Their C-terminal cargo binding domains (CBDs) are important for the binding of a diverse set of cargos, including membrane vesicles, organelles, proteins and mRNA. They interact with several adaptor proteins, in case of Myo5b-CBD, Rab11-family interacting protein 2.
Pssm-ID: 271261 Cd Length: 372 Bit Score: 488.22 E-value: 2.02e-158
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1375 KEDEGKLIQNLILDLKPRgVVVNMIPGLPAHILFMCVRYADSLNDANMLKSLMNSAINGIKHVVKEHFEDLEMLSFWLSN 1454
Cdd:cd15477 1 KEDEALLIRNLVTDLKPQ-AVSATVPCLPAYILYMCIRHADYINDDQKVHSLLTSTINGIKKVLKKHNDDFEMTSFWLAN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1455 TCHFLNCLKQYSGEEEFMKYNSPQQNKNCLNNFDLTEYRQILSDVAIRIYHQFIIVMENNLQPIIVPGMLEYESLQGISG 1534
Cdd:cd15477 80 TCRLLHCLKQYSGDEGFMTQNTAKQNEHCLKNFDLTEYRQVLSDLSIQIYQQLIKIAEGILQPMIVSAMLENESIQGLSG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1535 LKPTGFRKRSSSIDDTDA-YTMTSILQQLSYFYSTMCQNGLDPEIVRQAVKQLFYLVGAVTLNSLLLRKDMCSCRKGMQI 1613
Cdd:cd15477 160 VKPMGYRKRSSSMADGDNsYTLEALIRQLNTFHSIMCDQGLDPEIIQQVFKQLFYMINAVTLNNLLLRKDVCSWSTGMQL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1614 RCNISFLEEWLKDKNVQSSLAKETLEPLSQAAWLLQVKKTTDSDAKEIAQCCTSLSAVQIIKILNSYTPIDDFEKRVNPS 1693
Cdd:cd15477 240 RYNISQLEEWLRGRNLHQSGAAQTMEPLIQAAQLLQLKKKTSEDAEAICSLCTALSTQQIVKILNLYTPLNEFEERVTVS 319
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 568961004 1694 FVRKVQALLNNRGDSAQLMLDTKYLFQVTFPFTASPHALEMTQIPSSFKLGFL 1746
Cdd:cd15477 320 FIRTIQAQLQERNDPPQLLLDTKHMFPVLFPFNPSALTLDSIHIPASLNLDFL 372
|
|
| Myo5a_CBD |
cd15478 |
Cargo binding domain of myosin 5a; Class V myosins are well studied unconventional myosins, ... |
1375-1749 |
3.48e-158 |
|
Cargo binding domain of myosin 5a; Class V myosins are well studied unconventional myosins, represented by three paralogs (Myo5a,b,c) in vertebrates. Their C-terminal cargo binding domains (CBDs) are important for the binding of a diverse set of cargos, including membrane vesicles, organelles, proteins and mRNA. They interact with several adaptor proteins, in case of Myo5a-CBD, melanophilin (MLPH), Rab interacting lysosomal protein-like 2 (RILPL2), and granuphilin. Mutations in human Myo5a (many of which map to the cargo binding domain) lead to Griscelli syndrome, a severe neurological disease.
Pssm-ID: 271262 Cd Length: 375 Bit Score: 487.61 E-value: 3.48e-158
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1375 KEDEGKLIQNLILDLKPRGVVVNMIPGLPAHILFMCVRYADSLNDANMLKSLMNSAINGIKHVVKEHFEDLEMLSFWLSN 1454
Cdd:cd15478 1 KEDEQKLVKNLILELKPRGVAVNLIPGLPAYILFMCVRHADYLNDDQKVRSLLTSTINSIKKVLKKRGDDFETVSFWLSN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1455 TCHFLNCLKQYSGEEEFMKYNSPQQNKNCLNNFDLTEYRQILSDVAIRIYHQFIIVMENNLQPIIVPGMLEYESLQGISG 1534
Cdd:cd15478 81 TCRFLHCLKQYSGEEGFMKHNTSRQNEHCLTNFDLAEYRQVLSDLAIQIYQQLVRVLENILQPMIVSGMLEHETIQGVSG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1535 LKPTGFRKRSSSIDDTDAYTMTSILQQLSYFYSTMCQNGLDPEIVRQAVKQLFYLVGAVTLNSLLLRKDMCSCRKGMQIR 1614
Cdd:cd15478 161 VKPTGLRKRTSSIADEGTYTLDSILRQLNSFHSVMCQHGMDPELIKQVVKQMFYIIGAITLNNLLLRKDMCSWSKGMQIR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1615 CNISFLEEWLKDKNVQSSLAKETLEPLSQAAWLLQVKKTTDSDAKEIAQCCTSLSAVQIIKILNSYTPIDDFEKRVNPSF 1694
Cdd:cd15478 241 YNVSQLEEWLRDKNLMNSGAKETLEPLIQAAQLLQVKKKTDDDAEAICSMCNALTTAQIVKVLNLYTPVNEFEERVSVSF 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 568961004 1695 VRKVQALLNNRGDSAQLMLDTKYLFQVTFPFTASPHALEMTQIPSSFKLGFLRRL 1749
Cdd:cd15478 321 IRTIQMRLRDRKDSPQLLMDAKHIFPVTFPFNPSSLALETIQIPASLGLGFISRV 375
|
|
| MYSc_Myo46 |
cd14907 |
class XLVI myosin, motor domain; The class XLVI myosins are comprised of Alveolata. Not much ... |
83-741 |
3.40e-157 |
|
class XLVI myosin, motor domain; The class XLVI myosins are comprised of Alveolata. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276872 [Multi-domain] Cd Length: 669 Bit Score: 496.48 E-value: 3.40e-157
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 83 VLHNLRIRFAESKlIYTYSGIILVAMNPYKQLP---------IYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNR 153
Cdd:cd14907 3 LLINLKKRYQQDK-IFTYVGPTLIVMNPYKQIDnlfseevmqMYKEQIIQNGEYFDIKKEPPHIYAIAALAFKQLFENNK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 154 NQSIIVSGESGAGKTVSARYAMRYFATVS------------------KSSSNAHVEDKVLASNPITEAVGNAKTTRNDNS 215
Cdd:cd14907 82 KQAIVISGESGAGKTENAKYAMKFLTQLSqqeqnseevltltssiraTSKSTKSIEQKILSCNPILEAFGNAKTVRNDNS 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 216 SRFGKYTEISFDERNQ-IIGANMRTYLLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKL---GSAEEFNYTRMGGN 291
Cdd:cd14907 162 SRFGKYVSILVDKKKRkILGARIQNYLLEKSRVTQQGQGERNYHIFYHLLYGADQQLLQQLGLknqLSGDRYDYLKKSNC 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 292 TVIEGVNDRADMVETQKTFTLLGFKKDFQMDVFKILAAILHLGNVQ---VTTVGNERSSVSeDDSHLKVFCELLGLETSK 368
Cdd:cd14907 242 YEVDTINDEKLFKEVQQSFQTLGFTEEEQDSIWRILAAILLLGNLQfddSTLDDNSPCCVK-NKETLQIIAKLLGIDEEE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 369 VAQWLCNRKIVTSSETVVKPMTRPQAINARDALAKKIYAHLFDFIVEQINQALHFSG--KQHTF------IGVLDIYGFE 440
Cdd:cd14907 321 LKEALTTKIRKVGNQVITSPLSKKECINNRDSLSKELYDRLFNWLVERLNDTIMPKDekDQQLFqnkylsIGLLDIFGFE 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 441 TFDVNSFEQFCINYANEKLQQQFNLHVFKLEQEEYMKEDIPWTL--IDFYDNQPVIDLIE-AKMGILELLDEECLLPHGT 517
Cdd:cd14907 401 VFQNNSFEQLCINYTNEKLQQLYISYVFKAEEQEFKEEGLEDYLnqLSYTDNQDVIDLLDkPPIGIFNLLDDSCKLATGT 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 518 DENWLQKLYNNFvNKNSLFEKPRMSNS-SFIIQHFADKVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFQESPVP 596
Cdd:cd14907 481 DEKLLNKIKKQH-KNNSKLIFPNKINKdTFTIRHTAKEVEYNIEGFREKNKDEISQSIINCIQNSKNRIISSIFSGEDGS 559
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 597 SSPFGAMITVKSAKQvikpntkhfrTTVGNKFRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVL 676
Cdd:cd14907 560 QQQNQSKQKKSQKKD----------KFLGSKFRNQMKQLMNELMQCDVHFIRCIKPNEEKKADLFIQGYVLNQIRYLGVL 629
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568961004 677 ETIRISAQSYPSRWTYLEFYSRYGILmtqqelslsdkkevckvvlhrliqdSNQYQFGRTKIFFR 741
Cdd:cd14907 630 ESIRVRKQGYPYRKSYEDFYKQYSLL-------------------------KKNVLFGKTKIFMK 669
|
|
| MYSc_Myo36 |
cd14897 |
class XXXVI myosin, motor domain; This class of molluscan myosins contains a motor domain ... |
83-741 |
1.73e-154 |
|
class XXXVI myosin, motor domain; This class of molluscan myosins contains a motor domain followed by a GlcAT-I (Beta1,3-glucuronyltransferase I) domain. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276862 [Multi-domain] Cd Length: 635 Bit Score: 488.05 E-value: 1.73e-154
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 83 VLHNLRIRFAESKlIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDM-DPHIFAVAEEAYKQMARNNRNQSIIVSG 161
Cdd:cd14897 3 IVQTLKSRYNKDK-FYTYIGDILVAVNPCKPLPIFDKKHHEEYSNLSVRSQrPPHLFWIADQAYRRLLETGRNQCILVSG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 162 ESGAGKTVSARYAMRYFATVSkSSSNAHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQIIGANMRTYL 241
Cdd:cd14897 82 ESGAGKTESTKYMIKHLMKLS-PSDDSDLLDKIVQINPLLEAFGNASTVMNDNSSRFGKFIELHFTENGQLLGAKIDDYL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 242 LEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYTRmGGNTVIEGVNDRADMVETQKTFT-------LLG 314
Cdd:cd14897 161 LEKSRVVHRGNGEKNFHIFYALFAGMSRDRLLYYFLEDPDCHRILR-DDNRNRPVFNDSEELEYYRQMFHdltnimkLIG 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 315 F-KKDFQMdVFKILAAILHLGNVQVTTVGNERSSVSEDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVVKPMTRPQ 393
Cdd:cd14897 240 FsEEDISV-IFTILAAILHLTNIVFIPDEDTDGVTVADEYPLHAVAKLLGIDEVELTEALISNVNTIRGERIQSWKSLRQ 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 394 AINARDALAKKIYAHLFDFIVEQINQALH----FSGK-QHTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVF 468
Cdd:cd14897 319 ANDSRDALAKDLYSRLFGWIVGQINRNLWpdkdFQIMtRGPSIGILDMSGFENFKINSFDQLCINLSNERLQQYFNDYVF 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 469 KLEQEEYMKEDIPWTLIDFYDNQPVIDLIEAK-MGILELLDEECLLPHGTDENWLQKLyNNFVNKNSLFEKPRMSNSSFI 547
Cdd:cd14897 399 PRERSEYEIEGIEWRDIEYHDNDDVLELFFKKpLGILPLLDEESTFPQSTDSSLVQKL-NKYCGESPRYVASPGNRVAFG 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 548 IQHFADKVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFqespvpsspfgamitvksakqvikpnTKHfrttvgnk 627
Cdd:cd14897 478 IRHYAEQVTYDADGFLEKNRDNLSSDIVGCLLNSNNEFISDLF--------------------------TSY-------- 523
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 628 FRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGILMTQQE 707
Cdd:cd14897 524 FKRSLSDLMTKLNSADPLFVRCIKPNNFLRPNKFDDELVRRQLLCNGLMEIAKIRRDGYPIRIKYEDFVKRYKEICDFSN 603
|
650 660 670
....*....|....*....|....*....|....
gi 568961004 708 LSLSDKKEVCKVVLHrlIQDSNQYQFGRTKIFFR 741
Cdd:cd14897 604 KVRSDDLGKCQKILK--TAGIKGYQFGKTKVFLK 635
|
|
| MYSc_Myh2_insects_mollusks |
cd14911 |
class II myosin heavy chain 2, motor domain; Myosin motor domain of type IIa skeletal muscle ... |
82-741 |
6.57e-153 |
|
class II myosin heavy chain 2, motor domain; Myosin motor domain of type IIa skeletal muscle myosin heavy chain 2 (also called MYH2A, MYHSA2, MyHC-IIa, MYHas8, MyHC-2A) in insects and mollusks. This gene encodes a member of the class II or conventional myosin heavy chains, and functions in skeletal muscle contraction. Mutations in this gene results in inclusion body myopathy-3 and familial congenital myopathy. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276876 [Multi-domain] Cd Length: 674 Bit Score: 485.25 E-value: 6.57e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 82 AVLHNLRIRFAeSKLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVSG 161
Cdd:cd14911 2 SVLHNIKDRYY-SGLIYTYSGLFCVVVNPYKKLPIYTEKIMERYKGIKRHEVPPHVFAITDSAYRNMLGDREDQSILCTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 162 ESGAGKTVSARYAMRYFATVS----KSSSNAH------------VEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEIS 225
Cdd:cd14911 81 ESGAGKTENTKKVIQFLAYVAaskpKGSGAVPhpavnpavligeLEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRIN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 226 FDERNQIIGANMRTYLLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYTRmGGNTVIEGVNDRADMVE 305
Cdd:cd14911 161 FDASGFISGANIETYLLEKSRAIRQAKDERTFHIFYQLLAGATPEQREKFILDDVKSYAFLS-NGSLPVPGVDDYAEFQA 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 306 TQKTFTLLGFKKDFQMDVFKILAAILHLGNVQVTTVGNERSSVSEDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETV 385
Cdd:cd14911 240 TVKSMNIMGMTSEDFNSIFRIVSAVLLFGSMKFRQERNNDQATLPDNTVAQKIAHLLGLSVTDMTRAFLTPRIKVGRDFV 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 386 VKPMTRPQAINARDALAKKIYAHLFDFIVEQINQALHFSGKQ-HTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFN 464
Cdd:cd14911 320 TKAQTKEQVEFAVEAIAKACYERMFKWLVNRINRSLDRTKRQgASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFN 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 465 LHVFKLEQEEYMKEDIPWTLIDF-YDNQPVIDLIEAKMGILELLDEECLLPHGTDENWLQKLYNNFVNKNSLFEKPRMSN 543
Cdd:cd14911 400 HTMFILEQEEYQREGIEWKFIDFgLDLQPTIDLIDKPGGIMALLDEECWFPKATDKTFVDKLVSAHSMHPKFMKTDFRGV 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 544 SSFIIQHFADKVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFQESPVPSSPFGAMITVKSAKQVIKpntKHFRtT 623
Cdd:cd14911 480 ADFAIVHYAGRVDYSAAKWLMKNMDPLNENIVSLLQGSQDPFVVNIWKDAEIVGMAQQALTDTQFGARTRK---GMFR-T 555
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 624 VGNKFRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGILM 703
Cdd:cd14911 556 VSHLYKEQLAKLMDTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFPNRIPFQEFRQRYELLT 635
|
650 660 670
....*....|....*....|....*....|....*....
gi 568961004 704 TQQ-ELSLSDKKEVCKVVLHRLIQDSNQYQFGRTKIFFR 741
Cdd:cd14911 636 PNViPKGFMDGKKACEKMIQALELDSNLYRVGQSKIFFR 674
|
|
| MYSc_Myh7 |
cd14917 |
class II myosin heavy chain 7, motor domain; Myosin motor domain of beta (or slow) type I ... |
81-741 |
2.41e-151 |
|
class II myosin heavy chain 7, motor domain; Myosin motor domain of beta (or slow) type I cardiac muscle myosin heavy chain 7 (also called CMH1, MPD1, and CMD1S). Muscle myosin is a hexameric protein containing 2 heavy chain subunits, 2 alkali light chain subunits, and 2 regulatory light chain subunits. It is expressed predominantly in normal human ventrical and in skeletal muscle tissues rich in slow-twitch type I muscle fibers. Changes in the relative abundance of this protein and the alpha (or fast) heavy subunit of cardiac myosin correlate with the contractile velocity of cardiac muscle. Its expression is also altered during thyroid hormone depletion and hemodynamic overloading. Mutations in this gene are associated with familial hypertrophic cardiomyopathy, myosin storage myopathy, dilated cardiomyopathy, and Laing early-onset distal myopathy. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276881 [Multi-domain] Cd Length: 668 Bit Score: 480.75 E-value: 2.41e-151
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 81 PAVLHNLRIRFAeSKLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVS 160
Cdd:cd14917 1 PAVLYNLKERYA-SWMIYTYSGLFCVTVNPYKWLPVYNAEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILIT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 161 GESGAGKTVSARYAMRYFATVS---------KSSSNAHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQ 231
Cdd:cd14917 80 GESGAGKTVNTKRVIQYFAVIAaigdrskkdQTPGKGTLEDQIIQANPALEAFGNAKTVRNDNSSRFGKFIRIHFGATGK 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 232 IIGANMRTYLLEKSRVVFQSENERNYHIFYQLCaSAQQSEFKHLKLGSAEEFNYTRMG-GNTVIEGVNDRADMVETQKTF 310
Cdd:cd14917 160 LASADIETYLLEKSRVIFQLKAERDYHIFYQIL-SNKKPELLDMLLITNNPYDYAFISqGETTVASIDDAEELMATDNAF 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 311 TLLGFKKDFQMDVFKILAAILHLGNVQVTTVGNERSSVSEDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVVKPMT 390
Cdd:cd14917 239 DVLGFTSEEKNSMYKLTGAIMHFGNMKFKQKQREEQAEPDGTEEADKSAYLMGLNSADLLKGLCHPRVKVGNEYVTKGQN 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 391 RPQAINARDALAKKIYAHLFDFIVEQINQALHFSGKQHTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKL 470
Cdd:cd14917 319 VQQVIYATGALAKAVYEKMFNWMVTRINATLETKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVL 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 471 EQEEYMKEDIPWTLIDF-YDNQPVIDLIEAKMGILELLDEECLLPHGTDENWLQKLYNNFVNKNSLFEKPR----MSNSS 545
Cdd:cd14917 399 EQEEYKKEGIEWTFIDFgMDLQACIDLIEKPMGIMSILEEECMFPKATDMTFKAKLFDNHLGKSNNFQKPRnikgKPEAH 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 546 FIIQHFADKVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFQESPVPSSPfgamitVKSAKQVIKPNTKHfrTTVG 625
Cdd:cd14917 479 FSLIHYAGTVDYNIIGWLQKNKDPLNETVVGLYQKSSLKLLSNLFANYAGADAP------IEKGKGKAKKGSSF--QTVS 550
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 626 NKFRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGILMTQ 705
Cdd:cd14917 551 ALHRENLNKLMTNLRSTHPHFVRCIIPNETKSPGVMDNPLVMHQLRCNGVLEGIRICRKGFPNRILYGDFRQRYRILNPA 630
|
650 660 670
....*....|....*....|....*....|....*...
gi 568961004 706 Q--ELSLSDKKEVCKVVLHRLIQDSNQYQFGRTKIFFR 741
Cdd:cd14917 631 AipEGQFIDSRKGAEKLLSSLDIDHNQYKFGHTKVFFK 668
|
|
| MYSc_Myo47 |
cd14908 |
class XLVII myosin, motor domain; The class XLVII myosins are comprised of Stramenopiles. Not ... |
81-741 |
1.24e-149 |
|
class XLVII myosin, motor domain; The class XLVII myosins are comprised of Stramenopiles. Not much is known about this myosin class. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276873 [Multi-domain] Cd Length: 682 Bit Score: 476.32 E-value: 1.24e-149
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 81 PAVLHNLRIRFAESKlIYTYSGIILVAMNPYKQLPIYGDAIIHAY------SGQNM---GDMDPHIFAVAEEAYKQMARN 151
Cdd:cd14908 1 PAILHSLSRRFFRGI-IYTWTGPVLIAVNPFQRLPLYGKEILESYrqegllRSQGIespQALGPHVFAIADRSYRQMMSE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 152 NR-NQSIIVSGESGAGKTVSARYAMRYFATVSKSSSNAHVE----------DKVLASNPITEAVGNAKTTRNDNSSRFGK 220
Cdd:cd14908 80 IRaSQSILISGESGAGKTESTKIVMLYLTTLGNGEEGAPNEgeelgklsimDRVLQSNPILEAFGNARTLRNDNSSRFGK 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 221 YTEISFDERNQIIGANMRTYLLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGS--------AEEFNYTRMGGNT 292
Cdd:cd14908 160 FIELGFNRAGNLLGAKVQTYLLEKVRLPFHASGERNYHIFYQLLRGGDEEEHEKYEFHDgitgglqlPNEFHYTGQGGAP 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 293 VIEGVNDRADMVETQKTFTLLGFKKDFQMDVFKILAAILHLGNVQVTTVGNERSSVS---EDDSHLKVFCELLGLETSKV 369
Cdd:cd14908 240 DLREFTDEDGLVYTLKAMRTMGWEESSIDTILDIIAGLLHLGQLEFESKEEDGAAEIaeeGNEKCLARVAKLLGVDVDKL 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 370 AQWLCNRKIVTSSETVVKPMTRPQAINARDALAKKIYAHLFDFIVEQINQALHFSGKQ--HTFIGVLDIYGFETFDVNSF 447
Cdd:cd14908 320 LRALTSKIIVVRGKEITTKLTPHKAYDARDALAKTIYGALFLWVVATVNSSINWENDKdiRSSVGVLDIFGFECFAHNSF 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 448 EQFCINYANEKLQQQFNLHVFKLEQEEYMKEDIPWTLIDFYDNQPVIDLIEA-KMGILELLDEECLLP-HGTDENWLQKL 525
Cdd:cd14908 400 EQLCINFTNEALQQQFNQFIFKLEQKEYEKESIEWAFIEFPDNQDCLDTIQAkKKGILTMLDDECRLGiRGSDANYASRL 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 526 YNNF-------VNKNSLFEKPRM--SNSSFIIQHFADKVEYQCE-GFLEKNRDTVydmlveilraskfhlcaaffqespv 595
Cdd:cd14908 480 YETYlpeknqtHSENTRFEATSIqkTKLIFAVRHFAGQVQYTVEtTFCEKNKDEI------------------------- 534
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 596 psspfgamitvksakqvikPNTKHFRTTVGNKFRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGV 675
Cdd:cd14908 535 -------------------PLTADSLFESGQQFKAQLHSLIEMIEDTDPHYIRCIKPNDAAKPDLVTRKRVTEQLRYGGV 595
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 676 LETIRISAQSYPSRWTYLEFYSRYGILM-TQQELSLSDK-----------KEVCKV-VLHRLIQD--------SNQYQFG 734
Cdd:cd14908 596 LEAVRVARSGYPVRLPHKDFFKRYRMLLpLIPEVVLSWSmerldpqklcvKKMCKDlVKGVLSPAmvsmknipEDTMQLG 675
|
....*..
gi 568961004 735 RTKIFFR 741
Cdd:cd14908 676 KSKVFMR 682
|
|
| MYSc_Myo28 |
cd14889 |
class XXVIII myosin, motor domain; These myosins are found in fish, chicken, and mollusks. The ... |
83-741 |
7.90e-149 |
|
class XXVIII myosin, motor domain; These myosins are found in fish, chicken, and mollusks. The tail regions of these class-XXVIII myosins consist of an IQ motif, a short coiled-coil region, and an SH2 domain. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276854 Cd Length: 659 Bit Score: 473.62 E-value: 7.90e-149
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 83 VLHNLRIRFAESkLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQM----ARNNRNQSII 158
Cdd:cd14889 3 LLEVLKVRFMQS-NIYTYVGDILVAINPFKYLHIYEKEVSQKYKCEKKSSLPPHIFAVADRAYQSMlgrlARGPKNQCIV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 159 VSGESGAGKTVSARYAMRYFATVSKSssNAHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFdERNQIIGANMR 238
Cdd:cd14889 82 ISGESGAGKTESTKLLLRQIMELCRG--NSQLEQQILQVNPLLEAFGNAQTVMNDNSSRFGKYIQLRF-RNGHVKGAKIN 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 239 TYLLEKSRVVFQSENERNYHIFYQLCA--SAQQSEFKHLKLGSAEEFNYTRMGGNTVIEGVNDRADmvETQKTFTLLGFK 316
Cdd:cd14889 159 EYLLEKSRVVHQDGGEENFHIFYYMFAgiSAEDRENYGLLDPGKYRYLNNGAGCKREVQYWKKKYD--EVCNAMDMVGFT 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 317 KDFQMDVFKILAAILHLGNVQVTTVGNERSSVSEDDSH-LKVFCELLGLETSKVAQWLCNRKIVTSSETVVKPMTRPQAI 395
Cdd:cd14889 237 EQEEVDMFTILAGILSLGNITFEMDDDEALKVENDSNGwLKAAAGQFGVSEEDLLKTLTCTVTFTRGEQIQRHHTKQQAE 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 396 NARDALAKKIYAHLFDFIVEQINQAL---HFSGKQHTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKLEQ 472
Cdd:cd14889 317 DARDSIAKVAYGRVFGWIVSKINQLLapkDDSSVELREIGILDIFGFENFAVNRFEQACINLANEQLQYFFNHHIFLMEQ 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 473 EEYMKEDIPWTLIDFYDNQPVIDLIEAK-MGILELLDEECLLPHGTDENWLQKLYNNFvNKNSLFEKPRMSNSSFIIQHF 551
Cdd:cd14889 397 KEYKKEGIDWKEITYKDNKPILDLFLNKpIGILSLLDEQSHFPQATDESFVDKLNIHF-KGNSYYGKSRSKSPKFTVNHY 475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 552 ADKVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFQESpvpSSPFGAMITVKSAKQVIKPNTKHFR-TTVGNKFRS 630
Cdd:cd14889 476 AGKVTYNASGFLEKNRDTIPASIRTLFINSATPLLSVLFTAT---RSRTGTLMPRAKLPQAGSDNFNSTRkQSVGAQFKH 552
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 631 SLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGILMTQQELSL 710
Cdd:cd14889 553 SLGVLMEKMFAASPHFVRCIKPNHVKVPGQLDSKYIQDQLRYNGLLETIRIRREGFSWRPSFAEFAERYKILLCEPALPG 632
|
650 660 670
....*....|....*....|....*....|.
gi 568961004 711 SdkKEVCKVVLHRliQDSNQYQFGRTKIFFR 741
Cdd:cd14889 633 T--KQSCLRILKA--TKLVGWKCGKTRLFFK 659
|
|
| MYSc_Myh16 |
cd14934 |
class II myosin heavy chain 16, motor domain; Myosin motor domain of myosin heavy chain 16 ... |
82-741 |
5.69e-148 |
|
class II myosin heavy chain 16, motor domain; Myosin motor domain of myosin heavy chain 16 pseudogene (also called MHC20, MYH16, and myh5), encoding a sarcomeric myosin heavy chain expressed in nonhuman primate masticatory muscles, is inactivated in humans. This cd contains Myh16 in mammals. MYH16 has intermediate fibres between that of slow type 1 and fast 2B fibres, but exert more force than any other fibre type examined. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Some of the data used for this classification were produced by the CyMoBase team at the Max-Planck-Institute for Biophysical Chemistry. The sequence names are composed of the species abbreviation followed by the protein abbreviation and optional protein classifier and variant designations.
Pssm-ID: 276896 [Multi-domain] Cd Length: 659 Bit Score: 471.05 E-value: 5.69e-148
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 82 AVLHNLRIRFAESKlIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVSG 161
Cdd:cd14934 2 SVLDNLRQRYTNMR-IYTYSGLFCVTVNPYKWLPIYGARVANMYKGKKRTEMPPHLFSISDNAYHDMLMDRENQSMLITG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 162 ESGAGKTVSARYAMRYFATVSKSSSNA-----HVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQIIGAN 236
Cdd:cd14934 81 ESGAGKTENTKKVIQYFANIGGTGKQSsdgkgSLEDQIIQANPVLEAFGNAKTTRNNNSSRFGKFIRIHFGTTGKLAGAD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 237 MRTYLLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKL-GSAEEFNYTRMGgNTVIEGVNDRADMVETQKTFTLLGF 315
Cdd:cd14934 161 IESYLLEKSRVISQQAAERGYHIFYQILSNKKPELIESLLLvPNPKEYHWVSQG-VTVVDNMDDGEELQITDVAFDVLGF 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 316 KKDFQMDVFKILAAILHLGNVQVTTVGNERSSVSEDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVVKPMTRPQAI 395
Cdd:cd14934 240 SAEEKIGVYKLTGGIMHFGNMKFKQKPREEQAEVDTTEVADKVAHLMGLNSGELQKGITRPRVKVGNEFVQKGQNMEQCN 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 396 NARDALAKKIYAHLFDFIVEQINQALHFSGKQHTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKLEQEEY 475
Cdd:cd14934 320 NSIGALGKAVYDKMFKWLVVRINKTLDTKMQRQFFIGVLDIAGFEIFEFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEY 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 476 MKEDIPWTLIDF-YDNQPVIDLIEAKMGILELLDEECLLPHGTDENWLQKLYNNFVNKNSLFEKP-----RMSNSSFIIQ 549
Cdd:cd14934 400 KREGIEWVFIDFgLDLQACIDLLEKPMGIFSILEEQCVFPKATDATFKAALYDNHLGKSSNFLKPkggkgKGPEAHFELV 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 550 HFADKVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFQESPVPSSpfgamitvkSAKQviKPNTKHFrtTVGNKFR 629
Cdd:cd14934 480 HYAGTVGYNITGWLEKNKDPLNETVVGLFQKSSLGLLALLFKEEEAPAG---------SKKQ--KRGSSFM--TVSNFYR 546
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 630 SSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGILMTQQ-EL 708
Cdd:cd14934 547 EQLNKLMTTLHSTAPHFVRCIVPNEFKQSGVVDAHLIMHQLACNGVLEGIRICRKGFPNRLQYPEFKQRYQVLNPNViPQ 626
|
650 660 670
....*....|....*....|....*....|...
gi 568961004 709 SLSDKKEVCKVVLHRLIQDSNQYQFGRTKIFFR 741
Cdd:cd14934 627 GFVDNKKASELLLGSIDLDVNEYKIGHTKVFFR 659
|
|
| MYSc_Myh6 |
cd14916 |
class II myosin heavy chain 6, motor domain; Myosin motor domain of alpha (or fast) cardiac ... |
81-741 |
1.90e-147 |
|
class II myosin heavy chain 6, motor domain; Myosin motor domain of alpha (or fast) cardiac muscle myosin heavy chain 6. Cardiac muscle myosin is a hexamer consisting of two heavy chain subunits, two light chain subunits, and two regulatory subunits. This gene encodes the alpha heavy chain subunit of cardiac myosin. Mutations in this gene cause familial hypertrophic cardiomyopathy and atrial septal defect. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276880 [Multi-domain] Cd Length: 670 Bit Score: 470.31 E-value: 1.90e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 81 PAVLHNLRIRFAeSKLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVS 160
Cdd:cd14916 1 PAVLYNLKERYA-AWMIYTYSGLFCVTVNPYKWLPVYNAEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILIT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 161 GESGAGKTVSARYAMRYFATVSK----------SSSNAHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERN 230
Cdd:cd14916 80 GESGAGKTVNTKRVIQYFASIAAigdrskkenpNANKGTLEDQIIQANPALEAFGNAKTVRNDNSSRFGKFIRIHFGATG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 231 QIIGANMRTYLLEKSRVVFQSENERNYHIFYQLCaSAQQSEFKHLKLGSAEEFNYTRMG-GNTVIEGVNDRADMVETQKT 309
Cdd:cd14916 160 KLASADIETYLLEKSRVIFQLKAERNYHIFYQIL-SNKKPELLDMLLVTNNPYDYAFVSqGEVSVASIDDSEELLATDSA 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 310 FTLLGFKKDFQMDVFKILAAILHLGNVQVTTVGNERSSVSEDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVVKPM 389
Cdd:cd14916 239 FDVLGFTAEEKAGVYKLTGAIMHYGNMKFKQKQREEQAEPDGTEDADKSAYLMGLNSADLLKGLCHPRVKVGNEYVTKGQ 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 390 TRPQAINARDALAKKIYAHLFDFIVEQINQALHFSGKQHTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFK 469
Cdd:cd14916 319 SVQQVYYSIGALAKSVYEKMFNWMVTRINATLETKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFV 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 470 LEQEEYMKEDIPWTLIDF-YDNQPVIDLIEAKMGILELLDEECLLPHGTDENWLQKLYNNFVNKNSLFEKPR----MSNS 544
Cdd:cd14916 399 LEQEEYKKEGIEWEFIDFgMDLQACIDLIEKPMGIMSILEEECMFPKASDMTFKAKLYDNHLGKSNNFQKPRnvkgKQEA 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 545 SFIIQHFADKVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFqespvpSSPFGAMITVKSAKQVIKPNTKHFRtTV 624
Cdd:cd14916 479 HFSLVHYAGTVDYNILGWLEKNKDPLNETVVGLYQKSSLKLMATLF------STYASADTGDSGKGKGGKKKGSSFQ-TV 551
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 625 GNKFRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGIL-- 702
Cdd:cd14916 552 SALHRENLNKLMTNLKTTHPHFVRCIIPNERKAPGVMDNPLVMHQLRCNGVLEGIRICRKGFPNRILYGDFRQRYRILnp 631
|
650 660 670
....*....|....*....|....*....|....*....
gi 568961004 703 MTQQELSLSDKKEVCKVVLHRLIQDSNQYQFGRTKIFFR 741
Cdd:cd14916 632 AAIPEGQFIDSRKGAEKLLGSLDIDHNQYKFGHTKVFFK 670
|
|
| MYSc_Myh8 |
cd14918 |
class II myosin heavy chain 8, motor domain; Myosin motor domain of perinatal skeletal muscle ... |
81-741 |
2.14e-147 |
|
class II myosin heavy chain 8, motor domain; Myosin motor domain of perinatal skeletal muscle myosin heavy chain 8 (also called MyHC-peri, MyHC-pn). Myosin is a hexameric protein composed of a pair of myosin heavy chains (MYH) and two pairs of nonidentical light chains. A mutation in this gene results in trismus-pseudocamptodactyly syndrome. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276882 [Multi-domain] Cd Length: 668 Bit Score: 469.99 E-value: 2.14e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 81 PAVLHNLRIRFAeSKLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVS 160
Cdd:cd14918 1 PGVLYNLKERYA-AWMIYTYSGLFCVTVNPYKWLPVYNPEVVAAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILIT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 161 GESGAGKTVSARYAMRYFATVSKSSS---------NAHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQ 231
Cdd:cd14918 80 GESGAGKTVNTKRVIQYFATIAVTGEkkkeesgkmQGTLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIHFGTTGK 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 232 IIGANMRTYLLEKSRVVFQSENERNYHIFYQLcASAQQSEFKHLKLGSAEEFNYTRMG-GNTVIEGVNDRADMVETQKTF 310
Cdd:cd14918 160 LASADIETYLLEKSRVTFQLKAERSYHIFYQI-TSNKKPDLIEMLLITTNPYDYAFVSqGEITVPSIDDQEELMATDSAI 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 311 TLLGFKKDFQMDVFKILAAILHLGNVQVTTVGNERSSVSEDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVVKPMT 390
Cdd:cd14918 239 DILGFTPEEKVSIYKLTGAVMHYGNMKFKQKQREEQAEPDGTEVADKAAYLQSLNSADLLKALCYPRVKVGNEYVTKGQT 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 391 RPQAINARDALAKKIYAHLFDFIVEQINQALHFSGKQHTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKL 470
Cdd:cd14918 319 VQQVYNAVGALAKAVYEKMFLWMVTRINQQLDTKQPRQYFIGVLDIAGFEIFDFNSLEQLCINFTNEKLQQFFNHHMFVL 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 471 EQEEYMKEDIPWTLIDF-YDNQPVIDLIEAKMGILELLDEECLLPHGTDENWLQKLYNNFVNKNSLFEKPRM----SNSS 545
Cdd:cd14918 399 EQEEYKKEGIEWTFIDFgMDLAACIELIEKPLGIFSILEEECMFPKATDTSFKNKLYDQHLGKSANFQKPKVvkgkAEAH 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 546 FIIQHFADKVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFqespvpsSPFGAMITVKSAKQVIKPNTKHFRtTVG 625
Cdd:cd14918 479 FSLIHYAGTVDYNITGWLDKNKDPLNDTVVGLYQKSAMKTLASLF-------STYASAEADSGAKKGAKKKGSSFQ-TVS 550
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 626 NKFRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGILMTQ 705
Cdd:cd14918 551 ALFRENLNKLMTNLRSTHPHFVRCIIPNETKTPGAMEHELVLHQLRCNGVLEGIRICRKGFPSRILYGDFKQRYKVLNAS 630
|
650 660 670
....*....|....*....|....*....|....*...
gi 568961004 706 Q--ELSLSDKKEVCKVVLHRLIQDSNQYQFGRTKIFFR 741
Cdd:cd14918 631 AipEGQFIDSKKASEKLLASIDIDHTQYKFGHTKVFFK 668
|
|
| MYSc_Myh18 |
cd14932 |
class II myosin heavy chain 18, motor domain; Myosin motor domain of muscle myosin heavy chain ... |
82-741 |
6.19e-147 |
|
class II myosin heavy chain 18, motor domain; Myosin motor domain of muscle myosin heavy chain 18. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276895 [Multi-domain] Cd Length: 676 Bit Score: 469.12 E-value: 6.19e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 82 AVLHNLRIRFAeSKLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVSG 161
Cdd:cd14932 2 SVLHNLKERYY-SGLIYTYSGLFCVVINPYKYLPIYSEEIVNMYKGKKRHEMPPHIYAITDTAYRSMMQDREDQSILCTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 162 ESGAGKTVSARYAMRYFATVSKSS-----------SNAHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERN 230
Cdd:cd14932 81 ESGAGKTENTKKVIQYLAYVASSFktkkdqssialSHGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVNG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 231 QIIGANMRTYLLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLgsaEEFNYTRM--GGNTVIEGVNDRADMVETQK 308
Cdd:cd14932 161 YIVGANIETYLLEKSRAIRQAKDERAFHIFYYLLTGAGDKLRSELCL---EDYSKYRFlsNGNVTIPGQQDKELFAETME 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 309 TFTLLGFKKDFQMDVFKILAAILHLGNVQVTTVGNERSSVSEDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVVKP 388
Cdd:cd14932 238 AFRIMSIPEEEQTGLLKVVSAVLQLGNMSFKKERNSDQASMPDDTAAQKVCHLLGMNVTDFTRAILSPRIKVGRDYVQKA 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 389 MTRPQAINARDALAKKIYAHLFDFIVEQINQALHFSGKQ-HTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHV 467
Cdd:cd14932 318 QTQEQAEFAVEALAKASYERMFRWLVMRINKALDKTKRQgASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTM 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 468 FKLEQEEYMKEDIPWTLIDF-YDNQPVIDLIEAKM---GILELLDEECLLPHGTDENWLQKLYNNFVNkNSLFEKPR--M 541
Cdd:cd14932 398 FILEQEEYQREGIEWSFIDFgLDLQPCIELIEKPNgppGILALLDEECWFPKATDKSFVEKVVQEQGN-NPKFQKPKklK 476
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 542 SNSSFIIQHFADKVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFQESP--VPSSPFGAMitVKSAKQVIKPNTKH 619
Cdd:cd14932 477 DDADFCIIHYAGKVDYKANEWLMKNMDPLNENVATLLNQSTDKFVSELWKDVDriVGLDKVAGM--GESLHGAFKTRKGM 554
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 620 FRtTVGNKFRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRY 699
Cdd:cd14932 555 FR-TVGQLYKEQLMNLMTTLRNTNPNFVRCIIPNHEKKAGKLAHHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRY 633
|
650 660 670 680
....*....|....*....|....*....|....*....|...
gi 568961004 700 GILM-TQQELSLSDKKEVCKVVLHRLIQDSNQYQFGRTKIFFR 741
Cdd:cd14932 634 EILTpNAIPKGFMDGKQACVLMVKALELDPNLYRIGQSKVFFR 676
|
|
| MYSc_Myh2_mammals |
cd14912 |
class II myosin heavy chain 2, motor domain; Myosin motor domain of type IIa skeletal muscle ... |
81-741 |
1.14e-146 |
|
class II myosin heavy chain 2, motor domain; Myosin motor domain of type IIa skeletal muscle myosin heavy chain 2 (also called MYH2A, MYHSA2, MyHC-IIa, MYHas8, MyHC-2A) in mammals. Mutations in this gene results in inclusion body myopathy-3 and familial congenital myopathy. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276877 [Multi-domain] Cd Length: 673 Bit Score: 468.06 E-value: 1.14e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 81 PAVLHNLRIRFAeSKLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVS 160
Cdd:cd14912 1 PAVLYNLKERYA-AWMIYTYSGLFCVTVNPYKWLPVYNPEVVTAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILIT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 161 GESGAGKTVSARYAMRYFATVSKSSS-----------NAHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDER 229
Cdd:cd14912 80 GESGAGKTVNTKRVIQYFATIAVTGEkkkeeitsgkmQGTLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIHFGTT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 230 NQIIGANMRTYLLEKSRVVFQSENERNYHIFYQLcASAQQSEFKHLKLGSAEEFNYTRMG-GNTVIEGVNDRADMVETQK 308
Cdd:cd14912 160 GKLASADIETYLLEKSRVTFQLKAERSYHIFYQI-TSNKKPELIEMLLITTNPYDYPFVSqGEISVASIDDQEELMATDS 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 309 TFTLLGFKKDFQMDVFKILAAILHLGNVQVTTVGNERSSVSEDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVVKP 388
Cdd:cd14912 239 AIDILGFTNEEKVSIYKLTGAVMHYGNLKFKQKQREEQAEPDGTEVADKAAYLQSLNSADLLKALCYPRVKVGNEYVTKG 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 389 MTRPQAINARDALAKKIYAHLFDFIVEQINQALHFSGKQHTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVF 468
Cdd:cd14912 319 QTVEQVTNAVGALAKAVYEKMFLWMVARINQQLDTKQPRQYFIGVLDIAGFEIFDFNSLEQLCINFTNEKLQQFFNHHMF 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 469 KLEQEEYMKEDIPWTLIDF-YDNQPVIDLIEAKMGILELLDEECLLPHGTDENWLQKLYNNFVNKNSLFEKPRM----SN 543
Cdd:cd14912 399 VLEQEEYKKEGIEWTFIDFgMDLAACIELIEKPMGIFSILEEECMFPKATDTSFKNKLYEQHLGKSANFQKPKVvkgkAE 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 544 SSFIIQHFADKVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFQESPVPSSPFGAmitvKSAKQVIKPNTKHFRtT 623
Cdd:cd14912 479 AHFSLIHYAGVVDYNITGWLDKNKDPLNETVVGLYQKSAMKTLAYLFSGAQTAEGASAG----GGAKKGGKKKGSSFQ-T 553
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 624 VGNKFRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGILM 703
Cdd:cd14912 554 VSALFRENLNKLMTNLRSTHPHFVRCIIPNETKTPGAMEHELVLHQLRCNGVLEGIRICRKGFPSRILYADFKQRYKVLN 633
|
650 660 670 680
....*....|....*....|....*....|....*....|
gi 568961004 704 TQQ--ELSLSDKKEVCKVVLHRLIQDSNQYQFGRTKIFFR 741
Cdd:cd14912 634 ASAipEGQFIDSKKASEKLLASIDIDHTQYKFGHTKVFFK 673
|
|
| MYSc_Myh1_mammals |
cd14910 |
class II myosin heavy chain 1, motor domain; Myosin motor domain of type IIx skeletal muscle ... |
81-741 |
9.15e-146 |
|
class II myosin heavy chain 1, motor domain; Myosin motor domain of type IIx skeletal muscle myosin heavy chain 1 (also called MYHSA1, MYHa, MyHC-2X/D, MGC133384) in mammals. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276875 [Multi-domain] Cd Length: 671 Bit Score: 465.74 E-value: 9.15e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 81 PAVLHNLRIRFAeSKLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVS 160
Cdd:cd14910 1 PAVLYNLKERYA-AWMIYTYSGLFCVTVNPYKWLPVYNAEVVTAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILIT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 161 GESGAGKTVSARYAMRYFATVSKSSS-----------NAHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDER 229
Cdd:cd14910 80 GESGAGKTVNTKRVIQYFATIAVTGEkkkeeatsgkmQGTLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIHFGTT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 230 NQIIGANMRTYLLEKSRVVFQSENERNYHIFYQLcASAQQSEFKHLKLGSAEEFNYTRMG-GNTVIEGVNDRADMVETQK 308
Cdd:cd14910 160 GKLASADIETYLLEKSRVTFQLKAERSYHIFYQI-MSNKKPDLIEMLLITTNPYDYAFVSqGEITVPSIDDQEELMATDS 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 309 TFTLLGFKKDFQMDVFKILAAILHLGNVQVTTVGNERSSVSEDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVVKP 388
Cdd:cd14910 239 AIEILGFTSDERVSIYKLTGAVMHYGNMKFKQKQREEQAEPDGTEVADKAAYLQNLNSADLLKALCYPRVKVGNEYVTKG 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 389 MTRPQAINARDALAKKIYAHLFDFIVEQINQALHFSGKQHTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVF 468
Cdd:cd14910 319 QTVQQVYNAVGALAKAVYDKMFLWMVTRINQQLDTKQPRQYFIGVLDIAGFEIFDFNSLEQLCINFTNEKLQQFFNHHMF 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 469 KLEQEEYMKEDIPWTLIDF-YDNQPVIDLIEAKMGILELLDEECLLPHGTDENWLQKLYNNFVNKNSLFEKPRMSN---- 543
Cdd:cd14910 399 VLEQEEYKKEGIEWEFIDFgMDLAACIELIEKPMGIFSILEEECMFPKATDTSFKNKLYEQHLGKSNNFQKPKPAKgkve 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 544 SSFIIQHFADKVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFQESPVPSSPFGAmitvksAKQVIKPNTKHFRtT 623
Cdd:cd14910 479 AHFSLIHYAGTVDYNIAGWLDKNKDPLNETVVGLYQKSSMKTLALLFSGAAAAEAEEGG------GKKGGKKKGSSFQ-T 551
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 624 VGNKFRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGILM 703
Cdd:cd14910 552 VSALFRENLNKLMTNLRSTHPHFVRCIIPNETKTPGAMEHELVLHQLRCNGVLEGIRICRKGFPSRILYADFKQRYKVLN 631
|
650 660 670 680
....*....|....*....|....*....|....*....|
gi 568961004 704 TQQ--ELSLSDKKEVCKVVLHRLIQDSNQYQFGRTKIFFR 741
Cdd:cd14910 632 ASAipEGQFIDSKKASEKLLGSIDIDHTQYKFGHTKVFFK 671
|
|
| MYSc_Myo30 |
cd14891 |
class XXX myosin, motor domain; Myosins of class XXX are composed of an amino-terminal ... |
81-741 |
2.27e-145 |
|
class XXX myosin, motor domain; Myosins of class XXX are composed of an amino-terminal SH3-like domain, two IQ motifs, a coiled-coil region and a PX domain. The myosin classes XXX to XXXIV contain members from Phytophthora species and Hyaloperonospora parasitica. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276856 Cd Length: 645 Bit Score: 463.36 E-value: 2.27e-145
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 81 PAVLHNLRIRFA-ESKLIYTYSGIILVAMNPYKQLPiygDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNN---RNQS 156
Cdd:cd14891 1 AGILHNLEERSKlDNQRPYTFMANVLIAVNPLRRLP---EPDKSDYINTPLDPCPPHPYAIAEMAYQQMCLGSgrmQNQS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 157 IIVSGESGAGKTVSARYAMRY------------FATVSKSSSNAH-----VEDKVLASNPITEAVGNAKTTRNDNSSRFG 219
Cdd:cd14891 78 IVISGESGAGKTETSKIILRFlttravggkkasGQDIEQSSKKRKlsvtsLDERLMDTNPILESFGNAKTLRNHNSSRFG 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 220 KYTEISF-DERNQIIGANMRTYLLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYTRMGGNTVIEGVN 298
Cdd:cd14891 158 KFMKLQFtKDKFKLAGAFIETYLLEKSRLVAQPPGERNFHIFYQLLAGASAELLKELLLLSPEDFIYLNQSGCVSDDNID 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 299 DRADMVETQKTFTLLGFKKDFQMDVFKILAAILHLGNVQV----TTVGNERSSVSEDDSHLKVFCELLGLETSKVAQWLC 374
Cdd:cd14891 238 DAANFDNVVSALDTVGIDEDLQLQIWRILAGLLHLGNIEFdeedTSEGEAEIASESDKEALATAAELLGVDEEALEKVIT 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 375 NRKIVTSSETVVKPMTRPQAINARDALAKKIYAHLFDFIVEQINQALHFSGKQHTFIGVLDIYGFETFD-VNSFEQFCIN 453
Cdd:cd14891 318 QREIVTRGETFTIKRNAREAVYSRDAIAKSIYERLFLWIVQQINTSLGHDPDPLPYIGVLDIFGFESFEtKNDFEQLLIN 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 454 YANEKLQQQFNLHVFKLEQEEYMKEDIPWTLIDFYDNQPVIDLIEAKM-GILELLDEECLLPHGTDENWLQKLYNNFvNK 532
Cdd:cd14891 398 YANEALQATFNQQVFIAEQELYKSEGIDVGVITWPDNRECLDLIASKPnGILPLLDNEARNPNPSDAKLNETLHKTH-KR 476
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 533 NSLF--EKPRMSNSSFIIQHFADKVEYQCEGFLEKNRDTVYDMLVEILRASkfhlcaaffqespvpsspfgamitvksak 610
Cdd:cd14891 477 HPCFprPHPKDMREMFIVKHYAGTVSYTIGSFIDKNNDIIPEDFEDLLASS----------------------------- 527
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 611 qvikpntkhfrttvgNKFRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRW 690
Cdd:cd14891 528 ---------------AKFSDQMQELVDTLEATRCNFIRCIKPNAAMKVGVFDNRYVVDQLRCSGILQTCEVLKVGLPTRV 592
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|...
