|
Name |
Accession |
Description |
Interval |
E-value |
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
108-1188 |
0e+00 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 1151.84 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 108 TRQEEEMQAKEEEMQKIKERQQKAETELKELEQKHTQLAEEKTLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEM 187
Cdd:pfam01576 1 TRQEEEMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEILHEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 188 EARLEEEEDRGQQLQAERKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNSKLSKERKLLEER 267
Cdd:pfam01576 81 ESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEER 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 268 VSDLTTNLAEEEEKAKNLTKLKSKHESMISELEVRLKKEEKSRQELEKLKRKLEGDASDFHEQIADLQAQIAELKMQLAK 347
Cdd:pfam01576 161 ISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 348 KEEELQAALARLDEEIAQKNNALKKIRELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTELEDTLDSTATQQE 427
Cdd:pfam01576 241 KEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 428 LRAKREQEVTVLKKALDEETRSHEAQVQEMRQKHTQAVEELTEQLEQFKRAKANLDKSKQTLEKENADLAGELRVLGQAK 507
Cdd:pfam01576 321 LRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAK 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 508 QEVEHKKKKLEVQLQDLQSKCSDGERARAELSDKVHKLQNEVESVTGMLNEAEGKAIKLAKDVASLGSQLQDTQELLQEE 587
Cdd:pfam01576 401 QDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEE 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 588 TRQKLNVSTKLRQLEDERNSLQDQLDEEMEAKQNLERHVSTLNIQLSDSKKKLQDFASTIEVMEEGKKRLQKEMEGLSQQ 667
Cdd:pfam01576 481 TRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQ 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 668 YEEKAAAYDKLEKTKNRLQQELDDLVVDLDNQRQLVSNLEKKQKKFDQLLAEEKNISSKYADERDRAEAEAREKETKALS 747
Cdd:pfam01576 561 LEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETRALS 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 748 LARALEEALEAKEELERTNKMLKAEMEDLVSSKDDVGKNVHELEKSKRALETQMEEMKTQLEELEDELQATEDAKLRLEV 827
Cdd:pfam01576 641 LARALEEALEAKEELERTNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEV 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 828 NMQALKGQFERDLQARDEQNEEKRRQLQRQLHEYETELEDERKQRALAAAAKKKLEGDLKDLELQADSAIKGREEAIKQL 907
Cdd:pfam01576 721 NMQALKAQFERDLQARDEQGEEKRRQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQIDAANKGREEAVKQL 800
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 908 RKLQAQMKDFQRELDDARASRDEIFATSKENEKKAKSLEADLMQLQEDLAAAERARKQADLEKEELAEELASSLSGRNTL 987
Cdd:pfam01576 801 KKLQAQMKDLQRELEEARASRDEILAQSKESEKKLKNLEAELLQLQEDLAASERARRQAQQERDELADEIASGASGKSAL 880
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 988 QDEKRRLEARIAQLEEELEEEQGNMEAMSDRVRKATLQAEQLSNELATERSTAQKNESARQQLERQNKELRSKLQEVEGA 1067
Cdd:pfam01576 881 QDEKRRLEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQLTTELAAERSTSQKSESARQQLERQNKELKAKLQEMEGT 960
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1068 VKAKLKSTVAALEAKIAQLEEQVEQEAREKQAATKSLKQKDKKLKEVLLQVEDERKMAEQYKEQAEKGNTKVKQLKRQLE 1147
Cdd:pfam01576 961 VKSKFKSSIAALEAKIAQLEEQLEQESRERQAANKLVRRTEKKLKEVLLQVEDERRHADQYKDQAEKGNSRMKQLKRQLE 1040
|
1050 1060 1070 1080
....*....|....*....|....*....|....*....|.