gi 568961004 691 TYLEFYSRYGILMTQQELSL--SDKKEVCKVVLHRLIQDSNQYQFGRTKIFFR 741
Cdd:cd14891 593 TYAELVDVYKPVLPPSVTRLfaENDRTLTQAILWAFRVPSDAYRLGRTRVFFR 645
|
|
| MYSc_Myh4 |
cd14915 |
class II myosin heavy chain 4, motor domain; Myosin motor domain of skeletal muscle myosin ... |
81-741 |
4.08e-144 |
|
class II myosin heavy chain 4, motor domain; Myosin motor domain of skeletal muscle myosin heavy chain 4 (also called MYH2B, MyHC-2B, MyHC-IIb). Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276879 [Multi-domain] Cd Length: 671 Bit Score: 461.12 E-value: 4.08e-144
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 81 PAVLHNLRIRFAeSKLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVS 160
Cdd:cd14915 1 PAVLYNLKERYA-AWMIYTYSGLFCVTVNPYKWLPVYNPEVVTAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILIT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 161 GESGAGKTVSARYAMRYFATVSKSSS-----------NAHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDER 229
Cdd:cd14915 80 GESGAGKTVNTKRVIQYFATIAVTGEkkkeeaasgkmQGTLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIHFGAT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 230 NQIIGANMRTYLLEKSRVVFQSENERNYHIFYQLcASAQQSEFKHLKLGSAEEFNYTRMG-GNTVIEGVNDRADMVETQK 308
Cdd:cd14915 160 GKLASADIETYLLEKSRVTFQLKAERSYHIFYQI-MSNKKPELIEMLLITTNPYDFAFVSqGEITVPSIDDQEELMATDS 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 309 TFTLLGFKKDFQMDVFKILAAILHLGNVQVTTVGNERSSVSEDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVVKP 388
Cdd:cd14915 239 AVDILGFSADEKVAIYKLTGAVMHYGNMKFKQKQREEQAEPDGTEVADKAAYLTSLNSADLLKALCYPRVKVGNEYVTKG 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 389 MTRPQAINARDALAKKIYAHLFDFIVEQINQALHFSGKQHTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVF 468
Cdd:cd14915 319 QTVQQVYNSVGALAKAIYEKMFLWMVTRINQQLDTKQPRQYFIGVLDIAGFEIFDFNSLEQLCINFTNEKLQQFFNHHMF 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 469 KLEQEEYMKEDIPWTLIDF-YDNQPVIDLIEAKMGILELLDEECLLPHGTDENWLQKLYNNFVNKNSLFEKPR----MSN 543
Cdd:cd14915 399 VLEQEEYKKEGIEWEFIDFgMDLAACIELIEKPMGIFSILEEECMFPKATDTSFKNKLYEQHLGKSNNFQKPKpakgKAE 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 544 SSFIIQHFADKVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFQESPVPSSPFGAmitvksAKQVIKPNTKHFRtT 623
Cdd:cd14915 479 AHFSLVHYAGTVDYNIAGWLDKNKDPLNETVVGLYQKSGMKTLAFLFSGGQTAEAEGGG------GKKGGKKKGSSFQ-T 551
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 624 VGNKFRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGILM 703
Cdd:cd14915 552 VSALFRENLNKLMTNLRSTHPHFVRCLIPNETKTPGAMEHELVLHQLRCNGVLEGIRICRKGFPSRILYADFKQRYKVLN 631
|
650 660 670 680
....*....|....*....|....*....|....*....|
gi 568961004 704 TQQ--ELSLSDKKEVCKVVLHRLIQDSNQYQFGRTKIFFR 741
Cdd:cd14915 632 ASAipEGQFIDSKKASEKLLGSIDIDHTQYKFGHTKVFFK 671
|
|
| MYSc_Myh13 |
cd14923 |
class II myosin heavy chain 13, motor domain; Myosin motor domain of skeletal muscle myosin ... |
81-741 |
8.31e-144 |
|
class II myosin heavy chain 13, motor domain; Myosin motor domain of skeletal muscle myosin heavy chain 13 (also called MyHC-eo) in mammals, chicken, and green anole. Myh13 is a myosin whose expression is restricted primarily to the extrinsic eye muscles which are specialized for function in eye movement. Class II myosins, also called conventional myosins, are the myosin type responsible for producing muscle contraction in muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276887 [Multi-domain] Cd Length: 671 Bit Score: 460.31 E-value: 8.31e-144
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 81 PAVLHNLRIRFAeSKLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVS 160
Cdd:cd14923 1 PAVLYNLKERYA-AWMIYTYSGLFCVTVNPYKWLPVYNPEVVAAYRGKKRQEAPPHIFSISDNAYQFMLTDRDNQSILIT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 161 GESGAGKTVSARYAMRYFATVS----------KSSSNAHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERN 230
Cdd:cd14923 80 GESGAGKTVNTKRVIQYFATIAvtgdkkkeqqPGKMQGTLEDQIIQANPLLEAFGNAKTVRNDNSSRFGKFIRIHFGATG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 231 QIIGANMRTYLLEKSRVVFQSENERNYHIFYQLcASAQQSEFKHLKLGSAEEFNYTRMG-GNTVIEGVNDRADMVETQKT 309
Cdd:cd14923 160 KLASADIETYLLEKSRVTFQLSSERSYHIFYQI-MSNKKPELIDLLLISTNPFDFPFVSqGEVTVASIDDSEELLATDNA 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 310 FTLLGFKKDFQMDVFKILAAILHLGNVQVTTVGNERSSVSEDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVVKPM 389
Cdd:cd14923 239 IDILGFSSEEKVGIYKLTGAVMHYGNMKFKQKQREEQAEPDGTEVADKAGYLMGLNSAEMLKGLCCPRVKVGNEYVTKGQ 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 390 TRPQAINARDALAKKIYAHLFDFIVEQINQALHFSGKQHTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFK 469
Cdd:cd14923 319 NVQQVTNSVGALAKAVYEKMFLWMVTRINQQLDTKQPRQYFIGVLDIAGFEIFDFNSLEQLCINFTNEKLQQFFNHHMFV 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 470 LEQEEYMKEDIPWTLIDF-YDNQPVIDLIEAKMGILELLDEECLLPHGTDENWLQKLYNNFVNKNSLFEKPR----MSNS 544
Cdd:cd14923 399 LEQEEYKKEGIEWEFIDFgMDLAACIELIEKPMGIFSILEEECMFPKATDTSFKNKLYDQHLGKSNNFQKPKpakgKAEA 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 545 SFIIQHFADKVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFQESPVPSSPFGAmitvkSAKQVIKPNTKHFRtTV 624
Cdd:cd14923 479 HFSLVHYAGTVDYNIAGWLDKNKDPLNETVVGLYQKSSLKLLSFLFSNYAGAEAGDSG-----GSKKGGKKKGSSFQ-TV 552
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 625 GNKFRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGILMT 704
Cdd:cd14923 553 SAVFRENLNKLMTNLRSTHPHFVRCLIPNETKTPGVMDHYLVMHQLRCNGVLEGIRICRKGFPSRILYADFKQRYRILNA 632
|
650 660 670
....*....|....*....|....*....|....*....
gi 568961004 705 QQ--ELSLSDKKEVCKVVLHRLIQDSNQYQFGRTKIFFR 741
Cdd:cd14923 633 SAipEGQFIDSKNASEKLLNSIDVDREQYRFGHTKVFFK 671
|
|
| MYSc_Myh11 |
cd14921 |
class II myosin heavy chain 11, motor domain; Myosin motor domain of smooth muscle myosin ... |
82-741 |
4.55e-143 |
|
class II myosin heavy chain 11, motor domain; Myosin motor domain of smooth muscle myosin heavy chain 11 (also called SMMHC, SMHC). The gene product is a subunit of a hexameric protein that consists of two heavy chain subunits and two pairs of non-identical light chain subunits. It functions as a major contractile protein, converting chemical energy into mechanical energy through the hydrolysis of ATP. The gene encoding a human ortholog of rat NUDE1 is transcribed from the reverse strand of this gene, and its 3' end overlaps with that of the latter. Inversion of the MYH11 locus is one of the most frequent chromosomal aberrations found in acute myeloid leukemia. Alternative splicing generates isoforms that are differentially expressed, with ratios changing during muscle cell maturation. Mutations in MYH11 have been described in individuals with thoracic aortic aneurysms leading to acute aortic dissections with patent ductus arteriosus. MYH11 mutations are also thought to contribute to human colorectal cancer and are also associated with Peutz-Jeghers syndrome. The mutations found in human intestinal neoplasia result in unregulated proteins with constitutive motor activity, similar to the mutant myh11 zebrafish. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276885 [Multi-domain] Cd Length: 673 Bit Score: 458.33 E-value: 4.55e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 82 AVLHNLRIRFAeSKLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVSG 161
Cdd:cd14921 2 SVLHNLRERYF-SGLIYTYSGLFCVVVNPYKHLPIYSEKIVDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 162 ESGAGKTVSARYAMRYFATVSKS-------SSNAHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQIIG 234
Cdd:cd14921 81 ESGAGKTENTKKVIQYLAVVASShkgkkdtSITGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 235 ANMRTYLLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLgsaEEF-NYTRMGGNTVIEGVNDRADMV-ETQKTFTL 312
Cdd:cd14921 161 ANIETYLLEKSRAIRQARDERTFHIFYYLIAGAKEKMRSDLLL---EGFnNYTFLSNGFVPIPAAQDDEMFqETLEAMSI 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 313 LGFKKDFQMDVFKILAAILHLGNVQVTTVGNERSSVSEDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVVKPMTRP 392
Cdd:cd14921 238 MGFSEEEQLSILKVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMGINVTDFTRSILTPRIKVGRDVVQKAQTKE 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 393 QAINARDALAKKIYAHLFDFIVEQINQALHFSGKQ-HTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKLE 471
Cdd:cd14921 318 QADFAIEALAKATYERLFRWILTRVNKALDKTHRQgASFLGILDIAGFEIFEVNSFEQLCINYTNEKLQQLFNHTMFILE 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 472 QEEYMKEDIPWTLIDF-YDNQPVIDLIEAKM---GILELLDEECLLPHGTDENWLQKLYNNFVNkNSLFEKPRM--SNSS 545
Cdd:cd14921 398 QEEYQREGIEWNFIDFgLDLQPCIELIERPNnppGVLALLDEECWFPKATDKSFVEKLCTEQGN-HPKFQKPKQlkDKTE 476
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 546 FIIQHFADKVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFQE-SPVPSSPFGAMITVKSAKQVIKPNTKHFRtTV 624
Cdd:cd14921 477 FSIIHYAGKVDYNASAWLTKNMDPLNDNVTSLLNASSDKFVADLWKDvDRIVGLDQMAKMTESSLPSASKTKKGMFR-TV 555
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 625 GNKFRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGILMT 704
Cdd:cd14921 556 GQLYKEQLGKLMTTLRNTTPNFVRCIIPNHEKRSGKLDAFLVLEQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILAA 635
|
650 660 670
....*....|....*....|....*....|....*...
gi 568961004 705 QQ-ELSLSDKKEVCKVVLHRLIQDSNQYQFGRTKIFFR 741
Cdd:cd14921 636 NAiPKGFMDGKQACILMIKALELDPNLYRIGQSKIFFR 673
|
|
| PTZ00014 |
PTZ00014 |
myosin-A; Provisional |
71-791 |
9.11e-142 |
|
myosin-A; Provisional
Pssm-ID: 240229 [Multi-domain] Cd Length: 821 Bit Score: 459.88 E-value: 9.11e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 71 DLTALSYLHEPAVLHNLRIRFaESKLIYTYSGIILVAMNPYKQLPIYGDAIIHAY-SGQNMGDMDPHIFAVAEEAYKQMA 149
Cdd:PTZ00014 100 DIGLLPHTNIPCVLDFLKHRY-LKNQIYTTADPLLVAINPFKDLGNTTNDWIRRYrDAKDSDKLPPHVFTTARRALENLH 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 150 RNNRNQSIIVSGESGAGKTVSARYAMRYFATVSKSSSNAHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDER 229
Cdd:PTZ00014 179 GVKKSQTIIVSGESGAGKTEATKQIMRYFASSKSGNMDLKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGEE 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 230 NQIIGANMRTYLLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYtrMGGNTV-IEGVNDRADMVETQK 308
Cdd:PTZ00014 259 GGIRYGSIVAFLLEKSRVVTQEDDERSYHIFYQLLKGANDEMKEKYKLKSLEEYKY--INPKCLdVPGIDDVKDFEEVME 336
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 309 TFTLLGFKKDFQMDVFKILAAILHLGNVQVTtvGNERSSVSE----DDSHLKVF---CELLGLETSKVAQWLCNRKIVTS 381
Cdd:PTZ00014 337 SFDSMGLSESQIEDIFSILSGVLLLGNVEIE--GKEEGGLTDaaaiSDESLEVFneaCELLFLDYESLKKELTVKVTYAG 414
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 382 SETVVKPMTRPQAINARDALAKKIYAHLFDFIVEQINQALHFSGKQHTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQ 461
Cdd:PTZ00014 415 NQKIEGPWSKDESEMLKDSLSKAVYEKLFLWIIRNLNATIEPPGGFKVFIGMLDIFGFEVFKNNSLEQLFINITNEMLQK 494
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 462 QFNLHVFKLEQEEYMKEDIPWTLIDFYDNQPVIDLIEAKM-GILELLDEECLLPHGTDENWLQKLYNNFVNKNSLFEKPR 540
Cdd:PTZ00014 495 NFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGkSVLSILEDQCLAPGGTDEKFVSSCNTNLKNNPKYKPAKV 574
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 541 MSNSSFIIQHFADKVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFQESPVPSSPFGamitvksAKQVIkpntkhf 620
Cdd:PTZ00014 575 DSNKNFVIKHTIGDIQYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFEGVEVEKGKLA-------KGQLI------- 640
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 621 rttvGNKFRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYG 700
Cdd:PTZ00014 641 ----GSQFLNQLDSLMSLINSTEPHFIRCIKPNENKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAEFLSQFK 716
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 701 ILmtqqELSLS-----DKKEVCKVVLHRLIQDSNQYQFGRTKIFFR---AGQVAYLEKLRLDKLRQDCIMIQKHVRGWLQ 772
Cdd:PTZ00014 717 YL----DLAVSndsslDPKEKAEKLLERSGLPKDSYAIGKTMVFLKkdaAKELTQIQREKLAAWEPLVSVLEALILKIKK 792
|
730
....*....|....*....
gi 568961004 773 RRKFLRERQAALTIQRYFR 791
Cdd:PTZ00014 793 KRKVRKNIKSLVRIQAHLR 811
|
|
| MYSc_Myh14_mammals |
cd14930 |
class II myosin heavy chain 14 motor domain; Myosin motor domain of non-muscle myosin heavy ... |
82-741 |
4.17e-139 |
|
class II myosin heavy chain 14 motor domain; Myosin motor domain of non-muscle myosin heavy chain 14 (also called FLJ13881, KIAA2034, MHC16, MYH17). Its members include mammals, chickens, and turtles. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Some of the data used for this classification were produced by the CyMoBase team at the Max-Planck-Institute for Biophysical Chemistry. The sequence names are composed of the species abbreviation followed by the protein abbreviation and optional protein classifier and variant designations.
Pssm-ID: 276893 [Multi-domain] Cd Length: 670 Bit Score: 447.23 E-value: 4.17e-139
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 82 AVLHNLRIRFAeSKLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVSG 161
Cdd:cd14930 2 SVLHNLRERYY-SGLIYTYSGLFCVVINPYKQLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSILCTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 162 ESGAGKTVSARYAMRYFATVSKSSSN-------AHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQIIG 234
Cdd:cd14930 81 ESGAGKTENTKKVIQYLAHVASSPKGrkepgvpGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 235 ANMRTYLLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYTRMGGNTviEGVNDRADMVETQKTFTLLG 314
Cdd:cd14930 161 ANIETYLLEKSRAIRQAKDECSFHIFYQLLGGAGEQLKADLLLEPCSHYRFLTNGPSS--SPGQERELFQETLESLRVLG 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 315 FKKDFQMDVFKILAAILHLGNVQVTTVGNERSSVSEDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVVKPMTRPQA 394
Cdd:cd14930 239 FSHEEITSMLRMVSAVLQFGNIVLKRERNTDQATMPDNTAAQKLCRLLGLGVTDFSRALLTPRIKVGRDYVQKAQTKEQA 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 395 INARDALAKKIYAHLFDFIVEQINQALHFSGKQ-HTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKLEQE 473
Cdd:cd14930 319 DFALEALAKATYERLFRWLVLRLNRALDRSPRQgASFLGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQE 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 474 EYMKEDIPWTLIDF-YDNQPVIDLIEAKM---GILELLDEECLLPHGTDENWLQKLYNNfVNKNSLFEKPR--MSNSSFI 547
Cdd:cd14930 399 EYQREGIPWTFLDFgLDLQPCIDLIERPAnppGLLALLDEECWFPKATDKSFVEKVAQE-QGGHPKFQRPRhlRDQADFS 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 548 IQHFADKVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFF----------QESPVPSSPFGAmitvksakqviKPNT 617
Cdd:cd14930 478 VLHYAGKVDYKANEWLMKNMDPLNDNVAALLHQSTDRLTAEIWkdvegivgleQVSSLGDGPPGG-----------RPRR 546
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 618 KHFRtTVGNKFRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYS 697
Cdd:cd14930 547 GMFR-TVGQLYKESLSRLMATLSNTNPSFVRCIVPNHEKRAGKLEPRLVLDQLRCNGVLEGIRICRQGFPNRILFQEFRQ 625
|
650 660 670 680
....*....|....*....|....*....|....*....|....*
gi 568961004 698 RYGILMTQQ-ELSLSDKKEVCKVVLHRLIQDSNQYQFGRTKIFFR 741
Cdd:cd14930 626 RYEILTPNAiPKGFMDGKQACEKMIQALELDPNLYRVGQSKIFFR 670
|
|
| MYSc_Myo34 |
cd14895 |
class XXXIV myosin, motor domain; Class XXXIV myosins are composed of an IQ motif, a short ... |
81-741 |
1.77e-138 |
|
class XXXIV myosin, motor domain; Class XXXIV myosins are composed of an IQ motif, a short coiled-coil region, 5 tandem ANK repeats, and a carboxy-terminal FYVE domain. The myosin classes XXX to XXXIV contain members from Phytophthora species and Hyaloperonospora parasitica. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276860 [Multi-domain] Cd Length: 704 Bit Score: 446.71 E-value: 1.77e-138
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 81 PAVLHNLRIRFAESKlIYTYSGIILVAMNPYKQLPIYGDaiIHAYSGQNMGDMD--PHIFAVAEEAYKQMARNN------ 152
Cdd:cd14895 1 PAFVDYLAQRYGVDQ-VYCRSGAVLIAVNPFKHIPGLYD--LHKYREEMPGWTAlpPHVFSIAEGAYRSLRRRLhepgas 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 153 -RNQSIIVSGESGAGKTVSARYAMRYFATVSK--------SSSNAHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTE 223
Cdd:cd14895 78 kKNQTILVSGESGAGKTETTKFIMNYLAESSKhttatsssKRRRAISGSELLSANPILESFGNARTLRNDNSSRFGKFVR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 224 ISF-----DERNQIIGANMRTYLLEKSRVVFQSENERNYHIFYQLCASAQQSEFK--HLKLGSAEEFNYTRMGGNTVI-E 295
Cdd:cd14895 158 MFFeghelDTSLRMIGTSVETYLLEKVRVVHQNDGERNFHVFYELLAGAADDMKLelQLELLSAQEFQYISGGQCYQRnD 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 296 GVNDRADMVETQKTFTLLGFKKDFQMDVFKILAAILHLGNVqvtTVGNERSSVSEDDS---------------------H 354
Cdd:cd14895 238 GVRDDKQFQLVLQSMKVLGFTDVEQAAIWKILSALLHLGNV---LFVASSEDEGEEDNgaasapcrlasaspssltvqqH 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 355 LKVFCELLGLETSKVAQWLCNRKIVTSSETVVKPMTRPQAINARDALAKKIYAHLFDFIVEQINQALhfSGKQHT----- 429
Cdd:cd14895 315 LDIVSKLFAVDQDELVSALTTRKISVGGETFHANLSLAQCGDARDAMARSLYAFLFQFLVSKVNSAS--PQRQFAlnpnk 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 430 --------FIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKLEQEEYMKEDIPWTLIDFYDNQPVIDLIEAK- 500
Cdd:cd14895 393 aankdttpCIAVLDIFGFEEFEVNQFEQFCINYANEKLQYQFIQDILLTEQQAHIEEGIKWNAVDYEDNSVCLEMLEQRp 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 501 MGILELLDEECLLPHGTDENWLQKLYNNFVNkNSLFEKPRMSNS--SFIIQHFADKVEYQCEGFLEKNRDTVYDMLVEIL 578
Cdd:cd14895 473 SGIFSLLDEECVVPKGSDAGFARKLYQRLQE-HSNFSASRTDQAdvAFQIHHYAGAVRYQAEGFCEKNKDQPNAELFSVL 551
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 579 -RASKFHLCAAFfqespvpsSPFGAmiTVKSAKQVIKPNTKHFRTT-----VGNKFRSSLYLLMETLNATTPHYVRCIKP 652
Cdd:cd14895 552 gKTSDAHLRELF--------EFFKA--SESAELSLGQPKLRRRSSVlssvgIGSQFKQQLASLLDVVQQTQTHYIRCIKP 621
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 653 NDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGILMTQQ---ELSLSDKKEVCKVvlhrliqdsN 729
Cdd:cd14895 622 NDESASDQFDMAKVSSQLRYGGVLKAVEIMRQSYPVRMKHADFVKQYRLLVAAKnasDATASALIETLKV---------D 692
|
730
....*....|..
gi 568961004 730 QYQFGRTKIFFR 741
Cdd:cd14895 693 HAELGKTRVFLR 704
|
|
| MYSc_Myo19 |
cd14880 |
class XIX myosin, motor domain; Monomeric myosin-XIX (Myo19) functions as an actin-based motor ... |
83-739 |
4.25e-138 |
|
class XIX myosin, motor domain; Monomeric myosin-XIX (Myo19) functions as an actin-based motor for mitochondrial movement in vertebrate cells. It contains a variable number of IQ domains. Human myo19 contains a motor domain, three IQ motifs, and a short tail. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276846 [Multi-domain] Cd Length: 658 Bit Score: 443.91 E-value: 4.25e-138
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 83 VLHNLRIRFAESkLIYTYSGIILVAMNPYKQLP-IYGDAIIHAY-SGQNMGDMDPHIFAVAEEAYK--QMARNNRNQSII 158
Cdd:cd14880 3 VLRCLQARYTAD-TFYTNAGCTLVALNPFKPVPqLYSPELMREYhAAPQPQKLKPHIFTVGEQTYRnvKSLIEPVNQSIV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 159 VSGESGAGKTVSARYAMRYFATVSKSSSN-------AHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQ 231
Cdd:cd14880 82 VSGESGAGKTWTSRCLMKFYAVVAASPTSweshkiaERIEQRILNSNPVMEAFGNACTLRNNNSSRFGKFIQLQLNRAQQ 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 232 IIGANMRTYLLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYTRMGGNTVIEgvndraDMVE-TQKTF 310
Cdd:cd14880 162 MTGAAVQTYLLEKTRVACQAPSERNFHIFYQICKGASADERLQWHLPEGAAFSWLPNPERNLEE------DCFEvTREAM 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 311 TLLGFKKDFQMDVFKILAAILHLGNVQVTTVGNERSS---VSEDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVV- 386
Cdd:cd14880 236 LHLGIDTPTQNNIFKVLAGLLHLGNIQFADSEDEAQPcqpMDDTKESVRTSALLLKLPEDHLLETLQIRTIRAGKQQQVf 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 387 -KPMTRPQAINARDALAKKIYAHLFDFIVEQINQALHFSGKQHT-FIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFN 464
Cdd:cd14880 316 kKPCSRAECDTRRDCLAKLIYARLFDWLVSVINSSICADTDSWTtFIGLLDVYGFESFPENSLEQLCINYANEKLQQHFV 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 465 LHVFKLEQEEYMKEDIPWTLIDFYDNQPVIDLIEAK-MGILELLDEECLLPHGTDENWLQKLYNNFVNKNSLFEKPRMSN 543
Cdd:cd14880 396 AHYLRAQQEEYAVEGLEWSFINYQDNQTCLDLIEGSpISICSLINEECRLNRPSSAAQLQTRIESALAGNPCLGHNKLSR 475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 544 S-SFIIQHFADKVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFqespvPSSPfgamitVKSAKQVIKPNTKHFRT 622
Cdd:cd14880 476 EpSFIVVHYAGPVRYHTAGLVEKNKDPVPPELTRLLQQSQDPLLQKLF-----PANP------EEKTQEEPSGQSRAPVL 544
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 623 TVGNKFRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGIL 702
Cdd:cd14880 545 TVVSKFKASLEQLLQVLHSTTPHYIRCIKPNSQCQAQTFLQEEVLSQLEACGLVETIHISAAGFPIRVSHQNFVERYKLL 624
|
650 660 670
....*....|....*....|....*....|....*..
gi 568961004 703 MTQQELSLSDKKEVCKVVLHrliqdSNQYQFGRTKIF 739
Cdd:cd14880 625 RRLRPHTSSGPHSPYPAKGL-----SEPVHCGRTKVF 656
|
|
| MYSc_Myh9 |
cd14919 |
class II myosin heavy chain 9, motor domain; Myosin motor domain of non-muscle myosin heavy ... |
82-741 |
1.30e-137 |
|
class II myosin heavy chain 9, motor domain; Myosin motor domain of non-muscle myosin heavy chain 9 (also called NMMHCA, NMHC-II-A, MHA, FTNS, EPSTS, and DFNA17). Myosin is a hexameric protein composed of a pair of myosin heavy chains (MYH) and two pairs of nonidentical light chains. The encoded protein is a myosin IIA heavy chain that contains an IQ domain and a myosin head-like domain which is involved in several important functions, including cytokinesis, cell motility and maintenance of cell shape. Defects in this gene have been associated with non-syndromic sensorineural deafness autosomal dominant type 17, Epstein syndrome, Alport syndrome with macrothrombocytopenia, Sebastian syndrome, Fechtner syndrome and macrothrombocytopenia with progressive sensorineural deafness. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276883 [Multi-domain] Cd Length: 670 Bit Score: 443.38 E-value: 1.30e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 82 AVLHNLRIRFAeSKLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVSG 161
Cdd:cd14919 2 SVLHNLKERYY-SGLIYTYSGLFCVVINPYKNLPIYSEEIVEMYKGKKRHEMPPHIYAITDTAYRSMMQDREDQSILCTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 162 ESGAGKTVSARYAMRYFATVSKS----SSNAHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQIIGANM 237
Cdd:cd14919 81 ESGAGKTENTKKVIQYLAHVASShkskKDQGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVNGYIVGANI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 238 RTYLLEKSRVVFQSENERNYHIFYQLCASAQQsefkHLKLG-SAEEFNYTRM--GGNTVIEGVNDRADMVETQKTFTLLG 314
Cdd:cd14919 161 ETYLLEKSRAIRQAKEERTFHIFYYLLSGAGE----HLKTDlLLEPYNKYRFlsNGHVTIPGQQDKDMFQETMEAMRIMG 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 315 FKKDFQMDVFKILAAILHLGNVQVTTVGNERSSVSEDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVVKPMTRPQA 394
Cdd:cd14919 237 IPEEEQMGLLRVISGVLQLGNIVFKKERNTDQASMPDNTAAQKVSHLLGINVTDFTRGILTPRIKVGRDYVQKAQTKEQA 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 395 INARDALAKKIYAHLFDFIVEQINQALHFSGKQ-HTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKLEQE 473
Cdd:cd14919 317 DFAIEALAKATYERMFRWLVLRINKALDKTKRQgASFIGILDIAGFEIFDLNSFEQLCINYTNEKLQQLFNHTMFILEQE 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 474 EYMKEDIPWTLIDF-YDNQPVIDLIEAKM---GILELLDEECLLPHGTDENWLQKLYNNfVNKNSLFEKPRM--SNSSFI 547
Cdd:cd14919 397 EYQREGIEWNFIDFgLDLQPCIDLIEKPAgppGILALLDEECWFPKATDKSFVEKVVQE-QGTHPKFQKPKQlkDKADFC 475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 548 IQHFADKVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFQE-SPVPSSPFGAMITVKSAKQVIKPNTKHFRtTVGN 626
Cdd:cd14919 476 IIHYAGKVDYKADEWLMKNMDPLNDNIATLLHQSSDKFVSELWKDvDRIIGLDQVAGMSETALPGAFKTRKGMFR-TVGQ 554
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 627 KFRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGILMTQQ 706
Cdd:cd14919 555 LYKEQLAKLMATLRNTNPNFVRCIIPNHEKKAGKLDPHLVLDQLRCNGVLEGIRICRQGFPNRVVFQEFRQRYEILTPNS 634
|
650 660 670
....*....|....*....|....*....|....*.
gi 568961004 707 -ELSLSDKKEVCKVVLHRLIQDSNQYQFGRTKIFFR 741
Cdd:cd14919 635 iPKGFMDGKQACVLMIKALELDSNLYRIGQSKVFFR 670
|
|
| MYSc_Myo41 |
cd14902 |
class XLI myosin, motor domain; The class XLI myosins are comprised of Stramenopiles. Not much ... |
81-741 |
2.81e-136 |
|
class XLI myosin, motor domain; The class XLI myosins are comprised of Stramenopiles. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276867 [Multi-domain] Cd Length: 716 Bit Score: 441.25 E-value: 2.81e-136
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 81 PAVLHNLRIRFaESKLIYTYSGIILVAMNPYKQLP-IYGDAIIHAY--------SGQNMGDMDPHIFAVAEEAYKQMARN 151
Cdd:cd14902 1 AALLQALSERF-EHDQIYTSIGDILVALNPLKPLPdLYSESQLNAYkasmtstsPVSQLSELPPHVFAIGGKAFGGLLKP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 152 NR-NQSIIVSGESGAGKTVSARYAMRYFATVSKSSSNAHVED--------KVLASNPITEAVGNAKTTRNDNSSRFGKYT 222
Cdd:cd14902 80 ERrNQSILVSGESGSGKTESTKFLMQFLTSVGRDQSSTEQEGsdaveigkRILQTNPILESFGNAQTIRNDNSSRFGKFI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 223 EISFDERNQIIGANMRTYLLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEF----NYTRMGGNTVIEGVN 298
Cdd:cd14902 160 KIQFGANNEIVGAQIVSYLLEKVRLLHQSPEERSFHIFYELLEGADKTLLDLLGLQKGGKYellnSYGPSFARKRAVADK 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 299 DRADMVETQKTFTLLGFKKDFQMDVFKILAAILHLGNVQVTTVGNERSSVS---EDDSHLKVFCELLGLETSKVAQWLCN 375
Cdd:cd14902 240 YAQLYVETVRAFEDTGVGELERLDIFKILAALLHLGNVNFTAENGQEDATAvtaASRFHLAKCAELMGVDVDKLETLLSS 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 376 RKIVTSSETVVKPMTRPQAINARDALAKKIYAHLFDFIVEQINQAL-HFSGKQH--------TFIGVLDIYGFETFDVNS 446
Cdd:cd14902 320 REIKAGVEVMVLKLTPEQAKEICGSLAKAIYGRLFTWLVRRLSDEInYFDSAVSisdedeelATIGILDIFGFESLNRNG 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 447 FEQFCINYANEKLQQQFNLHVFKLEQEEYMKEDIPWTLIDFYDNQPVIDLIEAKM-GILELLDEECLLPHGTDENWLQKL 525
Cdd:cd14902 400 FEQLCINYANERLQAQFNEFVFVKEQQIYIAEGIDWKNISYPSNAACLALFDDKSnGLFSLLDQECLMPKGSNQALSTKF 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 526 YNNFVNKNslfekprmsnsSFIIQHFADKVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFQESPVPSSpfgamiT 605
Cdd:cd14902 480 YRYHGGLG-----------QFVVHHFAGRVCYNVEQFVEKNTDALPADASDILSSSSNEVVVAIGADENRDSP------G 542
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 606 VKSAKQVIKPNTKHFRTTVGNKFRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQS 685
Cdd:cd14902 543 ADNGAAGRRRYSMLRAPSVSAQFKSQLDRLIVQIGRTEAHYVRCLKPNEVKKPGIFDRERMVEQMRSVGVLEAVRIARHG 622
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 686 YPSRWTYLEFYSRYGILMTQQELSLSDKK-------------EVCKVVLHRLIQDSNQ---------------------- 730
Cdd:cd14902 623 YSVRLAHASFIELFSGFKCFLSTRDRAAKmnnhdlaqalvtvLMDRVLLEDGVEREEKnpgaltavtgdgsgtafendcr 702
|
730
....*....|....
gi 568961004 731 ---YQFGRTKIFFR 741
Cdd:cd14902 703 rkdVQVGRTLVFCK 716
|
|
| MYSc_Myh19 |
cd15896 |
class II myosin heavy chain19, motor domain; Myosin motor domain of muscle myosin heavy chain ... |
82-741 |
7.54e-136 |
|
class II myosin heavy chain19, motor domain; Myosin motor domain of muscle myosin heavy chain 19. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276899 [Multi-domain] Cd Length: 675 Bit Score: 438.73 E-value: 7.54e-136
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 82 AVLHNLRIRFAeSKLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVSG 161
Cdd:cd15896 2 SVLHNLKERYY-SGLIYTYSGLFCVVINPYKNLPIYSEEIVEMYKGKKRHEMPPHIYAITDTAYRSMMQDREDQSILCTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 162 ESGAGKTVSARYAMRYFATVSKS-----------SSNAHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERN 230
Cdd:cd15896 81 ESGAGKTENTKKVIQYLAHVASShktkkdqnslaLSHGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVNG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 231 QIIGANMRTYLLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLgsaEEFNYTRM--GGNTVIEGVNDRADMVETQK 308
Cdd:cd15896 161 YIVGANIETYLLEKSRAIRQAKEERTFHIFYYLLTGAGDKLRSELLL---ENYNNYRFlsNGNVTIPGQQDKDLFTETME 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 309 TFTLLGFKKDFQMDVFKILAAILHLGNVQVTTVGNERSSVSEDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVVKP 388
Cdd:cd15896 238 AFRIMGIPEDEQIGMLKVVASVLQLGNMSFKKERHTDQASMPDNTAAQKVCHLMGMNVTDFTRAILSPRIKVGRDYVQKA 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 389 MTRPQAINARDALAKKIYAHLFDFIVEQINQALHFSGKQ-HTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHV 467
Cdd:cd15896 318 QTQEQAEFAVEALAKATYERMFRWLVMRINKALDKTKRQgASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTM 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 468 FKLEQEEYMKEDIPWTLIDF-YDNQPVIDLIE---AKMGILELLDEECLLPHGTDENWLQKLYNNFVNKNSLFEKPRMSN 543
Cdd:cd15896 398 FILEQEEYQREGIEWSFIDFgLDLQPCIDLIEkpaSPPGILALLDEECWFPKATDKSFVEKVLQEQGTHPKFFKPKKLKD 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 544 SS-FIIQHFADKVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFQ--ESPVPSSPFGAMITVKSAkqvIKPNTKHF 620
Cdd:cd15896 478 EAdFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLNQSTDKFVSELWKdvDRIVGLDKVSGMSEMPGA---FKTRKGMF 554
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 621 RtTVGNKFRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYG 700
Cdd:cd15896 555 R-TVGQLYKEQLSKLMATLRNTNPNFVRCIIPNHEKKAGKLDPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYE 633
|
650 660 670 680
....*....|....*....|....*....|....*....|..
gi 568961004 701 ILMTQQ-ELSLSDKKEVCKVVLHRLIQDSNQYQFGRTKIFFR 741
Cdd:cd15896 634 ILTPNAiPKGFMDGKQACVLMIKSLELDPNLYRIGQSKVFFR 675
|
|
| MYSc_Myo14 |
cd14876 |
class XIV myosin, motor domain; These myosins localize to plasma membranes of the ... |
81-739 |
1.33e-135 |
|
class XIV myosin, motor domain; These myosins localize to plasma membranes of the intracellular parasites and may be involved in the cell invasion process. Their known functions include: transporting phagosomes to the nucleus and perturbing the developmentally regulated elimination of the macronucleus during conjugation. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. C-terminal to their motor domain these myosins have a MyTH4-FERM protein domain combination. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276843 Cd Length: 649 Bit Score: 436.73 E-value: 1.33e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 81 PAVLHNLRIRFAESKlIYTYSGIILVAMNPYKQLPIYGDAIIHAYSG-QNMGDMDPHIFAVAEEAYKQMARNNRNQSIIV 159
Cdd:cd14876 1 PCVLDFLKHRYLKNQ-IYTTADPLLVAINPFKDLGNATDEWIRKYRDaPDLTKLPPHVFYTARRALENLHGVNKSQTIIV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 160 SGESGAGKTVSARYAMRYFATVSKSSSNAHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQIIGANMRT 239
Cdd:cd14876 80 SGESGAGKTEATKQIMRYFASAKSGNMDLRIQTAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLDVASEGGIRYGSVVA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 240 YLLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYtrMGGNTV-IEGVNDRADMVETQKTFTLLGFKKD 318
Cdd:cd14876 160 FLLEKSRIVTQDDNERSYHIFYQLLKGADSEMKSKYHLLGLKEYKF--LNPKCLdVPGIDDVADFEEVLESLKSMGLTEE 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 319 FQMDVFKILAAILHLGNVQVTT-----VGNERSSVSEDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVVKPMTRPQ 393
Cdd:cd14876 238 QIDTVFSIVSGVLLLGNVKITGkteqgVDDAAAISNESLEVFKEACSLLFLDPEALKRELTVKVTKAGGQEIEGRWTKDD 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 394 AINARDALAKKIYAHLFDFIVEQINQALHFSGKQHTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKLEQE 473
Cdd:cd14876 318 AEMLKLSLAKAMYDKLFLWIIRNLNSTIEPPGGFKNFMGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFIDIVFERESK 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 474 EYMKEDIPWTLIDFYDNQPVID-LIEAKMGILELLDEECLLPHGTDENWLQKLYNNFVNKNSLFEKPRMSNSSFIIQHFA 552
Cdd:cd14876 398 LYKDEGIPTAELEYTSNAEVIDvLCGKGKSVLSILEDQCLAPGGSDEKFVSACVSKLKSNGKFKPAKVDSNINFIVVHTI 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 553 DKVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFQESPVPSSpfgamitvKSAK-QVIkpntkhfrttvGNKFRSS 631
Cdd:cd14876 478 GDIQYNAEGFLFKNKDVLRAELVEVVQASTNPVVKALFEGVVVEKG--------KIAKgSLI-----------GSQFLKQ 538
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 632 LYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGILmtqqELSLS 711
Cdd:cd14876 539 LESLMGLINSTEPHFIRCIKPNETKKPLEWNSSKVLIQLHALSILEALQLRQLGYSYRRPFEEFLYQFKFL----DLGIA 614
|
650 660 670
....*....|....*....|....*....|...
gi 568961004 712 -DKKEVCKVVLHRLIQDSN----QYQFGRTKIF 739
Cdd:cd14876 615 nDKSLDPKVAALKLLESSGlsedEYAIGKTMVF 647
|
|
| MYSc_Myo25 |
cd14886 |
class XXV myosin, motor domain; These myosins are MyTH-FERM myosins that play a role in cell ... |
83-741 |
1.92e-131 |
|
class XXV myosin, motor domain; These myosins are MyTH-FERM myosins that play a role in cell adhesion and filopodia formation. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276851 Cd Length: 650 Bit Score: 425.45 E-value: 1.92e-131
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 83 VLHNLRIRFAESKlIYTYSGIILVAMNPYKQLP-IYGDAIIHAYSGQNMG-----DMDPHIFAVAEEAYKQMARNNRNQS 156
Cdd:cd14886 3 VIDILRDRFAKDK-IYTYAGKLLVALNPFKQIRnLYGTEVIGRYRQADTSrgfpsDLPPHSYAVAQSALNGLISDGISQS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 157 IIVSGESGAGKTVSARYAMRYFATVSKSSSNAhVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQIIGAN 236
Cdd:cd14886 82 CIVSGESGAGKTETAKQLMNFFAYGHSTSSTD-VQSLILGSNPLLESFGNAKTLRNNNSSRFGKFIKLLVGPDGGLKGGK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 237 MRTYLLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYTRMGGNTVIEGVNDRADMVETQKTFTLLGFK 316
Cdd:cd14886 161 ITSYMLELSRIEFQSTNERNYHIFYQCIKGLSPEEKKSLGFKSLESYNFLNASKCYDAPGIDDQKEFAPVRSQLEKLFSK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 317 KDFQmDVFKILAAILHLGNVQ---VTTVGNERSSVSEDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVVKPMTRPQ 393
Cdd:cd14886 241 NEID-SFYKCISGILLAGNIEfseEGDMGVINAAKISNDEDFGKMCELLGIESSKAAQAIITKVVVINNETIISPVTQAQ 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 394 AINARDALAKKIYAHLFDFIVEQINQALHFSGKQHTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKLEQE 473
Cdd:cd14886 320 AEVNIRAVAKDLYGALFELCVDTLNEIIQFDADARPWIGILDIYGFEFFERNTYEQLLINYANERLQQYFINQVFKSEIQ 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 474 EYMKEDIPWTLIDFYDNQPVIDLIEA-KMGILELLDEECLLPHGTDENWLQKLYNNFvnKNSLFEKPRMSNSSFIIQHFA 552
Cdd:cd14886 400 EYEIEGIDHSMITFTDNSNVLAVFDKpNLSIFSFLEEQCLIQTGSSEKFTSSCKSKI--KNNSFIPGKGSQCNFTIVHTA 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 553 DKVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFQESPVPSspfgamitvksakqvikPNTKHfrTTVGNKFRSSL 632
Cdd:cd14886 478 ATVTYNTEEFVDKNKHKLSVDILELLMGSTNPIVNKAFSDIPNED-----------------GNMKG--KFLGSTFQLSI 538
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 633 YLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGILMTQQELSL-- 710
Cdd:cd14886 539 DQLMKTLSATKSHFIRCIKTNQDKVPNKYETKSVYNQLISLSIFESIQTIHRGFAYNDTFEEFFHRNKILISHNSSSQna 618
|
650 660 670
....*....|....*....|....*....|..
gi 568961004 711 -SDKKEVCKVVLHRLIQDSNQYQFGRTKIFFR 741
Cdd:cd14886 619 gEDLVEAVKSILENLGIPCSDYRIGKTKVFLR 650
|
|
| MYSc_Myo45 |
cd14906 |
class XLV myosin, motor domain; The class XLVI myosins are comprised of slime molds ... |
83-734 |
8.67e-131 |
|
class XLV myosin, motor domain; The class XLVI myosins are comprised of slime molds Dictyostelium and Polysphondylium. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276871 [Multi-domain] Cd Length: 715 Bit Score: 425.93 E-value: 8.67e-131
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 83 VLHNLRIRFaESKLIYTYSGIILVAMNPYKQLP-IYGDAIIHAYSGQN-MGDMDPHIFAVAEEAYKQMARNNRNQSIIVS 160
Cdd:cd14906 3 ILNNLGKRY-KSDSIYTYIGNVLISINPYKDISsIYSNLILNEYKDINqNKSPIPHIYAVALRAYQSMVSEKKNQSIIIS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 161 GESGAGKTVSARYAMRYFATVSKSSS---------NAHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQ 231
Cdd:cd14906 82 GESGSGKTEASKTILQYLINTSSSNQqqnnnnnnnNNSIEKDILTSNPILEAFGNSRTTKNHNSSRFGKFLKIEFRSSDG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 232 II-GANMRTYLLEKSRVVFQSENER-NYHIFYQLCASAQQSEFKHLKLGS-AEEFNY-------------TRMGGNTVIE 295
Cdd:cd14906 162 KIdGASIETYLLEKSRISHRPDNINlSYHIFYYLVYGASKDERSKWGLNNdPSKYRYldarddvissfksQSSNKNSNHN 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 296 GVNDRADMVETQKTFTL-LGFKKDFQMDVFKILAAILHLGNVQVTTVGNERSSVSEDDSHLKVF---CELLGLETSKVAQ 371
Cdd:cd14906 242 NKTESIESFQLLKQSMEsMSINKEQCDAIFLSLAAILHLGNIEFEEDSDFSKYAYQKDKVTASLesvSKLLGYIESVFKQ 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 372 WLCNRKIVTSSETVV--KPMTRPQAINARDALAKKIYAHLFDFIVEQINQ-----------ALHFSGKQHTFIGVLDIYG 438
Cdd:cd14906 322 ALLNRNLKAGGRGSVycRPMEVAQSEQTRDALSKSLYVRLFKYIVEKINRkfnqntqsndlAGGSNKKNNLFIGVLDIFG 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 439 FETFDVNSFEQFCINYANEKLQQQFNLHVFKLEQEEYMKEDIPWTLIDFYDNQPVIDLIEAK-MGILELLDEECLLPHGT 517
Cdd:cd14906 402 FENLSSNSLEQLLINFTNEKLQQQFNLNVFENEQKEYLSEGIPWSNSNFIDNKECIELIEKKsDGILSLLDDECIMPKGS 481
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 518 DENWLQKLYNNFVNKNSLFEKPrMSNSSFIIQHFADKVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFQEspvps 597
Cdd:cd14906 482 EQSLLEKYNKQYHNTNQYYQRT-LAKGTLGIKHFAGDVTYQTDGWLEKNRDSLYSDVEDLLLASSNFLKKSLFQQ----- 555
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 598 spfgamitvksaKQVIKPNTKHFRT---TVGNKFRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACG 674
Cdd:cd14906 556 ------------QITSTTNTTKKQTqsnTVSGQFLEQLNQLIQTINSTSVHYIRCIKPNQTMDCNNFNNVHVLSQLRNVG 623
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 675 VLETIRISAQSYPSRWTYLEFYSRYGILMTQQELSlSDKKEVCKVVLHRLIQDSNQYQFG 734
Cdd:cd14906 624 VLNTIKVRKMGYSYRRDFNQFFSRYKCIVDMYNRK-NNNNPKLASQLILQNIQSKLKTMG 682
|
|
| MYSc_Myo39 |
cd14900 |
class XXXIX myosin, motor domain; The class XXXIX myosins are found in Stramenopiles. Not much ... |
83-702 |
1.20e-128 |
|
class XXXIX myosin, motor domain; The class XXXIX myosins are found in Stramenopiles. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276865 Cd Length: 627 Bit Score: 417.01 E-value: 1.20e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 83 VLHNLRIRFAESKlIYTYSGIILVAMNPYKQLP-IYGDAIIHAY---------SGQNMGD--MDPHIFAVAEEAYKQMAR 150
Cdd:cd14900 3 ILSALETRFYAQK-IYTNTGAILLAVNPFQKLPgLYSSDTMAKYllsfearssSTRNKGSdpMPPHIYQVAGEAYKAMML 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 151 --NNR--NQSIIVSGESGAGKTVSARYAMRYFA---------TVSKSSSNAHVEDKVLASNPITEAVGNAKTTRNDNSSR 217
Cdd:cd14900 82 glNGVmsDQSILVSGESGSGKTESTKFLMEYLAqagdnnlaaSVSMGKSTSGIAAKVLQTNILLESFGNARTLRNDNSSR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 218 FGKYTEISFDERNQIIGANMRTYLLEKSRVVFQSENERNYHIFYQLCASAQQSEFKhlklgsaeEFNYTRMggntviegv 297
Cdd:cd14900 162 FGKFIKLHFTSGGRLTGASIQTYLLEKVRLVSQSKGERNYHIFYEMAIGASEAARK--------RDMYRRV--------- 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 298 NDRADMVetqktftllGFKKDFQMDVFKILAAILHLGNV--QVTTVGNERSSvseDDSHLKVFCE--------LLGLETS 367
Cdd:cd14900 225 MDAMDII---------GFTPHERAGIFDLLAALLHIGNLtfEHDENSDRLGQ---LKSDLAPSSIwsrdaaatLLSVDAT 292
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 368 KVAQWLCNRKIVTSSETVVKPMTRPQAINARDALAKKIYAHLFDFIVEQINQALHF--SGKQHT---FIGVLDIYGFETF 442
Cdd:cd14900 293 KLEKALSVRRIRAGTDFVSMKLSAAQANNARDALAKALYGRLFDWLVGKMNAFLKMddSSKSHGglhFIGILDIFGFEVF 372
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 443 DVNSFEQFCINYANEKLQQQFNLHVFKLEQEEYMKEDIPWTLIDFYDNQPVIDLIEAK-MGILELLDEECLLPHGTDENW 521
Cdd:cd14900 373 PKNSFEQLCINFANETLQQQFNDYVFKAEQREYESQGVDWKYVEFCDNQDCVNLISQRpTGILSLIDEECVMPKGSDTTL 452
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 522 LQKLYNNFVNkNSLFEKPRMSNSS--FIIQHFADKVEYQCEGFLEKNRDTVYDMLVEILRAskfhlcaaffqespvpssp 599
Cdd:cd14900 453 ASKLYRACGS-HPRFSASRIQRARglFTIVHYAGHVEYSTDGFLEKNKDVLHQEAVDLFVY------------------- 512
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 600 fgamitvksakqvikpntkhfrttvGNKFRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETI 679
Cdd:cd14900 513 -------------------------GLQFKEQLTTLLETLQQTNPHYVRCLKPNDLCKAGIYERERVLNQLRCNGVMEAV 567
|
650 660
....*....|....*....|...
gi 568961004 680 RISAQSYPSRWTYLEFYSRYGIL 702
Cdd:cd14900 568 RVARAGFPIRLLHDEFVARYFSL 590
|
|
| MYSc_Myo35 |
cd14896 |
class XXXV myosin, motor domain; This class of metazoan myosins contains 2 IQ motifs, 2 MyTH4 ... |
81-741 |
3.49e-127 |
|
class XXXV myosin, motor domain; This class of metazoan myosins contains 2 IQ motifs, 2 MyTH4 domains, a single FERM domain, and an SH3 domain. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276861 [Multi-domain] Cd Length: 644 Bit Score: 413.41 E-value: 3.49e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 81 PAVLHNLRIRFaESKLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVS 160
Cdd:cd14896 1 SSVLLCLKKRF-HLGRIYTFGGPILLSLNPHRSLPLFSEEVLASYHPRKALNTTPHIFAIAASAYRLSQSTGQDQCILLS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 161 GESGAGKTVSARYAMRYFATVSKSSSNAHVE--DKVLasnPITEAVGNAKTTRNDNSSRFGKYTEISFdERNQIIGANMR 238
Cdd:cd14896 80 GHSGSGKTEAAKKIVQFLSSLYQDQTEDRLRqpEDVL---PILESFGHAKTILNANASRFGQVLRLHL-QHGVIVGASVS 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 239 TYLLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYTRMGGNTVIEGVNDRADMVETQKTFTLLGFKKD 318
Cdd:cd14896 156 HYLLETSRVVFQAQAERSFHVFYELLAGLDPEEREQLSLQGPETYYYLNQGGACRLQGKEDAQDFEGLLKALQGLGLCAE 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 319 FQMDVFKILAAILHLGNVQVTTVGNERSSVSE--DDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVVKPMTRPQAIN 396
Cdd:cd14896 236 ELTAIWAVLAAILQLGNICFSSSERESQEVAAvsSWAEIHTAARLLQVPPERLEGAVTHRVTETPYGRVSRPLPVEGAID 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 397 ARDALAKKIYAHLFDFIVEQINQALHFSGKQHTF--IGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKLEQEE 474
Cdd:cd14896 316 ARDALAKTLYSRLFTWLLKRINAWLAPPGEAESDatIGVVDAYGFEALRVNGLEQLCINLASERLQLFSSQTLLAQEEEE 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 475 YMKEDIPWTLIDFYDNQPVIDLIEAK-MGILELLDEECLLPHGTDENWLQKLYNNFVNkNSLFEKPRMSNSSFIIQHFAD 553
Cdd:cd14896 396 CQRELLPWVPIPQPPRESCLDLLVDQpHSLLSILDDQTWLSQATDHTFLQKCHYHHGD-HPSYAKPQLPLPVFTVRHYAG 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 554 KVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFQESpvpsspfgamitvkSAKQVIKPNtkhfRTTVGNKFRSSLY 633
Cdd:cd14896 475 TVTYQVHKFLNRNRDQLDPAVVEMLAQSQLQLVGSLFQEA--------------EPQYGLGQG----KPTLASRFQQSLG 536
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 634 LLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGILMTQQELSLSDK 713
Cdd:cd14896 537 DLTARLGRSHVYFIHCLNPNPGKLPGLFDVGHVTEQLRQAGILEAIGTRSEGFPVRVPFQAFLARFGALGSERQEALSDR 616
|
650 660
....*....|....*....|....*...
gi 568961004 714 KEVCKVVLHRLIQDSNQYQFGRTKIFFR 741
Cdd:cd14896 617 ERCGAILSQVLGAESPLYHLGATKVLLK 644
|
|
| MYSc_Myo38 |
cd14899 |
class XXXVIII myosin; The class XXXVIII myosins are comprised of Stramenopiles. Not much is ... |
82-699 |
4.44e-115 |
|
class XXXVIII myosin; The class XXXVIII myosins are comprised of Stramenopiles. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276864 [Multi-domain] Cd Length: 717 Bit Score: 382.14 E-value: 4.44e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 82 AVLHNLRIRFaESKLIYTYSGIILVAMNPYKQLP-IYGDAIIHAYS---GQNMGDM-------DPHIFAVAEEAYKQMAR 150
Cdd:cd14899 2 SILNALRLRY-ERHAIYTHIGDILISINPFQDLPqLYGDEILRGYAydhNSQFGDRvtstdprEPHLFAVARAAYIDIVQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 151 NNRNQSIIVSGESGAGKTVSARYAMRYFATVS----------------KSSSNAHVEDKVLASNPITEAVGNAKTTRNDN 214
Cdd:cd14899 81 NGRSQSILISGESGAGKTEATKIIMTYFAVHCgtgnnnltnsesisppASPSRTTIEEQVLQSNPILEAFGNARTVRNDN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 215 SSRFGKYTEISF-DERNQIIGANMRTYLLEKSRVVFQSENERNYHIFYQL------CASAQQSEFKHLKLGSAEEFNYTR 287
Cdd:cd14899 161 SSRFGKFIELRFrDERRRLAGARIRTYLLEKIRVIKQAPHERNFHIFYELlsadnnCVSKEQKQVLALSGGPQSFRLLNQ 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 288 MGGNTVIEGVNDRADMVETQKTFTLLGFKKDFQMDVFKILAAILHLGNVQVTTVGNER------------SSVSEDDSHL 355
Cdd:cd14899 241 SLCSKRRDGVKDGVQFRATKRAMQQLGMSEGEIGGVLEIVAAVLHMGNVDFEQIPHKGddtvfadearvmSSTTGAFDHF 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 356 KVFCELLGLETSKVAQWLCNRKIVTSSETVVKPMTRPQAINARDALAKKIYAHLFDFIVEQINQALHFSGK--------- 426
Cdd:cd14899 321 TKAAELLGVSTEALDHALTKRWLHASNETLVVGVDVAHARNTRNALTMECYRLLFEWLVARVNNKLQRQASapwgadesd 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 427 ------QHTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKLEQEEYMKEDIPWTLIDFYDNQPVIDLIEAK 500
Cdd:cd14899 401 vddeedATDFIGLLDIFGFEDMAENSFEQLCINYANEALQHQFNQYIFEEEQRLYRDEGIRWSFVDFPNNRACLELFEHR 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 501 -MGILELLDEECLLPHGTDENWLQKLYNNFVNKNslfEKPRMSNSS-------FIIQHFADKVEYQCEGFLEKNRDTVYD 572
Cdd:cd14899 481 pIGIFSLTDQECVFPQGTDRALVAKYYLEFEKKN---SHPHFRSAPliqrttqFVVAHYAGCVTYTIDGFLAKNKDSFCE 557
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 573 MLVEILRASKFHLCAAFFQESPVPSSPFGAMITVKSAKQVIKPNTKHFRTTVGNKFRSSLYLLMETLNATTPHYVRCIKP 652
Cdd:cd14899 558 SAAQLLAGSSNPLIQALAAGSNDEDANGDSELDGFGGRTRRRAKSAIAAVSVGTQFKIQLNELLSTVRATTPRYVRCIKP 637
|
650 660 670 680
....*....|....*....|....*....|....*....|....*..
gi 568961004 653 NDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRY 699
Cdd:cd14899 638 NDSHVGSLFQSTRVVEQLRSGGVLEAVRVARAGFPVRLTHKQFLGRY 684
|
|
| MYSc_Myo13 |
cd14875 |
class XIII myosin, motor domain; These myosins have an N-terminal motor domain, a light-chain ... |
83-741 |
7.32e-111 |
|
class XIII myosin, motor domain; These myosins have an N-terminal motor domain, a light-chain binding domain, and a C-terminal GPA/Q-rich domain. There is little known about the function of this myosin class. Two of the earliest members identified in this class are green alga Acetabularia cliftonii, Aclmyo1 and Aclmyo2. They are striking with their short tail of Aclmyo1 of 18 residues and the maximum of 7 IQ motifs in Aclmyo2. It is thought that these myosins are involved in organelle transport and tip growth. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276842 [Multi-domain] Cd Length: 664 Bit Score: 368.37 E-value: 7.32e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 83 VLHNLRIRFAESKLIYTYSGIILVAMNPYKQLPIYGDAIIHAY-SGQNMGDMDPHIFAVAEEAYKQM-ARNNRNQSIIVS 160
Cdd:cd14875 3 LLHCIKERFEKLHQQYSLMGEMVLSVNPFRLMPFNSEEERKKYlALPDPRLLPPHIWQVAHKAFNAIfVQGLGNQSVVIS 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 161 GESGAGKTVSARYAMRYFATVS----KSSSNAHVEDKVLA----SNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQI 232
Cdd:cd14875 83 GESGSGKTENAKMLIAYLGQLSymhsSNTSQRSIADKIDEnlkwSNPVMESFGNARTVRNDNSSRFGKYIKLYFDPTSGV 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 233 -IGANMRTYLLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHL-KLGSAEEFNYTRmGGNTVI------EGVNDRADMV 304
Cdd:cd14875 163 mVGGQTVTYLLEKSRIIMQSPGERNYHIFYEMLAGLSPEEKKELgGLKTAQDYKCLN-GGNTFVrrgvdgKTLDDAHEFQ 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 305 ETQKTFTLLGFKKDFQMDVFKILAAILHLGNVQVTTVGNERSSVsEDDSHLKVFCELLGLETSKVAQWLcnrkIVTSSET 384
Cdd:cd14875 242 NVRHALSMIGVELETQNSIFRVLASILHLMEVEFESDQNDKAQI-ADETPFLTACRLLQLDPAKLRECF----LVKSKTS 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 385 VVKPMTRPQ-AINARDALAKKIYAHLFDFIVEQINQALHFSG--KQHTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQ 461
Cdd:cd14875 317 LVTILANKTeAEGFRNAFCKAIYVGLFDRLVEFVNASITPQGdcSGCKYIGLLDIFGFENFTRNSFEQLCINYANESLQN 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 462 QFNLHVFKLEQEEYMKEDIPWTLIDFYDNQPVIDLIEAK-MGILELLDEECLLPHGTDENWLQKLYNNFVNKNSLFEKPR 540
Cdd:cd14875 397 HYNKYTFINDEEECRREGIQIPKIEFPDNSECVNMFDQKrTGIFSMLDEECNFKGGTTERFTTNLWDQWANKSPYFVLPK 476
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 541 MS-NSSFIIQHFADKVEYQCEGFLEKNRDTVYDMLVEILRASkfhlcAAFFQESPVPSSPFGAmitvksakqvikpntkH 619
Cdd:cd14875 477 STiPNQFGVNHYAAFVNYNTDEWLEKNTDALKEDMYECVSNS-----TDEFIRTLLSTEKGLA----------------R 535
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 620 FRTTVGNKFRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRY 699
Cdd:cd14875 536 RKQTVAIRFQRQLTDLRTELESTETQFIRCIKPNMEASPSFLDNLLVGSQLESAGVLQTIALKRQGYPVRRPIEQFCRYF 615
|
650 660 670 680
....*....|....*....|....*....|....*....|....*....
gi 568961004 700 GILMTQQELSL---SDKKEVCKVVLHRLIQ----DSNQYQFGRTKIFFR 741
Cdd:cd14875 616 YLIMPRSTASLfkqEKYSEAAKDFLAYYQRlygwAKPNYAVGKTKVFLR 664
|
|
| MYSc_Myo17 |
cd14879 |
class XVII myosin, motor domain; This fungal myosin which is also known as chitin synthase ... |
82-740 |
2.08e-110 |
|
class XVII myosin, motor domain; This fungal myosin which is also known as chitin synthase uses its motor domain to tether its vesicular cargo to peripheral actin. It works in opposition to dynein, contributing to the retention of Mcs1 vesicles at the site of cell growth and increasing vesicle fusion necessary for polarized growth. Class 17 myosins consist of a N-terminal myosin motor domain with Cyt-b5, chitin synthase 2, and a DEK_C domains at it C-terminus. The chitin synthase region contains several transmembrane domains by which myosin 17 is thought to bind secretory vesicles. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276845 [Multi-domain] Cd Length: 647 Bit Score: 366.49 E-value: 2.08e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 82 AVLHNLRIRFAESkLIYTY-SGIILVAMNPYKQLPIYGDAIIHAY-------SGQNMGDMDPHIFAVAEEAYKQMARNNR 153
Cdd:cd14879 5 AITSHLASRFRSD-LPYTRlGSSALVAVNPYKYLSSNSDASLGEYgseyydtTSGSKEPLPPHAYDLAARAYLRMRRRSE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 154 NQSIIVSGESGAGKTVSARYAMRYFATVSKSSSNAH-VEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQI 232
Cdd:cd14879 84 DQAVVFLGETGSGKSESRRLLLRQLLRLSSHSKKGTkLSSQISAAEFVLDSFGNAKTLTNPNASRFGRYTELQFNERGRL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 233 IGANMRTYLLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYT-RMGGNTVIEGV--NDRADMVETQKT 309
Cdd:cd14879 164 IGAKVLDYRLERSRVASVPTGERNFHVFYYLLAGASPEERQHLGLDDPSDYALLaSYGCHPLPLGPgsDDAEGFQELKTA 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 310 FTLLGFKKDFQMDVFKILAAILHLGNVQVTT--VGNERSSVSEDDSHLKVFCELLGLETSKVAQWLCNR-KIVtSSEtVV 386
Cdd:cd14879 244 LKTLGFKRKHVAQICQLLAAILHLGNLEFTYdhEGGEESAVVKNTDVLDIVAAFLGVSPEDLETSLTYKtKLV-RKE-LC 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 387 KPMTRP-QAINARDALAKKIYAHLFDFIVEQINQALHFSGKQ-HTFIGVLDIYGFETFD---VNSFEQFCINYANEKLQQ 461
Cdd:cd14879 322 TVFLDPeGAAAQRDELARTLYSLLFAWVVETINQKLCAPEDDfATFISLLDFPGFQNRSstgGNSLDQFCVNFANERLHN 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 462 QFNLHVFKLEQEEYMKEDIPWTLIDFYDNQPVIDLIEAKMG--ILELLDEECLLPHGTDENWLQKLYNNFVNKNSLFEKP 539
Cdd:cd14879 402 YVLRSFFERKAEELEAEGVSVPATSYFDNSDCVRLLRGKPGglLGILDDQTRRMPKKTDEQMLEALRKRFGNHSSFIAVG 481
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 540 RMS----NSSFIIQHFADKVEYQCEGFLEKNRDtvydmlveilraskfHLCAAFfqespvpsspfgaMITVKSAKQvikp 615
Cdd:cd14879 482 NFAtrsgSASFTVNHYAGEVTYSVEGFLERNGD---------------VLSPDF-------------VNLLRGATQ---- 529
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 616 ntkhfrttvgnkFRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEF 695
Cdd:cd14879 530 ------------LNAALSELLDTLDRTRLWSVFCIRPNDSQLPNSFDKRRVKAQIRSLGLPELAARLRVEYVVSLEHAEF 597
|
650 660 670 680
....*....|....*....|....*....|....*....|....*
gi 568961004 696 YSRYGILMTQQELSLSDKKevckvVLHRLIQDSNQYQFGRTKIFF 740
Cdd:cd14879 598 CERYKSTLRGSAAERIRQC-----ARANGWWEGRDYVLGNTKVFL 637
|
|
| MYSc_Myo37 |
cd14898 |
class XXXVII myosin, motor domain; The class XXXVIII myosins are comprised of fungi. Not much ... |
82-702 |
6.18e-107 |
|
class XXXVII myosin, motor domain; The class XXXVIII myosins are comprised of fungi. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276863 Cd Length: 578 Bit Score: 354.20 E-value: 6.18e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 82 AVLHNLRIRFAESKlIYTYSGIILVAMNPYKQlpIYGDAIIHAYSgQNMGDMDPHIFAVAEEAYKQMARNNrNQSIIVSG 161
Cdd:cd14898 2 ATLEILEKRYASGK-IYTKSGLVFLALNPYET--IYGAGAMKAYL-KNYSHVEPHVYDVAEASVQDLLVHG-NQTIVISG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 162 ESGAGKTVSARYAMRYFatVSKSSSNAHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDerNQIIGANMRTYL 241
Cdd:cd14898 77 ESGSGKTENAKLVIKYL--VERTASTTSIEKLITAANLILEAFGNAKTQLNDNSSRFGKRIKLKFD--GKITGAKFETYL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 242 LEKSRVVFQSENERNYHIFYQLCASAqqsefkhlKLGSAEEFNYTRMGGNTVIEGVNDRADMVETQKTFTLLGFKKdFQm 321
Cdd:cd14898 153 LEKSRVTHHEKGERNFHIFYQFCASK--------RLNIKNDFIDTSSTAGNKESIVQLSEKYKMTCSAMKSLGIAN-FK- 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 322 DVFKILAAILHLGNVQVTtvgNERSSVSEDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVVKPMTRPQAINARDAL 401
Cdd:cd14898 223 SIEDCLLGILYLGSIQFV---NDGILKLQRNESFTEFCKLHNIQEEDFEESLVKFSIQVKGETIEVFNTLKQARTIRNSM 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 402 AKKIYAHLFDFIVEQINQALHFSGKQHtfIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKLEQEEYMKEDIP 481
Cdd:cd14898 300 ARLLYSNVFNYITASINNCLEGSGERS--ISVLDIFGFEIFESNGLDQLCINWTNEKIQNDFIKKMFRAKQGMYKEEGIE 377
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 482 WTLIDFYDNQPVIDLIEAKMGILELLDEECLLPHGTDENWLQKL--YNN-FVNKNslfekprmSNSSFIIQHFADKVEYQ 558
Cdd:cd14898 378 WPDVEFFDNNQCIRDFEKPCGLMDLISEESFNAWGNVKNLLVKIkkYLNgFINTK--------ARDKIKVSHYAGDVEYD 449
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 559 CEGFLEKNRDtvydmlveilrasKFHLcaaffqespvpsSPFGAMITvksakqvikpNTKHFRTTVGNKFRSSLYLLMET 638
Cdd:cd14898 450 LRDFLDKNRE-------------KGQL------------LIFKNLLI----------NDEGSKEDLVKYFKDSMNKLLNS 494
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568961004 639 LNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGIL 702
Cdd:cd14898 495 INETQAKYIKCIRPNEECRPWCFDRDLVSKQLAECGILETIRLSKQCFPQEIPKDRFEERYRIL 558
|
|
| MYSc_Myo26 |
cd14887 |
class XXVI myosin, motor domain; These MyTH-FERM myosins are thought to be related to the ... |
81-741 |
2.29e-100 |
|
class XXVI myosin, motor domain; These MyTH-FERM myosins are thought to be related to the other myosins that have a MyTH4 domain such as class III, VII, IX, X , XV, XVI, XVII, XX, XXII, XXV, and XXXIV. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276852 Cd Length: 725 Bit Score: 340.47 E-value: 2.29e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 81 PAVLHNLRIRFAES-------KLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNR 153
Cdd:cd14887 1 PNLLENLYQRYNKAyinkenrNCIYTYTGTLLIAVNPYRFFNLYDRQWISRFDTEANSRLVPHPFGLAEFAYCRLVRDRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 154 NQSIIVSGESGAGKTVSARYAMRYFATVS---KSSSNAHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERN 230
Cdd:cd14887 81 SQSILISGESGAGKTETSKHVLTYLAAVSdrrHGADSQGLEARLLQSGPVLEAFGNAHTVLNANSSRFGKMLLLHFTGRG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 231 QIIGANMRTYLLEKSRVVFQSENERNYHIFYQLCASAQQSefKHLKLGSAEEFNYTrmggntviegvndrADMVETQKTF 310
Cdd:cd14887 161 KLTRASVATYLLANERVVRIPSDEFSFHIFYALCNAAVAA--ATQKSSAGEGDPES--------------TDLRRITAAM 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 311 TLLGFKKDFQMDVFKILAAILHLGNVQVTTVGNERSSVSEDDSHLKVFCELLGLETSKVAQWLC---NRKIVTSSETVVK 387
Cdd:cd14887 225 KTVGIGGGEQADIFKLLAAILHLGNVEFTTDQEPETSKKRKLTSVSVGCEETAADRSHSSEVKClssGLKVTEASRKHLK 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 388 PMTRP--------------------------------QAINARDALAKKIYAHLFDFIVEQINQALHFSGK--------- 426
Cdd:cd14887 305 TVARLlglppgvegeemlrlalvsrsvretrsffdldGAAAARDAACKNLYSRAFDAVVARINAGLQRSAKpsesdsded 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 427 -----QHTFIGVLDIYGFETF---DVNSFEQFCINYANEKlqqqfnLHVFKLEQ----EE--YMKEDIPWTLIDFYDNQP 492
Cdd:cd14887 385 tpsttGTQTIGILDLFGFEDLrnhSKNRLEQLCINYANER------LHCFLLEQlilnEHmlYTQEGVFQNQDCSAFPFS 458
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 493 -------------VIDLI-EAKMGILELLDEECLLPH----------GTDENW------------LQKLYNNFVNKNSLF 536
Cdd:cd14887 459 fplastltsspssTSPFSpTPSFRSSSAFATSPSLPSslsslssslsSSPPVWegrdnsdlfyekLNKNIINSAKYKNIT 538
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 537 EKPRMSNSSFIIQHFADKVEYQCEGFLEKNRDTVYDMLVEILRAskfhlCAAFFQESPVPSSPFGAMITVKsakqvikpn 616
Cdd:cd14887 539 PALSRENLEFTVSHFACDVTYDARDFCRANREATSDELERLFLA-----CSTYTRLVGSKKNSGVRAISSR--------- 604
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 617 tkhfRTTVGNKFRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFY 696
Cdd:cd14887 605 ----RSTLSAQFASQLQQVLKALQETSCHFIRCVKPNRVQEAGIFEDAYVHRQLRCSGMSDLLRVMADGFPCRLPYVELW 680
|
730 740 750 760
....*....|....*....|....*....|....*....|....*
gi 568961004 697 SRYGILMTQQELSLSDKKEVCKVVLHRLIQDSNQYQFGRTKIFFR 741
Cdd:cd14887 681 RRYETKLPMALREALTPKMFCKIVLMFLEINSNSYTFGKTKIFFR 725
|
|
| MYSc_Myo24A |
cd14937 |
class XXIV A myosin, motor domain; These myosins have a 1-2 IQ motifs in their neck and a ... |
83-741 |
2.16e-95 |
|
class XXIV A myosin, motor domain; These myosins have a 1-2 IQ motifs in their neck and a coiled-coil region in their C-terminal tail. The function of the class XXIV myosins remain elusive. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276897 Cd Length: 637 Bit Score: 323.12 E-value: 2.16e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 83 VLHNLRIRFaESKLIYTYSGIILVAMNPYKQLpiygDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVSGE 162
Cdd:cd14937 3 VLNMLALRY-KKNYIYTIAEPMLISINPYQVI----DVDINEYKNKNTNELPPHVYSYAKDAMTDFINTKTNQSIIISGE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 163 SGAGKTVSARYAMRYFatVSKSSSNAHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQIIGANMRTYLL 242
Cdd:cd14937 78 SGSGKTEASKLVIKYY--LSGVKEDNEISNTLWDSNFILEAFGNAKTLKNNNSSRYGKYIKIELDEYQNIVSSSIEIFLL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 243 EKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYTrMGGNTVIEGVNDRADMVETQKTFTLLGFKkDFQMD 322
Cdd:cd14937 156 ENIRVVSQEEEERGYHIFYQIFNGMSQELKNKYKIRSENEYKYI-VNKNVVIPEIDDAKDFGNLMISFDKMNMH-DMKDD 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 323 VFKILAAILHLGNVQVTTV-GNERSSVSE-DDSHLKVFCE---LLGLETSKVAQWLCNRKIVTSSETVVKPMTRPQAINA 397
Cdd:cd14937 234 LFLTLSGLLLLGNVEYQEIeKGGKTNCSElDKNNLELVNEisnLLGINYENLKDCLVFTEKTIANQKIEIPLSVEESVSI 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 398 RDALAKKIYAHLFDFIVEQINQALHFSGKQHTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKLEQEEYMK 477
Cdd:cd14937 314 CKSISKDLYNKIFSYITKRINNFLNNNKELNNYIGILDIFGFEIFSKNSLEQLLINIANEEIHSIYLYIVYEKETELYKA 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 478 EDIPWTLIDFYDNQPVIDLIEAKMGILELLDEECLLPHGTDENWLQKLYNNFVNKNSLFEKPRMSNSSFIIQHFADKVEY 557
Cdd:cd14937 394 EDILIESVKYTTNESIIDLLRGKTSIISILEDSCLGPVKNDESIVSVYTNKFSKHEKYASTKKDINKNFVIKHTVSDVTY 473
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 558 QCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFQESPVPSSpfgamitvksakqVIKPNTKHFrttvgnKFRSSLYLLME 637
Cdd:cd14937 474 TITNFISKNKDILPSNIVRLLKVSNNKLVRSLYEDVEVSES-------------LGRKNLITF------KYLKNLNNIIS 534
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 638 TLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAqSYPSRWTYLEFYSRYGIL--MTQQELSLSDKKE 715
Cdd:cd14937 535 YLKSTNIYFIKCIKPNENKEKNNFNQKKVFPQLFSLSIIETLNISF-FFQYKYTFDVFLSYFEYLdySTSKDSSLTDKEK 613
|
650 660
....*....|....*....|....*.
gi 568961004 716 VCKVVLHRLiqDSNQYQFGRTKIFFR 741
Cdd:cd14937 614 VSMILQNTV--DPDLYKVGKTMVFLK 637
|
|
| MYSc_Myo16 |
cd14878 |
class XVI myosin, motor domain; These XVI type myosins are also known as Neuronal ... |
82-741 |
3.39e-93 |
|
class XVI myosin, motor domain; These XVI type myosins are also known as Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter 3/NYAP3. Myo16 is thought to play a regulatory role in cell cycle progression and has been recently implicated in Schizophrenia. Class XVI myosins are characterized by an N-terminal ankyrin repeat domain and some with chitin synthase domains that arose independently from the ones in the class XVII fungal myosins. They bind protein phosphatase 1 catalytic subunits 1alpha/PPP1CA and 1gamma/PPP1CC. Human Myo16 interacts with ACOT9, ARHGAP26 and PIK3R2 and with components of the WAVE1 complex, CYFIP1 and NCKAP1. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276844 [Multi-domain] Cd Length: 656 Bit Score: 317.14 E-value: 3.39e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 82 AVLHNLRIRFAESKlIYTYSGIILVAMNPYKQLPIYGDAIIHAY---SGQNMGDMDPHIFAVAEEAYKQMARNNRNQSII 158
Cdd:cd14878 2 SLLYEIQKRFGNNQ-IYTFIGDILLLVNPYKELPIYSTMVSQLYlssSGQLCSSLPPHLFSCAERAFHQLFQERRPQCFI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 159 VSGESGAGKTVSARYAMRYFATVSKSSSNAhVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISF-DERNQIIGANM 237
Cdd:cd14878 81 LSGERGSGKTEASKQIMKHLTCRASSSRTT-FDSRFKHVNCILEAFGHAKTTLNDLSSCFIKYFELQFcERKKHLTGARI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 238 RTYLLEKSRVVFQSENERNYHIFYQLC--ASAQQSEFKHLKLGSAEEF-NYTRMGGNTVIEGVNDRADMVETQKTFTLLG 314
Cdd:cd14878 160 YTYMLEKSRLVSQPPGQSNFLIFYLLMdgLSAEEKYGLHLNNLCAHRYlNQTMREDVSTAERSLNREKLAVLKQALNVVG 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 315 FKKDFQMDVFKILAAILHLGNVQVTTVGNERSSVSEDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVVKPMTRPQA 394
Cdd:cd14878 240 FSSLEVENLFVILSAILHLGDIRFTALTEADSAFVSDLQLLEQVAGMLQVSTDELASALTTDIQYFKGDMIIRRHTIQIA 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 395 INARDALAKKIYAHLFDFIVEQINQALH----FSGKQHTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKL 470
Cdd:cd14878 320 EFYRDLLAKSLYSRLFSFLVNTVNCCLQsqdeQKSMQTLDIGILDIFGFEEFQKNEFEQLCVNMTNEKMHHYINEVLFLQ 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 471 EQEEYMKEDIPWTLIDFYDNQP-VIDLIEAK-MGILELLDEECLLPHGTDENWLQKL--YNNFVNKNSLFEK-------- 538
Cdd:cd14878 400 EQTECVQEGVTMETAYSPGNQTgVLDFFFQKpSGFLSLLDEESQMIWSVEPNLPKKLqsLLESSNTNAVYSPmkdgngnv 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 539 -PRMSNSSFIIQHFADKVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFQESpvpsspfgamitvksakqvikpnt 617
Cdd:cd14878 480 aLKDQGTAFTVMHYAGRVMYEIVGAIEKNKDSLSQNLLFVMKTSENVVINHLFQSK------------------------ 535
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 618 khfRTTVGNKFRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYS 697
Cdd:cd14878 536 ---LVTIASQLRKSLADIIGKLQKCTPHFIHCIKPNNSKLPDTFDNFYVSAQLQYIGVLEMVKIFRYGYPVRLSFSDFLS 612
|
650 660 670 680
....*....|....*....|....*....|....*....|....*....
gi 568961004 698 RYGILMtqqELSLSDKK-----EVCKVVLHRLIQDSnqYQFGRTKIFFR 741
Cdd:cd14878 613 RYKPLA---DTLLGEKKkqsaeERCRLVLQQCKLQG--WQMGVRKVFLK 656
|
|
| MYSc_Myo20 |
cd14881 |
class XX myosin, motor domain; These class 20 myosins are primarily insect myosins with such ... |
82-740 |
2.98e-91 |
|
class XX myosin, motor domain; These class 20 myosins are primarily insect myosins with such members as Drosophila, Daphnia, and mosquitoes. These myosins contain a single IQ motif in the neck region. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276847 [Multi-domain] Cd Length: 633 Bit Score: 310.89 E-value: 2.98e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 82 AVLHNLRIRFAESKLiYTYSGIILVAMNPYKQLPiygdAIIHAYSGQNMGDMdPHIFAVAEEAYKQMARNNRNQSIIVSG 161
Cdd:cd14881 2 AVMKCLQARFYAKEF-FTNVGPILLSVNPYRDVG----NPLTLTSTRSSPLA-PQLLKVVQEAVRQQSETGYPQAIILSG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 162 ESGAGKTVSARYAMRYFATVSKSSSNAHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDErnqiiGANMRT-- 239
Cdd:cd14881 76 TSGSGKTYASMLLLRQLFDVAGGGPETDAFKHLAAAFTVLRSLGSAKTATNSESSRIGHFIEVQVTD-----GALYRTki 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 240 --YLLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYTRMGGNTVIEGVNDRADMVETQKT-FTLLGFK 316
Cdd:cd14881 151 hcYFLDQTRVIRPLPGEKNYHIFYQMLAGLSQEERVKLHLDGYSPANLRYLSHGDTRQNEAEDAARFQAWKAcLGILGIP 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 317 kdFqMDVFKILAAILHLGNVQVTTvGNERSSVSEDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVVKPMTRPQAIN 396
Cdd:cd14881 231 --F-LDVVRVLAAVLLLGNVQFID-GGGLEVDVKGETELKSVAALLGVSGAALFRGLTTRTHNARGQLVKSVCDANMSNM 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 397 ARDALAKKIYAHLFDFIVEQIN--QALHFSGKQHT---FIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKLE 471
Cdd:cd14881 307 TRDALAKALYCRTVATIVRRANslKRLGSTLGTHAtdgFIGILDMFGFEDPKPSQLEHLCINLCAETMQHFYNTHIFKSS 386
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 472 QEEYMKEDIPWTL-IDFYDNQPVIDLIEA-KMGILELLDEECLlPHGTDENWLQKLYNNFVNKNSLFEKPRMSNSSFIIQ 549
Cdd:cd14881 387 IESCRDEGIQCEVeVDYVDNVPCIDLISSlRTGLLSMLDVECS-PRGTAESYVAKIKVQHRQNPRLFEAKPQDDRMFGIR 465
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 550 HFADKVEYQCEGFLEKNRDTVYDMLVEILRAskfHLCAaffqespvpsspFGamitvksakqvIKPNTKHFRTTVGNkfr 629
Cdd:cd14881 466 HFAGRVVYDASDFLDTNRDVVPDDLVAVFYK---QNCN------------FG-----------FATHTQDFHTRLDN--- 516
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 630 sslylLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGILMTQQELS 709
Cdd:cd14881 517 -----LLRTLVHARPHFVRCIRSNTTETPNHFDRGTVVRQIRSLQVLETVNLMAGGYPHRMRFKAFNARYRLLAPFRLLR 591
|
650 660 670 680
....*....|....*....|....*....|....*....|.
gi 568961004 710 LSDKKEV--CKVVL-----HRLIQDSN---QYQFGRTKIFF 740
Cdd:cd14881 592 RVEEKALedCALILqfleaQPPSKLSSvstSWALGKRHIFL 632
|
|
| MYSc_Myo23 |
cd14884 |
class XXIII myosin, motor domain; These myosins are predicted to have a neck region with 1-2 ... |
81-732 |
8.97e-88 |
|
class XXIII myosin, motor domain; These myosins are predicted to have a neck region with 1-2 IQ motifs and a single MyTH4 domain in its C-terminal tail. The lack of a FERM domain here is odd since MyTH4 domains are usually found alongside FERM domains where they bind to microtubules. At any rate these Class XXIII myosins are still proposed to function in the apicomplexan microtubule cytoskeleton. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276850 [Multi-domain] Cd Length: 685 Bit Score: 302.60 E-value: 8.97e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 81 PAVLHNLRIRFAESKlIYTYSGIILVAMNPYKQLP-IYGDAIIHAYS-------GQNMGDMDPHIFAVAEEAYKQMARNN 152
Cdd:cd14884 1 PNVLQNLKNRYLKNK-IYTFHASLLLALNPYKPLKeLYDQDVMNVYLhkksnsaASAAPFPKAHIYDIANMAYKNMRGKL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 153 RNQSIIVSGESGAGKTVSARYAMRYFATVSKSSSNAHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQI 232
Cdd:cd14884 80 KRQTIVVSGHSGSGKTENCKFLFKYFHYIQTDSQMTERIDKLIYINNILESMSNATTIKNNNSSRCGRINLLIFEEVENT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 233 I---------GANMRTYLLEKSRVVFQSENERNYHIFYQL---CASAQQSE------FKHLKLGSAEEFNYTR-MGGNTV 293
Cdd:cd14884 160 QknmfngcfrNIKIKILLLEINRCIAHNFGERNFHVFYQVlrgLSDEDLARrnlvrnCGVYGLLNPDESHQKRsVKGTLR 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 294 IEGVNDRADMVETQK---TFTLL-------GFKKDFQMDVFKILAAILHLGNvqvttvgnerssvseddSHLKVFCELLG 363
Cdd:cd14884 240 LGSDSLDPSEEEKAKdekNFVALlhglhyiKYDERQINEFFDIIAGILHLGN-----------------RAYKAAAECLQ 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 364 LETSKVAQWLCNRKIVTSSETVVKPMTRPQAINARDALAKKIYAHLFDFIVEQINQAlHFSGKQ-------------HTF 430
Cdd:cd14884 303 IEEEDLENVIKYKNIRVSHEVIRTERRKENATSTRDTLIKFIYKKLFNKIIEDINRN-VLKCKEkdesdnediysinEAI 381
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 431 IGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKLEQEEYMKEDIPWTLIDFYDNQPVIDLIEAKMGILELLDEE 510
Cdd:cd14884 382 ISILDIYGFEELSGNDFDQLCINLANEKLNNYYINNEIEKEKRIYARENIICCSDVAPSYSDTLIFIAKIFRRLDDITKL 461
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 511 CLLPHG-TDENWLQKLYNNfVNKNSLFEK-------PRMSNSS----------FIIQHFADKVEYQCEGFLEKNRDTVYD 572
Cdd:cd14884 462 KNQGQKkTDDHFFRYLLNN-ERQQQLEGKvsygfvlNHDADGTakkqnikkniFFIRHYAGLVTYRINNWIDKNSDKIET 540
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 573 MLVEILRASKfhlcaaffqespvpsspfgaMITVKSAkqVIKPNTKHFrTTVGNKFRSSLYLLMETLNATTPHYVRCIKP 652
Cdd:cd14884 541 SIETLISCSS--------------------NRFLREA--NNGGNKGNF-LSVSKKYIKELDNLFTQLQSTDMYYIRCFLP 597
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 653 NDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRwtylefysrygilMTQQELSLSDKKEVCKVVLHRLIQDSNQYQ 732
Cdd:cd14884 598 NAKMLPNTFKRLLVYRQLKQCGSNEMIKILNRGLSHK-------------IPKKETAAALKEQIAKELEKCNSNTDIEYQ 664
|
|
| MYSc_Myo18 |
cd01386 |
class XVIII myosin, motor domain; Many members of this class contain a N-terminal PDZ domain ... |
83-741 |
2.85e-86 |
|
class XVIII myosin, motor domain; Many members of this class contain a N-terminal PDZ domain which is commonly found in proteins establishing molecular complexes. The motor domain itself does not exhibit ATPase activity, suggesting that it functions as an actin tether protein. It also has two IQ domains that probably bind light chains or related calmodulins and a C-terminal tail with two sections of coiled-coil domains, which are thought to mediate homodimerization. The function of these myosins are largely unknown. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276837 [Multi-domain] Cd Length: 689 Bit Score: 298.07 E-value: 2.85e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 83 VLHNLRIRFAeSKLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVSGE 162
Cdd:cd01386 3 VLHTLRQRYG-ANLIHTYAGPSLIVINPRHPLAVYSEKVAKMFKGCRREDMPPHIYASAQSAYRAMLMSRRDQSIVLLGR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 163 SGAGKTVSARYAMRYFATVSKSSSNAHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQIIGANMRTYLL 242
Cdd:cd01386 82 SGSGKTTNCRHILEYLVTAAGSVGGVLSVEKLNAALTVLEAFGNVRTALNGNATRFSQLFSLDFDQAGQLASASIQTLLL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 243 EKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYTRMGGNTVIEGVNDRA-DMVETQKTFTLLGFKKDFQM 321
Cdd:cd01386 162 ERSRVARRPEGESNFNVFYYLLAGADAALRTELHLNQLAESNSFGIVPLQKPEDKQKAAaAFSKLQAAMKTLGISEEEQR 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 322 DVFKILAAILHLGNVQVTTVGNERSSVSEDDSHLKVFCELLGLETSKVAQWLCNRK---IVTSSETVVKPMTRPQ----- 393
Cdd:cd01386 242 AIWSILAAIYHLGAAGATKAASAGRKQFARPEWAQRAAYLLGCTLEELSSAIFKHHlsgGPQQSTTSSGQESPARsssgg 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 394 ----AINARDALAKKIYAHLFDFIVEQINQALhfSGKQHTF--IGVLDIYGFEtfdvN----------SFEQFCINYANE 457
Cdd:cd01386 322 pkltGVEALEGFAAGLYSELFAAVVSLINRSL--SSSHHSTssITIVDTPGFQ----NpahsgsqrgaTFEDLCHNYAQE 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 458 KLQQQFNLHVFKLEQEEYMKEDIPWTLIDFYDN-QPVIDLI---------------EAKMGILELLDEECLLPHGTDENW 521
Cdd:cd01386 396 RLQLLFHERTFVAPLERYKQENVEVDFDLPELSpGALVALIdqapqqalvrsdlrdEDRRGLLWLLDEEALYPGSSDDTF 475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 522 LQKLYNNF----VNKNSLFEKPRMSNSSFIIQHF--ADKVEYQCEGFLeknrdtvydmlveilRASKFHLCA----AFFQ 591
Cdd:cd01386 476 LERLFSHYgdkeGGKGHSLLRRSEGPLQFVLGHLlgTNPVEYDVSGWL---------------KAAKENPSAqnatQLLQ 540
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 592 ESpvpSSPFGAmitVKsakqvikpntkhfRTTVGNKFRSSLYLLMETLNATTPHYVRCIKPN------DEKMPFEFDSKR 665
Cdd:cd01386 541 ES---QKETAA---VK-------------RKSPCLQIKFQVDALIDTLRRTGLHFVHCLLPQhnagkdERSTSSPAAGDE 601
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 666 IVQ------QLRACGVLETIRISAQSYPSRWTYLEFYSRYGILMTQQELSLSDKKEVC--KVVLHRLIQ----DSNQYQF 733
Cdd:cd01386 602 LLDvpllrsQLRGSQLLDALRLYRQGFPDHMPLGEFRRRFQVLAPPLTKKLGLNSEVAdeRKAVEELLEeldlEKSSYRI 681
|
....*...
gi 568961004 734 GRTKIFFR 741
Cdd:cd01386 682 GLSQVFFR 689
|
|
| MYSc_Myo44 |
cd14905 |
class XLIV myosin, motor domain; There is little known about the function of the myosin XLIV ... |
93-741 |
1.23e-80 |
|
class XLIV myosin, motor domain; There is little known about the function of the myosin XLIV class. Members here include cellular slime mold Polysphondylium and soil-living amoeba Dictyostelium. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276870 Cd Length: 673 Bit Score: 281.21 E-value: 1.23e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 93 ESKLIYTYSGIILVAMNPYKQLP-IYGDAIIHAYSgQNMGdMDPHIFAVAEEAYKQMARNNRNQSIIVSGESGAGKTVSA 171
Cdd:cd14905 12 KKEIIYTYIGPILVSVNPLRYLPfLHSQELVRNYN-QRRG-LPPHLFALAAKAISDMQDFRRDQLIFIGGESGSGKSENT 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 172 RYAMRYFATVSKSSSNaHVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQIIGANMRTYLLEKSRVVFQS 251
Cdd:cd14905 90 KIIIQYLLTTDLSRSK-YLRDYILESGIILESFGHASTDSNHNSSRWGKYFEMFYSLYGEIQGAKLYSYFLDENRVTYQN 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 252 ENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYTRMGGNTVIEGVNDRADMVETQKTFTLLGFKKDFQMDVFKILAAIL 331
Cdd:cd14905 169 KGERNFHIFYQFLKGITDEEKAAYQLGDINSYHYLNQGGSISVESIDDNRVFDRLKMSFVFFDFPSEKIDLIFKTLSFII 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 332 HLGNVQVTTvGNERSSVsEDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSEtvvkpmtrpqAINARDALAKKIYAHLFD 411
Cdd:cd14905 249 ILGNVTFFQ-KNGKTEV-KDRTLIESLSHNITFDSTKLENILISDRSMPVNE----------AVENRDSLARSLYSALFH 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 412 FIVEQINQALHFSGKQHTfIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKLEQEEYMKEDIPW-TLIDFYDN 490
Cdd:cd14905 317 WIIDFLNSKLKPTQYSHT-LGILDLFGQESSQLNGYEQFSINFLEERLQQIYLQTVLKQEQREYQTERIPWmTPISFKDN 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 491 QPVIDLIEAKMGILELLDEECllpHGTDENWLQKLyNNFVNKNSLF-EKPrmsnSSFIIQHFADKVEYQCEGFLEKNRDT 569
Cdd:cd14905 396 EESVEMMEKIINLLDQESKNI---NSSDQIFLEKL-QNFLSRHHLFgKKP----NKFGIEHYFGQFYYDVRGFIIKNRDE 467
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 570 VYDML-----------------VEILRASKFHLCAAFFQESPVPSSPFGAMITVKSA-----KQVIKPNTKH------FR 621
Cdd:cd14905 468 ILQRTnvlhknsitkylfsrdgVFNINATVAELNQMFDAKNTAKKSPLSIVKVLLSCgsnnpNNVNNPNNNSggggggGN 547
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 622 TTVGNKFRSSLYLLMETLNATTP------HYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEF 695
Cdd:cd14905 548 SGGGSGSGGSTYTTYSSTNKAINnsncdfHFIRCIKPNSKKTHLTFDVKSVNEQIKSLCLLETTRIQRFGYTIHYNNKIF 627
|
650 660 670 680
....*....|....*....|....*....|....*....|....*...
gi 568961004 696 YSRYGILMTQQE--LSLSDKKEVCKVVLHRLIQDSnqYQFGRTKIFFR 741
Cdd:cd14905 628 FDRFSFFFQNQRnfQNLFEKLKENDINIDSILPPP--IQVGNTKIFLR 673
|
|
| MYSc_Myo12 |
cd14874 |
class XXXIII myosin, motor domain; Little is known about the XXXIII class of myosins. They ... |
82-741 |
5.20e-78 |
|
class XXXIII myosin, motor domain; Little is known about the XXXIII class of myosins. They are found predominately in nematodes. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276841 [Multi-domain] Cd Length: 628 Bit Score: 272.13 E-value: 5.20e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 82 AVLHNLRIRFaESKLIYTYSGIILVAMNPYKQLPIYGDAIIHAYsgqnmgdmdpHIFAVAEEAYKQMARNNRN-QSIIVS 160
Cdd:cd14874 2 GIAQNLHERF-KKGQTYTKASNVLVFVNDFNKLSIQDQLVIKKC----------HISGVAENALDRIKSMSSNaESIVFG 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 161 GESGAGKTVSARYAMRYFATVSKSS-SNAHVEdkvlASNPITEAVGNAKTTRNDNSSRFGKYTEISFdERNQIIGANMR- 238
Cdd:cd14874 71 GESGSGKSYNAFQVFKYLTSQPKSKvTTKHSS----AIESVFKSFGCAKTLKNDEATRFGCSIDLLY-KRNVLTGLNLKy 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 239 TYLLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYTRMGGNT--VIEGVNDRADMVETQKTftlLGFK 316
Cdd:cd14874 146 TVPLEVPRVISQKPGERNFNVFYEVYHGLNDEMKAKFGIKGLQKFFYINQGNSTenIQSDVNHFKHLEDALHV---LGFS 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 317 KDFQMDVFKILAAILHLGNVQVTTVGNerSSVSED------DSHLKVFCELLGLEtskVAQWLcnrKIVTSSETVVKPMT 390
Cdd:cd14874 223 DDHCISIYKIISTILHIGNIYFRTKRN--PNVEQDvveignMSEVKWVAFLLEVD---FDQLV---NFLLPKSEDGTTID 294
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 391 RPQAINARDALAKKIYAHLFDFIVEQInqALHFSGKQHT-FIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFK 469
Cdd:cd14874 295 LNAALDNRDSFAMLIYEELFKWVLNRI--GLHLKCPLHTgVISILDHYGFEKYNNNGVEEFLINSVNERIENLFVKHSFH 372
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 470 LEQEEYMKEDIPwtlIDF-----YDNQPVIDLIEAK-MGILELLDEECLLPHGTDENWLQKLYNNFVNKnSLFEKPRMSN 543
Cdd:cd14874 373 DQLVDYAKDGIS---VDYkvpnsIENGKTVELLFKKpYGLLPLLTDECKFPKGSHESYLEHCNLNHTDR-SSYGKARNKE 448
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 544 S-SFIIQHFADKVEYQCEGFLEKNRDTVYDMLVEILRASKFHLCAAFFQespvpSSPFGAMITVKSAKQVIKPNTKHfrt 622
Cdd:cd14874 449 RlEFGVRHCIGTTWYNVTDFFSRNKRIISLSAVQLLRSSKNPIIGLLFE-----SYSSNTSDMIVSQAQFILRGAQE--- 520
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 623 tvgnkfrsslylLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGIL 702
Cdd:cd14874 521 ------------IADKINGSHAHFVRCIKSNNERQPKKFDIPLVNRQIKNLLLAELLSFRIKGYPVKISKTTFARQYRCL 588
|
650 660 670 680
....*....|....*....|....*....|....*....|
gi 568961004 703 MTQQELSLSDKKEVCKVVLH-RLIQDSNQYQFGRTKIFFR 741
Cdd:cd14874 589 LPGDIAMCQNEKEIIQDILQgQGVKYENDFKIGTEYVFLR 628
|
|
| MYSc_Myo21 |
cd14882 |
class XXI myosin, motor domain; The myosins here are comprised of insects. Leishmania class ... |
83-741 |
4.92e-77 |
|
class XXI myosin, motor domain; The myosins here are comprised of insects. Leishmania class XXI myosins do not group with them. Myo21, unlike other myosin proteins, contains UBA-like protein domains and has no structural or functional relationship with the myosins present in other organisms possessing cilia or flagella. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. They have diverse tails with IQ, WW, PX, and Tub domains. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276848 Cd Length: 642 Bit Score: 269.69 E-value: 4.92e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 83 VLHNLRIRFaESKLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVSGE 162
Cdd:cd14882 3 ILEELRHRY-LMGESYTFIGDILLSLNPNEIKQEYPQEFHAKYRCKSRSDNAPHIFSVADSAYQDMLHHEEPQHIILSGE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 163 SGAGKTVSARYAMRYFATVSKSSSNahVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQIIGANMRTYLL 242
Cdd:cd14882 82 SYSGKTTNARLLIKHLCYLGDGNRG--ATGRVESSIKAILALVNAGTPLNADSTRCILQYQLTFGSTGKMSGAIFWMYQL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 243 EKSRVVFQSENERNYHIFYQLCASAQQSE-FKHLKLGSAEEFNYTRMGGNTVIEGV----NDRADMVETQKTFTLLGFKK 317
Cdd:cd14882 160 EKLRVSTTDGNQSNFHIFYYFYDFIEAQNrLKEYNLKAGRNYRYLRIPPEVPPSKLkyrrDDPEGNVERYKEFEEILKDL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 318 DFQMD----VFKILAAILHLGNVQVttVGNERSSVSEDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVVKPMTRPQ 393
Cdd:cd14882 240 DFNEEqletVRKVLAAILNLGEIRF--RQNGGYAELENTEIASRVAELLRLDEKKFMWALTNYCLIKGGSAERRKHTTEE 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 394 AINARDALAKKIYAHLFDFIVEQINQALHFS----GKQHTfIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFK 469
Cdd:cd14882 318 ARDARDVLASTLYSRLVDWIINRINMKMSFPravfGDKYS-ISIHDMFGFECFHRNRLEQLMVNTLNEQMQYHYNQRIFI 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 470 LEQEEYMKEDIPWTLIDFYDNQPVID-LIEAKMGILELLDEECLLPHGTdenwlQKLYNNFVNKNSLFEKPrMSNSSFII 548
Cdd:cd14882 397 SEMLEMEEEDIPTINLRFYDNKTAVDqLMTKPDGLFYIIDDASRSCQDQ-----NYIMDRIKEKHSQFVKK-HSAHEFSV 470
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 549 QHFADKVEYQCEGFLEKNRDTVYDMLVEILRASkfhlcaaffqespvpsspfgamiTVKSAKQVIKPNTKHFRTTVGNKF 628
Cdd:cd14882 471 AHYTGRIIYDAREFADKNRDFVPPEMIETMRSS-----------------------LDESVKLMFTNSQVRNMRTLAATF 527
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 629 RSSLYLLMETL----NATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGILMT 704
Cdd:cd14882 528 RATSLELLKMLsigaNSGGTHFVRCIRSDLEYKPRGFHSEVVRQQMRALAVLDTAKARQKGFSYRIPFQEFLRRYQFLAF 607
|
650 660 670
....*....|....*....|....*....|....*..
gi 568961004 705 QQELSLSDKKEVCKVVLHRLIQDSnqYQFGRTKIFFR 741
Cdd:cd14882 608 DFDETVEMTKDNCRLLLIRLKMEG--WAIGKTKVFLK 642
|
|
| Myo5-like_CBD |
cd14945 |
Cargo binding domain of myosin 5 and similar proteins; Class V myosins are well studied ... |
1376-1702 |
4.34e-66 |
|
Cargo binding domain of myosin 5 and similar proteins; Class V myosins are well studied unconventional myosins, represented by three paralogs (Myo5 a,b,c) in vertebrates and two (myo2 and myo4) in fungi and related to plant class XI myosins. Their C-terminal cargo binding domains is important for the binding of a diverse set of cargos, including membrane vesicles, organelles, proteins and mRNA. MyoV-CBDs interact with several adaptor proteins that in turn interact with the cargo.
Pssm-ID: 271253 [Multi-domain] Cd Length: 288 Bit Score: 225.74 E-value: 4.34e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1376 EDEGKLIQNLILDLKPRGVVVnmiPGLPAHILFMCVRYADSLNDANMLKSLMNSAINGIKHVVKEHFEDLEMLSFWLSNT 1455
Cdd:cd14945 1 SEEDSLLRGIVTDFEPSSGDH---KLTPAYILYLCIRHAASNGLTGQSTSLLNKVLKTIQQVVQQHNDDMQLLAFWLSNA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1456 CHFLNCLKQYSGEEEFMKYNSPQQNKNCLNNFDLTEYRQILSDVAIRIYHQFIIVMENNLQPiivpgmleyeslqgisgl 1535
Cdd:cd14945 78 SELLYFLKQDSKLYGAAGEAPQKEEEQKLTVSDLNELKQDLEAVSIKIYQQALKYLNKNLQP------------------ 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1536 kptgfrkrsssiddtdayTMTSILQQLSYFYSTMCQNGLDPEIVRQAVKQLFYLVGAVTLNSLLLRKDMCSCRKGMQIRC 1615
Cdd:cd14945 140 ------------------KIRDIVKFLNSFLDLLKSFHVHPEIRSQVFTQLFSFINARLFNQLITKKDALSWSRGMQIRA 201
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1616 NISFLEEWLKdKNVQSSLAKETLEPLSQAAWLLQVKKTTDSDAKEIAQCCTSLSAVQIIKILNSYTPIDDFEKRVNPSFV 1695
Cdd:cd14945 202 NISRLEEWCE-GRGLEHLAVDFLSKLIQAVQLLQLKKYTQEDIEILCELCPSLNPAQLQAILTQYQPANYGESPVPKEIL 280
|
....*..
gi 568961004 1696 RKVQALL 1702
Cdd:cd14945 281 RTLAAEV 287
|
|
| MYSc_Myo32 |
cd14893 |
class XXXII myosin, motor domain; Class XXXII myosins do not contain any IQ motifs, but ... |
84-699 |
1.02e-65 |
|
class XXXII myosin, motor domain; Class XXXII myosins do not contain any IQ motifs, but possess tandem MyTH4 and FERM domains. The myosin classes XXX to XXXIV contain members from Phytophthora species and Hyaloperonospora parasitica. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276858 Cd Length: 741 Bit Score: 238.72 E-value: 1.02e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 84 LHNLRIRFAESKlIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQN----------MGDMDPHIFAVAEEAYKQMARNNR 153
Cdd:cd14893 4 LYTLRARYRMEQ-VYTWVDRVLVGVNPVTPLPIYTPDHMQAYNKSReqtplyekdtVNDAPPHVFALAQNALRCMQDAGE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 154 NQSIIVSGESGAGKTVSARYAMRYFATVSKSSSNAH-----------VEDKVLASNPITEAVGNAKTTRNDNSSRFGKYT 222
Cdd:cd14893 83 DQAVILLGGMGAGKSEAAKLIVQYLCEIGDETEPRPdsegasgvlhpIGQQILHAFTILEAFGNAATRQNRNSSRFAKMI 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 223 EISFDERNQIIGANMRTYLLEKSRVVFQSENERNYHIFYQLCASAQQ--SEFKHLKLG-SAEEFNYTRMGGNTVIEGVND 299
Cdd:cd14893 163 SVEFSKHGHVIGGGFTTHYFEKSRVIDCRSHERNFHVFYQVLAGVQHdpTLRDSLEMNkCVNEFVMLKQADPLATNFALD 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 300 RADMVETQKTFTLLGFKKDFQMDVFKILAAILHLGNVQV---------------TTVGNERSSVSEDDSHLKVFCELLGL 364
Cdd:cd14893 243 ARDYRDLMSSFSALRIRKNQRVEIVRIVAALLHLGNVDFvpdpeggksvggansTTVSDAQSCALKDPAQILLAAKLLEV 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 365 ETSKVAQWLCNRKIVT--SSETV--VKPMTRPQAINARDALAKKIYAHLFDFIVEQINQAL-----HFSGK----QHTFI 431
Cdd:cd14893 323 EPVVLDNYFRTRQFFSkdGNKTVssLKVVTVHQARKARDTFVRSLYESLFNFLVETLNGILggifdRYEKSniviNSQGV 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 432 GVLDIYGFETFD--VNSFEQFCINYANEK-----LQQQFNLHVFKLEQEEYMKED--IPWTLIDF-YDNQPVIDLIEAK- 500
Cdd:cd14893 403 HVLDMVGFENLTpsQNSFDQLCFNYWSEKvhhfyVQNTLAINFSFLEDESQQVENrlTVNSNVDItSEQEKCLQLFEDKp 482
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 501 MGILELLDEECLLPHGTDENWLQKLY--NNFV------NKNSLFEKPRMSNSS-----FIIQHFADKVEYQCEGFLEKNR 567
Cdd:cd14893 483 FGIFDLLTENCKVRLPNDEDFVNKLFsgNEAVgglsrpNMGADTTNEYLAPSKdwrllFIVQHHCGKVTYNGKGLSSKNM 562
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 568 DTVYDMLVEILRASKFHLCAAffqespVPSSPFGAMITVKSAKQVIKpntkhfRTTVGNKFRSSLY-------------- 633
Cdd:cd14893 563 LSISSTCAAIMQSSKNAVLHA------VGAAQMAAASSEKAAKQTEE------RGSTSSKFRKSASsaresknitdsaat 630
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568961004 634 -------LLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRY 699
Cdd:cd14893 631 dvynqadALLHALNHTGKNFLVCIKPNETLEEGVFDSAYVMKQIRMNHLVELMQASRSIFTVHLTYGHFFRRY 703
|
|
| Motor_domain |
cd01363 |
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the ... |
104-227 |
2.75e-44 |
|
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Some of the names do not match with what is given in the sequence list. This is because they are based on the current nomenclature by Kollmar/Sebe-Pedros.