gi 568994733 1148 EAEEESQRINANRRKLQRELDEATESNEAMGREVNALKSKL 1188
Cdd:pfam01576 1041 EAEEEASRANAARRKLQRELDDATESNESMNREVSTLKSKL 1081
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
364-1173 |
6.15e-23 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 106.29 E-value: 6.15e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 364 AQKNNALKKIRELEGHISDLQEDLDSERAARNKAEKQKRdLGEELEALKTELEDTLDSTATQQELRAKREQEvtvlkkal 443
Cdd:TIGR02168 172 ERRKETERKLERTRENLDRLEDILNELERQLKSLERQAE-KAERYKELKAELRELELALLVLRLEELREELE-------- 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 444 deETRSHEAQVQEMRQKHTQAVEELTEQLEQFKRAKANLDKSKQTLEKENADLAGELRVLGQAKQEVEHKKKKLEVQLQD 523
Cdd:TIGR02168 243 --ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 524 LQSKCSDGERARAELSDKVHKLQNEVESVTGMLNEAEGKAIKLAKDVASLGSQLQDTQELLQEETRQKLNVSTKLRQLED 603
Cdd:TIGR02168 321 LEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNN 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 604 ERNSLQDQLDEEMEAKQNLERHVSTLNIQLSDSKKK-----LQDFASTIEVMEEGKKRLQKEMEGLSQQYEEKAAAYDKL 678
Cdd:TIGR02168 401 EIERLEARLERLEDRRERLQQEIEELLKKLEEAELKelqaeLEELEEELEELQEELERLEEALEELREELEEAEQALDAA 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 679 EKTKNRLQQELDDLVVDLDNQRQL---VSNLEKKQKKF---DQLLAEEKNISSKY-----ADERDRAEAEAREKETKAL- 746
Cdd:TIGR02168 481 ERELAQLQARLDSLERLQENLEGFsegVKALLKNQSGLsgiLGVLSELISVDEGYeaaieAALGGRLQAVVVENLNAAKk 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 747 ---SLARALEEALEAKEELERTNKMLKAEMEDLVSSKDDVGKNVHELEKSKRALETQMEEMKTQLEELEDELQATEDAK- 822
Cdd:TIGR02168 561 aiaFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKk 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 823 LRLEVNMQALKG--------------QFERDLQARD---EQNEEKRRQLQRQLHEYETELEDERKQRALAAAAKKKLEGD 885
Cdd:TIGR02168 641 LRPGYRIVTLDGdlvrpggvitggsaKTNSSILERRreiEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKE 720
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 886 LKDLELQADSAIKGREEAIKQLRKLQAQMKDFQRELDDARASRDEIFATSKENEKKAKSLEADLMQLQEDLAAAERARKQ 965
Cdd:TIGR02168 721 LEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA 800
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 966 ADLEKEELAEELASSLSGRNTLQDEKRRLEARIAQLEEELEEEQGNMEAMSDRVRKATLQAEQLSNELATERSTAQKNES 1045
Cdd:TIGR02168 801 LREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLN 880
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1046 ARQQLERQNKELRSKLQEVEGAVKaKLKSTVAALEAKIAQLEEQVEQEAREKQAATKSLKQKDKKLKEVL-LQVEDERKM 1124
Cdd:TIGR02168 881 ERASLEEALALLRSELEELSEELR-ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYsLTLEEAEAL 959
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*.
gi 568994733 1125 AEQYKEQAEKGNTKVKQLKRQLEE-------AEEESQRINANRRKLQRELDEATES 1173
Cdd:TIGR02168 960 ENKIEDDEEEARRRLKRLENKIKElgpvnlaAIEEYEELKERYDFLTAQKEDLTEA 1015
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
2-451 |
7.54e-21 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 99.77 E-value: 7.54e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 2 DGKQACILMIKALELDPNLYRIGQSKIFFRTGVLAHLEEERDLKITDVIMAFQAMCRGYLARKAFTKRQQQLTAMKVIQR 81
Cdd:COG5022 700 DTKNAVKSILEELVIDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQH 779
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 82 NCAAYLKLRNWQWWRLFTKVKPLLQVTrqeeemqakeeemqKIKERQQKAETELKELEQKhtqlAEEKTLLQEQLQAETE 161
Cdd:COG5022 780 GFRLRRLVDYELKWRLFIKLQPLLSLL--------------GSRKEYRSYLACIIKLQKT----IKREKKLRETEEVEFS 841
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 162 LYAEAEEMRVRLAAKKQELEEILHEMEARLeeeedrgQQLQAERKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIK 241
Cdd:COG5022 842 LKAEVLIQKFGRSLKAKKRFSLLKKETIYL-------QSAQRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKS 914