Pssm-ID: 276814 [Multi-domain] Cd Length: 170 Bit Score: 158.66 E-value: 2.75e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 104 ILVAMNPYKQLPIYGDA-IIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVSGESGAGKTVSARYAMRYFATVS 182
Cdd:cd01363 1 VLVRVNPFKELPIYRDSkIIVFYRGFRRSESQPHVFAIADPAYQSMLDGYNNQSIFAYGESGAGKTETMKGVIPYLASVA 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 568961004 183 KSSSNA--------------HVEDKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFD 227
Cdd:cd01363 81 FNGINKgetegwvylteitvTLEDQILQANPILEAFGNAKTTRNENSSRFGKFIEILLD 139
|
|
| MYSc_Myo24B |
cd14938 |
class XXIV B myosin, motor domain; These myosins have a 1-2 IQ motifs in their neck and a ... |
81-739 |
8.73e-42 |
|
class XXIV B myosin, motor domain; These myosins have a 1-2 IQ motifs in their neck and a coiled-coil region in their C-terminal tail. The functions of these myosins remain elusive. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276898 [Multi-domain] Cd Length: 713 Bit Score: 165.78 E-value: 8.73e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 81 PAVLHNLRIRFaESKLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQN-MGDMDPHIFAVAEEAYKQMARNNRNQSIIV 159
Cdd:cd14938 1 PSVLYHLKERF-KNNKFYTKMGPLLIFINPKINNNINNEETIEKYKCIDcIEDLSLNEYHVVHNALKNLNELKRNQSIII 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 160 SGESGAGKTVSARYAMRYFATVSKSS------SNAHVEDKVLAS----------------NPITEAVGNAKTTRNDNSSR 217
Cdd:cd14938 80 SGESGSGKSEIAKNIINFIAYQVKGSrrlptnLNDQEEDNIHNEentdyqfnmsemlkhvNVVMEAFGNAKTVKNNNSSR 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 218 FGKYTEISFDERnQIIGANMRTYLLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEefNYTRMGGNTVIEGV 297
Cdd:cd14938 160 FSKFCTIHIENE-EIKSFHIKKFLLDKERLINRKANENSFNIFYYIINGSSDKFKKMYFLKNIE--NYSMLNNEKGFEKF 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 298 NDRAD-MVETQKTFTLLgFKKDFQMD-VFKILAAILHLGNVQVTTV---------------------------GNERSSV 348
Cdd:cd14938 237 SDYSGkILELLKSLNYI-FDDDKEIDfIFSVLSALLLLGNTEIVKAfrkksllmgknqcgqninyetilseleNSEDIGL 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 349 SEDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSeTVVKPMTRPQAINARDALAKKIYAHLFDFIVEQINQALHFSGKQH 428
Cdd:cd14938 316 DENVKNLLLACKLLSFDIETFVKYFTTNYIFNDS-ILIKVHNETKIQKKLENFIKTCYEELFNWIIYKINEKCTQLQNIN 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 429 TF---IGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKLEQEEYMKEDIPWTL-IDFYDNQPVID-LIEAKMGI 503
Cdd:cd14938 395 INtnyINVLDMAYFENSKDNSLEQLLINTTNEEIIKIKNDCLYKKRVLSYNEDGIFCEYnSENIDNEPLYNlLVGPTEGS 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 504 LELLDEECLLPHGTDENWLQKLYNNFVNKNSLFEKPR---MSNSSFIIQHFADKVEYQCEGFLEKNRDTVYDMLVEILRA 580
Cdd:cd14938 475 LFSLLENVSTKTIFDKSNLHSSIIRKFSRNSKYIKKDditGNKKTFVITHSCGDIIYNAENFVEKNIDILTNRFIDMVKQ 554
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 581 SKFHLCAAFFQESPVPSSpfgAMITVKSAKQVIKPNTKHFRTTVGNK-------FRSSLYLLMETLNATTPHYVRCIKPN 653
Cdd:cd14938 555 SENEYMRQFCMFYNYDNS---GNIVEEKRRYSIQSALKLFKRRYDTKnqmavslLRNNLTELEKLQETTFCHFIVCMKPN 631
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 654 DEK-MPFEFDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGILMtqqelslSDKKEVCKVVLHRLIQDSNQYQ 732
Cdd:cd14938 632 ESKrELCSFDANIVLRQVRNFSIVEASQLKVGYYPHKFTLNEFLSIFDIKN-------EDLKEKVEALIKSYQISNYEWM 704
|
....*..
gi 568961004 733 FGRTKIF 739
Cdd:cd14938 705 IGNNMIF 711
|
|
| MYSc_Myo33 |
cd14894 |
class myosin, motor domain; Class XXXIII myosins have variable numbers of IQ domain and 2 ... |
187-705 |
8.79e-35 |
|
class myosin, motor domain; Class XXXIII myosins have variable numbers of IQ domain and 2 tandem ANK repeats that are separated by a PH domain. The myosin classes XXX to XXXIV contain members from Phytophthora species and Hyaloperonospora parasitica. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276859 [Multi-domain] Cd Length: 871 Bit Score: 144.89 E-value: 8.79e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 187 NAHVEDK---VLASNPITEAVGNAKTTRNDNSSRFGKYT--EISFDERN---QIIGANMRTYLLEKSRVVFQ------SE 252
Cdd:cd14894 239 NPHAAKKlsiVLDSNIVLEAFGHATTSMNLNSSRFGKMTtlQVAFGLHPwefQICGCHISPFLLEKSRVTSErgresgDQ 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 253 NERNYHIFYQLCASAQQSEF-----KHLKLGSAEEFNYTRMG-GNTVIEGVNDRADM----VETQKT----FTLLGFKKD 318
Cdd:cd14894 319 NELNFHILYAMVAGVNAFPFmrllaKELHLDGIDCSALTYLGrSDHKLAGFVSKEDTwkkdVERWQQvidgLDELNVSPD 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 319 FQMDVFKILAAILHLGNVQVT--TVGNE--RSSVSEDDSHLKVfCELLGL-ETSKVAQWLCNRKIV--TSSETVVKPMTR 391
Cdd:cd14894 399 EQKTIFKVLSAVLWLGNIELDyrEVSGKlvMSSTGALNAPQKV-VELLELgSVEKLERMLMTKSVSlqSTSETFEVTLEK 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 392 PQAINARDALAKKIYAHLFDFIVEQINQALHFS-----GKQH------------TFIGVLDIYGFETFDVNSFEQFCINY 454
Cdd:cd14894 478 GQVNHVRDTLARLLYQLAFNYVVFVMNEATKMSalstdGNKHqmdsnasapeavSLLKIVDVFGFEDLTHNSLDQLCINY 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 455 ANEKLQQqfnlhvfKLEQEEYMKEDIPWTLIDFYDNQPVIDLIEAKMGILELLDEECLLPHGTDENWLQ-----KLY-NN 528
Cdd:cd14894 558 LSEKLYA-------REEQVIAVAYSSRPHLTARDSEKDVLFIYEHPLGVFASLEELTILHQSENMNAQQeekrnKLFvRN 630
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 529 FVNKNS--LFEKPR-MSNSS-----------FIIQHFADKVEYQCEGFLEKNRDTVY-DMLVEILRASKFHLCAAFFQES 593
Cdd:cd14894 631 IYDRNSsrLPEPPRvLSNAKrhtpvllnvlpFVIPHTRGNVIYDANDFVKKNSDFVYaNLLVGLKTSNSSHFCRMLNESS 710
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 594 PVPSSPFGAMITVKSAKQVIKpNTKHFrttVGnKFRSSLYLLMETLNATTPHYVRCIKPNDEKMPFEFDSKRIVQQLRAC 673
Cdd:cd14894 711 QLGWSPNTNRSMLGSAESRLS-GTKSF---VG-QFRSHVNVLTSQDDKNMPFYFHCIRPNAKKQPSLVNNDLVEQQCRSQ 785
|
570 580 590
....*....|....*....|....*....|....*....
gi 568961004 674 GV---LETIRISAQSYP----SRWTYLefySRYGILMTQ 705
Cdd:cd14894 786 RLirqMEICRNSSSSYSaidiSKSTLL---TRYGSLLRE 821
|
|
| DIL |
pfam01843 |
DIL domain; The DIL domain has no known function. |
1581-1682 |
1.27e-33 |
|
DIL domain; The DIL domain has no known function.
Pssm-ID: 460359 [Multi-domain] Cd Length: 103 Bit Score: 125.40 E-value: 1.27e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1581 QAVKQLFYLVGAVTLNSLLLRKDMCSCRKGMQIRCNISFLEEWLKDKNVQSSlAKETLEPLSQAAWLLQVKKTTDSDAKE 1660
Cdd:pfam01843 1 QLFSQLFYFINAELFNRLLLRKKYCSWSKGMQIRYNLSRLEEWARSNGLESE-ARDHLAPLIQAAQLLQLRKSTLEDLDS 79
|
90 100
....*....|....*....|..
gi 568961004 1661 IAQCCTSLSAVQIIKILNSYTP 1682
Cdd:pfam01843 80 ILQVCPALNPLQLHRLLTLYQP 101
|
|
| Myo5p-like_CBD_DIL_ANK |
cd15473 |
cargo binding domain of myosin 5-like of dil and ankyrin domain containing protein; DIL and ... |
1370-1724 |
6.11e-25 |
|
cargo binding domain of myosin 5-like of dil and ankyrin domain containing protein; DIL and ankyrin domain-containing protein are a group of fungal proteins that contain a domain homologous to the cargo binding domain of class V myosins and ankyrin repeats. Their function is unknown.
Pssm-ID: 271257 [Multi-domain] Cd Length: 316 Bit Score: 107.64 E-value: 6.11e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1370 MLEYKKEDEGKLIQNLILDLKPRgVVVNMIPgLPAHILFMCVRYADSLNDANMLKSLMNSAINGIKHVVKEHFEDLEMLS 1449
Cdd:cd15473 2 MFVFSEDELPRILDLLITNMTPQ-RSPSQRP-VPANLLFLCARYAHYHCSPELLEDLLLGALDRIEDVVEANPWDMTLLA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1450 FWLSNTC---HFLNCLKQYsgeeefmkynspqqnknclnNFDLTEYRQILSDVAIRIYHQFIIVMENNLQPIIvpgmley 1526
Cdd:cd15473 80 FWLSNVTlllHYLKKDAGL--------------------VEATPEFQQELAELINEIFVLIIRDAERRIDKLL------- 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1527 eslqgisglkptgfrkrsssidDTDAYTMTSILQQLSYfysTMCQNGLDPEIVRQAVKQLFYLVGAVTLNSLLLRKDMCS 1606
Cdd:cd15473 133 ----------------------DASPRNITSLLSSTLY---VLELYDVHPAIIIQALSQLFYWLGCELFNRILTNKKYLC 187
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1607 CRKGMQIRCNISFLEEWLKDKNVQ-------SSLAKETLEPLSQAAWLLQVKKTTDSDAKEIA--QCCTSLSAVQIIKIL 1677
Cdd:cd15473 188 RSKAMQIRMNLSALEDWARSNNLQpekgespPRIARSHLAPVIQLLQWLQCLSSLDDFESLIAtiQQLDALNPLQLLRAV 267
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 568961004 1678 NSYTPiDDFEKRVNPSFVRKVQALLNNRgdsaqlmLDTKYLFQVTFP 1724
Cdd:cd15473 268 KDYRY-EVNEGRMPEECVKYLAQLQKDW-------LDSRYMLPFSLP 306
|
|
| fMyo2p_CBD |
cd15480 |
cargo binding domain of fungal myosin 2; Yeast myosin V travels along actin cables, actin ... |
1450-1749 |
4.35e-23 |
|
cargo binding domain of fungal myosin 2; Yeast myosin V travels along actin cables, actin filaments that are bundled by fimbrin, in the presence of tropomyosin. This is in contrast to the other vertebrate class V myosins. Like other class V myosins, fungal myosin 2 and 4 contain a C-terminal cargo binding domain. Myo 2 binds to Vac17, vacuole-specific cargo adaptor, and Mmr1, mitochondria-specific cargo adaptor. Both adaptors bind competitivly at the same site.
Pssm-ID: 271264 Cd Length: 363 Bit Score: 103.04 E-value: 4.35e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1450 FWLSNTcHFLNCLKQYSgEEEFMKYNSPqqnKNCLNNFDLTEYRQILSDV-------AIRIYHQFIIVMENNLQPiivpg 1522
Cdd:cd15480 97 FWLSNV-HELLSFVCLA-ESDILQGIGP---GKDMREEEWEEYERLVTVVkhdleslEYNIYHTWMKELKKRLEK----- 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1523 mleyeslqgisglkptgfrkrsssiddtdayTMTSILQQLSYFYSTMCQNGLDPEIVRQAVKQLFYLVGAVTLNSLLLRK 1602
Cdd:cd15480 167 -------------------------------TMDDILNFFNKVYKSMKSYYIEESVIRQVVTELLKLIGVTAFNDLLMRR 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1603 DMCSCRKGMQIRCNISFLEEWLKDKNVQSSLAKetLEPLSQAAWLLQVKKTTDSDAKEIAQCCTSLSAVQIIKILNSYTp 1682
Cdd:cd15480 216 NFLSWKRGLQINYNITRLEEWCKSHDIPEGTLQ--LEHLMQATKLLQLKKATLEDIEIIYDVCWILTPAQIQKLISQYY- 292
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568961004 1683 IDDFEKRVNPSFVRKVQALLNNRGDSAQLML----DTKYLFQVtfPFTASPHALEmTQIPSSFKLGFLRRL 1749
Cdd:cd15480 293 VADYENPISPEILKAVAARVKPEDKSDHLLLiplvEEVGPFED--PFPREIAGLE-AYIPAWLNLPHIRRL 360
|
|
| Myo5p-like_CBD_fungal |
cd15474 |
cargo binding domain of fungal myosin V -like proteins; Yeast myosin V travels along actin ... |
1443-1701 |
2.88e-21 |
|
cargo binding domain of fungal myosin V -like proteins; Yeast myosin V travels along actin cables, actin filaments that are bundled by fimbrin, in the presence of tropomyosin. This is in contrast to the other vertebrate class V myosins. Like other class V myosins, fungal myosin 2 and 4 contain a C-terminal cargo binding domain. In case of Myo4 it has been shown to bind to the adapter protein She3p (Swi5p-dependent HO expression 3), which in turn anchors myosin 4 to its cargos, zip-coded mRNP (messenger ribonucleoprotein particles) and tER (tubular endoplasmic reticulum). Myo 2 binds to Vac17, vacuole-specific cargo adaptor, and Mmr1, mitochondria-specific cargo adaptor. Both adaptors bind competitivly at the same site.
Pssm-ID: 271258 Cd Length: 352 Bit Score: 97.49 E-value: 2.88e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1443 EDLEMLSFWLSNT-------CHFLNCLKQYSGEEEFMKYNSPQQNKNClnnfdltEYRQILSdvaiRIYHQFIIVMENNL 1515
Cdd:cd15474 78 ETIPDGAFWLANLhelrsfvVYLLSLIEHSSSDEFSKESEEYWNTLFD-------KTLKHLS----NIYSTWIDKLNKHL 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1516 QPIIVPGMLEYESLQGISGlkptgFRKRSSSIDDTDAYTMTSILQQLSYFYSTMCQNGLDPEIVRQAVKQLFYLVGAVTL 1595
Cdd:cd15474 147 SPKIEGAVLVLLTSLDLSE-----LIDLNKEFFNKPKKKMADLITFLNEVYDLLQSFSVQPELLNAIVSSTLQYINVEAF 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1596 NSLLLRKDMCSCRKGMQIRCNISFLEEWLKDKNVqsSLAKETLEPLSQAAWLLQVKKTTDSDAKEIAQCCTSLSAVQIIK 1675
Cdd:cd15474 222 NSLITKRSALSWKRGSQISYNVSRLKEWCHQHGL--SDANLQLEPLIQASKLLQLRKDDENDFKIILSVCYALNPAQIQK 299
|
250 260
....*....|....*....|....*.
gi 568961004 1676 ILNSYTPiDDFEKRVNPSFVRKVQAL 1701
Cdd:cd15474 300 LLDKYQP-ANYEAPVPKEFLNALEKL 324
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
850-1385 |
3.01e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 85.11 E-value: 3.01e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 850 YRKLLQEHKAVILQKYARAWLARRRFQNIRRfvLNIQLTYRVQRLQKKLEDQNRENHGLVEKLTSLAALRVGDLEKVQKL 929
Cdd:TIGR02168 286 LQKELYALANEISRLEQQKQILRERLANLER--QLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEEL 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 930 EAELEKAATHRHSYEEKGRRYRDTVEERLSKLQKHNAELELQRERAEQ---MLQEKSEELKEKMDKLTRQLFDDVQ---- 1002
Cdd:TIGR02168 364 EAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERledRRERLQQEIEELLKKLEEAELKELQaele 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1003 KEEQQRLVLEKGFELKTQAYEKQIESLREEIKALKDERSQLHH----------QLEEGQVTSD----------RLKGEVA 1062
Cdd:TIGR02168 444 ELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQlqarldslerLQENLEGFSEgvkallknqsGLSGILG 523
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1063 RLSKQAKTISEFEKEIEL-------------LQAQKIDVE--------------------KHVQSQKREMRERMSEVTKQ 1109
Cdd:TIGR02168 524 VLSELISVDEGYEAAIEAalggrlqavvvenLNAAKKAIAflkqnelgrvtflpldsikgTEIQGNDREILKNIEGFLGV 603
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1110 L--LESYDIE---DVRSRLS----VEDLEHLNE--------------DGELWF-----AYEGLKKATRVLEshfqsqkdc 1161
Cdd:TIGR02168 604 AkdLVKFDPKlrkALSYLLGgvlvVDDLDNALElakklrpgyrivtlDGDLVRpggviTGGSAKTNSSILE--------- 674
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1162 YEKEIEglnfkvvHLSQEINHLQKLFREETDINESIRHEVTRLTSEnmmIPDFKQQISELERQKQDLESRLkEQAEKIEG 1241
Cdd:TIGR02168 675 RRREIE-------ELEEKIEELEEKIAELEKALAELRKELEELEEE---LEQLRKELEELSRQISALRKDL-ARLEAEVE 743
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1242 KLEEPFSHLNRIREEERMQGRAPHPFLRAVEAQSEMHPEGKERLVGAIHEPHEAIKFPKKQPEAEEEVESILQQEASRLS 1321
Cdd:TIGR02168 744 QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLR 823
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568961004 1322 LEKRDLEEELDMKDRMIRRLQDQVKTLTKTTEKANHvhlpsgSREYLGMLEYKKEDEGKLIQNL 1385
Cdd:TIGR02168 824 ERLESLERRIAATERRLEDLEEQIEELSEDIESLAA------EIEELEELIEELESELEALLNE 881
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
849-1356 |
9.46e-16 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 83.63 E-value: 9.46e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 849 RYRKLLQEHKAVILQKYARAWLARRRFQNIRRFVLNIQLTYRVQR--LQKKLEDQNRENHGLVEKLTSLAALRVGDLEKV 926
Cdd:pfam15921 268 RIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNsmYMRQLSDLESTVSQLRSELREAKRMYEDKIEEL 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 927 QK----LEAELEKAATHRHSYEEKGRRYRDTVEERLSKLQKHNAELELQRERAEQmLQEKSEELKEKMDKLTRQLfDDVQ 1002
Cdd:pfam15921 348 EKqlvlANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKR-LWDRDTGNSITIDHLRREL-DDRN 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1003 KEEQQRLVLEKGFELKTQA-YEKQIESLREEIKALkDERSQLHHQLEEgqvTSDRLKGEVARLSKQAKTISEFEKEIEll 1081
Cdd:pfam15921 426 MEVQRLEALLKAMKSECQGqMERQMAAIQGKNESL-EKVSSLTAQLES---TKEMLRKVVEELTAKKMTLESSERTVS-- 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1082 qaqkiDVEKHVQSQKREMRERMSEVTKqllesydiedVRSR--LSVEDLEHLNEDGE-----------LWFAYEGLKKAT 1148
Cdd:pfam15921 500 -----DLTASLQEKERAIEATNAEITK----------LRSRvdLKLQELQHLKNEGDhlrnvqteceaLKLQMAEKDKVI 564
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1149 RVLESHFQSQKDC---YEKEIEGLNFKVVHLSQEIN----HLQ--KLFREETDinESIRHEVTRLT-------------S 1206
Cdd:pfam15921 565 EILRQQIENMTQLvgqHGRTAGAMQVEKAQLEKEINdrrlELQefKILKDKKD--AKIRELEARVSdlelekvklvnagS 642
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1207 ENM-MIPDFKQQ----ISELERQKQDLESrLKEQAE------------------KIEGKLEEPFSHLNRIREE-ERMQGR 1262
Cdd:pfam15921 643 ERLrAVKDIKQErdqlLNEVKTSRNELNS-LSEDYEvlkrnfrnkseemetttnKLKMQLKSAQSELEQTRNTlKSMEGS 721
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1263 APHPFLRAVEAQSEMHPE-GK-ERLVGAIHEPHEAIKFPKKQPEAEEEVESILQQEASRLSLEKRDLEEELDMKDRMIRR 1340
Cdd:pfam15921 722 DGHAMKVAMGMQKQITAKrGQiDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERR 801
|
570
....*....|....*.
gi 568961004 1341 LQDQVKTLTKTTEKAN 1356
Cdd:pfam15921 802 LKEKVANMEVALDKAS 817
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
890-1353 |
3.47e-15 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 81.65 E-value: 3.47e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 890 RVQRLQKKLEDQNRENHGLVEKLTSLAAlRVGDLEKVQKLEAELEKAATHRHSYEEKGRRYRDT---VEERLSKLQKHNA 966
Cdd:PRK03918 253 SKRKLEEKIRELEERIEELKKEIEELEE-KVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRlsrLEEEINGIEERIK 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 967 ELELQRERAEQmLQEKSEELKEKMDKLTR--QLFDDVQ--KEEQQRLVLEKG------FELKTQAYEKQIESLREEIKAL 1036
Cdd:PRK03918 332 ELEEKEERLEE-LKKKLKELEKRLEELEErhELYEEAKakKEELERLKKRLTgltpekLEKELEELEKAKEEIEEEISKI 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1037 KDERSQLHHQLEEGQVTSDRLKGE-----------------------VARLSKQAKTISEFEKEIELLQAQKIDVEKHVQ 1093
Cdd:PRK03918 411 TARIGELKKEIKELKKAIEELKKAkgkcpvcgrelteehrkelleeyTAELKRIEKELKEIEEKERKLRKELRELEKVLK 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1094 SQKREMRERmsEVTKQllesydIEDVRSRLSVEDLEHLNEDGELwfaYEGLKKATRVLESHFQSQKD------CYEKEIE 1167
Cdd:PRK03918 491 KESELIKLK--ELAEQ------LKELEEKLKKYNLEELEKKAEE---YEKLKEKLIKLKGEIKSLKKelekleELKKKLA 559
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1168 GLNFKVVHLSQEINHLQKLFREE-----TDINESIRhEVTRLTSENMMIPDFKqqiSELERQKQDLESrLKEQAEKIEGK 1242
Cdd:PRK03918 560 ELEKKLDELEEELAELLKELEELgfesvEELEERLK-ELEPFYNEYLELKDAE---KELEREEKELKK-LEEELDKAFEE 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1243 LEEPFSHLNRIREEERmqgraphpflravEAQSEMHPEGKERLVGAIHEPHEAIKFPKKQpeaEEEVESILQQEASRLsl 1322
Cdd:PRK03918 635 LAETEKRLEELRKELE-------------ELEKKYSEEEYEELREEYLELSRELAGLRAE---LEELEKRREEIKKTL-- 696
|
490 500 510
....*....|....*....|....*....|.
gi 568961004 1323 ekRDLEEELDMKDRMIRRLQDQVKTLTKTTE 1353
Cdd:PRK03918 697 --EKLKEELEEREKAKKELEKLEKALERVEE 725
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
862-1390 |
2.60e-14 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 78.57 E-value: 2.60e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 862 LQKYARAW--------LARRRFQNIRRFvlnIQLTYRVQRL----QKKLEDQNRENHGLVEKLTSLAalrvgdlEKVQKL 929
Cdd:PRK03918 157 LDDYENAYknlgevikEIKRRIERLEKF---IKRTENIEELikekEKELEEVLREINEISSELPELR-------EELEKL 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 930 EAELEKAATHRHSYEEKgrryrdtvEERLSKLQKHNAELELQRERAEQMLQEKSEELKEKMDKLTRqlFDDVQKEEQQRL 1009
Cdd:PRK03918 227 EKEVKELEELKEEIEEL--------EKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKE--LKELKEKAEEYI 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1010 VLEK---GFELKTQAYEKQIESLREEIKALKDersqlhhQLEEGQVTSDRLKGEVARLSKQAKTISEFEKEIELLQAQKI 1086
Cdd:PRK03918 297 KLSEfyeEYLDELREIEKRLSRLEEEINGIEE-------RIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKA 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1087 DVEKHVQSQKREMRERMSEVTKQLLE----SYDIEDVRSRLSVEDLEHLNEDGELWFAYEGLKKATRVL--------ESH 1154
Cdd:PRK03918 370 KKEELERLKKRLTGLTPEKLEKELEElekaKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCpvcgreltEEH 449
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1155 FQSQKDCYEKEIEGLNFKVVHLSQEINHLQKLFREEtdinESIRHEVTRLTSENMMIPDFKQ--------QISELERQKQ 1226
Cdd:PRK03918 450 RKELLEEYTAELKRIEKELKEIEEKERKLRKELREL----EKVLKKESELIKLKELAEQLKEleeklkkyNLEELEKKAE 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1227 DLEsRLKEQAEKIEGKLEEPFSHLNRIREEERMQGRAPHPFLRAVEAQSEMHPEGKERLVGAIHEPHEAIK----FPKKQ 1302
Cdd:PRK03918 526 EYE-KLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKelepFYNEY 604
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1303 PEAeEEVESILQQEASRLSLEKRDLE---EELDMKDRMIRRLQDQVKTLTKTTEKANHVHLP----SGSREYLGMLEYKK 1375
Cdd:PRK03918 605 LEL-KDAEKELEREEKELKKLEEELDkafEELAETEKRLEELRKELEELEKKYSEEEYEELReeylELSRELAGLRAELE 683
|
570
....*....|....*
gi 568961004 1376 EDEgKLIQNLILDLK 1390
Cdd:PRK03918 684 ELE-KRREEIKKTLE 697
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
922-1262 |
3.15e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.56 E-value: 3.15e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 922 DLEKVQKLEAELEKAATHRHSYEEKGRRYRDTVEE-----------RLSKLQKHNAELELQRERAEQMLQEKSEELKEKM 990
Cdd:TIGR02168 187 NLDRLEDILNELERQLKSLERQAEKAERYKELKAElrelelallvlRLEELREELEELQEELKEAEEELEELTAELQELE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 991 DKLTRQLFDDVQKEEQQRLVLEKGFELKT--QAYEKQIESLREEIKALKDERSQLHHQLEEGQVTSDRLKGEVARLSKQa 1068
Cdd:TIGR02168 267 EKLEELRLEVSELEEEIEELQKELYALANeiSRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEK- 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1069 ktISEFEKEIELLQAQkidvEKHVQSQKREMRERMSEVTKQllesydIEDVRSRLSvedlehlnedgelwfayeGLKKAT 1148
Cdd:TIGR02168 346 --LEELKEELESLEAE----LEELEAELEELESRLEELEEQ------LETLRSKVA------------------QLELQI 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1149 RVLESHFQSqkdcYEKEIEGLNFKVVHLSQEINHLQKLFrEETDINESIRhevtRLTSENMMIPDFKQQISELERQKQDL 1228
Cdd:TIGR02168 396 ASLNNEIER----LEARLERLEDRRERLQQEIEELLKKL-EEAELKELQA----ELEELEEELEELQEELERLEEALEEL 466
|
330 340 350
....*....|....*....|....*....|....
gi 568961004 1229 ESRLKEQAEKIEGKLEEPFSHLNRIREEERMQGR 1262
Cdd:TIGR02168 467 REELEEAEQALDAAERELAQLQARLDSLERLQEN 500
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
893-1240 |
6.05e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.79 E-value: 6.05e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 893 RLQKKLEDQNRENHGLVEKLTSLAALRVGDLEKVQKLEAELEKAATHRHSYEEKGRRYRDTVE---ERLSKLQKHNAELE 969
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEqleERIAQLSKELTELE 760
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 970 LQRERAEQMLQEKSEELKEkmdkltrqlfDDVQKEEQQRLVlekgfelktQAYEKQIESLREEIKALKDERSQLHhqlEE 1049
Cdd:TIGR02168 761 AEIEELEERLEEAEEELAE----------AEAEIEELEAQI---------EQLKEELKALREALDELRAELTLLN---EE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1050 GQVTSDRLKGEVARLSKQAKTISEFEKEIELLQAQKIDVEkHVQSQKREMRERMSEVTKQLLESYDIEDVRSRLSVEDLE 1129
Cdd:TIGR02168 819 AANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA-AEIEELEELIEELESELEALLNERASLEEALALLRSELE 897
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1130 HLNEDGElwfAYEGLKKATRVLESHFQSQKDCYEKEIEGLNFKVVHLSQEIN--------HLQKLFREETDINESIRHEV 1201
Cdd:TIGR02168 898 ELSEELR---ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSeeysltleEAEALENKIEDDEEEARRRL 974
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 568961004 1202 TRLTSE-------NMM-IPDFKQQ---ISELERQKQDLESRLKEQAEKIE 1240
Cdd:TIGR02168 975 KRLENKikelgpvNLAaIEEYEELkerYDFLTAQKEDLTEAKETLEEAIE 1024
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
874-1198 |
9.08e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.02 E-value: 9.08e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 874 RFQNIRRFVLNIQL---TYRVQRLQKKLEDQNRENHGLVEKLTSLAAlrvgdleKVQKLEAELEkaaTHRHSYEEkgrry 950
Cdd:TIGR02168 214 RYKELKAELRELELallVLRLEELREELEELQEELKEAEEELEELTA-------ELQELEEKLE---ELRLEVSE----- 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 951 rdtVEERLSKLQKHNAELELQRERAEQMLQEKSEELKEKMDKLtRQLFDDVQKEEQQRLVLEKGFELKTQAYE---KQIE 1027
Cdd:TIGR02168 279 ---LEEEIEELQKELYALANEISRLEQQKQILRERLANLERQL-EELEAQLEELESKLDELAEELAELEEKLEelkEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1028 SLREEIKALKDERSQLHHQLEEGQVTSDRLKGEVARLSKQAKTISefeKEIELLQAQKIDVEKHVQSQKREMRERMSEvt 1107
Cdd:TIGR02168 355 SLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLN---NEIERLEARLERLEDRRERLQQEIEELLKK-- 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1108 kqlLESYDIEDVRSRLSVEDLEHLNEDGELWFAYEGLKKAtrvleshfQSQKDCYEKEIEGLNFKVVHLSQEINHLQKLF 1187
Cdd:TIGR02168 430 ---LEEAELKELQAELEELEEELEELQEELERLEEALEEL--------REELEEAEQALDAAERELAQLQARLDSLERLQ 498
|
330
....*....|.
gi 568961004 1188 REETDINESIR 1198
Cdd:TIGR02168 499 ENLEGFSEGVK 509
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
947-1352 |
3.34e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.09 E-value: 3.34e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 947 GRRYRDTVEERLSKLQKHN--AELELQRERAEQMLQEKSEELKEkmdklTRQLFDDVQKEEQQRLVLEKGFELKTQAYEK 1024
Cdd:TIGR02168 659 GVITGGSAKTNSSILERRReiEELEEKIEELEEKIAELEKALAE-----LRKELEELEEELEQLRKELEELSRQISALRK 733
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1025 QIESLREEIKALKDERSQLHHQLEEGQvtsDRLKGEVARLSKQAKTISEFEKEIELLQAQKIDVEKHVQSQKREMRERMS 1104
Cdd:TIGR02168 734 DLARLEAEVEQLEERIAQLSKELTELE---AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRA 810
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1105 EVTkqlLESYDIEDVRSRLSVEDLEHLNEDGELWFAYEGLKKATRVLEShfqsqkdcYEKEIEGLNFKVVHLSQEINHLQ 1184
Cdd:TIGR02168 811 ELT---LLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIES--------LAAEIEELEELIEELESELEALL 879
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1185 KLFREETDINESIRHEVTRLTSEnmmIPDFKQQISELERQKQDLESRLKEQAEKIEGkLEEPFSHLN-RIREEERMQGRA 1263
Cdd:TIGR02168 880 NERASLEEALALLRSELEELSEE---LRELESKRSELRRELEELREKLAQLELRLEG-LEVRIDNLQeRLSEEYSLTLEE 955
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1264 PHPFLRAVEAQSEMHPEGKERLVGAIHEpheaikFPKKQPEAEEEVESiLQQEASRLSLEKRDLEEELDMKDRMIRRLQD 1343
Cdd:TIGR02168 956 AEALENKIEDDEEEARRRLKRLENKIKE------LGPVNLAAIEEYEE-LKERYDFLTAQKEDLTEAKETLEEAIEEIDR 1028
|
....*....
gi 568961004 1344 QVKTLTKTT 1352
Cdd:TIGR02168 1029 EARERFKDT 1037
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
895-1332 |
6.60e-13 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 73.92 E-value: 6.60e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 895 QKKLEDQNRENHGLVEKLTSLAALRVGDLEKVQKLEAELEKAATHRHSYEEKGRRYR------DTVEERLSKLQKHNAEL 968
Cdd:PRK02224 191 QLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEerreelETLEAEIEDLRETIAET 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 969 ELQRERAEQMLQEKSEELKEKMDKLTRQL----FDDVQKE--EQQRLVLEKGFE----------LKTQAYEKQIESLREE 1032
Cdd:PRK02224 271 EREREELAEEVRDLRERLEELEEERDDLLaeagLDDADAEavEARREELEDRDEelrdrleecrVAAQAHNEEAESLRED 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1033 IKALKDERSQLHhqlEEGQVTSDRLKGEVARLSKQAKTISEFEKEIELLQAQKIDVE---KHVQSQKREMRERMSEVTKQ 1109
Cdd:PRK02224 351 ADDLEERAEELR---EEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPvdlGNAEDFLEELREERDELRER 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1110 LLE-SYDIEDVRSRlsVEDLEHLNEDG---ELWFAYEGLKKATRVLEShfQSQKDCYEKEIEGLNFKVVHLSQEINHLQK 1185
Cdd:PRK02224 428 EAElEATLRTARER--VEEAEALLEAGkcpECGQPVEGSPHVETIEED--RERVEELEAELEDLEEEVEEVEERLERAED 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1186 LFREETDIN--ESIRHEVTRLTSENMMIPDFKQ-QISELERQKQDLESRLKEQAEKIEGKLEEPFSHLNRIR--EEERMQ 1260
Cdd:PRK02224 504 LVEAEDRIErlEERREDLEELIAERRETIEEKReRAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAelNSKLAE 583
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568961004 1261 GRAPHPFLRAVEAQSEMHPEGKERLvGAIHEPHEAIKfpkkqpEAEEEVESILQQEASRlsleKRDLEEELD 1332
Cdd:PRK02224 584 LKERIESLERIRTLLAAIADAEDEI-ERLREKREALA------ELNDERRERLAEKRER----KRELEAEFD 644
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
891-1355 |
7.99e-13 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 74.06 E-value: 7.99e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 891 VQRLQKKLEDQNRENHglveklTSLAALRVGDLEKVQKLEAELEKAATHRHSYEEKGRRYRDTVEE---RLSKLQKHNAE 967
Cdd:pfam01576 329 VTELKKALEEETRSHE------AQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAElqaELRTLQQAKQD 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 968 LELQRERAEQMLQE----------KSEELKEKMDKLTRQLfDDV----QKEEQQRLVLEKGF-ELKTQAYEKQiESLREE 1032
Cdd:pfam01576 403 SEHKRKKLEGQLQElqarlseserQRAELAEKLSKLQSEL-ESVssllNEAEGKNIKLSKDVsSLESQLQDTQ-ELLQEE 480
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1033 ----------IKALKDERSQLHHQLEEGQVTSDRLKGEV----ARLSKQAKTISEFEKEIELLQAQKIDVEKHVQSQKRE 1098
Cdd:pfam01576 481 trqklnlstrLRQLEDERNSLQEQLEEEEEAKRNVERQLstlqAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQ 560
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1099 MRERMSEVTK---------QLLESYDIEDVRSRLSVEDLEHLNEDGELWFAYEglkkatRVLESHFQSQKDCYEKEIEGL 1169
Cdd:pfam01576 561 LEEKAAAYDKlektknrlqQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEE------KAISARYAEERDRAEAEAREK 634
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1170 NFKVVHLSQEINHLQKLFREETDINESIRHEVTRLTSENmmiPDFKQQISELERQKQDLESR---LKEQAEKIEGKLEEp 1246
Cdd:pfam01576 635 ETRALSLARALEEALEAKEELERTNKQLRAEMEDLVSSK---DDVGKNVHELERSKRALEQQveeMKTQLEELEDELQA- 710
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1247 fSHLNRIREEERMQGrAPHPFLRAVEAQSEMHPEGKERLVGAIHEpHEAikfpkkqpEAEEEVESILQQEASR--LSLEK 1324
Cdd:pfam01576 711 -TEDAKLRLEVNMQA-LKAQFERDLQARDEQGEEKRRQLVKQVRE-LEA--------ELEDERKQRAQAVAAKkkLELDL 779
|
490 500 510
....*....|....*....|....*....|....*...
gi 568961004 1325 RDLEEELDMKDR-------MIRRLQDQVKTLTKTTEKA 1355
Cdd:pfam01576 780 KELEAQIDAANKgreeavkQLKKLQAQMKDLQRELEEA 817
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
945-1272 |
1.67e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 72.79 E-value: 1.67e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 945 EKGRRYRDTVEERLSKLQKHNAELELQRERaeqmLQEKSEElKEKMDKLTRQLfddvQKEEQQRLVLEK-GFELKTQAYE 1023
Cdd:TIGR02169 173 EKALEELEEVEENIERLDLIIDEKRQQLER----LRREREK-AERYQALLKEK----REYEGYELLKEKeALERQKEAIE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1024 KQIESLREEIKALKDERSQLHHQLEEGQVTSDRLKGEVARLSKQA-----KTISEFEKEIELLQAQKIDVEKHVQSQKRE 1098
Cdd:TIGR02169 244 RQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEqlrvkEKIGELEAEIASLERSIAEKERELEDAEER 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1099 MRERMSEVTKQLLEsydIEDVRSRLsvedlehlnedgelwfayEGLKKATRVLESHFQSQKDCYEK---EIEGLNFK--- 1172
Cdd:TIGR02169 324 LAKLEAEIDKLLAE---IEELEREI------------------EEERKRRDKLTEEYAELKEELEDlraELEEVDKEfae 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1173 -VVHLSQEINHLQKLFREETDINESIRHEVTRLTSENMMIPDFKQQISELERQKQDLESRLKEQAEKIEgKLEEPFSHLN 1251
Cdd:TIGR02169 383 tRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIK-KQEWKLEQLA 461
|
330 340
....*....|....*....|.
gi 568961004 1252 RIREEERMQGRAPHPFLRAVE 1272
Cdd:TIGR02169 462 ADLSKYEQELYDLKEEYDRVE 482
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
988-1390 |
1.83e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 72.79 E-value: 1.83e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 988 EKMDKLTRQL--FDDVQKEEQQRLVLEKGFELKTQAYEKQI---ESLREEIKALKDERSQLHHQLEEGQVTSDRLKGEVA 1062
Cdd:PRK03918 145 ESREKVVRQIlgLDDYENAYKNLGEVIKEIKRRIERLEKFIkrtENIEELIKEKEKELEEVLREINEISSELPELREELE 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1063 RLSKQAKTISEFEKEIELLQAQKIDVEKHVQS---QKREMRERMSEVTKQllesydIEDVRSRlsVEDLEHLNEDGELWF 1139
Cdd:PRK03918 225 KLEKEVKELEELKEEIEELEKELESLEGSKRKleeKIRELEERIEELKKE------IEELEEK--VKELKELKEKAEEYI 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1140 AYEGLKKATRVLESHFQSQKDCYEKEIEGLNFKVVHLSQEINHLQKLFREEtdinESIRHEVTRLTSENMMIPDFKQQIS 1219
Cdd:PRK03918 297 KLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKL----KELEKRLEELEERHELYEEAKAKKE 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1220 ELERQKQDLESRLKeqaEKIEGKLEEPFSHLNRIREEERMQGRAphpfLRAVEAQSEMHPEGKERLVGA----------I 1289
Cdd:PRK03918 373 ELERLKKRLTGLTP---EKLEKELEELEKAKEEIEEEISKITAR----IGELKKEIKELKKAIEELKKAkgkcpvcgreL 445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1290 HEPHEA---IKFPKKQPEAEEEVESILQQEaSRLSLEKRDLEEELDMKDRMI--RRLQDQVKTLTKTTEKANHVHLPSGS 1364
Cdd:PRK03918 446 TEEHRKellEEYTAELKRIEKELKEIEEKE-RKLRKELRELEKVLKKESELIklKELAEQLKELEEKLKKYNLEELEKKA 524
|
410 420
....*....|....*....|....*.
gi 568961004 1365 REYLGMLEYKKEDEGKlIQNLILDLK 1390
Cdd:PRK03918 525 EEYEKLKEKLIKLKGE-IKSLKKELE 549
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
896-1345 |
2.38e-12 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 72.38 E-value: 2.38e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 896 KKLEDQNRENHGLVEKLTSLAALRVGDLEKVQKLEAELEKAATHRHSYEEKGRRYRDTVEERLSKLQKHNAELELQRERA 975
Cdd:PRK02224 272 REREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDA 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 976 EQmLQEKSEELKEKMDKLTRQLFDDVQKEEQQRLVLEkgfelktqAYEKQIESLREEIKALKDERSQLHHQLEEGQVTSD 1055
Cdd:PRK02224 352 DD-LEERAEELREEAAELESELEEAREAVEDRREEIE--------ELEEEIEELRERFGDAPVDLGNAEDFLEELREERD 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1056 RLKGEVARLSKQAKTISE-FEKEIELLQA-------QKIDVEKHVQSQKrEMRERMSEVTKQLLesyDIEDVRSRLSvED 1127
Cdd:PRK02224 423 ELREREAELEATLRTARErVEEAEALLEAgkcpecgQPVEGSPHVETIE-EDRERVEELEAELE---DLEEEVEEVE-ER 497
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1128 LEHLnedgelwfayEGLKKAtrvleshfqsqkdcyEKEIEGLNFKVVHLSQEINHLQKLFREETDINESIRHEVTRLTSE 1207
Cdd:PRK02224 498 LERA----------EDLVEA---------------EDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAE 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1208 -----------NMMIPDFKQQISELERQKQDLESRLkEQAEKIEGKLEEpfshLNRIREE-ERMQGRaphpflraVEAQS 1275
Cdd:PRK02224 553 aeekreaaaeaEEEAEEAREEVAELNSKLAELKERI-ESLERIRTLLAA----IADAEDEiERLREK--------REALA 619
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568961004 1276 EMHPEGKERLvgaihephEAIKFPKKQPEAEEEVESI--LQQEASRLSLEKRDLEEELDMKDRMIRRLQDQV 1345
Cdd:PRK02224 620 ELNDERRERL--------AEKRERKRELEAEFDEARIeeAREDKERAEEYLEQVEEKLDELREERDDLQAEI 683
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
890-1378 |
2.57e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 69.40 E-value: 2.57e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 890 RVQRLQKKLEDQNRenhglVEKLTSLAALRVGDLEKVQKLEAELEKAATHRHSYEEKGRryrdtvEERLSKLQKHNAELE 969
Cdd:PTZ00121 1379 KADAAKKKAEEKKK-----ADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK------ADEAKKKAEEAKKAD 1447
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 970 LQRERAEQmlQEKSEELKEKMDKLTRQlfDDVQKEEQQRlvlEKGFELKTQAYE--KQIESLR--EEIKALKDE--RSQL 1043
Cdd:PTZ00121 1448 EAKKKAEE--AKKAEEAKKKAEEAKKA--DEAKKKAEEA---KKADEAKKKAEEakKKADEAKkaAEAKKKADEakKAEE 1520
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1044 HHQLEEGQVTSDRLKGEVARLSKQAKTISEFEKEIELLQAQKIDV--EKHVQSQKREMRERMSEVTKQlLESYDIEDVRS 1121
Cdd:PTZ00121 1521 AKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKaeEAKKAEEDKNMALRKAEEAKK-AEEARIEEVMK 1599
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1122 RLSVEDL---EHLNEDGELWFAYEGLKKATRVleshfqsqkdcyEKEIEGLNFKVvhlSQEINHLQKLFREEtDINESIR 1198
Cdd:PTZ00121 1600 LYEEEKKmkaEEAKKAEEAKIKAEELKKAEEE------------KKKVEQLKKKE---AEEKKKAEELKKAE-EENKIKA 1663
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1199 HEVTRLTSENMMIPDFKQQISELERQKQDLESRLKEQAEKIE---GKLEEPFSHLNRIREEERMQGraphpfLRAVEAQS 1275
Cdd:PTZ00121 1664 AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEelkKKEAEEKKKAEELKKAEEENK------IKAEEAKK 1737
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1276 EMHpEGKERLVGAIHEPHEAIKFPKKQPEAEEEVESILQQEASRlslekrdLEEELDMKDRMIRRLQDQVktlTKTTeKA 1355
Cdd:PTZ00121 1738 EAE-EDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAV-------IEEELDEEDEKRRMEVDKK---IKDI-FD 1805
|
490 500
....*....|....*....|...
gi 568961004 1356 NHVHLPSGSREYLGMLEYKKEDE 1378
Cdd:PTZ00121 1806 NFANIIEGGKEGNLVINDSKEME 1828
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
848-1150 |
5.23e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.04 E-value: 5.23e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 848 RRYRKLLQEHKavilQKYARAWLARRRFQNIRRFVLNIQLTYRVQRLQKKLEDQNRENHGLVEKLTSLAALRV---GDLE 924
Cdd:COG1196 213 ERYRELKEELK----ELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELeleEAQA 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 925 KVQKLEAELEKAATHRHSYEEKGRRYRDTVEE----------RLSKLQKHNAELELQRERAEQMLQEKSEELKEKMDKLT 994
Cdd:COG1196 289 EEYELLAELARLEQDIARLEERRRELEERLEEleeelaeleeELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 995 RQLFDDVQKEEQQRLVLEKGFELKTQAYE--KQIESLREEIKALKDERSQLHHQLEEGQvtsDRLKGEVARLSKQAKTIS 1072
Cdd:COG1196 369 EAEAELAEAEEELEELAEELLEALRAAAElaAQLEELEEAEEALLERLERLEEELEELE---EALAELEEEEEEEEEALE 445
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568961004 1073 EFEKEIELLQAQKIDVEKHVQSQKREMRERMSEVTkQLLESYDIEDVRSRLSVEDLEHLNEDGELWFAYEGLKKATRV 1150
Cdd:COG1196 446 EAAEEEAELEEEEEALLELLAELLEEAALLEAALA-ELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGL 522
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
923-1361 |
1.62e-10 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 65.94 E-value: 1.62e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 923 LEKVQKLEAELEKAATHRHSYEEKgRRYRDTVEERLSKLQKHNAELELQRERAEQMLQekSEELKEKMDKLTRQLfddvq 1002
Cdd:COG4717 70 LKELKELEEELKEAEEKEEEYAEL-QEELEELEEELEELEAELEELREELEKLEKLLQ--LLPLYQELEALEAEL----- 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1003 KEEQQRLVlekgfelKTQAYEKQIESLREEIKALKDERSQLHHQLEE-----GQVTSDRLKGEVARLSKQAKTISEFEKE 1077
Cdd:COG4717 142 AELPERLE-------ELEERLEELRELEEELEELEAELAELQEELEElleqlSLATEEELQDLAEELEELQQRLAELEEE 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1078 IELLQAQKIDVEKHVQSQKREM-RERMSEVTKQLLESYDIEDVRSRLSVEDLEHLN---EDGELWFAYEGLkkaTRVLES 1153
Cdd:COG4717 215 LEEAQEELEELEEELEQLENELeAAALEERLKEARLLLLIAAALLALLGLGGSLLSlilTIAGVLFLVLGL---LALLFL 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1154 HFQSQKDCYEKEIEGLNfKVVHLSQEINHLQKLFREETDINESIrhEVTRLTSENMMIPDFKQQISELERQKQDL--ESR 1231
Cdd:COG4717 292 LLAREKASLGKEAEELQ-ALPALEELEEEELEELLAALGLPPDL--SPEELLELLDRIEELQELLREAEELEEELqlEEL 368
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1232 LKEQAEKIE----GKLEEPFSHLNRIREEERMQGRaphpfLRAVEAQSEMHPEGKERLVGAIHEP---HEAIKFPKKQPE 1304
Cdd:COG4717 369 EQEIAALLAeagvEDEEELRAALEQAEEYQELKEE-----LEELEEQLEELLGELEELLEALDEEeleEELEELEEELEE 443
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568961004 1305 AEEEVESILQQEA---------------SRLSLEKRDLEEELDMKDRMIRRLQDQVKTLTKTTEKANHVHLP 1361
Cdd:COG4717 444 LEEELEELREELAeleaeleqleedgelAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERLP 515
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
894-1354 |
2.31e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 65.81 E-value: 2.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 894 LQKKLEDQNRENHGLVEKLTSLAalrvgdlEKVQKLEAELEKAATHRHSYEEKGRRYRDTVEERLSKLQKHNAELElQRE 973
Cdd:TIGR04523 216 LESQISELKKQNNQLKDNIEKKQ-------QEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIK-ELE 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 974 RAEQMLQEKSEELK-EKMDKLTRQLFDDVQKEEQQRLVLEKGFELKTQAYEK---QIESLREEIKALKDERSQLHHQLEE 1049
Cdd:TIGR04523 288 KQLNQLKSEISDLNnQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQlneQISQLKKELTNSESENSEKQRELEE 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1050 GQVTSDRLKGEvarlskqaktISEFEKEIELLQAQKIDVEKHVQSQKREMRERMSEVTKQLLESYDIEDVRSRLSVE--- 1126
Cdd:TIGR04523 368 KQNEIEKLKKE----------NQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETiik 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1127 ------DLEhlNEDGELWFAYEGLKKATRVLESHFQSQKDCYEKEIEGLNFKVVHLSQEINHLQKLFREETDINESIRhe 1200
Cdd:TIGR04523 438 nnseikDLT--NQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVK-- 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1201 vtrltsenmmipDFKQQISELERQKQDLESRLKEQAEKI---EGKLEEPFSHLNRIREEERMQgraphpflravEAQSEm 1277
Cdd:TIGR04523 514 ------------DLTKKISSLKEKIEKLESEKKEKESKIsdlEDELNKDDFELKKENLEKEID-----------EKNKE- 569
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568961004 1278 hpegkerlvgaIHEPHEAIKFPKKqpeAEEEVESILQQEASrlslEKRDLEEELDMKDRMIRRLQDQVKTLTKTTEK 1354
Cdd:TIGR04523 570 -----------IEELKQTQKSLKK---KQEEKQELIDQKEK----EKKDLIKEIEEKEKKISSLEKELEKAKKENEK 628
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
866-1253 |
6.14e-10 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 64.55 E-value: 6.14e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 866 ARAWLARRRFQniRRFVlniqlTYRVQRLQKKLEDQNRENHGLVEKLTS--------LAAL--RVGDLEKVQKLEaELE- 934
Cdd:COG4913 501 ALRWVNRLHLR--GRLV-----YERVRTGLPDPERPRLDPDSLAGKLDFkphpfrawLEAElgRRFDYVCVDSPE-ELRr 572
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 935 --KAAT------HRHSYEEKGRRYRdtVEERL-------SKLQkhnaelELQRERAEqmLQEKSEELKEKMDKLTRQLFD 999
Cdd:COG4913 573 hpRAITragqvkGNGTRHEKDDRRR--IRSRYvlgfdnrAKLA------ALEAELAE--LEEELAEAEERLEALEAELDA 642
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1000 DVQKEEQQRLVLEKGFElktqayEKQIESLREEIKALKDERSQLhhqleegqvtsDRLKGEVARLskqaktisefEKEIE 1079
Cdd:COG4913 643 LQERREALQRLAEYSWD------EIDVASAEREIAELEAELERL-----------DASSDDLAAL----------EEQLE 695
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1080 LLQAQKIDVEKHVQSQKREMRERMSEVTKQLLESYDIEDVRSRLSVEDLEHLNEDGELWFAYEGLKKATRVLESHFQSQK 1159
Cdd:COG4913 696 ELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERI 775
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1160 DCYEKEIEGLNFKVVHLSQEINHLQKLFREETDI----NESIRHEVTRLTSENmmIPDFKQQISEL-----ERQKQDLES 1230
Cdd:COG4913 776 DALRARLNRAEEELERAMRAFNREWPAETADLDAdlesLPEYLALLDRLEEDG--LPEYEERFKELlnensIEFVADLLS 853
|
410 420
....*....|....*....|...
gi 568961004 1231 RLKEQAEKIEGKLEEpfshLNRI 1253
Cdd:COG4913 854 KLRRAIREIKERIDP----LNDS 872
|
|
| Myo5p-like_CBD_afadin |
cd15471 |
cargo binding domain of myosin 5-like of afadin; Afadin is an actin filament (F-actin) and ... |
1403-1707 |
6.39e-10 |
|
cargo binding domain of myosin 5-like of afadin; Afadin is an actin filament (F-actin) and Rap1 small G protein-binding protein, found in cadherin-based adherens junctions in epithelial cells, endothelial cells, and fibroblasts. It interacts with cell adhesion molecules and signaling molecules and plays a role in the formation of cell junctions, cell polarization, migration, survival, proliferation, and differentiation. Afadin is a multi domain protein, that contains beside a myosin5-like CBD, two Ras-associated domains, a forkhead-associated domain, a PDZ domain, three proline-rich domains, and an F-actin-binding domain.
Pssm-ID: 271255 Cd Length: 322 Bit Score: 62.71 E-value: 6.39e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1403 PAHILFMCVRYADSLND---------ANMLKSLMNSAINGIKHVVKEHFEDLEMLSFWLSNTCHFLNCLKQysgeeefmk 1473
Cdd:cd15471 25 PAYTLYLAARYRLSTHYrpeltpterAHKLTAFLNKIASLIQQVIQEQRNIAGALAFWMANASELLNFLKQ--------- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1474 ynspqqnknclnNFDLTEYR----QILSDVAIRIYHQFIIVMENNLQPIIVPGMLEYESLQGISGlkptgfrkrsssIDD 1549
Cdd:cd15471 96 ------------DRDLSAFSvqaqDVLAEAVQSAFSYLVRCLQEELERSLPAFLDSLVSLDDEPA------------IGD 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1550 TdaytmtsiLQQLSYFYSTMCQNGLDPEIVRQAVKQLFYLVGAVTLNSLLLRKD--MCSCRKGMQIRCNISFLEEWLKDK 1627
Cdd:cd15471 152 V--------LHTLSSAMRLLRRCRVNAALTIQLFSQLFHFINAWLFNSLVSNPDsgLCTRYWGKRLRQRLAHVEAWAERQ 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1628 NVQssLAKET-LEPLSQAAWLLQVKKTTDSDAKEIAQCCTSLSAVQIIKILNSYTPiDDFEKRVNPSFVRKVQALLNNRG 1706
Cdd:cd15471 224 GLE--LAADChLDRIVQAANLLTAPKYSAEDVANLSSTCFKLNSLQLRALLSHYQP-PPGEPPIPPDLIERVVRLAESQA 300
|
.
gi 568961004 1707 D 1707
Cdd:cd15471 301 D 301
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
923-1115 |
8.11e-10 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 61.09 E-value: 8.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 923 LEKVQKLEAELEKAATHRHSYEEKGRRYRDTVEERLSKLQKHNAELE-LQRERAEqmLQEKSEELKEKMDKLTRQLfDDV 1001
Cdd:COG1579 9 LLDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEdLEKEIKR--LELEIEEVEARIKKYEEQL-GNV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1002 QKEEQQrlvlekgfelktQAYEKQIESLREEIKALKDERSQLHHQLEEGQVTSDRLKGEVARLSKQ-AKTISEFEKEIEL 1080
Cdd:COG1579 86 RNNKEY------------EALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAElEEKKAELDEELAE 153
|
170 180 190
....*....|....*....|....*....|....*
gi 568961004 1081 LQAQkidvEKHVQSQKREMRERMSEvtkQLLESYD 1115
Cdd:COG1579 154 LEAE----LEELEAEREELAAKIPP---ELLALYE 181
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
887-1343 |
9.69e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.93 E-value: 9.69e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 887 LTYRVQRLQKKLEDQNRENHGLVEKLTSLAALRVGDLEKVQKLEAELEKAATHRHSYEEKGRRYRDT---VEERLSKLQK 963
Cdd:TIGR02169 411 LQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEydrVEKELSKLQR 490
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 964 HNAELELQRE---------RAEQMLQEKS---------------------------------------------EELKE- 988
Cdd:TIGR02169 491 ELAEAEAQARaseervrggRAVEEVLKASiqgvhgtvaqlgsvgeryataievaagnrlnnvvveddavakeaiELLKRr 570
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 989 -----------KMDKLTRQL-----------------FDD---------------VQKEE-------QQRLV------LE 1012
Cdd:TIGR02169 571 kagratflplnKMRDERRDLsilsedgvigfavdlveFDPkyepafkyvfgdtlvVEDIEaarrlmgKYRMVtlegelFE 650
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1013 K------------GFELKTQAYEKQIESLREEIKALKDERSQLHHQLEEGQVTSDRLKGEVARLSKQaktISEFEKEIEL 1080
Cdd:TIGR02169 651 KsgamtggsraprGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRK---IGEIEKEIEQ 727
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1081 LQAQkidvEKHVQSQKREMRERMSEvTKQLLESYDIEdvrsrlsvedLEHLNED-GELWFAYEGLKKATRVLESHF-QSQ 1158
Cdd:TIGR02169 728 LEQE----EEKLKERLEELEEDLSS-LEQEIENVKSE----------LKELEARiEELEEDLHKLEEALNDLEARLsHSR 792
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1159 KDCYEKEIEGLNFKVVHLSQEINH----LQKLFREETDINESIRHEVTRLTSENMMIPDFKQQISELERQKQDLESRLKE 1234
Cdd:TIGR02169 793 IPEIQAELSKLEEEVSRIEARLREieqkLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEE 872
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1235 qAEKIEGKLEEPFSHLNRIREEERMQGRAPHPFLRAVEAQSEMHPEGKERLVGAIHEPHEAIKfpkkqpEAEEEVESILQ 1314
Cdd:TIGR02169 873 -LEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELS------EIEDPKGEDEE 945
|
570 580
....*....|....*....|....*....
gi 568961004 1315 QEASRLSLEkrDLEEELDMKDRMIRRLQD 1343
Cdd:TIGR02169 946 IPEEELSLE--DVQAELQRVEEEIRALEP 972
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
879-1239 |
1.30e-09 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 62.86 E-value: 1.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 879 RRFVLNIQLTYRVQRLQKKLEDQNRENHGLVEKLTSLAALRV---GDLEKVQKLEAELEKAATHRHSYEE--KGRRYRDT 953
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEeleAELEELREELEKLEKLLQLLPLYQEleALEAELAE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 954 VEERLSKLQKHNAELElQRERAEQMLQEKSEELKEKMDKLTRQLFDDVQKEEQQrlvlekgFELKTQAYEKQIESLREEI 1033
Cdd:COG4717 144 LPERLEELEERLEELR-ELEEELEELEAELAELQEELEELLEQLSLATEEELQD-------LAEELEELQQRLAELEEEL 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1034 KALKDERSQLHHQLEEGQVTSDRLK---------------GEVARLSKQAKTISEFEKEI--------ELLQAQKIDVEK 1090
Cdd:COG4717 216 EEAQEELEELEEELEQLENELEAAAleerlkearlllliaAALLALLGLGGSLLSLILTIagvlflvlGLLALLFLLLAR 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1091 HVQSQKREMRERMSEVTKQLLESYDIEDVRSRLSVEDLEHLNEDGELWFAYEGLKKATRVLESHF-QSQKDCYEKEIEGL 1169
Cdd:COG4717 296 EKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEeELQLEELEQEIAAL 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1170 -NFKVVHLSQEINHLQKLFREETDINE---SIRHEVTRLTSENMMIPDF------KQQISELERQKQDLESRLKEQAEKI 1239
Cdd:COG4717 376 lAEAGVEDEEELRAALEQAEEYQELKEeleELEEQLEELLGELEELLEAldeeelEEELEELEEELEELEEELEELREEL 455
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
849-1185 |
1.38e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.16 E-value: 1.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 849 RYRKLLQEhkaviLQKYaRAWLARRRFQNIRRfvlniqltyRVQRLQKKLEDQNREnhglVEKLTslaalrvgdlEKVQK 928
Cdd:TIGR02169 212 RYQALLKE-----KREY-EGYELLKEKEALER---------QKEAIERQLASLEEE----LEKLT----------EEISE 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 929 LEAELEKAATHRhsyEEKGRRYRDTVEERLSKLQKHNAELELQRERAEQMLQEKSEELkEKMDKLTRQLFDDVQKEEQQR 1008
Cdd:TIGR02169 263 LEKRLEEIEQLL---EELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKEREL-EDAEERLAKLEAEIDKLLAEI 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1009 LVLEKgfelKTQAYEKQIESLREEIKALKDERSQLHHQLEEGQVTSDRLKGEVarlskqaktiSEFEKEIELLQaQKIDV 1088
Cdd:TIGR02169 339 EELER----EIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDEL----------KDYREKLEKLK-REINE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1089 EKHVQSQKREMRERMSEvtkqllesyDIEDVRSRLSVEDLEHLNEDGELWFAYEGLKKATRVLEShFQSQKDCYEKEIEG 1168
Cdd:TIGR02169 404 LKRELDRLQEELQRLSE---------ELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQ-LAADLSKYEQELYD 473
|
330
....*....|....*..
gi 568961004 1169 LNFKVVHLSQEINHLQK 1185
Cdd:TIGR02169 474 LKEEYDRVEKELSKLQR 490
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
891-1349 |
1.50e-09 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 63.27 E-value: 1.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 891 VQRLQKKLEDQNREnhgLVEKLTSLAALRVGDLEKVQKLEAELEKAATHRHSYEEKGRRYRDTVEERLSKLQkhNAELEL 970
Cdd:pfam01576 403 SEHKRKKLEGQLQE---LQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQ--DTQELL 477
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 971 QRE---------RAEQM------LQEKSEELKEKMDKLTR-------QLFDDVQKEEQQRLVLEKG-------------- 1014
Cdd:pfam01576 478 QEEtrqklnlstRLRQLedernsLQEQLEEEEEAKRNVERqlstlqaQLSDMKKKLEEDAGTLEALeegkkrlqreleal 557
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1015 ---FELKTQAY---EKQIESLREEIKAL---KDERSQLHHQLEEGQVTSDRLKGEVARLS----------------KQAK 1069
Cdd:pfam01576 558 tqqLEEKAAAYdklEKTKNRLQQELDDLlvdLDHQRQLVSNLEKKQKKFDQMLAEEKAISaryaeerdraeaeareKETR 637
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1070 TISeFEKEIELLQAQKIDVEKHVQSQKREMRERMS------------EVTKQLLESyDIEDVRSRLS-VEDLEHLNEDGE 1136
Cdd:pfam01576 638 ALS-LARALEEALEAKEELERTNKQLRAEMEDLVSskddvgknvhelERSKRALEQ-QVEEMKTQLEeLEDELQATEDAK 715
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1137 LwfayeglkkatrVLESHFQSQKDCYEKEIEGLNFKVvhlSQEINHLQKLFRE-ETDINESIRHEVTRLTSENMMIPDFK 1215
Cdd:pfam01576 716 L------------RLEVNMQALKAQFERDLQARDEQG---EEKRRQLVKQVRElEAELEDERKQRAQAVAAKKKLELDLK 780
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1216 qqisELERQKqDLESRLKEQAEKIEGKLEEPFSHLNRIREEermqGRAPHPFLRAVEAQSEMHPEGKERLVGAIHEPHEA 1295
Cdd:pfam01576 781 ----ELEAQI-DAANKGREEAVKQLKKLQAQMKDLQRELEE----ARASRDEILAQSKESEKKLKNLEAELLQLQEDLAA 851
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568961004 1296 IKFPKKQPEAE-----EEV------ESILQQEASRLSLEKRDLEEELD--------MKDRMiRRLQDQVKTLT 1349
Cdd:pfam01576 852 SERARRQAQQErdelaDEIasgasgKSALQDEKRRLEARIAQLEEELEeeqsntelLNDRL-RKSTLQVEQLT 923
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
886-1385 |
2.18e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 62.83 E-value: 2.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 886 QLTYRVQRLQKKLEDQNRenhgLVEKLTSLAALRVGDLE-KVQKLEAELEKAATHRhsyeekgRRYRDTVEERLSKLQKH 964
Cdd:pfam15921 82 EYSHQVKDLQRRLNESNE----LHEKQKFYLRQSVIDLQtKLQEMQMERDAMADIR-------RRESQSQEDLRNQLQNT 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 965 NAELELQRERAEQMLQEKSEELkEKMDKLTRQlFDDVQKEEQQRLVlekGFElktQAYEKQIESlreeikalKDERSQLH 1044
Cdd:pfam15921 151 VHELEAAKCLKEDMLEDSNTQI-EQLRKMMLS-HEGVLQEIRSILV---DFE---EASGKKIYE--------HDSMSTMH 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1045 HQ---------LEEGQVTSDRLKGEVARLSKQAKTI-SEFEKEIELLQAQKID-VEKHVQSQKRE---MRERMSEVTKQl 1110
Cdd:pfam15921 215 FRslgsaiskiLRELDTEISYLKGRIFPVEDQLEALkSESQNKIELLLQQHQDrIEQLISEHEVEitgLTEKASSARSQ- 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1111 lesydIEDVRSRLSVEDLEHLNEDGELWFAYEGLKKATRVLESHFQSQKDCYEKEIEGLNFKVVHLSQEINHlqklfree 1190
Cdd:pfam15921 294 -----ANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTE-------- 360
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1191 tdinesIRHEVTRLTSENMMIPDFKQQ-ISELERQKQDLeSRLKEQAEKI---EGKLEEPFSHLNRIREEERMQGRAPHP 1266
Cdd:pfam15921 361 ------ARTERDQFSQESGNLDDQLQKlLADLHKREKEL-SLEKEQNKRLwdrDTGNSITIDHLRRELDDRNMEVQRLEA 433
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1267 FLRAV--EAQSEMhpegkERLVGAIHEPHEAIKFPKKQPEAEEEVESILQQEASRLSLEKRDLEEELDMKDRMIRRLQDQ 1344
Cdd:pfam15921 434 LLKAMksECQGQM-----ERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEK 508
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 568961004 1345 VKTLTKTTEKANHVHlpsgSREYLGMLEYKK-EDEGKLIQNL 1385
Cdd:pfam15921 509 ERAIEATNAEITKLR----SRVDLKLQELQHlKNEGDHLRNV 546
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
960-1333 |
2.46e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.26 E-value: 2.46e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 960 KLQKHNAELELQR-----ERAEQMLqeksEELKEKMDKLtrqlfddvqkeEQQRLVLEKGFELKTQAYEKQIESLREEIK 1034
Cdd:COG1196 171 KERKEEAERKLEAteenlERLEDIL----GELERQLEPL-----------ERQAEKAERYRELKEELKELEAELLLLKLR 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1035 ALKDERSQLHHQLEEGQvtsdrlkgevARLSKQAKTISEFEKEIELLQAQKIDVEKHVQSQKREMRERMSEVTkQLLESY 1114
Cdd:COG1196 236 ELEAELEELEAELEELE----------AELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELA-RLEQDI 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1115 DIEDVRSRLSVEDLEHLNEDgelwfayegLKKATRVLESHfQSQKDCYEKEIEGLNFKVVHLSQEINHLQKLFREETDIN 1194
Cdd:COG1196 305 ARLEERRRELEERLEELEEE---------LAELEEELEEL-EEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1195 ESIRHEVTRLTSENMmipDFKQQISELERQKQDLESRLKEQAEKIEGKLEEpfshLNRIREEERMQGRAPHPFLRAVEAQ 1274
Cdd:COG1196 375 AEAEEELEELAEELL---EALRAAAELAAQLEELEEAEEALLERLERLEEE----LEELEEALAELEEEEEEEEEALEEA 447
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 568961004 1275 SEMHpEGKERLVGAIHEPHEAIKfpKKQPEAEEEVESILQQEASRLSLEKRDLEEELDM 1333
Cdd:COG1196 448 AEEE-AELEEEEEALLELLAELL--EEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
872-1113 |
3.77e-09 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 61.68 E-value: 3.77e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 872 RRRFQNIRRFVLNIQLTyRVQRLQKKLEDQNRENHGLVEKLTSLAALRVGDLEKVQKLEAELEKAATHRHSYEE-KGRRY 950
Cdd:pfam17380 359 KRELERIRQEEIAMEIS-RMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEaRQREV 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 951 RDTVEERLSKLQKHNAElELQRERAEQMLQEKSEELKEKMDKLTRQLFDDVQKEEQQRLVLEKGFELKTQAYekqiesLR 1030
Cdd:pfam17380 438 RRLEEERAREMERVRLE-EQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAM------IE 510
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1031 EEIKalkdeRSQLHHQLEEGQVTsdrlkgeVARLSKQAKTISEFEKEIELLQAQKIDVEKHVQSQKR---EMRERMSEVT 1107
Cdd:pfam17380 511 EERK-----RKLLEKEMEERQKA-------IYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERsrlEAMEREREMM 578
|
....*.
gi 568961004 1108 KQLLES 1113
Cdd:pfam17380 579 RQIVES 584
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
892-1357 |
1.22e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 60.37 E-value: 1.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 892 QRLQKKLEDQNRENHGLVEKLTslaalrvgDLEKVQKLEAELEKAathrhsyeeKGRRYRDTVEERLSKLQKHNAELELQ 971
Cdd:TIGR00618 246 TQKREAQEEQLKKQQLLKQLRA--------RIEELRAQEAVLEET---------QERINRARKAAPLAAHIKAVTQIEQQ 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 972 RERAEQMLQEKSEELKEKMDKLTRQLFDDVQKEEQQRLV--LEKGFELKTQAYEKQIESLREEIKALKDERS--QLHHQL 1047
Cdd:TIGR00618 309 AQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLqtLHSQEIHIRDAHEVATSIREISCQQHTLTQHihTLQQQK 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1048 EEGQVTSDRLKGEVARLSKQAKTISEFEKEIELLQAQKIDVEKHVQSQKR--EMRERMSEVTKQLLESYDIEDVRSRLSV 1125
Cdd:TIGR00618 389 TTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRyaELCAAAITCTAQCEKLEKIHLQESAQSL 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1126 EDLEHLNEDGELWFAYEGLKKATR--VLESHFQSQKDCYEKEIEGLNFKVVHLSQEIN--HLQKLFREETDINESIRHEV 1201
Cdd:TIGR00618 469 KEREQQLQTKEQIHLQETRKKAVVlaRLLELQEEPCPLCGSCIHPNPARQDIDNPGPLtrRMQRGEQTYAQLETSEEDVY 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1202 TRLTSENMMIPDFKQQISELERQKQDLES---RLKEQAEKIEGKLEEPFSHLNRIREEERMQGRAPHPFLRavEAQSEMH 1278
Cdd:TIGR00618 549 HQLTSERKQRASLKEQMQEIQQSFSILTQcdnRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLR--KLQPEQD 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1279 PEGKerlvgAIHEPHEAIKFPKKQPEAEEEVESILQQEASRLSLEKRDLEEE-LDMKDRMIRRLQDQVKTLTKTTEKANH 1357
Cdd:TIGR00618 627 LQDV-----RLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKElLASRQLALQKMQSEKEQLTYWKEMLAQ 701
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1016-1356 |
1.33e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.07 E-value: 1.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1016 ELKTQAYEKQIESLREEIKALKDERSQLHHQLEEGQVTSDRLKGEVARLSKQaktISEFEKEIELLQAQKIDVEKHVQSQ 1095
Cdd:TIGR02168 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD---LARLEAEVEQLEERIAQLSKELTEL 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1096 KREMRERMSEVTKQLLESYDIEDVRSRLSvEDLEHLNEDGELW-FAYEGLKKATRVLESHFQSQkdcyEKEIEGLNFKVV 1174
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELE-AQIEQLKEELKALrEALDELRAELTLLNEEAANL----RERLESLERRIA 834
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1175 HLSQEINHLQKLFREETDINESIRHEVTrltsenmmipDFKQQISELERQKQDLESRLKEQAEKIEGKLEEPFSHLNRIR 1254
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSEDIESLAAEIE----------ELEELIEELESELEALLNERASLEEALALLRSELEELSEELR 904
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1255 --EEERMQGRAPHPFLRAVEAQSEMHPEG--------KERL-VGAIHEPHEAIKFPKKQP----EAEEEVESiLQQEASR 1319
Cdd:TIGR02168 905 elESKRSELRRELEELREKLAQLELRLEGlevridnlQERLsEEYSLTLEEAEALENKIEddeeEARRRLKR-LENKIKE 983
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 568961004 1320 L------SLEK-RDLEEELDMKDRMIRRLQDQVKTLTKTTEKAN 1356
Cdd:TIGR02168 984 LgpvnlaAIEEyEELKERYDFLTAQKEDLTEAKETLEEAIEEID 1027
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
848-1239 |
1.36e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 59.78 E-value: 1.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 848 RRYRKLLQEHKAV---ILQKYARAWLARRRFQNIRRFVLNIQLTYRVQRLQKKLEDQNRENHGLVEKLTSLAALRvgdlE 924
Cdd:COG4717 88 EEYAELQEELEELeeeLEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELE----E 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 925 KVQKLEAELEKAATHRhsyEEKGRRYRDTVEERLSKLQKHNAELELQRERAEQML---QEKSEELKEKMDKLTRQLFDDV 1001
Cdd:COG4717 164 ELEELEAELAELQEEL---EELLEQLSLATEEELQDLAEELEELQQRLAELEEELeeaQEELEELEEELEQLENELEAAA 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1002 QKE---EQQRLVLEKGFELKTQAYEKQIESLREEIKA---------------LKDERSQLHHQLEEGQVTSDRLKGEVAR 1063
Cdd:COG4717 241 LEErlkEARLLLLIAAALLALLGLGGSLLSLILTIAGvlflvlgllallfllLAREKASLGKEAEELQALPALEELEEEE 320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1064 LSKQAKTIsEFEKEIELLQAQK-IDVEKHVQSQKREMRERMSEVTKQLLESyDIEDVRSRLSVEDLEHLNEDGELWFAYE 1142
Cdd:COG4717 321 LEELLAAL-GLPPDLSPEELLElLDRIEELQELLREAEELEEELQLEELEQ-EIAALLAEAGVEDEEELRAALEQAEEYQ 398
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1143 GLKKATRVLESHFQSQKDCYEKEIEGLNFKvvHLSQEINHLQKLFREETDINESIRHEVTRLTSENMMIPDfKQQISELE 1222
Cdd:COG4717 399 ELKEELEELEEQLEELLGELEELLEALDEE--ELEEELEELEEELEELEEELEELREELAELEAELEQLEE-DGELAELL 475
|
410
....*....|....*..
gi 568961004 1223 RQKQDLESRLKEQAEKI 1239
Cdd:COG4717 476 QELEELKAELRELAEEW 492
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
980-1256 |
2.14e-08 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 58.01 E-value: 2.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 980 QEKsEELKEKMDKLTRQLfDDVQKEEQQRLVLEKGFELKTQ-----------AYEKQIESLREEIKALKDERSQLHHQLE 1048
Cdd:pfam00038 1 NEK-EQLQELNDRLASYI-DKVRFLEQQNKLLETKISELRQkkgaepsrlysLYEKEIEDLRRQLDTLTVERARLQLELD 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1049 EGQVTSDRLKgevARLSKQAKTISEFEKEIELLQAQ-------KIDVEKHVQS-------QKREMRERMSEVTKQLLESY 1114
Cdd:pfam00038 79 NLRLAAEDFR---QKYEDELNLRTSAENDLVGLRKDldeatlaRVDLEAKIESlkeelafLKKNHEEEVRELQAQVSDTQ 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1115 DIEDVRSRLSVEDLEHLNEdgeLWFAYEGL-KKATRVLESHFQSQkdcYEKeieglnfkvvhLSQEIN-HLQKLFREETD 1192
Cdd:pfam00038 156 VNVEMDAARKLDLTSALAE---IRAQYEEIaAKNREEAEEWYQSK---LEE-----------LQQAAArNGDALRSAKEE 218
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568961004 1193 INESiRHEVTRLTSEnmmIPDFKQQISELERQKQDLESRLKEQAEKIEGKLEEPFSHLNRIREE 1256
Cdd:pfam00038 219 ITEL-RRTIQSLEIE---LQSLKKQKASLERQLAETEERYELQLADYQELISELEAELQETRQE 278
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
968-1347 |
2.44e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 59.28 E-value: 2.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 968 LELQRERA-------EQMLQEKSEELkekmDKLTRQLFDDVQKEEQQRLvlekgfelktQAYEKQIESLREEIKALKDER 1040
Cdd:PRK02224 164 LEEYRERAsdarlgvERVLSDQRGSL----DQLKAQIEEKEEKDLHERL----------NGLESELAELDEEIERYEEQR 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1041 SQLHHQLEEGQVTsdrlkgeVARLSKQAKTISEFEKEIELLQAQKIDVEKhvqsQKREMRERMSEVTKQLLE-SYDIEDV 1119
Cdd:PRK02224 230 EQARETRDEADEV-------LEEHEERREELETLEAEIEDLRETIAETER----EREELAEEVRDLRERLEElEEERDDL 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1120 RSRLSVEDL--EHLNEDGElwfAYEGLKKATR-VLESHFQSQKDcYEKEIEGLNFKVVHLSQEINHLqklfREETDINES 1196
Cdd:PRK02224 299 LAEAGLDDAdaEAVEARRE---ELEDRDEELRdRLEECRVAAQA-HNEEAESLREDADDLEERAEEL----REEAAELES 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1197 irhevtRLTSENMMIPDFKQQISELERQKQDLESRLK---EQAEKIEGKLEEPFSHLNRIREEERMqgraphpfLRAVEA 1273
Cdd:PRK02224 371 ------ELEEAREAVEDRREEIEELEEEIEELRERFGdapVDLGNAEDFLEELREERDELREREAE--------LEATLR 436
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568961004 1274 QSEMHPEGKERLVgaihephEAIKFPK-KQP-EAEEEVESILQQEASRLSLEKR--DLEEELDMKDRMIRRLQDQVKT 1347
Cdd:PRK02224 437 TARERVEEAEALL-------EAGKCPEcGQPvEGSPHVETIEEDRERVEELEAEleDLEEEVEEVEERLERAEDLVEA 507
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
866-1245 |
2.50e-08 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 59.20 E-value: 2.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 866 ARAWLarrRFQNIRRFVLNIQLTYRvQRLQKKLEDQNRENHGLVEKLTSLAALRvgdlEKVQKLEAELEKAATHRHS--- 942
Cdd:PRK04863 271 AADYM---RHANERRVHLEEALELR-RELYTSRRQLAAEQYRLVEMARELAELN----EAESDLEQDYQAASDHLNLvqt 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 943 ---YEEKGRRYRDTVEERLSKLQKHNAELELQRERAEqMLQEKSEELKEKMDKLTRQLFDDVQK-EEQQRLVLEkgFELK 1018
Cdd:PRK04863 343 alrQQEKIERYQADLEELEERLEEQNEVVEEADEQQE-ENEARAEAAEEEVDELKSQLADYQQAlDVQQTRAIQ--YQQA 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1019 TQAYEKQ-----------------IESLREEIKALKDERSQLHHQLEEGQVTSD----------RLKGEVARL--SKQAK 1069
Cdd:PRK04863 420 VQALERAkqlcglpdltadnaedwLEEFQAKEQEATEELLSLEQKLSVAQAAHSqfeqayqlvrKIAGEVSRSeaWDVAR 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1070 -TISEFEKEIEL------LQAQKIDVEKHVQSQKREMReRMSEVTKQLLESYDIEDvrsrlsveDLEHLNEDGElwfaye 1142
Cdd:PRK04863 500 eLLRRLREQRHLaeqlqqLRMRLSELEQRLRQQQRAER-LLAEFCKRLGKNLDDED--------ELEQLQEELE------ 564
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1143 glkkatRVLESHFQSQKDCYEKEIEgLNFKVVHLSQEINHLQKL---FREETDINESIRHEV--TRLTSENMMipDFKQQ 1217
Cdd:PRK04863 565 ------ARLESLSESVSEARERRMA-LRQQLEQLQARIQRLAARapaWLAAQDALARLREQSgeEFEDSQDVT--EYMQQ 635
|
410 420
....*....|....*....|....*...
gi 568961004 1218 ISELERQKQDLESRLKEQAEKIEGKLEE 1245
Cdd:PRK04863 636 LLERERELTVERDELAARKQALDEEIER 663
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
864-1232 |
3.11e-08 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 58.60 E-value: 3.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 864 KYARAWLARRRFQNIRRFVLNIQLTYRVQRLQKKLE--DQNRENHGLVEKLTSLAALRvgDLEKVQKL-EAELEKAAThr 940
Cdd:pfam17380 259 RYNGQTMTENEFLNQLLHIVQHQKAVSERQQQEKFEkmEQERLRQEKEEKAREVERRR--KLEEAEKArQAEMDRQAA-- 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 941 hSYEEKGRRYRDTvEERLSKLQKHNAELELQRERAEQMLQEKSeelkeKMDKLTRQLFDDVQKEEQQRLVLEKGFELKTQ 1020
Cdd:pfam17380 335 -IYAEQERMAMER-ERELERIRQEERKRELERIRQEEIAMEIS-----RMRELERLQMERQQKNERVRQELEAARKVKIL 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1021 AYEKQieslrEEIKALKDERSQLHHQLEEG-QVTSDRLKGEVAR-LSKQAKTISEFEKEIELLQAQKIDVEKHVQSQKRE 1098
Cdd:pfam17380 408 EEERQ-----RKIQQQKVEMEQIRAEQEEArQREVRRLEEERAReMERVRLEEQERQQQVERLRQQEEERKRKKLELEKE 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1099 MRER--MSEVTKQLLESyDIEDVRSRLSVED-----LEHLNEDGELWFAYEglkKATRVLESHFQSQKDCYEKeiEGLNF 1171
Cdd:pfam17380 483 KRDRkrAEEQRRKILEK-ELEERKQAMIEEErkrklLEKEMEERQKAIYEE---ERRREAEEERRKQQEMEER--RRIQE 556
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568961004 1172 KVVHLSQEINHLQKLFREETDI-----NESIRHEVTRLTSENMMIPDFKQQISELerQKQDLESRL 1232
Cdd:pfam17380 557 QMRKATEERSRLEAMEREREMMrqiveSEKARAEYEATTPITTIKPIYRPRISEY--QPPDVESHM 620
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
893-1128 |
3.17e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.93 E-value: 3.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 893 RLQKKLEDQNRENHGLVEKLtSLAALRVGDLE-KVQKLEAELEKAATHRHSYEEKGRRY---RDTVEERLSKLQkhnAEL 968
Cdd:TIGR02169 291 RVKEKIGELEAEIASLERSI-AEKERELEDAEeRLAKLEAEIDKLLAEIEELEREIEEErkrRDKLTEEYAELK---EEL 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 969 ELQRERAEQM------LQEKSEELKEKMDKLTRQLFDdvQKEEQQRLVLEKgfelktQAYEKQIESLREEIKALKDERSQ 1042
Cdd:TIGR02169 367 EDLRAELEEVdkefaeTRDELKDYREKLEKLKREINE--LKRELDRLQEEL------QRLSEELADLNAAIAGIEAKINE 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1043 LHHQLEEGQvtsDRLKGEVARLSKQAKTISEFEKEIELLQAQKIDVEKHVQSQKREMRErmSEVTKQLLESYdiedVRSR 1122
Cdd:TIGR02169 439 LEEEKEDKA---LEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAE--AEAQARASEER----VRGG 509
|
....*.
gi 568961004 1123 LSVEDL 1128
Cdd:TIGR02169 510 RAVEEV 515
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
846-1115 |
3.18e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 3.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 846 ARRRYRKLLQEHKAVILQKYARAWLARRRFQNIRRFVLNI-----QLTYRVQRLQKKLEDQNRENHGLVEKLTSLAALRV 920
Cdd:TIGR02168 699 ALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLeaeveQLEERIAQLSKELTELEAEIEELEERLEEAEEELA 778
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 921 GDLEKVQKLEAELEKA----ATHRHSYEEKGRRYRDT------VEERLSKLQKHNAELELQRERAEQMLQEKSE------ 984
Cdd:TIGR02168 779 EAEAEIEELEAQIEQLkeelKALREALDELRAELTLLneeaanLRERLESLERRIAATERRLEDLEEQIEELSEdiesla 858
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 985 ----ELKEKMDKLTRQL---FDDVQKEEQQRLVLEKGFELKT---QAYEKQIESLREEIKALKDERSQLHHQLEEGQVTS 1054
Cdd:TIGR02168 859 aeieELEELIEELESELealLNERASLEEALALLRSELEELSeelRELESKRSELRRELEELREKLAQLELRLEGLEVRI 938
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1055 DRLKG-----------------------------EVARLSKQAK--------TISEFEKEIE---LLQAQKIDVEKHVQS 1094
Cdd:TIGR02168 939 DNLQErlseeysltleeaealenkieddeeearrRLKRLENKIKelgpvnlaAIEEYEELKErydFLTAQKEDLTEAKET 1018
|
330 340
....*....|....*....|.
gi 568961004 1095 QKREMRERMSEVTKQLLESYD 1115
Cdd:TIGR02168 1019 LEEAIEEIDREARERFKDTFD 1039
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
924-1383 |
3.35e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 59.00 E-value: 3.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 924 EKVQKLEAELEKAATHRHSYEEKGRRYRDTVEERLSKLQKHNAELELQRERAEQMlQEKSEELKEKMDKLTRQLFDDVQK 1003
Cdd:PTZ00121 1315 KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAA-EKKKEEAKKKADAAKKKAEEKKKA 1393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1004 EEQQRLVLE---KGFELKTQAYE--------KQIESLR--EEIKALKDER---SQLHHQLEEGQVTSDRLKG-------- 1059
Cdd:PTZ00121 1394 DEAKKKAEEdkkKADELKKAAAAkkkadeakKKAEEKKkaDEAKKKAEEAkkaDEAKKKAEEAKKAEEAKKKaeeakkad 1473
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1060 EVARLSKQAKTISEFEKEIELLQAQKIDVEKHVQSQKREMRERMSEVTKQLLESYDIEDVRSRLSVEDLEHLNEDGELWF 1139
Cdd:PTZ00121 1474 EAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKK 1553
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1140 AYEgLKKATRVLESHfQSQKDCYEKEIEGLNFKVVHLSQE--INHLQKLFREETDIN--ESIRHEVTRLTSENMMIPDFK 1215
Cdd:PTZ00121 1554 AEE-LKKAEEKKKAE-EAKKAEEDKNMALRKAEEAKKAEEarIEEVMKLYEEEKKMKaeEAKKAEEAKIKAEELKKAEEE 1631
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1216 QQISELERQKQDLESRLKEQAEKIEGKLEEPFSHLNRIREEERMqgraphpflRAVEAQSEMHPEGK--ERLVGAIHEPH 1293
Cdd:PTZ00121 1632 KKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKK---------KAEEAKKAEEDEKKaaEALKKEAEEAK 1702
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1294 EAIKFPKKQPE---------AEEEVESILQQEASRLSLEKRDLEEELDMKDRMIRRLQDQVKTLTKTTEKANHvhlpsgS 1364
Cdd:PTZ00121 1703 KAEELKKKEAEekkkaeelkKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRK------E 1776
|
490
....*....|....*....
gi 568961004 1365 REYLGMLEYKKEDEGKLIQ 1383
Cdd:PTZ00121 1777 KEAVIEEELDEEDEKRRME 1795
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
896-1112 |
5.32e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.15 E-value: 5.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 896 KKLEDQNRENHGLVEKLTSLAALRVG---DLEKVQKLEAEL-----------EKAATHRHSYEEKGRRYRDTVEERLSKL 961
Cdd:PRK03918 518 EELEKKAEEYEKLKEKLIKLKGEIKSlkkELEKLEELKKKLaelekkldeleEELAELLKELEELGFESVEELEERLKEL 597
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 962 QK-HNAELELQRerAEQMLQEKSEELKEKMDKLTrQLFDDVQKEEQQRLVLEKGFELKTQAY--------EKQIESLREE 1032
Cdd:PRK03918 598 EPfYNEYLELKD--AEKELEREEKELKKLEEELD-KAFEELAETEKRLEELRKELEELEKKYseeeyeelREEYLELSRE 674
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1033 IKALKDERSQLHHQLEEGQVTSDRLKGEVARLSKQAKTISEFEKEIELLQAQKIDVEKHVQSQKREMRERMSEVTKQLLE 1112
Cdd:PRK03918 675 LAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKERALSKVGEIASEIFE 754
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
890-1259 |
6.70e-08 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 57.21 E-value: 6.70e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 890 RVQRLQKKLEDQNRENHGLVEKLTSLAALRVGDLE--KVQKLEAELEKAATHRH--SYEEKGRRYRDTVEErLSKLQKhn 965
Cdd:pfam07888 28 RAELLQNRLEECLQERAELLQAQEAANRQREKEKEryKRDREQWERQRRELESRvaELKEELRQSREKHEE-LEEKYK-- 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 966 aelELQRERAEqMLQEKSEELKEKMDKLTR--QLFDDVQKEEQQRLVLEKGFELKTQAYEKQIESLREEikalKDERSQL 1043
Cdd:pfam07888 105 ---ELSASSEE-LSEEKDALLAQRAAHEARirELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEE----EAERKQL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1044 HHQLEEGQVTSDRLKGE--VAR--LSKQAKTISEFEKEIELLQ-----AQKIDVE-KHVQSQKREMRER--MSEVTKQLL 1111
Cdd:pfam07888 177 QAKLQQTEEELRSLSKEfqELRnsLAQRDTQVLQLQDTITTLTqklttAHRKEAEnEALLEELRSLQERlnASERKVEGL 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1112 ESyDIEDV---RSRLSVEDLEHLNEDGELWFAYEGLKKATRVLESHFQSQKDCYEKEIEGLNFKVVHLSQEINHLQKLFR 1188
Cdd:pfam07888 257 GE-ELSSMaaqRDRTQAELHQARLQAAQLTLQLADASLALREGRARWAQERETLQQSAEADKDRIEKLSAELQRLEERLQ 335
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568961004 1189 EETDINESIRHEVTRLTSENMMipdfkqQISELERQKQDLESRLK-EQAEKiEGKLEEPFSHLNRIRE-EERM 1259
Cdd:pfam07888 336 EERMEREKLEVELGREKDCNRV------QLSESRRELQELKASLRvAQKEK-EQLQAEKQELLEYIRQlEQRL 401
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
898-1349 |
9.43e-08 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 57.49 E-value: 9.43e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 898 LEDQN----RENHGLVEKLTSLAALRVGDLEKV---QKLEAELEKAATH---RHSYEEKGRRYRDTVEERL----SKLQK 963
Cdd:pfam01576 143 LEDQNsklsKERKLLEERISEFTSNLAEEEEKAkslSKLKNKHEAMISDleeRLKKEEKGRQELEKAKRKLegesTDLQE 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 964 HNAELELQRERAEQMLQEKSEELKEKMDKLTR------QLFDDVQKEEQQRLVLEKGFELKTQA---YEKQIESLREEIK 1034
Cdd:pfam01576 223 QIAELQAQIAELRAQLAKKEEELQAALARLEEetaqknNALKKIRELEAQISELQEDLESERAArnkAEKQRRDLGEELE 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1035 ALKDErsqlhhqLEEGQVTSdrlkgevarlSKQAKTISEFEKEIELLQAQKIDVEKHVQSQKREMRERMSEVTKQLLESY 1114
Cdd:pfam01576 303 ALKTE-------LEDTLDTT----------AAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQL 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1115 DiEDVRSRLSVEDLEHL--NEDGELWFAYEGLKKAT-------RVLESH---FQSQKDCYEKEIEGLNFKVVHLSQEINH 1182
Cdd:pfam01576 366 E-QAKRNKANLEKAKQAleSENAELQAELRTLQQAKqdsehkrKKLEGQlqeLQARLSESERQRAELAEKLSKLQSELES 444
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1183 LQKLFREETDINESIRHEVTRLTSEnmmIPDFKQQISELERQKQDLESRLKeQAEKIEGKLEEpfshlnriREEERMQGR 1262
Cdd:pfam01576 445 VSSLLNEAEGKNIKLSKDVSSLESQ---LQDTQELLQEETRQKLNLSTRLR-QLEDERNSLQE--------QLEEEEEAK 512
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1263 aphpflRAVEAQSEMHPEGKERLVGAIHEPHEAIkfpkkqpEAEEEVESILQQEASRLSLEKRDLEEELDMKDRMIRRLQ 1342
Cdd:pfam01576 513 ------RNVERQLSTLQAQLSDMKKKLEEDAGTL-------EALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQ 579
|
....*..
gi 568961004 1343 DQVKTLT 1349
Cdd:pfam01576 580 QELDDLL 586
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
847-1332 |
1.20e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 56.90 E-value: 1.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 847 RRRYRKLLQEHKAVILQKYARA------------WLARRRFQNIRRFVLNIQLtyRVQRLQKKLEDQNRENHGLVEKLTS 914
Cdd:TIGR00618 97 TRSHRKTEQPEQLYLEQKKGRGrilaakkseteeVIHDLLKLDYKTFTRVVLL--PQGEFAQFLKAKSKEKKELLMNLFP 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 915 L-----AALRVGDLEKVQKLEAELEKAathRHSYEEkgrryrDTVEERLSKLQKHNAELElqreRAEQMLQEKSEELKEK 989
Cdd:TIGR00618 175 LdqytqLALMEFAKKKSLHGKAELLTL---RSQLLT------LCTPCMPDTYHERKQVLE----KELKHLREALQQTQQS 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 990 MDKLTRQLFDDVQKEEQQRLVLEKGFELKT-QAYEKQIESLREEI-------------KALKDERSQLHHQLEEGQVTSD 1055
Cdd:TIGR00618 242 HAYLTQKREAQEEQLKKQQLLKQLRARIEElRAQEAVLEETQERInrarkaaplaahiKAVTQIEQQAQRIHTELQSKMR 321
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1056 RLKGEVARLSKQAKTISEFEKEIELLQA-----QKIDVEKHVQSQKREMRERMSEVT---KQLLESYDIEDVRSRLSVED 1127
Cdd:TIGR00618 322 SRAKLLMKRAAHVKQQSSIEEQRRLLQTlhsqeIHIRDAHEVATSIREISCQQHTLTqhiHTLQQQKTTLTQKLQSLCKE 401
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1128 LEHLNEdgelwfayEGLKKATRVL-ESHFQSQKDCYEKEIEglnfkvvhLSQEINHLQKLFREEtdinesirhEVTRLTS 1206
Cdd:TIGR00618 402 LDILQR--------EQATIDTRTSaFRDLQGQLAHAKKQQE--------LQQRYAELCAAAITC---------TAQCEKL 456
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1207 ENMMIPDFKQQISELERQKQDLESRLKEQAEKieGKLEEPFshLNRIREEER-MQGRAPHPflrAVEAQSEMHPEGKERL 1285
Cdd:TIGR00618 457 EKIHLQESAQSLKEREQQLQTKEQIHLQETRK--KAVVLAR--LLELQEEPCpLCGSCIHP---NPARQDIDNPGPLTRR 529
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 568961004 1286 VGAIHEPHeaikfpKKQPEAEEEVESILQQEASRLSLEKRDLEEELD 1332
Cdd:TIGR00618 530 MQRGEQTY------AQLETSEEDVYHQLTSERKQRASLKEQMQEIQQ 570
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
886-1073 |
1.34e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.93 E-value: 1.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 886 QLTYRVQRLQKKLEDQNRENHGLVEKLTSL------AALRVGDLEK-VQKLEAELEKAATHRHSYEEKGRRYRDTVEERL 958
Cdd:COG4942 31 QLQQEIAELEKELAALKKEEKALLKQLAALerriaaLARRIRALEQeLAALEAELAELEKEIAELRAELEAQKEELAELL 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 959 SKLQKH----------NAELELQRERAEQMLQEKSEELKEKMDKLTRQLFD------DVQKEEQQRLVLEKGFELKTQAY 1022
Cdd:COG4942 111 RALYRLgrqpplalllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAElaalraELEAERAELEALLAELEEERAAL 190
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 568961004 1023 EKQIESLREEIKALKDERSQLHHQLEEGQVTSDRLKGEVARLSKQAKTISE 1073
Cdd:COG4942 191 EALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
884-1347 |
1.49e-07 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 56.29 E-value: 1.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 884 NIQLTYRVQRLQKKLEDQNRENHGLVEKLTSLaalrvgdlekvQKLEAELEKAATHRHSYEEKGRRYRDTVEERLSKLQK 963
Cdd:pfam05557 50 NQELQKRIRLLEKREAEAEEALREQAELNRLK-----------KKYLEALNKKLNEKESQLADAREVISCLKNELSELRR 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 964 --HNAELELQRERAE-QMLQEKSEELKEKMDKLTrQLFDDVQKEEQQRLVlekgFELKTQAYEKQIESLREEIKALKDER 1040
Cdd:pfam05557 119 qiQRAELELQSTNSElEELQERLDLLKAKASEAE-QLRQNLEKQQSSLAE----AEQRIKELEFEIQSQEQDSEIVKNSK 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1041 SQLhHQLEEGQVTSDRLKGEVARLSKQAKTISEFEKEIELLQ----------AQKIDVEKHVQSQKREMRERMSEVTKQL 1110
Cdd:pfam05557 194 SEL-ARIPELEKELERLREHNKHLNENIENKLLLKEEVEDLKrklereekyrEEAATLELEKEKLEQELQSWVKLAQDTG 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1111 LESYDIEDVRSR---LSVEDLEHLNEDGELWFAYEGLKKATRVLeshfQSQKDCYEKEIEGLNFKVVHLSQEINHLQK-- 1185
Cdd:pfam05557 273 LNLRSPEDLSRRieqLQQREIVLKEENSSLTSSARQLEKARREL----EQELAQYLKKIEDLNKKLKRHKALVRRLQRrv 348
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1186 -LFREETDINESIRHEVTRLTSENMMIPDFKQQISELERQKQDLESRLKEQAEKIEGKLEEPFSHLNRIREEER-MQGra 1263
Cdd:pfam05557 349 lLLTKERDGYRAILESYDKELTMSNYSPQLLERIEEAEDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLEReLQA-- 426
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1264 phpfLRAVEAQSEmhpegkerlvgaihepheaikfpkkQPEAEEEVESiLQQEASRLSLEKRDLEE-----ELDMKDRMI 1338
Cdd:pfam05557 427 ----LRQQESLAD-------------------------PSYSKEEVDS-LRRKLETLELERQRLREqknelEMELERRCL 476
|
....*....
gi 568961004 1339 RRLQDQVKT 1347
Cdd:pfam05557 477 QGDYDPKKT 485
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
874-1245 |
1.67e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 56.50 E-value: 1.67e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 874 RFQNIRRFVLNIQLTYRvQRLQKKLEDQNRENHGLVEKLTSLAALrvGDLEKvqKLEAELEKAATH--------RHsyEE 945
Cdd:COG3096 275 RHANERRELSERALELR-RELFGARRQLAEEQYRLVEMARELEEL--SARES--DLEQDYQAASDHlnlvqtalRQ--QE 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 946 KGRRYRDTVEERLSKLQKHNAELElqrERAEQ--MLQEKSEELKEKMDKLTRQLfDDVQK--EEQQRLVLekgfelktqA 1021
Cdd:COG3096 348 KIERYQEDLEELTERLEEQEEVVE---EAAEQlaEAEARLEAAEEEVDSLKSQL-ADYQQalDVQQTRAI---------Q 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1022 YEKQIESLRE----------EIKALKDErsQLHHQLEEGQVTSDRLKGEvARLSKQAKTISEFEKEIELLQAQKIDVEK- 1090
Cdd:COG3096 415 YQQAVQALEKaralcglpdlTPENAEDY--LAAFRAKEQQATEEVLELE-QKLSVADAARRQFEKAYELVCKIAGEVERs 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1091 ------------------------HVQSQKREMRERMSEVTK--QLLESYDIEDVRSRLSVEDLEHLnedgelwfayegL 1144
Cdd:COG3096 492 qawqtarellrryrsqqalaqrlqQLRAQLAELEQRLRQQQNaeRLLEEFCQRIGQQLDAAEELEEL------------L 559
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1145 KKATRVLESHFQSQKDCYEKEIEgLNFKVVHLSQEINHLQK---LFREETDINESIRHEV-TRLTSENMMIpDFKQQISE 1220
Cdd:COG3096 560 AELEAQLEELEEQAAEAVEQRSE-LRQQLEQLRARIKELAArapAWLAAQDALERLREQSgEALADSQEVT-AAMQQLLE 637
|
410 420
....*....|....*....|....*
gi 568961004 1221 LERQKQDLESRLKEQAEKIEGKLEE 1245
Cdd:COG3096 638 REREATVERDELAARKQALESQIER 662
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
955-1322 |
1.76e-07 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 56.37 E-value: 1.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 955 EERLSKLQKHNAELELQRERAEQMLQEKSEELKEKMD-KLT-----RQLFDDVQKEEQQRLVLEKGFE-LKTQAY--EKQ 1025
Cdd:pfam10174 337 EQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEeKSTlageiRDLKDMLDVKERKINVLQKKIEnLQEQLRdkDKQ 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1026 IESLREEIKALKDERSQ-------LHHQLEEGQVTSDRLKGEVARLSKQ--------AKTISEFEKEIELLQAQK----- 1085
Cdd:pfam10174 417 LAGLKERVKSLQTDSSNtdtalttLEEALSEKERIIERLKEQREREDRErleeleslKKENKDLKEKVSALQPELtekes 496
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1086 --IDVEKHVQSQKREM-----------------RERMSEVTKQLLESYDIE-------DVRSRLSVEDLE---HLNEDGE 1136
Cdd:pfam10174 497 slIDLKEHASSLASSGlkkdsklksleiaveqkKEECSKLENQLKKAHNAEeavrtnpEINDRIRLLEQEvarYKEESGK 576
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1137 LWFAYEGLKKATRVLEshfqSQKDCYEKEIEGLNFKVVHLSQEIN----HLQKLFREETDINESIRHEVTRLTsENMMIP 1212
Cdd:pfam10174 577 AQAEVERLLGILREVE----NEKNDKDKKIAELESLTLRQMKEQNkkvaNIKHGQQEMKKKGAQLLEEARRRE-DNLADN 651
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1213 DFKQQISEL----ERQKQDLESrLKEQAEKIEGKLEEPFSHLNRIREEERMQgraphpflraVEAQSEMHpegKERLVGA 1288
Cdd:pfam10174 652 SQQLQLEELmgalEKTRQELDA-TKARLSSTQQSLAEKDGHLTNLRAERRKQ----------LEEILEMK---QEALLAA 717
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 568961004 1289 IHEPHEAIKF-----PKKQPEAEEE----------VESILQQEASRLSL 1322
Cdd:pfam10174 718 ISEKDANIALlelssSKKKKTQEEVmalkrekdrlVHQLKQQTQNRMKL 766
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1071-1385 |
1.84e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.22 E-value: 1.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1071 ISEFEKEIELLQAQKIDVEKHvqsqkREMRErmsevtkqllesyDIEDVRSRLSVEDLEHLNEdgELWFAYEGLKKATRV 1150
Cdd:TIGR02168 195 LNELERQLKSLERQAEKAERY-----KELKA-------------ELRELELALLVLRLEELRE--ELEELQEELKEAEEE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1151 LESHfQSQKDCYEKEIEGLNFKVVHLSQEINHLQKLFREetdinesirhevtrltsenmmipdFKQQISELERQKQDLES 1230
Cdd:TIGR02168 255 LEEL-TAELQELEEKLEELRLEVSELEEEIEELQKELYA------------------------LANEISRLEQQKQILRE 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1231 RLK---EQAEKIEGKLEEPFSHLNRIREEermqgraphpfLRAVEAQSEMHPEGKERLVGAIHEPHEAIKFPKKQPEA-E 1306
Cdd:TIGR02168 310 RLAnleRQLEELEAQLEELESKLDELAEE-----------LAELEEKLEELKEELESLEAELEELEAELEELESRLEElE 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1307 EEVESI------LQQEASRLSLEKRDLEEELDMKDRMIRRLQDQVKTLTKTTEKANHVHLPSGSREYLGMLEYKKEDEGK 1380
Cdd:TIGR02168 379 EQLETLrskvaqLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELER 458
|
....*
gi 568961004 1381 LIQNL 1385
Cdd:TIGR02168 459 LEEAL 463
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
892-1115 |
2.17e-07 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 55.80 E-value: 2.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 892 QRLQKKLEDQNRENHGLVEKLTSLAALRVGDLEKV-----QKLEAELEKAATHRHSYEEKGRRYRDTVEERLSKLQKHNA 966
Cdd:pfam05667 246 TKLLKRIAEQLRSAALAGTEATSGASRSAQDLAELlssfsGSSTTDTGLTKGSRFTHTEKLQFTNEAPAATSSPPTKVET 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 967 ELELQRERAEQM--LQEKSEELKEKMDKLT----------RQLFDDVQKEEQQRLVLEKGFELKTQAY------EKQIES 1028
Cdd:pfam05667 326 EEELQQQREEELeeLQEQLEDLESSIQELEkeikklessiKQVEEELEELKEQNEELEKQYKVKKKTLdllpdaEENIAK 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1029 LREEIKALKDERSQLHHQLEEGQVTsdrLKGEVARLsKQAKTISEFEKEIELLQAQKIDVEKHVQSQKREMRErmsEVTK 1108
Cdd:pfam05667 406 LQALVDASAQRLVELAGQWEKHRVP---LIEEYRAL-KEAKSNKEDESQRKLEEIKELREKIKEVAEEAKQKE---ELYK 478
|
....*..
gi 568961004 1109 QLLESYD 1115
Cdd:pfam05667 479 QLVAEYE 485
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
888-1102 |
2.33e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.16 E-value: 2.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 888 TYRVQRLQKKLEDQNRENHGLVEKLTSLAALRVGDLEKVQKLEAELEKAAthrhsyeekgRRYRDTvEERLSKLQKHNAE 967
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA----------RRIRAL-EQELAALEAELAE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 968 LELQRERAEQMLQEKSEELKEKMDKLTRQ--------LFDdvQKEEQQRLVLEKGFELKTQAYEKQIESLREEIKALKDE 1039
Cdd:COG4942 88 LEKEIAELRAELEAQKEELAELLRALYRLgrqpplalLLS--PEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAAL 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568961004 1040 RSQLHHQLEEGQVTSDRLKGEVARLSKQ-----------AKTISEFEKEIELLQAQKIDVEKHVQSQKREMRER 1102
Cdd:COG4942 166 RAELEAERAELEALLAELEEERAALEALkaerqkllarlEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| CCDC73 |
pfam15818 |
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil ... |
944-1329 |
2.46e-07 |
|
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil containing proteins. The function is not known. The alternative name is sarcoma antigen NY-SAR-79.