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 242 KLEDDILVMDDQNSKLSKERKLLEER--VSDLTTNLAEEEEKAKNLTKLKSKHESmISELEVRLKKEEKSRQELEKLKRK 319
Cdd:COG5022 915 LSSDLIENLEFKTELIARLKKLLNNIdlEEGPSIEYVKLPELNKLHEVESKLKET-SEEYEDLLKKSTILVREGNKANSE 993
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 320 LEG---DASDFHEQIADLQAQIAELKmQLAKKEEELQAALARLDEEIAQKNNaLKKIRELEghisdlqedldseraarNK 396
Cdd:COG5022 994 LKNfkkELAELSKQYGALQESTKQLK-ELPVEVAELQSASKIISSESTELSI-LKPLQKLK-----------------GL 1054
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 568994733 397 AEKQKRDLGEELEALKTELEDTLDSTATQQELRAKREQEVTVLKKALDEETRSHE 451
Cdd:COG5022 1055 LLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLV 1109
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
89-937 |
1.17e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 95.51 E-value: 1.17e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 89 LRNWQWWRLftkvkpLLQVTRQEEEMQAKEEEMQKIKERQQKAETELKELEQKHTQLAEEKTLLQEQLQAETELYAEaee 168
Cdd:TIGR02168 222 LRELELALL------VLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYA--- 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 169 mrvrLAAKKQELEEilhemearleeeedRGQQLQAERKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDIL 248
Cdd:TIGR02168 293 ----LANEISRLEQ--------------QKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 249 VMDDQNSKLSKERKLLEERVSDLTTNLAEEEEKAKNLTKLKSKHESMISELEVRLKKEEKSRQELEKLKRKLEGDASDfh 328
Cdd:TIGR02168 355 SLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE-- 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 329 EQIADLQAQIAELKMQLAKKEEELQAALARLDEEIAQKNNALKKIRELEGHISDLQEDLDSERAARNKAEKQKRDLGEEL 408
Cdd:TIGR02168 433 AELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALL 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 409 EAlKTELEDTLDSTATQQELRAKREQEV-TVLKKALDeetrsheAQVQEMRQKHTQAVEELtEQLEQFKRAKANLDKSK- 486
Cdd:TIGR02168 513 KN-QSGLSGILGVLSELISVDEGYEAAIeAALGGRLQ-------AVVVENLNAAKKAIAFL-KQNELGRVTFLPLDSIKg 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 487 QTLEKENADLAGELRVLGQAKQEVEHKKKKLEVQLQDL--QSKCSDGERARAELSDKVHKLQNEVE----------SVTG 554
Cdd:TIGR02168 584 TEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlgGVLVVDDLDNALELAKKLRPGYRIVTldgdlvrpggVITG 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 555 MLNEAEGKAIKLAKDVASLGSQLQDTQELLQEetrqklnVSTKLRQLEDERNSLQDQLDEEMEAKQNLERHVSTLNIQLS 634
Cdd:TIGR02168 664 GSAKTNSSILERRREIEELEEKIEELEEKIAE-------LEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLA 736
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 635 DSKKKLQDFASTIEVMEEGKKRLQKEMEGLSQQYEEKAAAYDKLEKTKNRLQQELDDLVVDLDNQRqlvSNLEKKQKKFD 714
Cdd:TIGR02168 737 RLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR---EALDELRAELT 813
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 715 QLLAEEKNISSKYADERDRAEAEAREKETKALSLARALEEALEakeelertnkmLKAEMEDLVSSKDDVGKNVHELEKSK 794
Cdd:TIGR02168 814 LLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIES-----------LAAEIEELEELIEELESELEALLNER 882
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 795 RALETQMEEMKTQLEELEDELQATEDAKLRLEVNMQALKGQFErDLQARDEQNEEKRRQLQRQLHE-YETELEDERKQRA 873
Cdd:TIGR02168 883 ASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLA-QLELRLEGLEVRIDNLQERLSEeYSLTLEEAEALEN 961
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568994733 874 LAAAAKKKLEGDLKDLELQADS-------AIKGREEAIKQLRKLQAQMKDFQRELDDARASRDEIFATSKE 937
Cdd:TIGR02168 962 KIEDDEEEARRRLKRLENKIKElgpvnlaAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARE 1032
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
264-1120 |
9.88e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 92.81 E-value: 9.88e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 264 LEERVSDLTTNLAEEEEKAKNLTKLKSKHESMISELEVRLKKEEKSRQELEKLKRKLEGDASDFHEQIADLQAQIAELKM 343