Pssm-ID: 464893 [Multi-domain] Cd Length: 1048 Bit Score: 56.11 E-value: 2.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 944 EEKGRRYRDT-VEERLSKLQKHNAELELQREraeqMLQEKSEEL----KEKMDKLTRQLFDDVQKEEQqrlvlEKG-FEL 1017
Cdd:pfam15818 15 ELRMRREAETqYEEQIGKIIVETQELKWQKE----TLQNQKETLakqhKEAMAVFKKQLQMKMCALEE-----EKGkYQL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1018 KTQAYEKQIESLREEIKALkdersqlhhqleegqvtsdrlkgEVARLSKQaKTISEFEKEIELLQAQKIDVEKhvqsQKR 1097
Cdd:pfam15818 86 ATEIKEKEIEGLKETLKAL-----------------------QVSKYSLQ-KKVSEMEQKLQLHLLAKEDHHK----QLN 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1098 EMRERMSEVTKQL---------LESYDIEDVR--SRLSVedlehLNE--DGELWFAYEGLKKATRVL-ESHFQSQkdcYE 1163
Cdd:pfam15818 138 EIEKYYATITGQFglvkenhgkLEQNVQEAIQlnKRLSA-----LNKkqESEICSLKKELKKVTSDLiKSKVTCQ---YK 209
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1164 KEIEGLNFKVVHlsQEINHLQKLFREETDINESIRHEVTRLTSENM-MIPDFKQQISELERQKQ---DLESRLKEQAEKi 1239
Cdd:pfam15818 210 MGEENINLTIKE--QKFQELQERLNMELELNKKINEEITHIQEEKQdIIISFQHMQQLLQQQTQantEMEAELKALKEN- 286
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1240 egkleepfshlNRIREeermqgraphpflRAVEAQSEMHPEGKERLVGAIHEPHEAIKFPKKQPEAEEEVESILQQEASR 1319
Cdd:pfam15818 287 -----------NQTLE-------------RDNELQREKVKENEEKFLNLQNEHEKALGTWKKHVEELNGEINEIKNELSS 342
|
410
....*....|
gi 568961004 1320 LSLEKRDLEE 1329
Cdd:pfam15818 343 LKETHIKLQE 352
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
924-1386 |
2.56e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.92 E-value: 2.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 924 EKVQKLEAELEKAATHRHSYEE--KGRRYRDTVEERLSKLQKHNAELELQRERAEQMLQEKSEELKEKMDKltRQLFDDV 1001
Cdd:PTZ00121 1493 EEAKKKADEAKKAAEAKKKADEakKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEK--KKAEEAK 1570
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1002 QKEEQQRLVLEKGFELKtQAYEKQIESLREEIKALKDERSQLHHQLEEGQVTSDRLKG--EVARLSKQAKTISEFEKEie 1079
Cdd:PTZ00121 1571 KAEEDKNMALRKAEEAK-KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKaeEEKKKVEQLKKKEAEEKK-- 1647
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1080 llQAQKIDVEKHVQSQKREMRERMSEVTKQLLESYDIEDVRSRLSVEDLEHLNEDGelwfayeglKKATRVLESHFQSQK 1159
Cdd:PTZ00121 1648 --KAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEA---------KKAEELKKKEAEEKK 1716
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1160 DCYE--KEIEGLNFKVVHLSQEINHlQKLFREETDINESIRHEVTRLTSENMM----IPDFKQQISELERQKQDLESRLk 1233
Cdd:PTZ00121 1717 KAEElkKAEEENKIKAEEAKKEAEE-DKKKAEEAKKDEEEKKKIAHLKKEEEKkaeeIRKEKEAVIEEELDEEDEKRRM- 1794
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1234 eqaeKIEGKLEEPFSHLNRIREeermQGRAPHPFLRaveaqsemhpEGKERLVGAIHEPHEAIKFPKKQPEAEEEVESIL 1313
Cdd:PTZ00121 1795 ----EVDKKIKDIFDNFANIIE----GGKEGNLVIN----------DSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNK 1856
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1314 QQEASRLSLEKRDLEEELDMKDRMIRRLQ--DQVKTLTKT---TEKANHVHLPSGSR---EYLGMLEYKKEDEGKLIQNL 1385
Cdd:PTZ00121 1857 NNENGEDGNKEADFNKEKDLKEDDEEEIEeaDEIEKIDKDdieREIPNNNMAGKNNDiidDKLDKDEYIKRDAEETREEI 1936
|
.
gi 568961004 1386 I 1386
Cdd:PTZ00121 1937 I 1937
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
896-1245 |
2.65e-07 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 55.25 E-value: 2.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 896 KKLEDQNRENHGLVEKLtslaalrvgdLEKVQKLEAELekaATHRHSYEEkgrrYRDTVEERLSKLQKHNAELE------ 969
Cdd:pfam06160 110 DELLESEEKNREEVEEL----------KDKYRELRKTL---LANRFSYGP----AIDELEKQLAEIEEEFSQFEeltesg 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 970 --LQRERAEQMLQEKSEELKEKMDKLTrQLFDDVQKEEQQRL---------VLEKGFELKTQAYEKQIESLREEIKALKd 1038
Cdd:pfam06160 173 dyLEAREVLEKLEEETDALEELMEDIP-PLYEELKTELPDQLeelkegyreMEEEGYALEHLNVDKEIQQLEEQLEENL- 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1039 ersqlhHQLEEGQVtsDRLKGEVARLSKQAKTISE-FEKEIEllqAQKiDVEKHvQSQKREMRERMSEVTKQLLESYDIE 1117
Cdd:pfam06160 251 ------ALLENLEL--DEAEEALEEIEERIDQLYDlLEKEVD---AKK-YVEKN-LPEIEDYLEHAEEQNKELKEELERV 317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1118 DVRSRLSVEDLEHlnedgelwfayeglkkaTRVLESHFQSQKDCYEKEIEGLNFKVVHLSQEINHLQKLFREETDINEsi 1197
Cdd:pfam06160 318 QQSYTLNENELER-----------------VRGLEKQLEELEKRYDEIVERLEEKEVAYSELQEELEEILEQLEEIEE-- 378
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 568961004 1198 RHEvtrltsenmmipDFKQQISELERQkqdlESRLKEQAEKIEGKLEE 1245
Cdd:pfam06160 379 EQE------------EFKESLQSLRKD----ELEAREKLDEFKLELRE 410
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1022-1348 |
2.74e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 2.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1022 YEKQIESLREEIKALKDERSQLHHQLEEGQVTSDRLKGEVA--------RLSKQAKTISEFEKEIELLQAQKIDVEKHVQ 1093
Cdd:TIGR02169 168 FDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREkaeryqalLKEKREYEGYELLKEKEALERQKEAIERQLA 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1094 SQKREMRERMSEVTKQLLESYDIEDVRSRLSvEDLEHLNEDgelwfayEGLKKATRVLESHFQ-----SQKDCYEKEIEG 1168
Cdd:TIGR02169 248 SLEEELEKLTEEISELEKRLEEIEQLLEELN-KKIKDLGEE-------EQLRVKEKIGELEAEiasleRSIAEKERELED 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1169 LNFKVVHLSQEINhlqKLFREETDINESIRHEVTRLTSENMMIPDFKQQISELERQKQDLESRLKEQAEKIEgKLEEPFS 1248
Cdd:TIGR02169 320 AEERLAKLEAEID---KLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELK-DYREKLE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1249 HLNRIREE-ERMQGRAPHPFLRAVEAQSEMHPEgKERLVGAIHEPHEAIK-FPKKQPEAEEEVESI------LQQEASRL 1320
Cdd:TIGR02169 396 KLKREINElKRELDRLQEELQRLSEELADLNAA-IAGIEAKINELEEEKEdKALEIKKQEWKLEQLaadlskYEQELYDL 474
|
330 340
....*....|....*....|....*...
gi 568961004 1321 SLEKRDLEEELDMKDRMIRRLQDQVKTL 1348
Cdd:TIGR02169 475 KEEYDRVEKELSKLQRELAEAEAQARAS 502
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
932-1258 |
3.06e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 55.75 E-value: 3.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 932 ELEKAATHRHSYEEKGRRYRDTVEERLSKLQKHNAELELQRERAEQMLQEK-----SEELKEKMDKLTRQLFDDVQKEEQ 1006
Cdd:pfam02463 157 EIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKkaleyYQLKEKLELEEEYLLYLDYLKLNE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1007 QRLVL------------EKGFELKTQAYEKQIESLREEIKALKDERSQ----LHHQLEEGQVTSDRLKGEVARLSKqakt 1070
Cdd:pfam02463 237 ERIDLlqellrdeqeeiESSKQEIEKEEEKLAQVLKENKEEEKEKKLQeeelKLLAKEEEELKSELLKLERRKVDD---- 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1071 isefEKEIELLQAQKIDVEKHVQSQKREMRERmsevtKQLLESYDIEDVRSRLSVEDLEHLNEDGELwfAYEGLKKATRV 1150
Cdd:pfam02463 313 ----EEKLKESEKEKKKAEKELKKEKEEIEEL-----EKELKELEIKREAEEEEEEELEKLQEKLEQ--LEEELLAKKKL 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1151 LESHFQSQKDCYEKEIEGLNFKVvhlsQEINHLQKLFREETDINESIRHEVTRLTSENMMIPDFKQQISELERQKQDL-- 1228
Cdd:pfam02463 382 ESERLSSAAKLKEEELELKSEEE----KEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKqe 457
|
330 340 350
....*....|....*....|....*....|..
gi 568961004 1229 --ESRLKEQAEKIEGKLEEPFSHLNRIREEER 1258
Cdd:pfam02463 458 lkLLKDELELKKSEDLLKETQLVKLQEQLELL 489
|
|
| HMMR_N |
pfam15905 |
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ... |
895-1185 |
4.51e-07 |
|
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464932 [Multi-domain] Cd Length: 329 Bit Score: 54.05 E-value: 4.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 895 QKKLEDQNRenHGLVEKLTSLAALRVGDLEK-VQKLEAELEKAathrhsyEEKgrrYRDTVEERLSkLQKHNAELELQR- 972
Cdd:pfam15905 66 QKNLKESKD--QKELEKEIRALVQERGEQDKrLQALEEELEKV-------EAK---LNAAVREKTS-LSASVASLEKQLl 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 973 --ERAEQMLQEKSEE--LKEKMDKLTRQLF---DDVQKEEQQRLVLEKGFELKTQAYEKQIESLREEIKALKDERSQLHH 1045
Cdd:pfam15905 133 elTRVNELLKAKFSEdgTQKKMSSLSMELMklrNKLEAKMKEVMAKQEGMEGKLQVTQKNLEHSKGKVAQLEEKLVSTEK 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1046 QLEEGQVTSDRLKGEVARLSKQAKTISEFEKEIELLQAQKIDVEKHVQSQKREMRERMSEVTKQllesydIEDVRSRLSV 1125
Cdd:pfam15905 213 EKIEEKSETEKLLEYITELSCVSEQVEKYKLDIAQLEELLKEKNDEIESLKQSLEEKEQELSKQ------IKDLNEKCKL 286
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1126 edLEHLNEDgelwfayeglkkatrvLESHFQSQKDCYEKEIEGLNFKVVHLSQEINHLQK 1185
Cdd:pfam15905 287 --LESEKEE----------------LLREYEEKEQTLNAELEELKEKLTLEEQEHQKLQQ 328
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
891-1138 |
7.26e-07 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 52.99 E-value: 7.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 891 VQRLQKKLEDQNRENHGLVEKLTSLAALRVGDLEKVQKLEAEL----EKAATHRHSYEEKGRRYRDTVEERLS--KLQKH 964
Cdd:COG1340 38 LKELAEKRDELNAQVKELREEAQELREKRDELNEKVKELKEERdelnEKLNELREELDELRKELAELNKAGGSidKLRKE 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 965 NAELE--LQRE----RAEQMLQEKSEELKE------KMDKLTRQLFDDVQKEEQQRLVLEKGFELKTQAYEK------QI 1026
Cdd:COG1340 118 IERLEwrQQTEvlspEEEKELVEKIKELEKelekakKALEKNEKLKELRAELKELRKEAEEIHKKIKELAEEaqelheEM 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1027 ESLREEIKALKDERSQLHHQLEEGQVTSDRLKGEVARLSKQaktISEFEKEIELLQAQKIDVEKhvQSQKREMRERMSEV 1106
Cdd:COG1340 198 IELYKEADELRKEADELHKEIVEAQEKADELHEEIIELQKE---LRELRKELKKLRKKQRALKR--EKEKEELEEKAEEI 272
|
250 260 270
....*....|....*....|....*....|..
gi 568961004 1107 TKQLLESydiedvrSRLSVEDLEHLNEDGELW 1138
Cdd:COG1340 273 FEKLKKG-------EKLTTEELKLLQKSGLLE 297
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
886-1243 |
8.50e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 54.20 E-value: 8.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 886 QLTYRVQRLQKKLEDQNRENHGLVEKLTSLAalrvgdlEKVQKLEAELEKAATHRHSYEEKGRRYRDTVEERLSKLQKhn 965
Cdd:TIGR00618 532 RGEQTYAQLETSEEDVYHQLTSERKQRASLK-------EQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEK-- 602
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 966 aELELQRERAEQmLQEKSEELKEKMDKLTRQLFDDVQKEEQQRLVLEKGFELKTQAYEKQIESLR--EEIKALKDERSQL 1043
Cdd:TIGR00618 603 -LSEAEDMLACE-QHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALsiRVLPKELLASRQL 680
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1044 HHQLEEG---QVTSDR--LKGEVARLSKQAKTISEFEKEIELLQ----AQKIDVEK----HVQSQKREMRERmSEVTKQL 1110
Cdd:TIGR00618 681 ALQKMQSekeQLTYWKemLAQCQTLLRELETHIEEYDREFNEIEnassSLGSDLAAredaLNQSLKELMHQA-RTVLKAR 759
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1111 LESYDIEDVRSRLSV---EDLEHLNEDGELWF-AYEGLKKATRVLESHFQSQKDCYEKEiegLNFKVVHLSQEINHLQKL 1186
Cdd:TIGR00618 760 TEAHFNNNEEVTAALqtgAELSHLAAEIQFFNrLREEDTHLLKTLEAEIGQEIPSDEDI---LNLQCETLVQEEEQFLSR 836
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 568961004 1187 FREETDINESIRHEVTRLTSENMMIPDFKQQISELERQKQDLESRLKEQAEKIEGKL 1243
Cdd:TIGR00618 837 LEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLNGINQIKIQFDGDAL 893
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1018-1248 |
8.96e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.23 E-value: 8.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1018 KTQAYEKQIESLREEIKALKDERSQLHHQLEEGQVTSDRLKGEVARLSKQAKT----ISEFEKEIELLQAQKIDVEKHVQ 1093
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRAleqeLAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1094 SQKREMRERMSEVTKQ--------LLESYDIEDVRSRLSVedLEHLNE-DGELWFAYEGLKKATRVLESHFQSQKDCYEK 1164
Cdd:COG4942 101 AQKEELAELLRALYRLgrqpplalLLSPEDFLDAVRRLQY--LKYLAPaRREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1165 EIEGlnfkvvhLSQEINHLQKLFREETDINESIRHEVTRLtsenmmipdfKQQISELERQKQDLESRLKEQAEKIEGKLE 1244
Cdd:COG4942 179 LLAE-------LEEERAALEALKAERQKLLARLEKELAEL----------AAELAELQQEAEELEALIARLEAEAAAAAE 241
|
....
gi 568961004 1245 EPFS 1248
Cdd:COG4942 242 RTPA 245
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
848-1410 |
1.00e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 53.96 E-value: 1.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 848 RRYRKLLQEHKAV----------ILQKYARAWLARRRFQNIRRFVLNIQltYRVQRLQKKLEDQNRENHGLVEKltSLAA 917
Cdd:pfam05483 78 RLYSKLYKEAEKIkkwkvsieaeLKQKENKLQENRKIIEAQRKAIQELQ--FENEKVSLKLEEEIQENKDLIKE--NNAT 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 918 LRVGDLEKvQKLEAELEKAATHRHSYEEKGRRYRDtVEERLSKLQKHNAELELQRERAEQMLQEKSEELKEKMDKLTRQL 997
Cdd:pfam05483 154 RHLCNLLK-ETCARSAEKTKKYEYEREETRQVYMD-LNNNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEY 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 998 FDDVQKEEQQRLVL-----EKGFELKTQAY------------EKQIESLREEIKALKDERSQLHHQLEEGQVTSDRLKGE 1060
Cdd:pfam05483 232 KKEINDKEKQVSLLliqitEKENKMKDLTFlleesrdkanqlEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMST 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1061 VARL------------------------SKQAKT-----ISEFEKEI----ELLQAQKIDVEKH----------VQSQKR 1097
Cdd:pfam05483 312 QKALeedlqiatkticqlteekeaqmeeLNKAKAahsfvVTEFEATTcsleELLRTEQQRLEKNedqlkiitmeLQKKSS 391
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1098 EMrERMSEVTKQllESYDIEDVRSRLSvEDLEHLNEDGELWFAYEGLKKATRVLESHFQSQkdcyEKEIEGLNFKVVHLS 1177
Cdd:pfam05483 392 EL-EEMTKFKNN--KEVELEELKKILA-EDEKLLDEKKQFEKIAEELKGKEQELIFLLQAR----EKEIHDLEIQLTAIK 463
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1178 QEINHLQKLFREETDINESIRHEVTRLTSE-NMMIPDFKqqisELERQKQDLESRLKEQAEKIegkleepfshLNRIREE 1256
Cdd:pfam05483 464 TSEEHYLKEVEDLKTELEKEKLKNIELTAHcDKLLLENK----ELTQEASDMTLELKKHQEDI----------INCKKQE 529
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1257 ERMqgraphpfLRAVEAQSEMHPEGKERLVGAIHEPHE-----AIKFPKKQPEAEEEVESILQQEASRLSLEKR--DLEE 1329
Cdd:pfam05483 530 ERM--------LKQIENLEEKEMNLRDELESVREEFIQkgdevKCKLDKSEENARSIEYEVLKKEKQMKILENKcnNLKK 601
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1330 ELDMKDRMIRRLQDQVKTLTKTTEKAN-------------HVHLPSGSREYLGMLE-YKKEDEGKLI--QNLILDLKPRG 1393
Cdd:pfam05483 602 QIENKNKNIEELHQENKALKKKGSAENkqlnayeikvnklELELASAKQKFEEIIDnYQKEIEDKKIseEKLLEEVEKAK 681
|
650
....*....|....*..
gi 568961004 1394 VVVNMIPGLPAHILFMC 1410
Cdd:pfam05483 682 AIADEAVKLQKEIDKRC 698
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
952-1245 |
1.12e-06 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 52.98 E-value: 1.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 952 DTVEERLSKLQKHNAELELQRERAEQMLQEKSEELKEKMDKLTRQLfdDVQKEEQQRLVLEKgfelktQAYEKQIESLRE 1031
Cdd:COG4372 2 DRLGEKVGKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEEL--EQLREELEQAREEL------EQLEEELEQARS 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1032 EIKALKDERSQLHHQLEEGQVTSDRLKGEVARLSKQAKT----ISEFEKEIELLQAQKIDVEKHVQSQKREMRERMSEVT 1107
Cdd:COG4372 74 ELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEElqeeLEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELK 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1108 KQLLESYDIEDVRSRLSVEDLEHLNEDGELWFAyEGLKKATRVLESHFQSQKDCYEKEIEGLNFKVVHLSQEINHLQKLF 1187
Cdd:COG4372 154 ELEEQLESLQEELAALEQELQALSEAEAEQALD-ELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLG 232
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 568961004 1188 REETDINESIRHEVTRLTSENMMIPDFKQQISELERQKQDLESRLKEQAEKIEGKLEE 1245
Cdd:COG4372 233 LALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEE 290
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
886-1245 |
4.10e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.94 E-value: 4.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 886 QLTYRVQRLQKKLEdqNRENhglveKLTSLAALRVGDLEKVQKLEAELEKAATHRHSYEEKGRRYRDTVEERLSKLQKHN 965
Cdd:TIGR04523 37 QLEKKLKTIKNELK--NKEK-----ELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKIN 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 966 AELELQREraeQMLQEKSEelkekMDKLTRQLfddVQKEEQQRLVLEKGFELKTQAYE--KQIESLREEIKALKDERSQL 1043
Cdd:TIGR04523 110 SEIKNDKE---QKNKLEVE-----LNKLEKQK---KENKKNIDKFLTEIKKKEKELEKlnNKYNDLKKQKEELENELNLL 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1044 HHQLEEGQVTSDRLKGEVARLSKQAKTISEFEKEIELLQAQKIDVEKHVQSQKREMRERMSEVTKQLLESYDIEDVRSRL 1123
Cdd:TIGR04523 179 EKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQL 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1124 SVEDLEHLNEDGELWFAYEGLKKATRVLESHFQSqkdcYEKEIEGLNfkvvhlSQEINHLQKLFREE-TDINESIRHEVT 1202
Cdd:TIGR04523 259 KDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQ----LKSEISDLN------NQKEQDWNKELKSElKNQEKKLEEIQN 328
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 568961004 1203 RLTSENMMIPDFKQQISELERQKQDLESRLKEQAEKIEGKLEE 1245
Cdd:TIGR04523 329 QISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNE 371
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
886-1342 |
4.29e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 51.97 E-value: 4.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 886 QLTYRVQRLQKKLEDQNRENHGLVEKLTSLA-----ALRVGDLE-KVQKLEAELEKAATHRHSYEEKGRRYRDTVEERLS 959
Cdd:TIGR00606 595 KLNKELASLEQNKNHINNELESKEEQLSSYEdklfdVCGSQDEEsDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTD 674
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 960 KLQ----------KHNAELELQRERAEQMLQEKSEELKEkmdklTRQLFDDVQKEEQQRLVLEKGFELKTQAYEKQIESL 1029
Cdd:TIGR00606 675 ENQsccpvcqrvfQTEAELQEFISDLQSKLRLAPDKLKS-----TESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPEL 749
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1030 REEIKALKDERSQLHHQLEEgqvtSDRLKGEVARLSKQAKTISEFEKEIELLQAQKIDVEKHVQSQKREmrermsevtkq 1109
Cdd:TIGR00606 750 RNKLQKVNRDIQRLKNDIEE----QETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAK----------- 814
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1110 lLESYDIEdvrsrLSVEDLEHLNEDGElwfayEGLKKATRVLESHFQSQKDcYEKEIEGLNFKVVHLSQEINHLQKLFRE 1189
Cdd:TIGR00606 815 -LQGSDLD-----RTVQQVNQEKQEKQ-----HELDTVVSKIELNRKLIQD-QQEQIQHLKSKTNELKSEKLQIGTNLQR 882
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1190 ETDINESIRHEVTRLTSENMMIPDFKQQISELERQKQDLESR---------------------LKEQAEKIEGKLEEPFS 1248
Cdd:TIGR00606 883 RQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEkeelissketsnkkaqdkvndIKEKVKNIHGYMKDIEN 962
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1249 HLNRIREEERMQGRAPhpfLRAVEAQSEMHPEGKERLvgaihepHEAIKFPKKQPEAEEEVESILQQEASRLSLEK--RD 1326
Cdd:TIGR00606 963 KIQDGKDDYLKQKETE---LNTVNAQLEECEKHQEKI-------NEDMRLMRQDIDTQKIQERWLQDNLTLRKRENelKE 1032
|
490
....*....|....*.
gi 568961004 1327 LEEELDMKDRMIRRLQ 1342
Cdd:TIGR00606 1033 VEEELKQHLKEMGQMQ 1048
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
922-1109 |
4.50e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 4.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 922 DLEKVQKLEAELEKAATHRHSYEEKGRRYRDTVEERLSKLQKHNAELELQRERAEQMLQEKSEE-------LKEKMDKLT 994
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEiaelraeLEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 995 RQLFDDVQKEEQQRLVLEKGFELKTQAYeKQIESLREEIKALKDERSQLHHQLEEGQVTSDRLKGEVARLSKQAKTISEF 1074
Cdd:COG4942 108 ELLRALYRLGRQPPLALLLSPEDFLDAV-RRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEE 186
|
170 180 190
....*....|....*....|....*....|....*
gi 568961004 1075 EKEIELLQAQKIDVEKHVQSQKREMRERMSEVTKQ 1109
Cdd:COG4942 187 RAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1016-1238 |
5.25e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 50.98 E-value: 5.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1016 ELKTQAYEKQIESLREEIKALKDERSQLHHQLEEGQVTSDRLKGEVARLSKQaktISEFEKEIELLQAQkidvekhVQSQ 1095
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAE---IDKLQAEIAEAEAE-------IEER 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1096 KREMRERMSEVTKQ---------LLESYDIEDVRSRLSVedLEHLNE-DGELwfaYEGLKKATRVLEshfqSQKDCYEKE 1165
Cdd:COG3883 85 REELGERARALYRSggsvsyldvLLGSESFSDFLDRLSA--LSKIADaDADL---LEELKADKAELE----AKKAELEAK 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568961004 1166 IEGLNFKVVHLSQEINHLQKLFREETDINESIRHEVTRLtsenmmipdfKQQISELERQKQDLESRLKEQAEK 1238
Cdd:COG3883 156 LAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAA----------EAQLAELEAELAAAEAAAAAAAAA 218
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
890-1354 |
5.35e-06 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 51.44 E-value: 5.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 890 RVQRLQKKLEDQNRENHGLVEKLTSLAALrvgdLEKVQKLEAELEKAATHRHSYEEKGRRYRDtVEERLSKLQkhNAELE 969
Cdd:PRK01156 219 EIERLSIEYNNAMDDYNNLKSALNELSSL----EDMKNRYESEIKTAESDLSMELEKNNYYKE-LEERHMKII--NDPVY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 970 LQRERAEQMLQEKSEelKEKMDKLTRQLFDDVQKEEQQRLVLEkgfelktqayekQIESLREEIKALKDERSQLHHQLEE 1049
Cdd:PRK01156 292 KNRNYINDYFKYKND--IENKKQILSNIDAEINKYHAIIKKLS------------VLQKDYNDYIKKKSRYDDLNNQILE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1050 GQVTSDRLKGEVARLSKQAKTISEFEKEIELLQAQKIDVEKHVQSQKREMRERMSEVTKQLLE-SYDIE--DVRSRLSVE 1126
Cdd:PRK01156 358 LEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDiSSKVSslNQRIRALRE 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1127 DLEHLNEDGELwfaYEGLKKATrVLESHFQSQKDcyEKEIEGLNFKVVHLSQEINHLQklfREETDINESIRHEVTRLT- 1205
Cdd:PRK01156 438 NLDELSRNMEM---LNGQSVCP-VCGTTLGEEKS--NHIINHYNEKKSRLEEKIREIE---IEVKDIDEKIVDLKKRKEy 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1206 ---SENMMIPDFKQQISELERQKQDLESRLKEQAEKiEGKLEEPFSHLNRIREEERMQGRAPHPFLRAV------EAQSE 1276
Cdd:PRK01156 509 lesEEINKSINEYNKIESARADLEDIKIKINELKDK-HDKYEEIKNRYKSLKLEDLDSKRTSWLNALAVislidiETNRS 587
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568961004 1277 MHPEGKERLVGAIHEPHE-AIKFPKKQPEAEEEVESIlQQEASRLSLEKRDLEEeldmKDRMIRRLQDQVKTLTKTTEK 1354
Cdd:PRK01156 588 RSNEIKKQLNDLESRLQEiEIGFPDDKSYIDKSIREI-ENEANNLNNKYNEIQE----NKILIEKLRGKIDNYKKQIAE 661
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
895-1283 |
5.46e-06 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 51.11 E-value: 5.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 895 QKKLEDQNRENHGLVEKLTSLAAlRVGDLEKVQKLEAELEKAATHRHSYEEKGRRYRDTVEERLSKLQKHNAELELQRER 974
Cdd:COG5185 208 KESETGNLGSESTLLEKAKEIIN-IEEALKGFQDPESELEDLAQTSDKLEKLVEQNTDLRLEKLGENAESSKRLNENANN 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 975 AEQMLQEKSEELKEKMDKLTRQLFDDVQKEEQQRLVLEKGFELKTQAYEKQIESLREEIkalKDERSQLHHQLEEGQVTS 1054
Cdd:COG5185 287 LIKQFENTKEKIAEYTKSIDIKKATESLEEQLAAAEAEQELEESKRETETGIQNLTAEI---EQGQESLTENLEAIKEEI 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1055 DRLKGEVaRLSKQAKTISEFEKEIEllqAQKIDVEKHVQSQKREMRERMSEVTKQLlesydiedvrsRLSVEDLEHLNED 1134
Cdd:COG5185 364 ENIVGEV-ELSKSSEELDSFKDTIE---STKESLDEIPQNQRGYAQEILATLEDTL-----------KAADRQIEELQRQ 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1135 gelwfayegLKKATRVLEShFQSQKDCYEKEIEglnfKVVHLSQEiNHLQKLFREETDINESIRHEVTRLTSENMMIpdf 1214
Cdd:COG5185 429 ---------IEQATSSNEE-VSKLLNELISELN----KVMREADE-ESQSRLEEAYDEINRSVRSKKEDLNEELTQI--- 490
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568961004 1215 KQQISELERQKQDLESRLKEQAEKIEGKL---EEPFSHLNRIREEERMQGRAPHPFLRAVEAQSEMHPEGKE 1283
Cdd:COG5185 491 ESRVSTLKATLEKLRAKLERQLEGVRSKLdqvAESLKDFMRARGYAHILALENLIPASELIQASNAKTDGQA 562
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
890-1112 |
5.51e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.17 E-value: 5.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 890 RVQRLQKKLEDQNRENHGLVEKLTSLAaLRVGDLEKV-----QKLEAELEKAATHRHSYEEKGRRYRDTVEErLSKLQKH 964
Cdd:TIGR04523 427 EIERLKETIIKNNSEIKDLTNQDSVKE-LIIKNLDNTresleTQLKVLSRSINKIKQNLEQKQKELKSKEKE-LKKLNEE 504
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 965 NAELELQreraEQMLQEKSEELKEKMDKLTRQLFDDVQK-EEQQRLVLEKGFELKTQAYEKQIESLREEIKALKDERSQL 1043
Cdd:TIGR04523 505 KKELEEK----VKDLTKKISSLKEKIEKLESEKKEKESKiSDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSL 580
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568961004 1044 HHQLEEGQVTSDRLKGEVARLSKQ----AKTISEFEKEIELLQAQKIDVE---KHVQSQKREMRERMSEVTKQLLE 1112
Cdd:TIGR04523 581 KKKQEEKQELIDQKEKEKKDLIKEieekEKKISSLEKELEKAKKENEKLSsiiKNIKSKKNKLKQEVKQIKETIKE 656
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
924-1156 |
5.74e-06 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 50.67 E-value: 5.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 924 EKVQKLEAELEKAATHRHSYEEKGRRYRDTVEERLSKLQKHNAELELQRERAEQM------LQEKSEELKEKMDKLTRQL 997
Cdd:COG4372 45 EELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAqeelesLQEEAEELQEELEELQKER 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 998 fDDVQKEEQQRLVLEKGFELKTQAYEKQIESLREEIKALKDERSQLHHQLEegQVTSDRLKGEVARLSKQAKTISEFEKE 1077
Cdd:COG4372 125 -QDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQ--ALSEAEAEQALDELLKEANRNAEKEEE 201
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568961004 1078 IELLQaQKIDVEKHVQSQKREMRERMSEVTKQLLESYDIEDVRsrlSVEDLEHLNEDGELWFAYEGLKKATRVLESHFQ 1156
Cdd:COG4372 202 LAEAE-KLIESLPRELAEELLEAKDSLEAKLGLALSALLDALE---LEEDKEELLEEVILKEIEELELAILVEKDTEEE 276
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
859-1043 |
6.48e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 51.17 E-value: 6.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 859 AVILQKYARAWLARRRFQNIRRFVLNIQ-LTYRVQRLQKKLEDQN------RENHGLV--EKLTSLAALRVGDLE-KVQK 928
Cdd:COG3206 151 AAVANALAEAYLEQNLELRREEARKALEfLEEQLPELRKELEEAEaaleefRQKNGLVdlSEEAKLLLQQLSELEsQLAE 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 929 LEAELEKAATHRHSYEEKGRRYRDTVEE-----RLSKLQKHNAELELQRERAEQMLQEKS---EELKEKMDKLTRQLFDD 1000
Cdd:COG3206 231 ARAELAEAEARLAALRAQLGSGPDALPEllqspVIQQLRAQLAELEAELAELSARYTPNHpdvIALRAQIAALRAQLQQE 310
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 568961004 1001 VQKEEQQRLVLEKGFELKTQAYEKQIESLREEIKALKDERSQL 1043
Cdd:COG3206 311 AQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAEL 353
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
878-1101 |
6.87e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 6.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 878 IRRFVLNIQLTY-RVQRLQKKLEDQNReNHGLVEKltslAALRVGDLEKVQKLEAELEKAAT---------HRHSYEEKG 947
Cdd:COG4913 213 VREYMLEEPDTFeAADALVEHFDDLER-AHEALED----AREQIELLEPIRELAERYAAARErlaeleylrAALRLWFAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 948 RRYrDTVEERLSKLQKHNAELELQRERAEQMLQEKSEELKE-----------KMDKLTRQLfDDVQKEEQQRlvlekgfE 1016
Cdd:COG4913 288 RRL-ELLEAELEELRAELARLEAELERLEARLDALREELDEleaqirgnggdRLEQLEREI-ERLERELEER-------E 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1017 LKTQAYEKQIESL--------------REEIKALKDERSQLHHQLEEGQvtsDRLKGEVARLSKQAKTIsefEKEIELLQ 1082
Cdd:COG4913 359 RRRARLEALLAALglplpasaeefaalRAEAAALLEALEEELEALEEAL---AEAEAALRDLRRELREL---EAEIASLE 432
|
250
....*....|....*....
gi 568961004 1083 AQKIDVEKHVQSQKREMRE 1101
Cdd:COG4913 433 RRKSNIPARLLALRDALAE 451
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
924-1077 |
1.02e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 50.24 E-value: 1.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 924 EKVQKLEAELEKAATHRHSYEEKGRRYRDTVEErlskLQKHNAELELQRERAEQMLQEKSEELKEKmdkltrqlfddvqK 1003
Cdd:COG2433 392 EEEPEAEREKEHEERELTEEEEEIRRLEEQVER----LEAEVEELEAELEEKDERIERLERELSEA-------------R 454
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568961004 1004 EEQQRLVLEkgfelktqayEKQIESLREEIKALKDERSQLHHQLEEGQVTSDRLKgEVARLSKQ-----AKTISEFEKE 1077
Cdd:COG2433 455 SEERREIRK----------DREISRLDREIERLERELEEERERIEELKRKLERLK-ELWKLEHSgelvpVKVVEKFTKE 522
|
|
| Apolipoprotein |
pfam01442 |
Apolipoprotein A1/A4/E domain; These proteins contain several 22 residue repeats which form a ... |
924-1084 |
1.84e-05 |
|
Apolipoprotein A1/A4/E domain; These proteins contain several 22 residue repeats which form a pair of alpha helices. This family includes: Apolipoprotein A-I. Apolipoprotein A-IV. Apolipoprotein E.
Pssm-ID: 460211 [Multi-domain] Cd Length: 175 Bit Score: 46.87 E-value: 1.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 924 EKVQKLEAELEKAAthrhsyeekgRRYRDTVEERLSKLQKH-NAELELQRERAE-------QMLQEKSEELKEKMDKLTR 995
Cdd:pfam01442 11 TYAEELQEQLGPVA----------QELVDRLEKETEALRERlQKDLEEVRAKLEpyleelqAKLGQNVEELRQRLEPYTE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 996 QLFDDVQK--EEQQRLVLEKGFELKTQAyEKQIESLREEIKALKDE-RSQLHHQLEEGQVTSDRLKGEV-ARLSKQAKTI 1071
Cdd:pfam01442 81 ELRKRLNAdaEELQEKLAPYGEELRERL-EQNVDALRARLAPYAEElRQKLAERLEELKESLAPYAEEVqAQLSQRLQEL 159
|
170
....*....|....
gi 568961004 1072 SE-FEKEIELLQAQ 1084
Cdd:pfam01442 160 REkLEPQAEDLREK 173
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
971-1190 |
1.86e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 1.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 971 QRERAEQmLQEKSEELKEKMDKLTRQLFDDVQKEEQQRLVLEKgFELKTQAYEKQIESLREEIKALKDERSQLHHQLEEG 1050
Cdd:COG4942 18 QADAAAE-AEAELEQLQQEIAELEKELAALKKEEKALLKQLAA-LERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1051 QVTSDRLKGEVARLSKQAKTISEFEKEIELLQAQKI-DVEKHVQSQKREMRERMSEVTKQLLESYDIEDVRSRLSVEDLE 1129
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFlDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568961004 1130 H---LNEDGELWFAYEGLKKATRVLESHFQSQKDCYEKEIEGLNFKVVHLSQEINHLQKLFREE 1190
Cdd:COG4942 176 LealLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
892-1331 |
1.96e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 1.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 892 QRLQKKLEDQNrENHGLVEKLTSLAALRVGDL--EKVQKLEAELEKAATHRhsyeekgrryrDTVEERLSKLQKHnaELE 969
Cdd:COG4913 262 ERYAAARERLA-ELEYLRAALRLWFAQRRLELleAELEELRAELARLEAEL-----------ERLEARLDALREE--LDE 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 970 LQRERAEQMLQEKsEELKEKMDKLTRQLfDDVQKEEQQRLVLEKGFELKTQAYEKQIESLREEIKALKDERSQLHHQLEE 1049
Cdd:COG4913 328 LEAQIRGNGGDRL-EQLEREIERLEREL-EERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEE 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1050 GQvtsDRLKGEVARLSKQAKTIsefEKEIELLQAQKIDVEKHVQSQKREMRERMS------------------------- 1104
Cdd:COG4913 406 AL---AEAEAALRDLRRELREL---EAEIASLERRKSNIPARLLALRDALAEALGldeaelpfvgelievrpeeerwrga 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1105 ----------------EVTKQLLESYDIEDVRSRLSVEDLEHLNEDGEL---------------------W--------F 1139
Cdd:COG4913 480 iervlggfaltllvppEHYAAALRWVNRLHLRGRLVYERVRTGLPDPERprldpdslagkldfkphpfraWleaelgrrF 559
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1140 AY------EGLKKATR----------------------VLESHF-----QSQKDCYEKEIEGLNFKVVHLSQEINHLQKL 1186
Cdd:COG4913 560 DYvcvdspEELRRHPRaitragqvkgngtrhekddrrrIRSRYVlgfdnRAKLAALEAELAELEEELAEAEERLEALEAE 639
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1187 FREETDINESIRHeVTRLTSENMMIPDFKQQISELERQKQDLES------RLKEQAEKIEGKLEEPFSHLNRIREEERMQ 1260
Cdd:COG4913 640 LDALQERREALQR-LAEYSWDEIDVASAEREIAELEAELERLDAssddlaALEEQLEELEAELEELEEELDELKGEIGRL 718
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568961004 1261 GRApHPFLRAVEAQSEMHPEGKERLVGAIHEPHEAIKFPK-KQPEAEEEVESILQQEASRLSLEKRDLEEEL 1331
Cdd:COG4913 719 EKE-LEQAEEELDELQDRLEAAEDLARLELRALLEERFAAaLGDAVERELRENLEERIDALRARLNRAEEEL 789
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
923-1124 |
2.08e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 49.57 E-value: 2.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 923 LEKVQKLEAELEKAATHRhSYEEKGRRYRD--TVEERLSKLQKHNAELElQRERAEQMLQekseelkekmdkltrQLFDD 1000
Cdd:PRK04863 479 YQLVRKIAGEVSRSEAWD-VARELLRRLREqrHLAEQLQQLRMRLSELE-QRLRQQQRAE---------------RLLAE 541
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1001 VQKEEQQRLVLEKGFELKTQAYEKQIESLREEIKALKDERSQLHHQLEEgqvtsdrLKGEVARLSKQAKTISEFEKEIEL 1080
Cdd:PRK04863 542 FCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQ-------LQARIQRLAARAPAWLAAQDALAR 614
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 568961004 1081 LQAQ-------KIDVEKHVQSQKRemRERMSEVTKQLLES--YDIEDVRSRLS 1124
Cdd:PRK04863 615 LREQsgeefedSQDVTEYMQQLLE--RERELTVERDELAArkQALDEEIERLS 665
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
896-1256 |
2.13e-05 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 49.45 E-value: 2.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 896 KKLEDQNRENHGLVEKLtslaalrvgdLEKVQKLEAELekaATHRHSYeekGRRYrDTVEERLSKLQKHNAELE------ 969
Cdd:PRK04778 129 QELLESEEKNREEVEQL----------KDLYRELRKSL---LANRFSF---GPAL-DELEKQLENLEEEFSQFVeltesg 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 970 --LQRERAEQMLQEKSEELKEKMDKLTrQLFDDVQKEEQQRL---------VLEKGFELKTQAYEKQIESLREEIKALKD 1038
Cdd:PRK04778 192 dyVEAREILDQLEEELAALEQIMEEIP-ELLKELQTELPDQLqelkagyreLVEEGYHLDHLDIEKEIQDLKEQIDENLA 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1039 ERSQLhhqleegqvtsdrlkgEVARLSKQAKTISE--------FEKEIEllqAQKiDVEKHvQSQKREMRERMSEVTKQL 1110
Cdd:PRK04778 271 LLEEL----------------DLDEAEEKNEEIQEridqlydiLEREVK---ARK-YVEKN-SDTLPDFLEHAKEQNKEL 329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1111 L-------ESY-----DIEDVRSRLsvEDLEHLNEDgelwfayegLKKATRVLESH---FQSQKDCYEKEIEGLnfKVVH 1175
Cdd:PRK04778 330 KeeidrvkQSYtlnesELESVRQLE--KQLESLEKQ---------YDEITERIAEQeiaYSELQEELEEILKQL--EEIE 396
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1176 LSQE--INHLQKLFREETDINESIRHEVTRLTS-----ENMMIP----DFKQQISELERQKQDLESRLKEQ---AEKIEG 1241
Cdd:PRK04778 397 KEQEklSEMLQGLRKDELEAREKLERYRNKLHEikrylEKSNLPglpeDYLEMFFEVSDEIEALAEELEEKpinMEAVNR 476
|
410
....*....|....*
gi 568961004 1242 KLEEPFSHLNRIREE 1256
Cdd:PRK04778 477 LLEEATEDVETLEEE 491
|
|
| Mpp10 |
COG5384 |
U3 small nucleolar ribonucleoprotein component [Translation, ribosomal structure and ... |
930-1356 |
2.16e-05 |
|
U3 small nucleolar ribonucleoprotein component [Translation, ribosomal structure and biogenesis];
Pssm-ID: 227674 [Multi-domain] Cd Length: 569 Bit Score: 49.30 E-value: 2.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 930 EAELEKAAThrhSYEEKGRRYRDTVE------ERLSKLQKHNAElELQRERAEQMLQEKSEELKEKMDKLTRQLFDDVQK 1003
Cdd:COG5384 94 ESELEEAES---VFKEKQMLSADVSEieeqsnDSLSENDEEPSM-DDEKTSAEAAREEFAEEKRIPDPYGINDKFFDLEK 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1004 EEQQRLVLEKGFELKTQAYEKQIESLREEIKALKDERSQLHHQLEEGQVTSDRLKGEVARLSKQAKTISEfEKEIELLQA 1083
Cdd:COG5384 170 FNRDTLAAEDSNEASEGSEDEDIDYFQDMPSDDEEEEAIYYEDFFDKPTKEPVKKHSDVKDPKEDEELDE-EEHDSAMDK 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1084 QKIDVEKHVQSQKREmrERMSEVTKQLLESYDIEDVRSRLSVEDLEHLNEDGELWfAYEGLKKATRVLESHFQSqkdcye 1163
Cdd:COG5384 249 VKLDLFADEEDEPNA--EGVGEASDKNLSSFEKQQIEMDEQIEELEKELVAPKEW-KYAGEVSAKKRPKNSLLA------ 319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1164 keiEGLNFKV------VHLSQEINHLQKLFREET------DINESIRHEVTRLT-SENMMIPDFKQQISELERQKQDL-- 1228
Cdd:COG5384 320 ---EELEFKQgakpvpVSTKEDTESLEDIILQRIregtfdDHAYRIREEVTIADeIPEFELLESKSILSLAEEYEGDLmq 396
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1229 ---ESRLKEQAEKIEGKLEEPFSHLNRIREEERMQGRAPHPFLRAVEAQSEMhpegkerlvgaihephEAIKFPKKQPEA 1305
Cdd:COG5384 397 ivdESALSEELDKGHNEIFVLDSEIRMVLDTLKSLHSVPKPGAKSLEIIKNV----------------PTLKMEDAQPLY 460
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568961004 1306 EEEVESILQQEASRLSLEKRDLE-----------EELDMKDRMIRRLQDQVKTLTKTTEKAN 1356
Cdd:COG5384 461 MSNASSLAPQEIYNVGKAEKDGEirlkngvamskEELTREDKNRLRRALKRKRSKANLPNVN 522
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
884-1358 |
2.18e-05 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 49.44 E-value: 2.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 884 NIQLTYRVQRLQKKLEDQNRENHGLVEKLTS-------LAALRVGDLEKVQKLEAELEKAATH----RHSYEEKGRRY-- 950
Cdd:pfam10174 69 NQHLQLTIQALQDELRAQRDLNQLLQQDFTTspvdgedKFSTPELTEENFRRLQSEHERQAKElfllRKTLEEMELRIet 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 951 -------RD-TVEERLSKLQ----------------KHNAELELQRERAEQMLQEKSEELKEKMDKLTR--QLFDDVQKE 1004
Cdd:pfam10174 149 qkqtlgaRDeSIKKLLEMLQskglpkksgeedwertRRIAEAEMQLGHLEVLLDQKEKENIHLREELHRrnQLQPDPAKT 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1005 EQQRLVLEKGfELKTQAYEKQIESLREEIKALK-------DERSQLHHQLEEGQVTSDRLKGEVARL----SKQAKTISE 1073
Cdd:pfam10174 229 KALQTVIEMK-DTKISSLERNIRDLEDEVQMLKtngllhtEDREEEIKQMEVYKSHSKFMKNKIDQLkqelSKKESELLA 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1074 FEKEIELLQAQKIDVEKHV-----------------QSQKREMRERMSEV-------TKQLLE--------SYDIEDVRS 1121
Cdd:pfam10174 308 LQTKLETLTNQNSDCKQHIevlkesltakeqraailQTEVDALRLRLEEKesflnkkTKQLQDlteekstlAGEIRDLKD 387
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1122 RLSVEDLEhlnedgelwfaYEGLKKATRVLeshfQSQKDCYEKEIEGLNFKVVHLSQEINH-------LQKLFREETDIN 1194
Cdd:pfam10174 388 MLDVKERK-----------INVLQKKIENL----QEQLRDKDKQLAGLKERVKSLQTDSSNtdtalttLEEALSEKERII 452
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1195 ESIRHEVTRltsenmmipDFKQQISELERQKQDLESrLKEQAEKIEGKLEEPFSHLNRIREEERMQGRAP---HPFLRAV 1271
Cdd:pfam10174 453 ERLKEQRER---------EDRERLEELESLKKENKD-LKEKVSALQPELTEKESSLIDLKEHASSLASSGlkkDSKLKSL 522
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1272 EAQSEMHPEGKERLVGAIHEPHEAIKFPKKQPEAEEEVeSILQQEASRLSLEK--------------RDLEEELDMKDRM 1337
Cdd:pfam10174 523 EIAVEQKKEECSKLENQLKKAHNAEEAVRTNPEINDRI-RLLEQEVARYKEESgkaqaeverllgilREVENEKNDKDKK 601
|
570 580
....*....|....*....|....*
gi 568961004 1338 IRRLQD----QVKTLTKTTEKANHV 1358
Cdd:pfam10174 602 IAELESltlrQMKEQNKKVANIKHG 626
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
993-1138 |
2.29e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 49.09 E-value: 2.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 993 LTRQLFDDVQKEEQQRLVLEKGFELKTQAYEKQIESLREEIKALKDERSQLHHQLEEGQVTSDRLKGEVARLSKQAKT-- 1070
Cdd:COG2433 382 LEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARSEERRei 461
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568961004 1071 -----ISEFEKEIELLQAQKIDVEKHVQSQKREMrERMSEVTKqLLESYDIEDVR--SRLSVEDLEHLNEDGELW 1138
Cdd:COG2433 462 rkdreISRLDREIERLERELEEERERIEELKRKL-ERLKELWK-LEHSGELVPVKvvEKFTKEAIRRLEEEYGLK 534
|
|
| Laminin_I |
pfam06008 |
Laminin Domain I; coiled-coil structure. It has been suggested that the domains I and II from ... |
897-1118 |
2.30e-05 |
|
Laminin Domain I; coiled-coil structure. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure.
Pssm-ID: 310534 [Multi-domain] Cd Length: 258 Bit Score: 47.79 E-value: 2.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 897 KLEDQNRENHGLVEKLTSLAALRVGDLEKVQKLEAELEKAATHRHSYEEKGRRYRDTVEERLSKLQKHNAELELQRERAE 976
Cdd:pfam06008 41 QIEILEKELSSLAQETEELQKKATQTLAKAQQVNAESERTLGHAKELAEAIKNLIDNIKEINEKVATLGENDFALPSSDL 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 977 QMLQEKSEELKEKMDklTRQLFDDVQKEEQQrlvLEKGFELKTQAyEKQIESLREEIKALKDersQLHHQLEEgqvTSDR 1056
Cdd:pfam06008 121 SRMLAEAQRMLGEIR--SRDFGTQLQNAEAE---LKAAQDLLSRI-QTWFQSPQEENKALAN---ALRDSLAE---YEAK 188
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568961004 1057 LKGEVARLSK-QAKTisefeKEIELLQAQKIDVEKHVQSQKREMRERMSEVTKQLLESYDIED 1118
Cdd:pfam06008 189 LSDLRELLREaAAKT-----RDANRLNLANQANLREFQRKKEEVSEQKNQLEETLKTARDSLD 246
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
721-1109 |
2.66e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.00 E-value: 2.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 721 LHRLIQDSNQYQFGRTKIFFRAGQVAYLEKLRLDKLRQDCIMIQKHVRGWLQRRKFLRERQAALT--IQRYFRGQQTVRK 798
Cdd:COG4717 148 LEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEeeLEEAQEELEELEE 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 799 AITATAlKEAWAAIILQKycrgyLVRNLYQLIRVATITIQAHTRGFLARRRYR--KLLQEHKAVILqkYARAWLARRRFQ 876
Cdd:COG4717 228 ELEQLE-NELEAAALEER-----LKEARLLLLIAAALLALLGLGGSLLSLILTiaGVLFLVLGLLA--LLFLLLAREKAS 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 877 NIRRFvLNIQLTYRVQRLQKKLEDQNRENHGLVEKLT-SLAALRVGDLEKVQKLEAELEKAathrhsyeEKGRRYRDTVE 955
Cdd:COG4717 300 LGKEA-EELQALPALEELEEEELEELLAALGLPPDLSpEELLELLDRIEELQELLREAEEL--------EEELQLEELEQ 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 956 ERLSKLQKHNAELELQRERAEQMLQEKsEELKEKMDKLTRQLfddvqkEEQQRLVLEKGFELKTQAYEKQIESLREEIKA 1035
Cdd:COG4717 371 EIAALLAEAGVEDEEELRAALEQAEEY-QELKEELEELEEQL------EELLGELEELLEALDEEELEEELEELEEELEE 443
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568961004 1036 LKDERSQLHHQLEEgqvtsdrLKGEVARLSKQaKTISEFEKEIELLQAQKIDVEKHVQSQK--REMRERMSEVTKQ 1109
Cdd:COG4717 444 LEEELEELREELAE-------LEAELEQLEED-GELAELLQELEELKAELRELAEEWAALKlaLELLEEAREEYRE 511
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
895-1285 |
3.71e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 48.56 E-value: 3.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 895 QKKLEDQNRENHGLVEKLTSLAALRVGDLE----KVQKLEAELEKAATHRHSYEEKGRRYRDTVE-ERL--SKLQKHNAE 967
Cdd:pfam05483 417 DEKLLDEKKQFEKIAEELKGKEQELIFLLQarekEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEkEKLknIELTAHCDK 496
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 968 LELQRERAEQMLQEKSEELKEKMDKLtrqlfDDVQKEEQQRLVLEKGFELKTQAYEKQIESLREEIKALKDErsqLHHQL 1047
Cdd:pfam05483 497 LLLENKELTQEASDMTLELKKHQEDI-----INCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDE---VKCKL 568
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1048 EEGQVTSDRLKGEVARLSKQAKTI----SEFEKEIEllqaQKIDVEKHVQSQKREMRERMSEVTKQlLESYDIEDVRSRL 1123
Cdd:pfam05483 569 DKSEENARSIEYEVLKKEKQMKILenkcNNLKKQIE----NKNKNIEELHQENKALKKKGSAENKQ-LNAYEIKVNKLEL 643
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1124 SVEDLEHlnedgelwfayeglkkatrvlesHFQSQKDCYEKEIEGLNFKVVHLSQEINHLQKLFRE----ETDINESIRH 1199
Cdd:pfam05483 644 ELASAKQ-----------------------KFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEavklQKEIDKRCQH 700
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1200 EVTRLTSenmMIPDFKQQISELERQKqDLESRLKEQAEKIEGKLEEPF-SHLNRIREEermqgraphpfLRAVEAQSEMH 1278
Cdd:pfam05483 701 KIAEMVA---LMEKHKHQYDKIIEER-DSELGLYKNKEQEQSSAKAALeIELSNIKAE-----------LLSLKKQLEIE 765
|
....*..
gi 568961004 1279 PEGKERL 1285
Cdd:pfam05483 766 KEEKEKL 772
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
846-1049 |
4.15e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 4.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 846 ARRRYRKLLQEH-KAVILQKYARAWLARRRFQNIRRFVLNIQ-----LTYRVQRLQKKLEDQNRENHGLVEKLTSLAALR 919
Cdd:COG4913 260 LAERYAAARERLaELEYLRAALRLWFAQRRLELLEAELEELRaelarLEAELERLEARLDALREELDELEAQIRGNGGDR 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 920 VGDLEK-VQKLEAELEKAATHRHSYEEKGRRYRDTVEERLsklqkhnAELELQRERAEQMLQEKSEELKEkmdkLTRQLF 998
Cdd:COG4913 340 LEQLEReIERLERELEERERRRARLEALLAALGLPLPASA-------EEFAALRAEAAALLEALEEELEA----LEEALA 408
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 568961004 999 DDVQKEEQQRlvlekgfelktqayeKQIESLREEIKALKDERSQLHHQLEE 1049
Cdd:COG4913 409 EAEAALRDLR---------------RELRELEAEIASLERRKSNIPARLLA 444
|
|
| MAP7 |
pfam05672 |
MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is ... |
890-1009 |
4.35e-05 |
|
MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent.
Pssm-ID: 461709 [Multi-domain] Cd Length: 153 Bit Score: 45.42 E-value: 4.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 890 RVQRLQKKLEDQNR-----ENHGLVEKLTSLAAlrvgdlEKVQKLEAELEKAATHRH-SYEEKGRRYRDTVEERLSKLQK 963
Cdd:pfam05672 21 RQAREQREREEQERlekeeEERLRKEELRRRAE------EERARREEEARRLEEERRrEEEERQRKAEEEAEEREQREQE 94
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 568961004 964 HNAELELQRERAEQMLQEKSEELKEKMDKLTrqlfddvQKEEQQRL 1009
Cdd:pfam05672 95 EQERLQKQKEEAEAKAREEAERQRQEREKIM-------QQEEQERL 133
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
764-1329 |
4.82e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.39 E-value: 4.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 764 QKHVRGWLQRRKFLRERQAALTIQRyfRGQQTVRKAITAT--ALKEAWAAIILQKYCRGYLVRNLYQLIRVATITIQAHT 841
Cdd:COG1196 224 ELEAELLLLKLRELEAELEELEAEL--EELEAELEELEAElaELEAELEELRLELEELELELEEAQAEEYELLAELARLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 842 RGflaRRRYRKLLQEHKAVILQKYARawLARRRFQNIRRFVLNIQLTYRVQRLQKKLEDQNRENHGLVEKLTSLAALRVG 921
Cdd:COG1196 302 QD---IARLEERRRELEERLEELEEE--LAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 922 DLEKVQKL---EAELEKAATHRHSYEEKGRRYRDTVEERLSKLQKHNAELELQRERAEQMLQEKSEELKEKMDKLTRQLF 998
Cdd:COG1196 377 AEEELEELaeeLLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEE 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 999 DDVQKEEQQRLVLEKGFELKTQAYEKQIESLREEIKALKDERSQLHHQLEEGQVTSDRLKGEVARLSKQAKTISEFEKEI 1078
Cdd:COG1196 457 EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAY 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1079 E------LLQAQKIDVEKHVQSQKREM----RERMSEVTKQLLesyDIEDVRSRLSVEDLEHLNEDGELWFAYEglkkat 1148
Cdd:COG1196 537 EaaleaaLAAALQNIVVEDDEVAAAAIeylkAAKAGRATFLPL---DKIRARAALAAALARGAIGAAVDLVASD------ 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1149 rvleshfqsQKDCYEKEIEGLNFKVVHLSQEINHLQKLFREETDINE--SIRHEVTRLTSENMMIPDFKQQISELERQKQ 1226
Cdd:COG1196 608 ---------LREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRlrEVTLEGEGGSAGGSLTGGSRRELLAALLEAE 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1227 DLESRLKEQAEKIEGKLEEpfsHLNRIREEERMQGRAPHPFLRAVEAQSEMHPEGKERLVGAIHEPHEAIKFPKKQPEAE 1306
Cdd:COG1196 679 AELEELAERLAEEELELEE---ALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEE 755
|
570 580
....*....|....*....|...
gi 568961004 1307 EEVESILQQEASRLSLEKRDLEE 1329
Cdd:COG1196 756 LPEPPDLEELERELERLEREIEA 778
|
|
| Motor_domain |
cd01363 |
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the ... |
627-652 |
5.48e-05 |
|
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Some of the names do not match with what is given in the sequence list. This is because they are based on the current nomenclature by Kollmar/Sebe-Pedros.
Pssm-ID: 276814 [Multi-domain] Cd Length: 170 Bit Score: 45.41 E-value: 5.48e-05
10 20
....*....|....*....|....*.
gi 568961004 627 KFRSSLYLLMETLNATTPHYVRCIKP 652
Cdd:cd01363 145 IINESLNTLMNVLRATRPHFVRCISP 170
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
949-1351 |
5.66e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.12 E-value: 5.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 949 RYRDTVEERLSKLQKHNAELelqreraeQMLQEKSEELKEKMDKLTRQlfdDVQKEEQQRLVlekgfelktQAYEKQIES 1028
Cdd:TIGR00606 190 TLRQVRQTQGQKVQEHQMEL--------KYLKQYKEKACEIRDQITSK---EAQLESSREIV---------KSYENELDP 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1029 LREEIKALKDERSQLhHQLEEGQVTSDRLKGEVARLSKQAKTIseFEKEIELLQAQKIDVEKHVQSQKREMRERMSEVTK 1108
Cdd:TIGR00606 250 LKNRLKEIEHNLSKI-MKLDNEIKALKSRKKQMEKDNSELELK--MEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQR 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1109 QlLESYDIEdvRSRLSVEDLEHLNEDGELWFAYEGLKKATRVLESHFQSQKdcyekeieglnfkvvhLSQEINHLQKLFR 1188
Cdd:TIGR00606 327 E-LEKLNKE--RRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLA----------------TRLELDGFERGPF 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1189 EETDINESIRHEVTRLTSENMMIPDFKQQISELERQKQdlesrlkEQAEKIEGKLeepfSHLNRIREEERMQGRAPHPFL 1268
Cdd:TIGR00606 388 SERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQ-------EQADEIRDEK----KGLGRTIELKKEILEKKQEEL 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1269 RAVEAQSEMHPEGKERLvgaIHEPHEAIKFPKKQPEAEEE--VESILQQEASrLSLEKRDLEEELDMKDRMIRRLQDQVK 1346
Cdd:TIGR00606 457 KFVIKELQQLEGSSDRI---LELDQELRKAERELSKAEKNslTETLKKEVKS-LQNEKADLDRKLRKLDQEMEQLNHHTT 532
|
....*
gi 568961004 1347 TLTKT 1351
Cdd:TIGR00606 533 TRTQM 537
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
975-1258 |
5.82e-05 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 47.93 E-value: 5.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 975 AEQMLQ---EKSEELKEKMDKLtrqlfddVQKEEQQRL----VLEKGFELKTQ------AYEKQIESLREEIKALKDERS 1041
Cdd:pfam06160 91 IEELLDdieEDIKQILEELDEL-------LESEEKNREeveeLKDKYRELRKTllanrfSYGPAIDELEKQLAEIEEEFS 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1042 QLHHQLEEGQVTS-----DRLKGEVARLSKQAKTISEFEKEI---------EL------LQAQKIDVE-KHVQSQKREMR 1100
Cdd:pfam06160 164 QFEELTESGDYLEarevlEKLEEETDALEELMEDIPPLYEELktelpdqleELkegyreMEEEGYALEhLNVDKEIQQLE 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1101 ERMSEvTKQLLESYDIEDVRsrlsvEDLEHLNED-GELWFAYEGLKKATRVLESHFQSQKDcYEKEIEGLNFkvvHLSQE 1179
Cdd:pfam06160 244 EQLEE-NLALLENLELDEAE-----EALEEIEERiDQLYDLLEKEVDAKKYVEKNLPEIED-YLEHAEEQNK---ELKEE 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1180 INHLQKLFR---EETDINESIRHEVTRLTSENMMIpdfkqqISELERQKQ---DLESRLKE---QAEKIEGKLEEPFSHL 1250
Cdd:pfam06160 314 LERVQQSYTlneNELERVRGLEKQLEELEKRYDEI------VERLEEKEVaysELQEELEEileQLEEIEEEQEEFKESL 387
|
....*...
gi 568961004 1251 NRIREEER 1258
Cdd:pfam06160 388 QSLRKDEL 395
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
917-1383 |
6.29e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.21 E-value: 6.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 917 ALRVGDLEKVQKLEAELEKAATHRHSYEEKGRRYRDTVEERLSKLQKHNAELELQRERAEQMLQEKSEELKEKMDKLTRQ 996
Cdd:PTZ00121 1184 AEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMA 1263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 997 LF---------------DDVQKEEQQRLVLE--------KGFELKTQAYE-KQIESLREEIKALKDERSQLHHQLEEGQV 1052
Cdd:PTZ00121 1264 HFarrqaaikaeearkaDELKKAEEKKKADEakkaeekkKADEAKKKAEEaKKADEAKKKAEEAKKKADAAKKKAEEAKK 1343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1053 TSDRLKGEVARLSKQAKT-----------ISEFEKEIELLQAQKIDVEKHVQSQKR--EMRERMSEVTKQLLESYDIEDV 1119
Cdd:PTZ00121 1344 AAEAAKAEAEAAADEAEAaeekaeaaekkKEEAKKKADAAKKKAEEKKKADEAKKKaeEDKKKADELKKAAAAKKKADEA 1423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1120 RSRLS----VEDLEHLNEDG-----------ELWFAYEGLKKATRVLESHFQSQKDCYEKEIEGLNFKVVHLSQEINHLQ 1184
Cdd:PTZ00121 1424 KKKAEekkkADEAKKKAEEAkkadeakkkaeEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAK 1503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1185 KLFREETDINESIRHEVTRLTSENMMIPDFKQ--------------QISELERQKQDLESRLKEQAEKIE------GKLE 1244
Cdd:PTZ00121 1504 KAAEAKKKADEAKKAEEAKKADEAKKAEEAKKadeakkaeekkkadELKKAEELKKAEEKKKAEEAKKAEedknmaLRKA 1583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1245 EPFSHLNRIREEERMQGRAPHPFLRAVEAQSEMHPEGKERLVGAIHEPHEAIKFPKKQPEAE----------EEVESILQ 1314
Cdd:PTZ00121 1584 EEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEkkkaeelkkaEEENKIKA 1663
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568961004 1315 QEASRLSLEKRDLEEELDMKDRMIRRLQDQVKTLTKTTEKANHVHlPSGSREYLGMLEYKKEDEGKLIQ 1383
Cdd:PTZ00121 1664 AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELK-KKEAEEKKKAEELKKAEEENKIK 1731
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
986-1240 |
7.37e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 47.61 E-value: 7.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 986 LKEKMDKLTRQL-------FDDVqKEEQQRLVLEKGFELKTQAYEK--QIESLREEIKALKDERSQLHHQLEEgqvtsDR 1056
Cdd:PRK05771 14 LKSYKDEVLEALhelgvvhIEDL-KEELSNERLRKLRSLLTKLSEAldKLRSYLPKLNPLREEKKKVSVKSLE-----EL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1057 LKGEVARLSKQAKTISEFEKEIELLQaqkidvekhvqSQKREMRERMSEVTKqlLESYDIedvrsrlsveDLEHLNeDGE 1136
Cdd:PRK05771 88 IKDVEEELEKIEKEIKELEEEISELE-----------NEIKELEQEIERLEP--WGNFDL----------DLSLLL-GFK 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1137 LWFAYEGLKKATRVLESHFQSQKDCYEKEIEGLNFKVVHLSQEINHLQKLFrEETDINESIRHEVTRLTSENMMIPDFKQ 1216
Cdd:PRK05771 144 YVSVFVGTVPEDKLEELKLESDVENVEYISTDKGYVYVVVVVLKELSDEVE-EELKKLGFERLELEEEGTPSELIREIKE 222
|
250 260
....*....|....*....|....
gi 568961004 1217 QISELERQKQDLESRLKEQAEKIE 1240
Cdd:PRK05771 223 ELEEIEKERESLLEELKELAKKYL 246
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
976-1231 |
8.23e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 8.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 976 EQMLQEKS-----EELKEKMDKLTRqLFDDVQKEEQQRLVLEkgfELKTQAyeKQIESLREEIKALKDERSQLhhQLEEG 1050
Cdd:COG4913 215 EYMLEEPDtfeaaDALVEHFDDLER-AHEALEDAREQIELLE---PIRELA--ERYAAARERLAELEYLRAAL--RLWFA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1051 QVTSDRLKGEVARLskqaktisefEKEIELLQAQKidveKHVQSQKREMRERMSEVTKQLLESydiedvrsrlSVEDLEH 1130
Cdd:COG4913 287 QRRLELLEAELEEL----------RAELARLEAEL----ERLEARLDALREELDELEAQIRGN----------GGDRLEQ 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1131 LNEDgelwfayegLKKATRVLESHFQSQKDcYEKEIEGLNFKVVHLSQEINHLQKLFREETDINESIRHEVTRLTSENMM 1210
Cdd:COG4913 343 LERE---------IERLERELEERERRRAR-LEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEA 412
|
250 260
....*....|....*....|..
gi 568961004 1211 -IPDFKQQISELERQKQDLESR 1231
Cdd:COG4913 413 aLRDLRRELRELEAEIASLERR 434
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
704-1283 |
8.30e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 47.66 E-value: 8.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 704 TQQELSLSDKKEvcKVVLH--RLIQDSNQYQFGRTKIFFRagqvayleKLRLDKLRQDCIMIQKHVRGWLQRRKFLRERQ 781
Cdd:TIGR00618 282 TQERINRARKAA--PLAAHikAVTQIEQQAQRIHTELQSK--------MRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLH 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 782 AALTIQRYFRGQQTVRKAITATALKE-----AWAAIIlqkycrgYLVRNLYQLIRVATITIQAHTRGFLARRRYRKLLQE 856
Cdd:TIGR00618 352 SQEIHIRDAHEVATSIREISCQQHTLtqhihTLQQQK-------TTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQG 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 857 HKAVI-----LQKYARAWLARRRFQNIRRFVLNIQLTYRVQRLQKKLEDQNRENHGLVEKLTSLAALRVGDLEKVQKLEA 931
Cdd:TIGR00618 425 QLAHAkkqqeLQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPC 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 932 ELEKAATHRH-----SYE---------------EKGRRYRDTVEERLSKLQKHNAELELQRERA---EQMLQEKSEELKE 988
Cdd:TIGR00618 505 PLCGSCIHPNparqdIDNpgpltrrmqrgeqtyAQLETSEEDVYHQLTSERKQRASLKEQMQEIqqsFSILTQCDNRSKE 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 989 KMDKLtRQLFDDVQKEEQQRLVLEKgfelkTQAYEKQIESLREEIKALKDERSQLHHQLEEgqvtsdRLKGEVARLSKQA 1068
Cdd:TIGR00618 585 DIPNL-QNITVRLQDLTEKLSEAED-----MLACEQHALLRKLQPEQDLQDVRLHLQQCSQ------ELALKLTALHALQ 652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1069 KTISEfEKEIELLQAQKIDVEKHVQSQKREMRERMSEVTKQLLESYDIEDVRSRLSvEDLEHLnedGELWfayeglkkat 1148
Cdd:TIGR00618 653 LTLTQ-ERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLR-ELETHI---EEYD---------- 717
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1149 rvleSHFQSQKDCYEKEIEGLNFKVVHLSQEINHLQKLFREE----TDINESIRHEVTRLTSENMMIPDFKQQISELERQ 1224
Cdd:TIGR00618 718 ----REFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVlkarTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRL 793
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1225 KQDLESRLKEQAEKIEGKL---------------EEPFSHLNRIREEERMQGRAPHPFLR----------AVEAQSEMHP 1279
Cdd:TIGR00618 794 REEDTHLLKTLEAEIGQEIpsdedilnlqcetlvQEEEQFLSRLEEKSATLGEITHQLLKyeecskqlaqLTQEQAKIIQ 873
|
....
gi 568961004 1280 EGKE 1283
Cdd:TIGR00618 874 LSDK 877
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
867-1170 |
8.60e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 47.64 E-value: 8.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 867 RAWLARRRFQNIRRFVLNIQltYRVQRLQKKLEDQNRENHGLVEKLTS--------LAALR--------VGDLEKVQ-KL 929
Cdd:COG3096 286 RALELRRELFGARRQLAEEQ--YRLVEMARELEELSARESDLEQDYQAasdhlnlvQTALRqqekieryQEDLEELTeRL 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 930 EAE---LEKAATHRHSYEEKGRRYRDTVEERLSKLQKHNAELELQRERAEQMLQ-----EKSEEL--------------- 986
Cdd:COG3096 364 EEQeevVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTRAIQYQQavqalEKARALcglpdltpenaedyl 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 987 ---KEKMDKLTRQLFDDVQK---EEQQRLVLEKGFEL---------KTQAYEKQIESLRE--EIKALKDERSQLHHQL-- 1047
Cdd:COG3096 444 aafRAKEQQATEEVLELEQKlsvADAARRQFEKAYELvckiageveRSQAWQTARELLRRyrSQQALAQRLQQLRAQLae 523
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1048 ----EEGQVTSDRLKGEVA-RLSKQAKTISEFEKEIELLQAQKIDVEKHV----------QSQKREMRERMSEVTKQLLE 1112
Cdd:COG3096 524 leqrLRQQQNAERLLEEFCqRIGQQLDAAEELEELLAELEAQLEELEEQAaeaveqrselRQQLEQLRARIKELAARAPA 603
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568961004 1113 SYDIEDVRSRLSVEDLEHLNEDGELWFAYEGL---KKATRVLESHFQSQKDCYEKEIEGLN 1170
Cdd:COG3096 604 WLAAQDALERLREQSGEALADSQEVTAAMQQLlerEREATVERDELAARKQALESQIERLS 664
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
1021-1323 |
9.33e-05 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 46.44 E-value: 9.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1021 AYEKQIESLREEIKALKDERSQLHHQLEEGQVTSDRLKGEVARLSKQAKTISEFEKEIellqaqkidvekhvQSQKREMR 1100
Cdd:COG1340 12 ELEEKIEELREEIEELKEKRDELNEELKELAEKRDELNAQVKELREEAQELREKRDEL--------------NEKVKELK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1101 ERMSEVTKQLLESYD-IEDVRSRLSVEDLEHLNEDgelwfayeGLKKATRVLESHFQSQKDCYEKEIEGLNfKVVHLSQE 1179
Cdd:COG1340 78 EERDELNEKLNELREeLDELRKELAELNKAGGSID--------KLRKEIERLEWRQQTEVLSPEEEKELVE-KIKELEKE 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1180 INHLQKLFREETDINEsirhevtrLTSEnmmIPDFKQQISELERQKQDlesrLKEQAEKIEGKLEEPFSHLNRIREEERM 1259
Cdd:COG1340 149 LEKAKKALEKNEKLKE--------LRAE---LKELRKEAEEIHKKIKE----LAEEAQELHEEMIELYKEADELRKEADE 213
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568961004 1260 QGRAPHPFLRAVEAQSEMHPEGKERL------VGAIHEPHEAIKFPKKQPEAEEEVESILQ--QEASRLSLE 1323
Cdd:COG1340 214 LHKEIVEAQEKADELHEEIIELQKELrelrkeLKKLRKKQRALKREKEKEELEEKAEEIFEklKKGEKLTTE 285
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
910-1086 |
1.00e-04 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 47.06 E-value: 1.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 910 EKLTSLAALRVGDLEKVQKLEAELEKAATHRHSYE-EKGRRYRDTVEERLSKLQKHNAELELQRERAEQmlQEKSEELKE 988
Cdd:pfam09731 283 DDLNSLIAHAHREIDQLSKKLAELKKREEKHIERAlEKQKEELDKLAEELSARLEEVRAADEAQLRLEF--EREREEIRE 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 989 KMDKLTRQLFDDVQKEEQQRLvlekGFELKTQAYEKQIESLREEIKALKDERSQLHHQLEEgqvtsdrLKGEVARLSKQA 1068
Cdd:pfam09731 361 SYEEKLRTELERQAEAHEEHL----KDVLVEQEIELQREFLQDIKEKVEEERAGRLLKLNE-------LLANLKGLEKAT 429
|
170
....*....|....*...
gi 568961004 1069 KTISEFEKEIelLQAQKI 1086
Cdd:pfam09731 430 SSHSEVEDEN--RKAQQL 445
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
885-1332 |
1.22e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 47.09 E-value: 1.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 885 IQLTYRVQRLQKKLEDQNRENHGLVEKLTSLaalrVGDLEKVQKLEAELEKAathRHSYEEKGRRYRDTVEERLSKLQ-K 963
Cdd:pfam01576 639 LSLARALEEALEAKEELERTNKQLRAEMEDL----VSSKDDVGKNVHELERS---KRALEQQVEEMKTQLEELEDELQaT 711
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 964 HNAELEL---------QRERAEQMLQEKSEELKEKMDKLTRQLFDDVQKEEQQR---LVLEKGFELKTQAYEKQIESL-- 1029
Cdd:pfam01576 712 EDAKLRLevnmqalkaQFERDLQARDEQGEEKRRQLVKQVRELEAELEDERKQRaqaVAAKKKLELDLKELEAQIDAAnk 791
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1030 -REE-IKALKDERSQ---LHHQLEEGQVTSDRLKGEVARLSKQAKTIsefekEIELLQAQKI-----DVEKHVQSQKREM 1099
Cdd:pfam01576 792 gREEaVKQLKKLQAQmkdLQRELEEARASRDEILAQSKESEKKLKNL-----EAELLQLQEDlaaseRARRQAQQERDEL 866
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1100 RErmsEVTKQLLESYDIEDVRSRLS--VEDLEHLNEDgelwfayeglkkatrvLESHFQSQKDCYEK---EIEGLNfkvV 1174
Cdd:pfam01576 867 AD---EIASGASGKSALQDEKRRLEarIAQLEEELEE----------------EQSNTELLNDRLRKstlQVEQLT---T 924
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1175 HLSQEINHLQKlfreetdiNESIRhevtrltsenmmipdfkqqiSELERQKQDLESRLKEQAEKIEGK-------LEEPF 1247
Cdd:pfam01576 925 ELAAERSTSQK--------SESAR--------------------QQLERQNKELKAKLQEMEGTVKSKfkssiaaLEAKI 976
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1248 SHLNRIREEERMQGRAPHPFLRAVEA-------QSEMHPEGKERLVGAIHEPHEAIKFPKKQPEAEEEvesilqqEASRL 1320
Cdd:pfam01576 977 AQLEEQLEQESRERQAANKLVRRTEKklkevllQVEDERRHADQYKDQAEKGNSRMKQLKRQLEEAEE-------EASRA 1049
|
490
....*....|..
gi 568961004 1321 SLEKRDLEEELD 1332
Cdd:pfam01576 1050 NAARRKLQRELD 1061
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
995-1380 |
1.22e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.04 E-value: 1.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 995 RQLFDDVQKEEQQRLVLEKgfelktqayekqieslreEIKALKDERSQlhhQLEEGQvtsdrlKGEVARLSKQAKTISEF 1074
Cdd:pfam17380 287 RQQQEKFEKMEQERLRQEK------------------EEKAREVERRR---KLEEAE------KARQAEMDRQAAIYAEQ 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1075 EKeiellqaQKIDVEKHVQSQKREMRERMSEVTKQLLESYDIEDVRsrlsveDLEHLNedgelwfaYEGLKKATRVlesh 1154
Cdd:pfam17380 340 ER-------MAMERERELERIRQEERKRELERIRQEEIAMEISRMR------ELERLQ--------MERQQKNERV---- 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1155 fqsqkdcyEKEIEGLNfKVVHLSQEinhLQKLFREETDINESIRhevtrltsenmmipdfKQQISELERQKQDLESRLKE 1234
Cdd:pfam17380 395 --------RQELEAAR-KVKILEEE---RQRKIQQQKVEMEQIR----------------AEQEEARQREVRRLEEERAR 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1235 QAEKIEGKLEEPFSHLNRIREEERMQGRAPHPFLRAVEAQSEMHPEGKERLVGAIHEPHEAIKFPKK-----QPEAEEEV 1309
Cdd:pfam17380 447 EMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERkrkllEKEMEERQ 526
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568961004 1310 ESILQQEASRLSLEKRDLEEEldMKDRmiRRLQDQVKtltKTTEKANHVHLPSGSREylgMLEYKKEDEGK 1380
Cdd:pfam17380 527 KAIYEEERRREAEEERRKQQE--MEER--RRIQEQMR---KATEERSRLEAMERERE---MMRQIVESEKA 587
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
776-1036 |
1.23e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.24 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 776 FLRERQAALTIQRYFRGQQTVRKAITATALKEAWAAIILQKYCRGYLVRNLYQLIRV-----------ATITIQAHTRGF 844
Cdd:COG1196 506 FLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAieylkaakagrATFLPLDKIRAR 585
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 845 LARRRYRKLLQEHKAVILQKYARAWLARRRFQNIRRFVLNIQLT-------YRVQRLQKKLEDQNRENHGLVEKLTSLAA 917
Cdd:COG1196 586 AALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAarleaalRRAVTLAGRLREVTLEGEGGSAGGSLTGG 665
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 918 LRVGDLEKVQKLEAELEKAATHRHSYEEKGRRYRDTVEERLSKLQKHNAELELQRERAEQMLQEKSEELKEkmdklTRQL 997
Cdd:COG1196 666 SRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREE-----LLEE 740
|
250 260 270
....*....|....*....|....*....|....*....
gi 568961004 998 FDDVQKEEQQRLVLEKGFELKTQAYEKQIESLREEIKAL 1036
Cdd:COG1196 741 LLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
845-1137 |
1.28e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.89 E-value: 1.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 845 LARRRYRKLLQEHKAVILQKYARAWLARRRFQNIRRFVLNIQLTYRVQRLQKKLEDQNRENHGLVEKLTSLaalrvgdLE 924
Cdd:pfam02463 185 LAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIES-------SK 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 925 KVQKLEAELEKaatHRHSYEEKGRRYRDTVEERLSKLQKHNAELELQRERAEQMLQEKSEELKEKMDKLTRQLFDDVQKE 1004
Cdd:pfam02463 258 QEIEKEEEKLA---QVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEK 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1005 EQ--QRLVLEKGFELKTQAYEKQIESLREEIKAL---KDERSQLHHQLEEGQVTSDRLKGEVarLSKQAKTISEFEKEIE 1079
Cdd:pfam02463 335 EEieELEKELKELEIKREAEEEEEEELEKLQEKLeqlEEELLAKKKLESERLSSAAKLKEEE--LELKSEEEKEAQLLLE 412
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 568961004 1080 LLQAQKIDVEKHVQSQKREmrermSEVTKQLLESYDIEDVRSRLSVEDLEHLNEDGEL 1137
Cdd:pfam02463 413 LARQLEDLLKEEKKEELEI-----LEEEEESIELKQGKLTEEKEELEKQELKLLKDEL 465
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
870-1255 |
1.51e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 46.76 E-value: 1.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 870 LARRRFQNIRRFVlnIQLTYRVQRLQKKLEDQ-NRENHGLVEKLTSLAA-LRVGDLEKVQKLEAELEKAATHRhsyEEKG 947
Cdd:pfam12128 643 FARTALKNARLDL--RRLFDEKQSEKDKKNKAlAERKDSANERLNSLEAqLKQLDKKHQAWLEEQKEQKREAR---TEKQ 717
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 948 RRYRDTVEERLSKLQKHNAELELQRERAEQMLQEKSEELKEKMDKLtrqlfdDVqkEEQQRLVLEKGFELKTQAYEkQIE 1027
Cdd:pfam12128 718 AYWQVVEGALDAQLALLKAAIAARRSGAKAELKALETWYKRDLASL------GV--DPDVIAKLKREIRTLERKIE-RIA 788
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1028 SLREEIKALKD--------ERSQLHHQLEEGQVTSDRLKGEVARLSKQAKT-ISEFEKEIELLQAQKIDVEKHVQSQKRE 1098
Cdd:pfam12128 789 VRRQEVLRYFDwyqetwlqRRPRLATQLSNIERAISELQQQLARLIADTKLrRAKLEMERKASEKQQVRLSENLRGLRCE 868
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1099 MR------------ERMSEVTKQLLESYDIEDVRSRLSvEDLEHLNEDgelwFAYEGLKKATRVLESHFQSqkdcYEKEI 1166
Cdd:pfam12128 869 MSklatlkedanseQAQGSIGERLAQLEDLKLKRDYLS-ESVKKYVEH----FKNVIADHSGSGLAETWES----LREED 939
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1167 EGLNFKVVHLsqeiNHLQKLFREETDINESIRHEVTRLTSENMMIpdFKQQISELERQKQDLESRLKEQAEKIEGKLEEP 1246
Cdd:pfam12128 940 HYQNDKGIRL----LDYRKLVPYLEQWFDVRVPQSIMVLREQVSI--LGVDLTEFYDVLADFDRRIASFSRELQREVGEE 1013
|
....*....
gi 568961004 1247 fSHLNRIRE 1255
Cdd:pfam12128 1014 -AFFEGVSE 1021
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
958-1350 |
1.77e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.30 E-value: 1.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 958 LSKLQKHNAELELQRERAEQMLQEKSEELKEKMDKLTRQLfDDVQKEEQQRLVLEKGFElktqAYEKQIESLREEIKALK 1037
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKE-EEYAELQEELEELEEELE----ELEAELEELREELEKLE 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1038 DERsQLHHQLEEGQVTSDRLKGEVAR---LSKQAKTISEFEKEIELLQAQKIDVEKHVQSQKREMRERMSEVTKQLLESY 1114
Cdd:COG4717 123 KLL-QLLPLYQELEALEAELAELPERleeLEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEEL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1115 D------------IEDVRSRLSV--EDLEHLNEDGELWFAYEGLKKATRVLE------SHFQSQKDCYEKEIEGLNFKVV 1174
Cdd:COG4717 202 EelqqrlaeleeeLEEAQEELEEleEELEQLENELEAAALEERLKEARLLLLiaaallALLGLGGSLLSLILTIAGVLFL 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1175 HLSQEINHLQKLFREETDINESI-------------RHEVTRLTSENMMIPDFK-----------QQISELERQKQDLES 1230
Cdd:COG4717 282 VLGLLALLFLLLAREKASLGKEAeelqalpaleeleEEELEELLAALGLPPDLSpeellelldriEELQELLREAEELEE 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1231 RLKEQAEKIE----------GKLEEPFSHLNRIREEERMQGRaphpfLRAVEAQSEMHPEGKERLVGAIHEP---HEAIK 1297
Cdd:COG4717 362 ELQLEELEQEiaallaeagvEDEEELRAALEQAEEYQELKEE-----LEELEEQLEELLGELEELLEALDEEeleEELEE 436
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 568961004 1298 FPKKQPEAEEEVESiLQQEASRLSLEKRDLEE--ELDMKDRMIRRLQDQVKTLTK 1350
Cdd:COG4717 437 LEEELEELEEELEE-LREELAELEAELEQLEEdgELAELLQELEELKAELRELAE 490
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
974-1332 |
2.02e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 46.32 E-value: 2.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 974 RAEQMLQEKSEEL---KEKMDKLTRQLFDDVQKEEQ---QRLVLEKGFELKTQAYeKQIESLREEIKALKDERSQLHHQL 1047
Cdd:pfam01576 2 RQEEEMQAKEEELqkvKERQQKAESELKELEKKHQQlceEKNALQEQLQAETELC-AEAEEMRARLAARKQELEEILHEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1048 EegqvtsdrlkgevARLskqaktisefEKEIELLQaqkidvekHVQSQKREMRERMSEVTKQLLESydiEDVRSRLSved 1127
Cdd:pfam01576 81 E-------------SRL----------EEEEERSQ--------QLQNEKKKMQQHIQDLEEQLDEE---EAARQKLQ--- 123
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1128 LEHLNEDGELwfayEGLKKATRVLE---SHFQSQKDCYEKEIEGLNFKVVHLSQEINHLQKLfreetdineSIRHEvtrl 1204
Cdd:pfam01576 124 LEKVTTEAKI----KKLEEDILLLEdqnSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKL---------KNKHE---- 186
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1205 tsenMMIPDFKQQISELERQKQDLEsRLKEQAEKIEGKLEEPFSHLNRIREEERMQGRAPHPFLRAVEAQSEMHPEGKER 1284
Cdd:pfam01576 187 ----AMISDLEERLKKEEKGRQELE-KAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNN 261
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 568961004 1285 LVGAIHEPHEAIKfpkkqpEAEEEVESilqQEASRLSLEK--RDLEEELD 1332
Cdd:pfam01576 262 ALKKIRELEAQIS------ELQEDLES---ERAARNKAEKqrRDLGEELE 302
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
875-1251 |
2.09e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 46.58 E-value: 2.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 875 FQNIRRFVLNIQLTYR-VQRLQKKLED--QNRENHGLVEKLTSLAALRvGDLEKVQKLEAELEKAATHRHSYEEKGRRYR 951
Cdd:TIGR01612 1442 FKNADENNENVLLLFKnIEMADNKSQHilKIKKDNATNDHDFNINELK-EHIDKSKGCKDEADKNAKAIEKNKELFEQYK 1520
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 952 DTVEERLSKLqkhnAELELQ------RERAEQMLQE----------KSEELKEKMDKLTRQLF---DDVQKEEQQ----- 1007
Cdd:TIGR01612 1521 KDVTELLNKY----SALAIKnkfaktKKDSEIIIKEikdahkkfilEAEKSEQKIKEIKKEKFrieDDAAKNDKSnkaai 1596
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1008 --RLVLEKgFE---LKTQAYEKQIESLREEIKALKDERSQL-----HHQLEEGQVTSDRLKGEVARLSKQAKTISEFEKE 1077
Cdd:TIGR01612 1597 diQLSLEN-FEnkfLKISDIKKKINDCLKETESIEKKISSFsidsqDTELKENGDNLNSLQEFLESLKDQKKNIEDKKKE 1675
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1078 IELLQAQ----KIDVEKHVQSQKREMRERMSEV----------TKQLLESyDIEDVRSRLSVEDLEHLNEDGElwfayeg 1143
Cdd:TIGR01612 1676 LDELDSEiekiEIDVDQHKKNYEIGIIEKIKEIaiankeeiesIKELIEP-TIENLISSFNTNDLEGIDPNEK------- 1747
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1144 lkkatrvLESHFQSQKDCYEKEIEGLNFKVvhlsqeiNHLQKLFREETDINEsIRHevTRLTSENmmipDFKQQISELER 1223
Cdd:TIGR01612 1748 -------LEEYNTEIGDIYEEFIELYNIIA-------GCLETVSKEPITYDE-IKN--TRINAQN----EFLKIIEIEKK 1806
|
410 420
....*....|....*....|....*...
gi 568961004 1224 QKQDLESRLKEQAEKIEGKLEEPFSHLN 1251
Cdd:TIGR01612 1807 SKSYLDDIEAKEFDRIINHFKKKLDHVN 1834
|
|
| ATG16 |
pfam08614 |
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for ... |
924-1082 |
2.24e-04 |
|
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for eukaryotic cells. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. ATG16 (also known as Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway.
Pssm-ID: 462536 [Multi-domain] Cd Length: 176 Bit Score: 43.77 E-value: 2.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 924 EKVQKLEAELEKAATHRHSY-EEKGRRYRDTVEERLSKLQKHNAEL-ELQRERAE--QMLQEKSEELKEKMDKLTRQlfd 999
Cdd:pfam08614 21 AENAKLQSEPESVLPSTSSSkLSKASPQSASIQSLEQLLAQLREELaELYRSRGElaQRLVDLNEELQELEKKLRED--- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1000 dvqkeeqqrlvlekgfelktqayEKQIESLREEIKALKDERSQLHHQLEEGQVTSDRLKGEVA----RLSKQAKTISEFE 1075
Cdd:pfam08614 98 -----------------------ERRLAALEAERAQLEEKLKDREEELREKRKLNQDLQDELValqlQLNMAEEKLRKLE 154
|
....*...
gi 568961004 1076 KE-IELLQ 1082
Cdd:pfam08614 155 KEnRELVE 162
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
922-1129 |
2.27e-04 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 45.29 E-value: 2.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 922 DLEKVQKLEAELEKAATHRHSY----EEKGRRYRDTVEERlsklqKHNAELELQRERAEQMLQEKSEELKEKMDKLTRQL 997
Cdd:pfam13868 4 NSDELRELNSKLLAAKCNKERDaqiaEKKRIKAEEKEEER-----RLDEMMEEERERALEEEEEKEEERKEERKRYRQEL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 998 FDDVQKEEQQRLVLEKGFELKTQAYEKQIESLREE----IKALKDERSQLHHQLEEGQVTSDRLKGEVARLSKQA-KTIS 1072
Cdd:pfam13868 79 EEQIEEREQKRQEEYEEKLQEREQMDEIVERIQEEdqaeAEEKLEKQRQLREEIDEFNEEQAEWKELEKEEEREEdERIL 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 568961004 1073 EFEKEIELLQAQKIDVEKHVQSQKREMRERMSEVTKQLLESYD-IEDVRSRLSVEDLE 1129
Cdd:pfam13868 159 EYLKEKAEREEEREAEREEIEEEKEREIARLRAQQEKAQDEKAeRDELRAKLYQEEQE 216
|
|
| TPR_MLP1_2 |
pfam07926 |
TPR/MLP1/MLP2-like protein; The sequences featured in this family are similar to a region of ... |
924-1049 |
2.35e-04 |
|
TPR/MLP1/MLP2-like protein; The sequences featured in this family are similar to a region of human TPR protein and to yeast myosin-like proteins 1 (MLP1) and 2 (MLP2). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores. TPR is thought to be a component of nuclear pore complex- attached intra-nuclear filaments, and is implicated in nuclear protein import. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerization of kinase domains or by targeting these kinases to the nuclear pore complex. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity.
Pssm-ID: 462316 [Multi-domain] Cd Length: 129 Bit Score: 42.63 E-value: 2.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 924 EKVQKLEAELEKAATHRHSYEEKGRRYRDTVEE--RLSK---------LQKHNAEL-ELQRERAE-QMLQEKSEELKEKM 990
Cdd:pfam07926 1 AELSSLQSEIKRLKEEAADAEAQLQKLQEDLEKqaEIAReaqqnyereLVLHAEDIkALQALREElNELKAEIAELKAEA 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 568961004 991 DKLTRQLfddvqkeeqqrLVLEKGFELKTQAYEKQIESLREEIKALKDERSQLHHQLEE 1049
Cdd:pfam07926 81 ESAKAEL-----------EESEESWEEQKKELEKELSELEKRIEDLNEQNKLLHDQLES 128
|
|
| Myo5p-like_CBD_Rasip1 |
cd15472 |
cargo binding domain of myosin 5-like of Ras-interacting protein 1; Ras-interacting protein 1 ... |
1403-1682 |
2.40e-04 |
|
cargo binding domain of myosin 5-like of Ras-interacting protein 1; Ras-interacting protein 1 (Rasip1 or RAIN) is an effector of the small G protein Rap1 and plays an important role in endothelial junction stabilization. Rasip1, like afadin, is a multi domain protein, that contains beside a myosin5-like CBD, a Ras-associated domain and a PDZ domain.
Pssm-ID: 271256 Cd Length: 366 Bit Score: 45.34 E-value: 2.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1403 PAHILFMCVRYADSLNDANMLKSLMNSAINGIKHVV----KE----HFE-----------------DLEMLSFWLSNT-- 1455
Cdd:cd15472 25 PAFLLCLCIQHSATHFEPGHFGKLLLKIAKRIQEIVwektKElaekQPEhqdpaslsllsiaelapDLQPLLFWMSNSie 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1456 --CHFLNCLKQYSGE-EEFMKYNSPQQNKNCLNNfDLTEYRQILSDVAIRIYHQFIIVMENNLQPIIvPGMLE------- 1525
Cdd:cd15472 105 llYFIQQKVPLYEQSmEEELDVGSKESLLSSTLT-ASEEAMTVLEEVIMYTFQQCVYYLTKTLYVAL-PALLDsnpftae 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1526 -YESLQGISGLkPTGFRKrsssiddtdaytMTSILQ---QLSyfysTMCQngLDPEIVRQAVKQLFYLVGAVTLNSLLLR 1601
Cdd:cd15472 183 eRESWSGGSRL-PEGVRR------------VLEIYQatlDLL----RQYQ--VHPEIASQMFAYLFFFSNASLFNQLMEK 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1602 KDMCSC---RKGMQIRCNISFLEEWLKDKNVqSSLAKETLEPLSQAAWLLQVKKTTDSDAKEIAQCCT--SLSAVQIIKI 1676
Cdd:cd15472 244 GSGGGFfqwSRGVQIRANLDLLLDWLQGAGL-GDLAEEFFRKLSSTVNLLATPKEQLLQMSWSSLRAEfpALNPAQLHHL 322
|
....*.
gi 568961004 1677 LNSYTP 1682
Cdd:cd15472 323 LRQYQL 328
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
924-1109 |
2.51e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.59 E-value: 2.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 924 EKVQKLEAELEKAathrhsyEEKGRRYRDTVEERLSKLQKHNAELELQRERAEQmLQEKSEELKEKMDKLTRQLFD---D 1000
Cdd:COG3883 23 KELSELQAELEAA-------QAELDALQAELEELNEEYNELQAELEALQAEIDK-LQAEIAEAEAEIEERREELGErarA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1001 VQKEEQQRLVLE-----KGFE--------LKT--QAYEKQIESLREEIKALKDERSQLHHQLEEGQVTSDRLKGEVARLS 1065
Cdd:COG3883 95 LYRSGGSVSYLDvllgsESFSdfldrlsaLSKiaDADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELE 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 568961004 1066 KQaktISEFEKEIELLQAQKIDVEKHVQSQKREMRERMSEVTKQ 1109
Cdd:COG3883 175 AQ---QAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAA 215
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
988-1122 |
2.72e-04 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 45.84 E-value: 2.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 988 EKMDKLTRQLfdDVQKEEQQRLVLEKgfelkTQAYEKQIESLREEIKALKDERSQLHHQLEEGQVTSDRLKGEVARLSKQ 1067
Cdd:COG0542 411 EELDELERRL--EQLEIEKEALKKEQ-----DEASFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEELEQR 483
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 568961004 1068 AKTISEFEKEIELLQAQKIDVEKHVQsqkremrermSEVTKQllesyDIEDVRSR 1122
Cdd:COG0542 484 YGKIPELEKELAELEEELAELAPLLR----------EEVTEE-----DIAEVVSR 523
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
924-1100 |
2.84e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 45.59 E-value: 2.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 924 EKVQKLEAELEKAATHRHSYEEKGRRYRDTVEERLSKLQKHNAELelqRERAEQMLQEKSEELKEKMDKLTRQLfddvqk 1003
Cdd:PRK00409 523 ASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKL---LEEAEKEAQQAIKEAKKEADEIIKEL------ 593
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1004 eeqQRLVLEKGFELKTQAYE---KQIESLREEIKALKDERSQLHHQLEEGQ---VTSDRLKGEVARLSKQAKTISEF--- 1074
Cdd:PRK00409 594 ---RQLQKGGYASVKAHELIearKRLNKANEKKEKKKKKQKEKQEELKVGDevkYLSLGQKGEVLSIPDDKEAIVQAgim 670
|
170 180 190
....*....|....*....|....*....|.
gi 568961004 1075 -----EKEIELLQAQKIDVEKHVQSQKREMR 1100
Cdd:PRK00409 671 kmkvpLSDLEKIQKPKKKKKKKPKTVKPKPR 701
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
966-1245 |
3.00e-04 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 45.62 E-value: 3.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 966 AELELQRERaeqmLQEKSEELKEKMDKLTRQLFDDVQKEEQQRLVLEKGFELKTQAYEKQIESLREEI-----------K 1034
Cdd:PLN03229 432 RELEGEVEK----LKEQILKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFskansqdqlmhP 507
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1035 ALKDERSQLHHQL-----EEGQVTSDRLKGEVARLSKQAKTISEFEKEIELLqaqKIDVEKHVQS--QKREMRERM---- 1103
Cdd:PLN03229 508 VLMEKIEKLKDEFnkrlsRAPNYLSLKYKLDMLNEFSRAKALSEKKSKAEKL---KAEINKKFKEvmDRPEIKEKMealk 584
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1104 SEVTKQLLESYDIEDvrsRLSVEDLEHLNEDGELWFAyEGLKKATRVLESHFQSQKDCYEKEI-EGLNFKVVHLSQEINH 1182
Cdd:PLN03229 585 AEVASSGASSGDELD---DDLKEKVEKMKKEIELELA-GVLKSMGLEVIGVTKKNKDTAEQTPpPNLQEKIESLNEEINK 660
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568961004 1183 LQKLFREETDIN---ESIRHEVTRLTSEnmmiPDF--KQQISELERQ-KQDL-----ESRLKEQAEKIEGKLEE 1245
Cdd:PLN03229 661 KIERVIRSSDLKskiELLKLEVAKASKT----PDVteKEKIEALEQQiKQKIaealnSSELKEKFEELEAELAA 730
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
890-1406 |
3.31e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.60 E-value: 3.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 890 RVQRLQKKLEDQNRENHGLVEklTSLAALRvGDL----EKVQKLEAELEKAATHRHSYEEKGRRYRDTVEERLSKLQkhn 965
Cdd:pfam12128 280 ERQETSAELNQLLRTLDDQWK--EKRDELN-GELsaadAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQ--- 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 966 AELELQRER------AEQMLQEKSEELKEKMD-KLTRQLFDDVQKEEQQRLVLEKGFELKTQAYEKQIESLREEIKA--- 1035
Cdd:pfam12128 354 SELENLEERlkaltgKHQDVTAKYNRRRSKIKeQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEAgkl 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1036 -LKDERSQLHHQLEEGQVTSDRLKGEVARLSKQAKTISEFEKEIELLQAQKIDVEKhVQSQKREMRERMSEVTKQL-LES 1113
Cdd:pfam12128 434 eFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFDERIERAREEQEAANAEVER-LQSELRQARKRRDQASEALrQAS 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1114 YDIEDVRSRLsvEDLEHLnedgelwfayegLKKATRVLESHFQSQKDCYEKEIEGLnfkvvhLSQEINHLQKLFREETDi 1193
Cdd:pfam12128 513 RRLEERQSAL--DELELQ------------LFPQAGTLLHFLRKEAPDWEQSIGKV------ISPELLHRTDLDPEVWD- 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1194 nESIRHEVT----RLTSENMMIPDFKQQISELERQKQDLESRLKEQAEKIEgKLEEPFSHLN-RIREEERMQGRAPHPFL 1268
Cdd:pfam12128 572 -GSVGGELNlygvKLDLKRIDVPEWAASEEELRERLDKAEEALQSAREKQA-AAEEQLVQANgELEKASREETFARTALK 649
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1269 RAVEAQSEMHPEGKErlvgaihephEAIKFPKKQPEAEEEVESILQQEASRLSLEKRDLEEELDMKDRMIRRLQDQVKTL 1348
Cdd:pfam12128 650 NARLDLRRLFDEKQS----------EKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAY 719
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*...
gi 568961004 1349 TKTTEKANHVHLPSGSREYLGMLEYKKEDEGKLIQNLILDLKPRGVVVNMIPGLPAHI 1406
Cdd:pfam12128 720 WQVVEGALDAQLALLKAAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREI 777
|
|
| HMMR_N |
pfam15905 |
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ... |
881-1043 |
3.66e-04 |
|
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464932 [Multi-domain] Cd Length: 329 Bit Score: 44.80 E-value: 3.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 881 FVLNIQLTYRVQRLQKKLEDQNRENHGLVEKLTSLAALRVGDLEKVQKLEAELEKAathrHSYEEKGRRYR---DTVEER 957
Cdd:pfam15905 176 MAKQEGMEGKLQVTQKNLEHSKGKVAQLEEKLVSTEKEKIEEKSETEKLLEYITEL----SCVSEQVEKYKldiAQLEEL 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 958 LSKLQKHNAELELQRERAEQMLQEKSEELKEKMDKLtrqlfddvqKEEQQRLVLEkgFELKTQAYEKQIESLREEIKALK 1037
Cdd:pfam15905 252 LKEKNDEIESLKQSLEEKEQELSKQIKDLNEKCKLL---------ESEKEELLRE--YEEKEQTLNAELEELKEKLTLEE 320
|
....*.
gi 568961004 1038 DERSQL 1043
Cdd:pfam15905 321 QEHQKL 326
|
|
| GBP_C |
cd16269 |
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal ... |
961-1030 |
4.20e-04 |
|
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal domain. Guanylate-binding proteins (GBPs) are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence, and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. This C-terminal domain has been shown to mediate inhibition of endothelial cell proliferation by inflammatory cytokines.
Pssm-ID: 293879 [Multi-domain] Cd Length: 291 Bit Score: 44.49 E-value: 4.20e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568961004 961 LQKHNAELELQRERAEQMLQEKSEELKEKMDKLTRQLFDD-----VQKEEQQRLVLEKGFELKTQAYEKQIESLR 1030
Cdd:cd16269 217 LEEQQRELEQKLEDQERSYEEHLRQLKEKMEEERENLLKEqeralESKLKEQEALLEEGFKEQAELLQEEIRSLK 291
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
960-1131 |
5.50e-04 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 44.24 E-value: 5.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 960 KLQKHNAELELQRERAEQMLQEkSEELKEKMDKLtrqlfDDVQKEEQQRLVlekgfelktqAYEKQIESLREEIKALKDE 1039
Cdd:smart00787 120 QLVKTFARLEAKKMWYEWRMKL-LEGLKEGLDEN-----LEGLKEDYKLLM----------KELELLNSIKPKLRDRKDA 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1040 RSQLHHQLEEG-----QVTSDRLKGEVARLSKQAKTISEFEKEIELLQAQKIDVEKHVQS---QKREMRERMSEVTKQLL 1111
Cdd:smart00787 184 LEEELRQLKQLedeleDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDltnKKSELNTEIAEAEKKLE 263
|
170 180
....*....|....*....|...
gi 568961004 1112 ES--YDIEDVRS-RLSVEDLEHL 1131
Cdd:smart00787 264 QCrgFTFKEIEKlKEQLKLLQSL 286
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
954-1109 |
5.69e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.38 E-value: 5.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 954 VEERLSKLQKHNAE------LELQRERAEQMLQEKSEELKEKMDKLTRQLFDDVQKEEQQRLVLEKGFELKTQAYEKQIE 1027
Cdd:PRK12704 24 VRKKIAEAKIKEAEeeakriLEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLE 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1028 SLREEIKALKDERSQLHHQLEEGQVTSDRLKGEVARLSKQAKTISEFEKEiellQAQKIDVEKhvqsQKREMRERMSEVT 1107
Cdd:PRK12704 104 LLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAE----EAKEILLEK----VEEEARHEAAVLI 175
|
..
gi 568961004 1108 KQ 1109
Cdd:PRK12704 176 KE 177
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
898-1354 |
5.96e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.04 E-value: 5.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 898 LEDQNRENHGLVEKLTSLAALRVGDLEKVQKLEAELEKAATHRHSYEEKGRRYRD--TVEERLSKLQ-KHNAELELQ--- 971
Cdd:TIGR00606 489 KAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDkmDKDEQIRKIKsRHSDELTSLlgy 568
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 972 ---RERAEQMLQEKSEELKEKMDKLtRQLFDDVQKEEQQRLVLEKGFELKT----------------QAYEKQIESLREE 1032
Cdd:TIGR00606 569 fpnKKQLEDWLHSKSKEINQTRDRL-AKLNKELASLEQNKNHINNELESKEeqlssyedklfdvcgsQDEESDLERLKEE 647
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1033 IKALKDERSQLHHQ-------LEEGQVTSDRLKGEVARLSKQAKTISEFEKEIE----LLQAQKIDVEKHVQSQKREMRE 1101
Cdd:TIGR00606 648 IEKSSKQRAMLAGAtavysqfITQLTDENQSCCPVCQRVFQTEAELQEFISDLQsklrLAPDKLKSTESELKKKEKRRDE 727
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1102 RMSEVTKQL----LESYDIEDVRSRLSVEDLEHLNEDGELwfayEGLKKATRVLESHFQSQKDCyekeieglnfkvvhlS 1177
Cdd:TIGR00606 728 MLGLAPGRQsiidLKEKEIPELRNKLQKVNRDIQRLKNDI----EEQETLLGTIMPEEESAKVC---------------L 788
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1178 QEINHLQKLFREETDINESIRHEVTRLTSEnmmipDFKQQISELERQKQDLESRLKEQAEKIE------GKLEEPFSHLN 1251
Cdd:TIGR00606 789 TDVTIMERFQMELKDVERKIAQQAAKLQGS-----DLDRTVQQVNQEKQEKQHELDTVVSKIElnrkliQDQQEQIQHLK 863
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1252 RIREE---ERMQgraphpfLRAVEAQSEMHPEGKERLVGAIHEPHEAIKFPKKQPEAEEEVESILQQEASRLSLEKRDLE 1328
Cdd:TIGR00606 864 SKTNElksEKLQ-------IGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSN 936
|
490 500
....*....|....*....|....*.
gi 568961004 1329 EELDMKDRMIRRLQDQVKTLTKTTEK 1354
Cdd:TIGR00606 937 KKAQDKVNDIKEKVKNIHGYMKDIEN 962
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1004-1255 |
6.64e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.37 E-value: 6.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1004 EEQQRLvlekgfeLKTQAYEKQIESLREEIKALKDERsqlhhqleegqvtsDRLKGEVARLSKQaktISEFEKEIELLQA 1083
Cdd:COG1579 4 EDLRAL-------LDLQELDSELDRLEHRLKELPAEL--------------AELEDELAALEAR---LEAAKTELEDLEK 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1084 QKIDVEKHVQsqkrEMRERMSEVTKQLLEsydiedVRSRLSVEDLEHlnedgELwfayEGLKKATRVLEshfqsqkdcyE 1163
Cdd:COG1579 60 EIKRLELEIE----EVEARIKKYEEQLGN------VRNNKEYEALQK-----EI----ESLKRRISDLE----------D 110
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1164 KEIEglnfkvvhLSQEINHLQKLFREETDINESIRHEVTRLTSEnmmipdFKQQISELERQKQDLESRLKEQAEKIEGKL 1243
Cdd:COG1579 111 EILE--------LMERIEELEEELAELEAELAELEAELEEKKAE------LDEELAELEAELEELEAEREELAAKIPPEL 176
|
250
....*....|..
gi 568961004 1244 eepFSHLNRIRE 1255
Cdd:COG1579 177 ---LALYERIRK 185
|
|
| DUF4670 |
pfam15709 |
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ... |
921-1112 |
7.66e-04 |
|
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.
Pssm-ID: 464815 [Multi-domain] Cd Length: 522 Bit Score: 44.17 E-value: 7.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 921 GDLEKVQKLEAELEKAATHRHSYEEKGRRYR---DTVEERLSKLQKHNAELELQR-------ERAEQMLQEKSEELKEKM 990
Cdd:pfam15709 307 GNMESEEERSEEDPSKALLEKREQEKASRDRlraERAEMRRLEVERKRREQEEQRrlqqeqlERAEKMREELELEQQRRF 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 991 D--KLTRQLFDDvqkEEQQRLVLEKGFELKTQAYE----KQIESLREEIKALKDERSQlhHQLEEGQVTSDRLKGEVARL 1064
Cdd:pfam15709 387 EeiRLRKQRLEE---ERQRQEEEERKQRLQLQAAQerarQQQEEFRRKLQELQRKKQQ--EEAERAEAEKQRQKELEMQL 461
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 568961004 1065 SKQAKTISEFEKEIEL-LQAQKIDVEKHVQSQKREMRERMSEVTKQLLE 1112
Cdd:pfam15709 462 AEEQKRLMEMAEEERLeYQRQKQEAEEKARLEAEERRQKEEEAARLALE 510
|
|
| MyosinXI_CBD |
cd15475 |
cargo binding domain of myosin XI; Class XI myosins are a plant specific group, homologous to ... |
1557-1709 |
7.76e-04 |
|
cargo binding domain of myosin XI; Class XI myosins are a plant specific group, homologous to class V myosins. C-terminal domain of Arabidopsis myosin XI has been shown to be homologous to the cargo-binding domain of yeast myosin V myo2p, which targets myosin to vacuole- and mitochondria, as well as secretory vesicle.
Pssm-ID: 271259 Cd Length: 326 Bit Score: 43.72 E-value: 7.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1557 SILQQLSYFYSTMCQNGLDPEIVRQAVKQLFYLVGAVTLNSLLLRKDMCSCRKGMQIRCNISFLEEW---LKDKNVQSSL 1633
Cdd:cd15475 154 SIIKSLNSLLSTLKENHVPPFLVQKIFTQVFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELELWcsqATEEYAGSSW 233
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568961004 1634 akETLEPLSQAAWLLQVKKTTDSDAKEIAQ-CCTSLSAVQIIKILNSYTpIDDFEKR-VNPSFVRKVQALLNNRGDSA 1709
Cdd:cd15475 234 --DELKHIRQAVGFLVIHQKSRKSYDEITNdLCPVLSVQQLYRICTMYW-DDKYGTQsVSPEVISSMRVLMTEDSNNA 308
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
891-1042 |
8.43e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.67 E-value: 8.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 891 VQRLQKKLEDQNRENHGLVEKLTSLAAlRVGDLE-KVQKLEAELEKAAthRHSYEEKGRRyrDTVE-------------- 955
Cdd:COG3883 46 LEELNEEYNELQAELEALQAEIDKLQA-EIAEAEaEIEERREELGERA--RALYRSGGSV--SYLDvllgsesfsdfldr 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 956 -ERLSKLQKHNAEL--ELQRERAE-----QMLQEKSEELKEKMDKLTRQLFD-DVQKEEQQRLVleKGFELKTQAYEKQI 1026
Cdd:COG3883 121 lSALSKIADADADLleELKADKAEleakkAELEAKLAELEALKAELEAAKAElEAQQAEQEALL--AQLSAEEAAAEAQL 198
|
170
....*....|....*.
gi 568961004 1027 ESLREEIKALKDERSQ 1042
Cdd:COG3883 199 AELEAELAAAEAAAAA 214
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
890-1060 |
1.01e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.88 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 890 RVQRLQKKLED--QNRENH--GLVEKLTSLAALRvgdlEKVQKLEAELE---KAATHRHSYEEKGRRYR----------- 951
Cdd:PRK02224 510 RIERLEERREDleELIAERreTIEEKRERAEELR----ERAAELEAEAEekrEAAAEAEEEAEEAREEVaelnsklaelk 585
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 952 ------DTVEERLSKLQKHNAELELQRERAEQmLQEKSEELKEKMDKL---TRQLFDDVQ-------KEEQQRL------ 1009
Cdd:PRK02224 586 erieslERIRTLLAAIADAEDEIERLREKREA-LAELNDERRERLAEKrerKRELEAEFDearieeaREDKERAeeyleq 664
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568961004 1010 VLEKGFELKTQAYE------------KQIESLREEIKALKDERSQL---HHQLEEGQVTSDRLKGE 1060
Cdd:PRK02224 665 VEEKLDELREERDDlqaeigavenelEELEELRERREALENRVEALealYDEAEELESMYGDLRAE 730
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
852-1166 |
1.09e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.88 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 852 KLLQEHKAVILQKYARAWLARRRFQNIRRFVLNIQLTYRVQRLQKKLEDQNRENHGLVEKLTSLAALRVGDLEKVQKLEA 931
Cdd:TIGR00606 785 KVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKS 864
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 932 ELEKAATHRHSYEEKGRR---YRDTVEERLSKLQKHNAELELQRERAEQMLQEKSEELKEKMDKLTRqlfddvqKEEQQR 1008
Cdd:TIGR00606 865 KTNELKSEKLQIGTNLQRrqqFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISS-------KETSNK 937
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1009 LVlekgfelktqayEKQIESLREEIKALKDERSQLHHQLEEGQvtSDRLKGEVARLSKQAKTISEFEKEIELLQAQKIDV 1088
Cdd:TIGR00606 938 KA------------QDKVNDIKEKVKNIHGYMKDIENKIQDGK--DDYLKQKETELNTVNAQLEECEKHQEKINEDMRLM 1003
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1089 EKHVQSQKREMRERMSEVTKQLLESyDIEDVRSRLSVEDLEhLNEDG--ELWFAYEGLKKATRVL---ESHFQSQKDCYE 1163
Cdd:TIGR00606 1004 RQDIDTQKIQERWLQDNLTLRKREN-ELKEVEEELKQHLKE-MGQMQvlQMKQEHQKLEENIDLIkrnHVLALGRQKGYE 1081
|
...
gi 568961004 1164 KEI 1166
Cdd:TIGR00606 1082 KEI 1084
|
|
| K-box |
pfam01486 |
K-box region; The K-box region is commonly found associated with SRF-type transcription ... |
973-1048 |
1.15e-03 |
|
K-box region; The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation.
Pssm-ID: 460228 [Multi-domain] Cd Length: 91 Bit Score: 39.75 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 973 ERAEQMLQEKSEELKEKMDKLTRQL------------FDDVQKEEQQrlvLEKGF----ELKTQAYEKQIESLREEIKAL 1036
Cdd:pfam01486 3 ENEQENWQQEAAKLKKEIENLQRSQrqllgedlsslsLKELQQLEQQ---LEKSLkrirSRKNQLLLEQIEELKKKERIL 79
|
90
....*....|..
gi 568961004 1037 KDERSQLHHQLE 1048
Cdd:pfam01486 80 QEENKELRKKLE 91
|
|
| TBCA |
pfam02970 |
Tubulin binding cofactor A; |
1144-1241 |
1.37e-03 |
|
Tubulin binding cofactor A;
Pssm-ID: 460769 [Multi-domain] Cd Length: 99 Bit Score: 39.80 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1144 LKKATRVLEsHFQSQKDCYEKEIEglnfkvvhlsQEINHLQKLFREETDINEsIRHEVTRLTSENMMIPDFKQQISEler 1223
Cdd:pfam02970 6 LKIKTGVVK-RLVKEEASYEKELE----------EQEARLEKLKADGADEYD-LKKQEEVLEETKAMIPDLKKRLEE--- 70
|
90
....*....|....*...
gi 568961004 1224 QKQDLESRLKEQAEKIEG 1241
Cdd:pfam02970 71 AVEDLEEFLEEEEDLGAD 88
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1129-1356 |
1.38e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 43.35 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1129 EHLNEDGELWFAYEGLKKATRVLESHFQSQKDCYEKEIEGLNFKVVHLSQEINHLqklfREETDINESIRHEVTRLTSEn 1208
Cdd:pfam07888 38 ECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQS----REKHEELEEKYKELSASSEE- 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1209 mmipdFKQQISELERQKQDLESRLKEQAEKIEGKLEEPfshLNRIREEERMQGRAPHPFLRAVEAQSEmhpegkerlvga 1288
Cdd:pfam07888 113 -----LSEEKDALLAQRAAHEARIRELEEDIKTLTQRV---LERETELERMKERAKKAGAQRKEEEAE------------ 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568961004 1289 ihepheaikfpKKQPEAEEEVEsilQQEASRLSLEKRDLEEELDMKDRMIRRLQDQVKTLTKTTEKAN 1356
Cdd:pfam07888 173 -----------RKQLQAKLQQT---EEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAH 226
|
|
| SHE3 |
pfam17078 |
SWI5-dependent HO expression protein 3; SWI5-dependent HO expression protein 3 (She3) is an ... |
884-1110 |
1.38e-03 |
|
SWI5-dependent HO expression protein 3; SWI5-dependent HO expression protein 3 (She3) is an RNA-binding protein that binds specific mRNAs, including the mRNA of Ash1, which is invalid in cell-fate determination. She3 acts as an adapter protein that docks the myosin motor Myo4p onto an Ash1-She2p ribonucleoprotein complex. She3 seems to bind to Myo4p and Shep2p via different domains.
Pssm-ID: 293683 [Multi-domain] Cd Length: 228 Bit Score: 42.03 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 884 NIQLTYRVQRLQKKLEDQNRENHGLVEKLTSLaalrvgdlekvqKLEAELEKAATHRhsyeeKGRRYRDtVEERLSKLQK 963
Cdd:pfam17078 19 NLQLTVQSQNLLSKLEIAQQKESKFLENLASL------------KHENDNLSSMLNR-----KERRLKD-LEDQLSELKN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 964 HNAELELQ----RERAEQmLQEKSEELKEKMDKLTRQLfdDVQKEEQQRLvlekgfelkTQAYEKQIESLREEIKALKDE 1039
Cdd:pfam17078 81 SYEELTESnkqlKKRLEN-SSASETTLEAELERLQIQY--DALVDSQNEY---------KDHYQQEINTLQESLEDLKLE 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1040 rsqLHHQLEE-GQVTSDRLKGEVARLS------KQAKTISEfEKEIELLQ-----AQKIDVEKHVQSQKrEMRERMSEVT 1107
Cdd:pfam17078 149 ---NEKQLENyQQRISSNDKDIDTKLDsynnkfKNLDNIYV-NKNNKLLTkldslAQLLDLPSWLNLYP-ESRNKILEYA 223
|
...
gi 568961004 1108 KQL 1110
Cdd:pfam17078 224 EKM 226
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
887-1060 |
1.55e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.56 E-value: 1.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 887 LTYRVQRLQKKLEDQNRENHGLVEKLTSLAA-LRVGDLeKVQKLEAELEKAathRHSYEEKGRRYRDTVEER-------L 958
Cdd:pfam05483 599 LKKQIENKNKNIEELHQENKALKKKGSAENKqLNAYEI-KVNKLELELASA---KQKFEEIIDNYQKEIEDKkiseeklL 674
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 959 SKLQKHNA----ELELQRErAEQMLQEKSEELKEKMDKLTRQlFDDVQKEEQQRLVLEKGfelKTQAYEKQIESLREEIK 1034
Cdd:pfam05483 675 EEVEKAKAiadeAVKLQKE-IDKRCQHKIAEMVALMEKHKHQ-YDKIIEERDSELGLYKN---KEQEQSSAKAALEIELS 749
|
170 180
....*....|....*....|....*.
gi 568961004 1035 ALKDERSQLHHQLEEGQVTSDRLKGE 1060
Cdd:pfam05483 750 NIKAELLSLKKQLEIEKEEKEKLKME 775
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
924-1085 |
1.60e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 43.23 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 924 EKVQKLEAELEKaathrhsyeekgrryrdTVEERLSKLQKhnaeLELQRERAEQMLQEKSEELKEKMDKLTRQLFDDVQK 1003
Cdd:PRK12704 64 EEIHKLRNEFEK-----------------ELRERRNELQK----LEKRLLQKEENLDRKLELLEKREEELEKKEKELEQK 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1004 EEQqrlVLEKGFELKtQAYEKQIESLrEEIKAL-KDE-RSQLHHQLEEgqvtsdRLKGEVARLskqaktISEFEKEIElL 1081
Cdd:PRK12704 123 QQE---LEKKEEELE-ELIEEQLQEL-ERISGLtAEEaKEILLEKVEE------EARHEAAVL------IKEIEEEAK-E 184
|
....
gi 568961004 1082 QAQK 1085
Cdd:PRK12704 185 EADK 188
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
952-1062 |
1.85e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 43.15 E-value: 1.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 952 DTVEERLSKLQKHNAELELQRERA----EQMLQEKSEELKEKMDKLTRQLFDDVQKEEQQRLVLEKGFELKTQAYEK--Q 1025
Cdd:COG0542 407 DSKPEELDELERRLEQLEIEKEALkkeqDEASFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEELEQRygK 486
|
90 100 110
....*....|....*....|....*....|....*..
gi 568961004 1026 IESLREEIKALKDERSQLHHQLEEgQVTSDrlkgEVA 1062
Cdd:COG0542 487 IPELEKELAELEEELAELAPLLRE-EVTEE----DIA 518
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
852-1127 |
1.95e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 43.11 E-value: 1.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 852 KLLQEHKAVILQKYA--RAWL------ARRRFQNIRRFVLNIqltyrvqrLQKKLEDQNRENHGLVEKLTSLAALRVGDL 923
Cdd:PTZ00108 980 DILKEFYLVRLDLYKkrKEYLlgklerELARLSNKVRFIKHV--------INGELVITNAKKKDLVKELKKLGYVRFKDI 1051
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 924 EKVQK---LEAELEKAATHRHSYEEKGRRYRDTVEE------------RLSKLQKHNAELELQRERAEQMLQEKSEEL-K 987
Cdd:PTZ00108 1052 IKKKSekiTAEEEEGAEEDDEADDEDDEEELGAAVSydyllsmpiwslTKEKVEKLNAELEKKEKELEKLKNTTPKDMwL 1131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 988 EKMDKLTRQLFDDVQKEEQQRLVLEKgFELKTQAYEKQIESLREEIKALKDERSQLHHQLEEGQVTSDRlKGEVARLSKQ 1067
Cdd:PTZ00108 1132 EDLDKFEEALEEQEEVEEKEIAKEQR-LKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSK-RVDSDEKRKL 1209
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1068 AKTISEFEKEIELLQAQKIDVEKHVQSQKREMRERMSEVTKQLLESYDIEDVRSRLSVED 1127
Cdd:PTZ00108 1210 DDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEG 1269
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
887-1110 |
2.01e-03 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 42.75 E-value: 2.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 887 LTYRVQRLQKKLEDQNRENHGLVEKLTSLAALrvgdlekVQKLEAELEKAATHRHSYEEKGRRYR---DTVEERLSKLQK 963
Cdd:pfam19220 88 LVARLAKLEAALREAEAAKEELRIELRDKTAQ-------AEALERQLAAETEQNRALEEENKALReeaQAAEKALQRAEG 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 964 HNAELELQRERAEQ---MLQEKSEELKEKMDKLTRQLFDDVQKEEQQR---LVLEKGFELKTQAYEKQIESLREEIKALK 1037
Cdd:pfam19220 161 ELATARERLALLEQenrRLQALSEEQAAELAELTRRLAELETQLDATRarlRALEGQLAAEQAERERAEAQLEEAVEAHR 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1038 DERSQLHHQLEEGQ---VTSDRLKGEVA---------------RLSKQAKTISEFEKEIELLQAQKIDVE---KHVQSQK 1096
Cdd:pfam19220 241 AERASLRMKLEALTaraAATEQLLAEARnqlrdrdeairaaerRLKEASIERDTLERRLAGLEADLERRTqqfQEMQRAR 320
|
250
....*....|....
gi 568961004 1097 REMRERMSEVTKQL 1110
Cdd:pfam19220 321 AELEERAEMLTKAL 334
|
|
| Caldesmon |
pfam02029 |
Caldesmon; |
971-1258 |
2.08e-03 |
|
Caldesmon;
Pssm-ID: 460421 [Multi-domain] Cd Length: 495 Bit Score: 42.55 E-value: 2.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 971 QRERAEQMLQEKSEELKEKMDkltrqlfDDVQKEEQQRLVLEKGFELKTQAYEKQIESLREEIKALKDERSQlhhQLEEG 1050
Cdd:pfam02029 13 RRAREERRRQKEEEEPSGQVT-------ESVEPNEHNSYEEDSELKPSGQGGLDEEEAFLDRTAKREERRQK---RLQEA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1051 QvtsDRLKGEVARLSKQAKTISEFEKEIELLQAQkiDVEKHVQSQKREMRERmsevtkqllesydiEDVRSRLSVEDLEH 1130
Cdd:pfam02029 83 L---ERQKEFDPTIADEKESVAERKENNEEEENS--SWEKEEKRDSRLGRYK--------------EEETEIREKEYQEN 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1131 LNEDGELWFAYEGLKKATRVLESHFQSQKDCYEKEIEGLNFK---------VVHLSQEINHL-QKLFREETDINESIRHE 1200
Cdd:pfam02029 144 KWSTEVRQAEEEGEEEEDKSEEAEEVPTENFAKEEVKDEKIKkekkvkyesKVFLDQKRGHPeVKSQNGEEEVTKLKVTT 223
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1201 VTRLTSENMMIPDFK---------QQISELERQKQDLESrlkEQAEKIEGKLEEP---FSHLNRIREEER 1258
Cdd:pfam02029 224 KRRQGGLSQSQEREEeaevfleaeQKLEELRRRRQEKES---EEFEKLRQKQQEAeleLEELKKKREERR 290
|
|
| DUF4515 |
pfam14988 |
Domain of unknown function (DUF4515); This family of proteins is found in bacteria and ... |
979-1185 |
2.40e-03 |
|
Domain of unknown function (DUF4515); This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 198 and 469 amino acids in length. There are two completely conserved L residues that may be functionally important.
Pssm-ID: 405647 [Multi-domain] Cd Length: 206 Bit Score: 41.29 E-value: 2.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 979 LQEKSEELKEKMDKLTRQLFDDVQKEEQQRLVLEkgfelktQAYEKQIESLREEIKALKDERSQLHHQLEEGQvtsdrlk 1058
Cdd:pfam14988 9 LAKKTEEKQKKIEKLWNQYVQECEEIERRRQELA-------SRYTQQTAELQTQLLQKEKEQASLKKELQALR------- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1059 gEVARLSKQAktisefEKEIELLQAQKIDVEKHVQSQKREMRERMSEvTKQLLESyDIEDVRSRLSVEDLEHlnedgELW 1138
Cdd:pfam14988 75 -PFAKLKESQ------EREIQDLEEEKEKVRAETAEKDREAHLQFLK-EKALLEK-QLQELRILELGERATR-----ELK 140
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 568961004 1139 FAYEGLK-KATRVLESHFQSQKdcyeKEIEGLNFKVVHLSQEINHLQK 1185
Cdd:pfam14988 141 RKAQALKlAAKQALSEFCRSIK----RENRQLQKELLQLIQETQALEA 184
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
984-1342 |
2.54e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 2.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 984 EELKEKMDKLTRQLFDDvQKEEQQRL--VL----EKGFEL--KTQAYeKQIESLREEIKalkdersqlHHQLEEGQVTSD 1055
Cdd:COG4913 158 RALKARLKKQGVEFFDS-FSAYLARLrrRLgigsEKALRLlhKTQSF-KPIGDLDDFVR---------EYMLEEPDTFEA 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1056 rlkgeVARLSKQAKTISEFEKEIELLQAQKidvekhvqsqkremrermsEVTKQLLESYD-IEDVRSRLSVedLEHLNED 1134
Cdd:COG4913 227 -----ADALVEHFDDLERAHEALEDAREQI-------------------ELLEPIRELAErYAAARERLAE--LEYLRAA 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1135 GELWFAYEGLKKATRVLESHfqsqkdcyEKEIEGLNFKVVHLSQEINHLQklfREETDINESIR-HEVTRLTsenmmipD 1213
Cdd:COG4913 281 LRLWFAQRRLELLEAELEEL--------RAELARLEAELERLEARLDALR---EELDELEAQIRgNGGDRLE-------Q 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1214 FKQQISELERQKQDLESRLKEQAEKiegkleepfshlnrireeermqgraphpfLRAVEAQSEMHPEGKERLVGAIHEph 1293
Cdd:COG4913 343 LEREIERLERELEERERRRARLEAL-----------------------------LAALGLPLPASAEEFAALRAEAAA-- 391
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 568961004 1294 eaikfpkkQPEAEEEVESILQQEASRLSLEKRDLEEELDMKDRMIRRLQ 1342
Cdd:COG4913 392 --------LLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLE 432
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
747-1069 |
2.74e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 42.65 E-value: 2.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 747 YLEKLRLDKLRQDCIMIQKHVRGWLQRRKFLRERQAALTIQRYFRGQQTVRKAITATALKEAWAAIILQKYCRGYLVRNL 826
Cdd:pfam02463 695 LRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEK 774
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 827 YqLIRVATITIQAHTRGFLARRRYRKLLQEHKAVILQKYARAWLarRRFQNIRRFVLNIQLTYRVQRLQKKLEDQNRENH 906
Cdd:pfam02463 775 E-LAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELL--EEEQLLIEQEEKIKEEELEELALELKEEQKLEKL 851
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 907 GLVEKLTSLAALRVGDLEKVQKLEAELEKAATHRHSYEEKGRRYRDTVEERLSKLQKHNAELELQRERAEQMLQE----- 981
Cdd:pfam02463 852 AEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEaeill 931
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 982 ----KSEELKEKMDKLTRQLFDDVQKEEQQRLVLEKGFELKtqayEKQIESLREEIKALKDERSQLHHQLEEGQVTSDRL 1057
Cdd:pfam02463 932 kyeeEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEEL----GKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKL 1007
|
330
....*....|..
gi 568961004 1058 KGEVARLSKQAK 1069
Cdd:pfam02463 1008 IRAIIEETCQRL 1019
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
983-1084 |
3.00e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.88 E-value: 3.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 983 SEEL--KEK-MDKLTRQLfddvqKEEQQRLVLEKgfeLKTQAYEKQIESLREEIKALKDERSQLHHQLEEGQVTSDRLKG 1059
Cdd:PRK09039 45 SREIsgKDSaLDRLNSQI-----AELADLLSLER---QGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEG 116
|
90 100
....*....|....*....|....*....
gi 568961004 1060 EVARLSKQ---AKTIS-EFEKEIELLQAQ 1084
Cdd:PRK09039 117 RAGELAQEldsEKQVSaRALAQVELLNQQ 145
|
|
| ERM_helical |
pfam20492 |
Ezrin/radixin/moesin, alpha-helical domain; The ERM family consists of three closely-related ... |
924-1053 |
3.15e-03 |
|
Ezrin/radixin/moesin, alpha-helical domain; The ERM family consists of three closely-related proteins, ezrin, radixin and moesin. Ezrin was first identified as a constituent of microvilli, radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions, and moesin as a heparin binding protein. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain, an extended alpha-helical domain and a charged C-terminal domain (pfam00769). Ezrin, radixin and merlin also contain a polyproline linker region between the helical and C-terminal domains. The N-terminal domain is highly conserved and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily, designated the FERM domain. ERM proteins crosslink actin filaments with plasma membranes. They co-localize with CD44 at actin filament plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains. This is the alpha-helical domain, which is involved in intramolecular masking of protein-protein interaction sites, regulating the activity of this proteins.
Pssm-ID: 466641 [Multi-domain] Cd Length: 120 Bit Score: 39.13 E-value: 3.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 924 EKVQKLEAELEKAATHRHSYEEKGRRYrdtvEERLSKLQKHNAELELQRERAEQMlQEKSEELKEKmdkltrqlfddvQK 1003
Cdd:pfam20492 13 ERLKQYEEETKKAQEELEESEETAEEL----EEERRQAEEEAERLEQKRQEAEEE-KERLEESAEM------------EA 75
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 568961004 1004 EEQQRLvlekgfELKTQAYEKQIESLREEIKALKDERSQLHHQLEEGQVT 1053
Cdd:pfam20492 76 EEKEQL------EAELAEAQEEIARLEEEVERKEEEARRLQEELEEAREE 119
|
|
| IQ |
pfam00612 |
IQ calmodulin-binding motif; Calmodulin-binding motif. |
831-851 |
3.19e-03 |
|
IQ calmodulin-binding motif; Calmodulin-binding motif.
Pssm-ID: 459869 Cd Length: 21 Bit Score: 36.53 E-value: 3.19e-03
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
955-1348 |
3.49e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.47 E-value: 3.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 955 EERLSKLQKHNAELELQRERAEQMLQEKSEE---LKEKMDKLTrQLFDDVQkEEQQRLVLEKG-FELKTQAYEKQIESLR 1030
Cdd:pfam01576 11 EEELQKVKERQQKAESELKELEKKHQQLCEEknaLQEQLQAET-ELCAEAE-EMRARLAARKQeLEEILHELESRLEEEE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1031 EEIKALKDERSQLHH-------QLEEGQVTSDRLKGEvaRLSKQAKtISEFEKEIELLQAQKIDVEKhvqsQKREMRERM 1103
Cdd:pfam01576 89 ERSQQLQNEKKKMQQhiqdleeQLDEEEAARQKLQLE--KVTTEAK-IKKLEEDILLLEDQNSKLSK----ERKLLEERI 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1104 SEVTKQLLESYDIEDVRSRLS------VEDLE-HLNEDGELWFAYEGLKKATRVLESHFQSQKDCYEKEIEGLNFKVVHL 1176
Cdd:pfam01576 162 SEFTSNLAEEEEKAKSLSKLKnkheamISDLEeRLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKK 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1177 SQEINHLQKLFREETDINESIRHEVTRLTSENM-MIPDF---KQQISELERQKQDLEsrlkEQAEKIEGKLEEPFSHLNR 1252
Cdd:pfam01576 242 EEELQAALARLEEETAQKNNALKKIRELEAQISeLQEDLeseRAARNKAEKQRRDLG----EELEALKTELEDTLDTTAA 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1253 IREEERMQGRAPHPFLRAVEAQSEMHP----EGKERLVGAIHEPHEAIKFPKKQPEAEEEVESILQQEASRLSLEKRDLE 1328
Cdd:pfam01576 318 QQELRSKREQEVTELKKALEEETRSHEaqlqEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQ 397
|
410 420
....*....|....*....|
gi 568961004 1329 EELDMKDRMIRRLQDQVKTL 1348
Cdd:pfam01576 398 QAKQDSEHKRKKLEGQLQEL 417
|
|
| IQ |
smart00015 |
Calmodulin-binding motif; Short calmodulin-binding motif containing conserved Ile and Gln ... |
830-851 |
3.52e-03 |
|
Calmodulin-binding motif; Short calmodulin-binding motif containing conserved Ile and Gln residues.
Pssm-ID: 197470 [Multi-domain] Cd Length: 23 Bit Score: 36.53 E-value: 3.52e-03
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
921-1318 |
3.71e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.20 E-value: 3.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 921 GDLEKVQKLEAELEKAATHRHSYEEKGRRYRDTVEERLsKLQKHNAElELQRERAE-------------------QMLQE 981
Cdd:PRK01156 360 GYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEIL-KIQEIDPD-AIKKELNEinvklqdisskvsslnqriRALRE 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 982 KSEELKEKMDKLTRQ-----LFDDVQKEEQQRLVleKGFELKTQAYEKQIESLREEIKALKDERSQL---HHQLEEGQVt 1053
Cdd:PRK01156 438 NLDELSRNMEMLNGQsvcpvCGTTLGEEKSNHII--NHYNEKKSRLEEKIREIEIEVKDIDEKIVDLkkrKEYLESEEI- 514
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1054 sDRLKGEVARLSKQAKTISEFEKEIELLqAQKIDVEKHVQSQKREM-----RERMSEVTKQL--LESYDIEDVRSRlSVE 1126
Cdd:PRK01156 515 -NKSINEYNKIESARADLEDIKIKINEL-KDKHDKYEEIKNRYKSLkledlDSKRTSWLNALavISLIDIETNRSR-SNE 591
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1127 DLEHLNEdgelwfayegLKKATRVLESHFQSQKDCYEKEIEGLNFKVVHLSQEINHLQKLFREETDINESIRHEVTRLTS 1206
Cdd:PRK01156 592 IKKQLND----------LESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAE 661
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1207 ENMMIPDFKqqisELERQKQDLESRLKeqaeKIEGKLEEPFSHLNRIreeermqgRAPHPFLRAVEAQSEMHPEGKERLV 1286
Cdd:PRK01156 662 IDSIIPDLK----EITSRINDIEDNLK----KSRKALDDAKANRARL--------ESTIEILRTRINELSDRINDINETL 725
|
410 420 430
....*....|....*....|....*....|....
gi 568961004 1287 GAIHEPHEAIKFPKKQPEA--EEEVESILQQEAS 1318
Cdd:PRK01156 726 ESMKKIKKAIGDLKRLREAfdKSGVPAMIRKSAS 759
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
890-1349 |
4.57e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.08 E-value: 4.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 890 RVQRLQKKLEDQNRENHGLVEKLTSLAalrvgdlekvQKLEAELE---KAATHRHSYEEKGRRYRDTV---EERLSKLQK 963
Cdd:pfam01576 20 RQQKAESELKELEKKHQQLCEEKNALQ----------EQLQAETElcaEAEEMRARLAARKQELEEILhelESRLEEEEE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 964 HNAELELQRERAEQMLQEKSEELKEKMDklTRqlfddvQKEEQQRLVLE---KGFELKTQAYEKQIESLREEIKALKDER 1040
Cdd:pfam01576 90 RSQQLQNEKKKMQQHIQDLEEQLDEEEA--AR------QKLQLEKVTTEakiKKLEEDILLLEDQNSKLSKERKLLEERI 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1041 SQLHHQLEEGQ-----VTSDRLKGEVA------RLSKQAKTISEFEKEIELLQAQKIDvekhVQSQKREMRERMSEVTKQ 1109
Cdd:pfam01576 162 SEFTSNLAEEEekaksLSKLKNKHEAMisdleeRLKKEEKGRQELEKAKRKLEGESTD----LQEQIAELQAQIAELRAQ 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1110 LLESYD-IEDVRSRLSVEDLEHLNedgelwfayegLKKATRVLESH-------FQSQKDCYEK----------EIEGLNF 1171
Cdd:pfam01576 238 LAKKEEeLQAALARLEEETAQKNN-----------ALKKIRELEAQiselqedLESERAARNKaekqrrdlgeELEALKT 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1172 KV--------------VHLSQEINHLQKLFREETDINES------IRHEvTRLTSENMMIPDFKQQISELERQKQDLESR 1231
Cdd:pfam01576 307 ELedtldttaaqqelrSKREQEVTELKKALEEETRSHEAqlqemrQKHT-QALEELTEQLEQAKRNKANLEKAKQALESE 385
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1232 LKE-QAE----------------KIEGKLEEPFShlnRIREEERMQGRAPHpflRAVEAQSEMhpegkERLVGAIHEPH- 1293
Cdd:pfam01576 386 NAElQAElrtlqqakqdsehkrkKLEGQLQELQA---RLSESERQRAELAE---KLSKLQSEL-----ESVSSLLNEAEg 454
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568961004 1294 EAIKFPKKQPEAE---EEVESILQQEA-SRLSL---------EKRDLEEELDMKDRMIRRLQDQVKTLT 1349
Cdd:pfam01576 455 KNIKLSKDVSSLEsqlQDTQELLQEETrQKLNLstrlrqledERNSLQEQLEEEEEAKRNVERQLSTLQ 523
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
896-1202 |
5.11e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.87 E-value: 5.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 896 KKLEDQNRENHGLVEKLTSLAAlrvgDLEKVQKL--------------------EAELEKAATHR-------HSYEEKGR 948
Cdd:PRK04863 786 KRIEQLRAEREELAERYATLSF----DVQKLQRLhqafsrfigshlavafeadpEAELRQLNRRRveleralADHESQEQ 861
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 949 RYR---DTVEERLSKLQKHNAELELqreRAEQMLQEKSEELKEKMDKLtrqlfddvqkEEQQRLVLEKGFELktQAYEKQ 1025
Cdd:PRK04863 862 QQRsqlEQAKEGLSALNRLLPRLNL---LADETLADRVEEIREQLDEA----------EEAKRFVQQHGNAL--AQLEPI 926
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1026 IESLR---EEIKALKDERSQLHHQLEEGQVTSDRLKGEVARL-----SKQAKTISEFEKEIELLQAQkidvEKHVQSQKR 1097
Cdd:PRK04863 927 VSVLQsdpEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRahfsyEDAAEMLAKNSDLNEKLRQR----LEQAEQERT 1002
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1098 EMRERMSEVTKQLLEsYD--IEDVRSRLSV-EDL--EHLNEDGELWFAY-EGLKKATRVLE-------SHFQSQKDCYEK 1164
Cdd:PRK04863 1003 RAREQLRQAQAQLAQ-YNqvLASLKSSYDAkRQMlqELKQELQDLGVPAdSGAEERARARRdelharlSANRSRRNQLEK 1081
|
330 340 350
....*....|....*....|....*....|....*...
gi 568961004 1165 EIeglnfkvVHLSQEINHLQKLFREETDINESIRHEVT 1202
Cdd:PRK04863 1082 QL-------TFCEAEMDNLTKKLRKLERDYHEMREQVV 1112
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
884-1058 |
6.34e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 41.35 E-value: 6.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 884 NIQLTYRVQRLQKKL---EDQNRENHGLVEKLtsLAALRVGDLEKVQKLE--AELEKAATHRHSYEEKGRRYRDTVEERL 958
Cdd:pfam10174 553 NPEINDRIRLLEQEVaryKEESGKAQAEVERL--LGILREVENEKNDKDKkiAELESLTLRQMKEQNKKVANIKHGQQEM 630
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 959 SKlqKHNAELELQRERAEQM----LQEKSEELKEKMDKlTRQLFDDVQKE---EQQRLV----------------LEKGF 1015
Cdd:pfam10174 631 KK--KGAQLLEEARRREDNLadnsQQLQLEELMGALEK-TRQELDATKARlssTQQSLAekdghltnlraerrkqLEEIL 707
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1016 ELKTQAYEKQI-----------------ESLREEIKALKDERSQLHHQLEegQVTSDRLK 1058
Cdd:pfam10174 708 EMKQEALLAAIsekdaniallelssskkKKTQEEVMALKREKDRLVHQLK--QQTQNRMK 765
|
|
| UPF0242 |
pfam06785 |
Uncharacterized protein family (UPF0242) N-terminus; This region includes an N-terminal ... |
904-1036 |
6.43e-03 |
|
Uncharacterized protein family (UPF0242) N-terminus; This region includes an N-terminal transmembrane region and a C-terminal coiled-coil.
Pssm-ID: 429117 [Multi-domain] Cd Length: 194 Bit Score: 39.80 E-value: 6.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 904 ENHGLVEKLTSLAALrvgDLEKVQKLEAELEKaathRHSYEEKGRRYRDTVEERLSKLQKHNAELELQRERAEQMLQEKS 983
Cdd:pfam06785 66 EKSFLEEKEAKLTEL---DAEGFKILEETLEE----LQSEEERLEEELSQKEEELRRLTEENQQLQIQLQQISQDFAEFR 138
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 568961004 984 EELKEKMDKLTRQLFDDVQKEEQQRLVLEKGFElKTQAYEKQIESLREEIKAL 1036
Cdd:pfam06785 139 LESEEQLAEKQLLINEYQQTIEEQRSVLEKRQD-QIENLESKVRDLNYEIKTL 190
|
|
| CHASE3 |
COG5278 |
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms]; |
780-1129 |
7.42e-03 |
|
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms];
Pssm-ID: 444089 [Multi-domain] Cd Length: 530 Bit Score: 41.05 E-value: 7.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 780 RQAALTIQRYFRGQQT---VRKAITATALKEAWAAIILQKYCRGYLVRNLYQLIRVATITIQAHTRGFLARRRYRKLLQE 856
Cdd:COG5278 135 LEAALALVRSGEGKALmdeIRARLLLLALALAALLLAAAALLLLLLALAALLALAELLLLALARALAALLLLLLLEAELA 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 857 HKAVILQKYARAWLARRRFQNIRRFVLNIQLTYRVQRLQKKLEDQNRENHGLVEKLTSLAALRVGDLEKVQKLEAELEKA 936
Cdd:COG5278 215 AAAALLAAAAALAALAALELLAALALALALLLAALLLALLAALALAALLAAALLALAALLLALAAAAALAAAAALELAAA 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 937 ATHRHSYEEKGRRYRDTVEERLSKLQKHNAELELQRERAEQMLQEKSEELKEKMDKLTRQLFDDVQKEEQQRLVLEKGFE 1016
Cdd:COG5278 295 EALALAELELELLLAAAAAAAAAAAAAAAALAALLALALATALAAAAAALALLAALLAEAAAAAAEEAEAAAEAAAAALA 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1017 LKTQAYEKQIESLREEIKALKDERSQLHHQLEEGQVTSDRLKGEVARLSKQAKTISEFEKEIELLQAQKIDVEKHVQSQK 1096
Cdd:COG5278 375 GLAEVEAEGAAEAVELEVLAIAAAAAAAAAEAAAAAAAAAAASAAEALELAEALAEALALAEEEALALAAASSELAEAGA 454
|
330 340 350
....*....|....*....|....*....|...
gi 568961004 1097 REMRERMSEVTKQLLESYDIEDVRSRLSVEDLE 1129
Cdd:COG5278 455 ALALAAAEALAEELAAVAALAALAAAAAALAEA 487
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
886-1206 |
7.84e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 41.31 E-value: 7.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 886 QLTYRVQRLQKKLEDQNRENhglvekltSLAALRVGDLE-KVQKLEAELEKAathrhsyeEKGRryrdtvEERLSKLQKH 964
Cdd:pfam01576 746 QLVKQVRELEAELEDERKQR--------AQAVAAKKKLElDLKELEAQIDAA--------NKGR------EEAVKQLKKL 803
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 965 NAEL-ELQRE-------RAEQMLQEKSEELKEK-MDKLTRQLFDDVQKEEQQRLVLEK-----GFELKTQAYEKQieSLR 1030
Cdd:pfam01576 804 QAQMkDLQREleearasRDEILAQSKESEKKLKnLEAELLQLQEDLAASERARRQAQQerdelADEIASGASGKS--ALQ 881
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1031 EEIKALKDERSQLHHQLEEGQVTSDRLKGEVARLSKQAKTISEfEKEIELLQAQKID-VEKHVQSQKREMRERMSEVTKQ 1109
Cdd:pfam01576 882 DEKRRLEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQLTT-ELAAERSTSQKSEsARQQLERQNKELKAKLQEMEGT 960
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1110 L----------LESyDIEDVRSRLSVEDLEHLNEDGELWFAYEGLKKATRVLESHfQSQKDCYEKEIEGLNFKVVHL--- 1176
Cdd:pfam01576 961 VkskfkssiaaLEA-KIAQLEEQLEQESRERQAANKLVRRTEKKLKEVLLQVEDE-RRHADQYKDQAEKGNSRMKQLkrq 1038
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 568961004 1177 -------SQEIN----HLQKLFREETDINESIRHEVTRLTS 1206
Cdd:pfam01576 1039 leeaeeeASRANaarrKLQRELDDATESNESMNREVSTLKS 1079
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1097-1240 |
7.89e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.00 E-value: 7.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1097 REMRERMSEVTKQLLESYDIEDVRSR----LSVED-LEHLNEDGElwfayEGLKKATRVLESHFQSQKDCYEKEIEGLNF 1171
Cdd:COG2433 346 DAYKNKFERVEKKVPPDVDRDEVKARvirgLSIEEaLEELIEKEL-----PEEEPEAEREKEHEERELTEEEEEIRRLEE 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1172 KVVHLSQEINHLQ-----------------KLFREETDINESIRHEVTRLTSEnmmipdfkqqISELERQKQDLESRLKE 1234
Cdd:COG2433 421 QVERLEAEVEELEaeleekderierlerelSEARSEERREIRKDREISRLDRE----------IERLERELEEERERIEE 490
|
....*.
gi 568961004 1235 QAEKIE 1240
Cdd:COG2433 491 LKRKLE 496
|
|
| Nuf2_DHR10-like |
pfam18595 |
Nuf2, DHR10-like domain; This domain is found at the C-terminal region of Nuf2 proteins. This ... |
926-995 |
8.50e-03 |
|
Nuf2, DHR10-like domain; This domain is found at the C-terminal region of Nuf2 proteins. This domain was identified as MazG related domain also designated as Designed helical repeat protein 10 (DHR10) that actually adopts a coiled-coil structure. Nuf2 is part of the Ndc80 complex, which binds to the spindle and is required for chromosome segregation and spindle checkpoint activity.
Pssm-ID: 465814 [Multi-domain] Cd Length: 117 Bit Score: 37.95 E-value: 8.50e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568961004 926 VQKLEAELEKAATHRHSYEEKGRRYRDTV--EERLSK-LQKHNAELElqreRAEQMLQEKSEELKEKMDKLTR 995
Cdd:pfam18595 49 LAKLEEAKKKLKELRDALEEKEIELRELErrEERLQRqLENAQEKLE----RLREQAEEKREAAQARLEELRE 117
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
895-1357 |
8.67e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.98 E-value: 8.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 895 QKKLEDQNRE------NHGLVE-KLTSLAALRVGDL-EKVQKLEAELEKaathrhSYEEKGRRYrdTVEErlSKLQKHNA 966
Cdd:pfam12128 353 QSELENLEERlkaltgKHQDVTaKYNRRRSKIKEQNnRDIAGIKDKLAK------IREARDRQL--AVAE--DDLQALES 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 967 ELELQRERAEQMLQEKSEELKEKMDKLTRQLfDDVQKEEQQRLVLEKGFELKTQAYEKQiESLREEIKALKDERSQLHHQ 1046
Cdd:pfam12128 423 ELREQLEAGKLEFNEEEYRLKSRLGELKLRL-NQATATPELLLQLENFDERIERAREEQ-EAANAEVERLQSELRQARKR 500
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1047 LEEGqvtSDRLKGEVARLSKQAKTISEFEkeiELLQAQKIDVEKHVQSQKREMRERMSEV-TKQLLESYDIEDVRSRLSV 1125
Cdd:pfam12128 501 RDQA---SEALRQASRRLEERQSALDELE---LQLFPQAGTLLHFLRKEAPDWEQSIGKViSPELLHRTDLDPEVWDGSV 574
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1126 EDLEHLN---------EDGELWFAYEGLKKATRVLESHFQSQKDCY---EKEIEGLNFKVVHLSQEIN-----------H 1182
Cdd:pfam12128 575 GGELNLYgvkldlkriDVPEWAASEEELRERLDKAEEALQSAREKQaaaEEQLVQANGELEKASREETfartalknarlD 654
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1183 LQKLFRE--------ETDINESIRHEVTRLTS----ENMMIPDFKQQISELERQKQDLESRLKEQAEKIEGKLEEPFSHL 1250
Cdd:pfam12128 655 LRRLFDEkqsekdkkNKALAERKDSANERLNSleaqLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALL 734
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1251 NRIREEERMQGRAphpflRAVEAQSEMH---------PEGKERLVGAIHEPHEAIKFPKKQPEAEEEVESILQ----QEA 1317
Cdd:pfam12128 735 KAAIAARRSGAKA-----ELKALETWYKrdlaslgvdPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQetwlQRR 809
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 568961004 1318 SRLSLEKRDLEEELDMKDRMIRRLQDQVKTLTKTTEKANH 1357
Cdd:pfam12128 810 PRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERK 849
|
|
| DUF4659 |
pfam15558 |
Domain of unknown function (DUF4659); This family of proteins is found in eukaryotes. Proteins ... |
924-1240 |
9.10e-03 |
|
Domain of unknown function (DUF4659); This family of proteins is found in eukaryotes. Proteins in this family are typically between 427 and 674 amino acids in length. There are two completely conserved residues (D and I) that may be functionally important.
Pssm-ID: 464768 [Multi-domain] Cd Length: 374 Bit Score: 40.41 E-value: 9.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 924 EKVQKLEAELEKaathRHSYEEKGRRYRDTVEERLSKLQKHNAELELQRERAEQMLQEKSEELKEKMDKLTRQLFDDVQK 1003
Cdd:pfam15558 41 DQKRQETLERER----RLLLQQSQEQWQAEKEQRKARLGREERRRADRREKQVIEKESRWREQAEDQENQRQEKLERARQ 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1004 EEQQRlvlekgfelKTQayekQIESLREEIKALKDERSQLHHQLEEgqvtsdrlKGEVARLSKQAKtISEFEKEIELLQA 1083
Cdd:pfam15558 117 EAEQR---------KQC----QEQRLKEKEEELQALREQNSLQLQE--------RLEEACHKRQLK-EREEQKKVQENNL 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1084 QKIdVEKHVQSQKREMRERMSEVTKQL-LESydiedvRSRLSVEDLEHLNEDgelwfAYEGLKKATRVLESHFQSQKDCY 1162
Cdd:pfam15558 175 SEL-LNHQARKVLVDCQAKAEELLRRLsLEQ------SLQRSQENYEQLVEE-----RHRELREKAQKEEEQFQRAKWRA 242
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568961004 1163 EKEIEGLNfkvvhlsQEINHLQKLFREETDINESIRHEVTRltsenmmipDFKQQISELERQKQDLESRLKEQAEKIE 1240
Cdd:pfam15558 243 EEKEEERQ-------EHKEALAELADRKIQQARQVAHKTVQ---------DKAQRARELNLEREKNHHILKLKVEKEE 304
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1195-1309 |
9.11e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.97 E-value: 9.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1195 ESIRHEVTRLTSEnmmipdFKQQISELERQKQDLESRLKEQAEKI--EGKlEEPFSHLNRIREEERMQGRAphpfLRAVE 1272
Cdd:PRK00409 540 EALLKEAEKLKEE------LEEKKEKLQEEEDKLLEEAEKEAQQAikEAK-KEADEIIKELRQLQKGGYAS----VKAHE 608
|
90 100 110
....*....|....*....|....*....|....*..
gi 568961004 1273 AQsEMHpegkeRLVGAIHEPHEAIKFPKKQPEAEEEV 1309
Cdd:PRK00409 609 LI-EAR-----KRLNKANEKKEKKKKKQKEKQEELKV 639
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
1023-1371 |
9.35e-03 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 40.83 E-value: 9.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1023 EKQIESLREEIKALKDERSQLHHQLeegqvtsDRLKGEVARLSKQAKTISEFEKEIELLQAQKIDVEkhvqSQKREMRER 1102
Cdd:pfam05622 20 DQQVSLLQEEKNSLQQENKKLQERL-------DQLESGDDSGTPGGKKYLLLQKQLEQLQEENFRLE----TARDDYRIK 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1103 MSEVTKQLLE-SYDIEDVRSrlSVEDLEHL-NEDGELWFAYEGLKKATRVLEShfqsqkdcYEKEIEGLN--FKVVHLSQ 1178
Cdd:pfam05622 89 CEELEKEVLElQHRNEELTS--LAEEAQALkDEMDILRESSDKVKKLEATVET--------YKKKLEDLGdlRRQVKLLE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1179 EIN--HLQKlfreetdiNESIRHEVTRLTSENMMIPDFKQQISELERqKQDLESRLKEQAEKIEGKLEEPFSHLNRIRE- 1255
Cdd:pfam05622 159 ERNaeYMQR--------TLQLEEELKKANALRGQLETYKRQVQELHG-KLSEESKKADKLEFEYKKLEEKLEALQKEKEr 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961004 1256 --EERMQGRAPHPFLRAVEAQS----------------------EMHP-EGKERLVGAIHEpHEAIKFpkKQPEAEEEVE 1310
Cdd:pfam05622 230 liIERDTLRETNEELRCAQLQQaelsqadallspssdpgdnlaaEIMPaEIREKLIRLQHE-NKMLRL--GQEGSYRERL 306
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568961004 1311 SILQQEASRLSLEKRDLEEELDMKDRMIRRLQDQVKTLTKT-TEKANHVHLPSGSREYLGML 1371
Cdd:pfam05622 307 TELQQLLEDANRRKNELETQNRLANQRILELQQQVEELQKAlQEQGSKAEDSSLLKQKLEEH 368
|
|
| |