Cdd:TIGR02168 237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLER 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 344 QLAKKEEELQAALARLDEEIAQKNNALKKIRELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTELedtldsta 423
Cdd:TIGR02168 317 QLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV-------- 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 424 tqqelrakreqevtvlkKALDEETRSHEAQVQEMRQKhtqaVEELTEQLEQFKRAKANLDKSKQTLEKEnaDLAGELRVL 503
Cdd:TIGR02168 389 -----------------AQLELQIASLNNEIERLEAR----LERLEDRRERLQQEIEELLKKLEEAELK--ELQAELEEL 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 504 GQAKQEVEHKKKKLEVQLQDLQSKCSDGERARAELSDKVHKLQNEVESVTGMLNEAEG--KAIKLAKDVASLGSQLQDT- 580
Cdd:TIGR02168 446 EEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGfsEGVKALLKNQSGLSGILGVl 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 581 QELLQEETRQKLNVSTKLRQledernSLQDQLdeeMEAKQNLERHVSTLniqlsdsKKKLQDFASTIEVMEEGKKRLQKE 660
Cdd:TIGR02168 526 SELISVDEGYEAAIEAALGG------RLQAVV---VENLNAAKKAIAFL-------KQNELGRVTFLPLDSIKGTEIQGN 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 661 MEGLSQQYEEKAAAYDKLEKTKNRLQQELDDLVVDLdnqrQLVSNLEKKQKKFDQLLAEEKNISSKYADERDRAEAEARE 740
Cdd:TIGR02168 590 DREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGV----LVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGS 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 741 KETKALSLARaleealeakeelertnkmlKAEMEDLVsskddvgKNVHELEKSKRALETQMEEMKTQLEELEDELQATED 820
Cdd:TIGR02168 666 AKTNSSILER-------------------RREIEELE-------EKIEELEEKIAELEKALAELRKELEELEEELEQLRK 719
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 821 AKLRLEVNMQALKGQFERdLQARDEQNEEKRRQLQRQLHEYETELEDERKQRALAAAAKKKLEGDLKDLELQADSAIKGR 900
Cdd:TIGR02168 720 ELEELSRQISALRKDLAR-LEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL 798
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 901 EEAIKQLRKLQAQMKDFQRELDDARASRDEIFATSKENEKKAKSLEADLMQLQEDLAAAERARKQADLEKEELAEELASs 980
Cdd:TIGR02168 799 KALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEA- 877
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 981 lsgrntLQDEKRRLEARIAQLEEELEEEQGNMEAMSDRVRKATLQAEQLSNELATERSTAQKNESARQQLERQNKELRSK 1060
Cdd:TIGR02168 878 ------LLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSL 951
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1061 LQEVEGAVKAKLKSTVAALEAKIAQLEEQVEQEAREKQAATKSLKQKDKKLKEVLLQVED 1120
Cdd:TIGR02168 952 TLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKED 1011
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
639-1190 |
1.01e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 89.23 E-value: 1.01e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 639 KLQDFASTIEVMEEGKKRLQKEMEGLSQQYEEKAAAYDKLEKTKNRLQQELDDLVVDLDNQRQLVSNLEKKQKKFDQLLA 718
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 719 EEKNISSKYADERDRAEAEAREKETKALSLARALEEALEAKEELERTNKMLKAEMEDLVSSKDDVGKNVHELEKSKRALE 798
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 799 TQMEEMKTQLEELEDELQATEDAKLRLEVNMQALKGQFERDLQARDEQNEEKRRQLQRQLHEYE--TELEDERKQRALAA 876
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEeeEALLELLAELLEEA 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 877 AAKKKLEGDLKDLELQADSAIKGREEAIKQLRKLQAQMKDFQRELDDARASRDEIFATSKENEKKAKSLEADLMQLQEDL 956
Cdd:COG1196 473 ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIV 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 957 AAAERARKQADLEKEELAEelasslsGRNTLQDEKRRLEARIAQLEEELEEEQGNMEAMSDRVRKATLQAEQLSNELATE 1036
Cdd:COG1196 553 VEDDEVAAAAIEYLKAAKA-------GRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGR 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1037 RSTAQKNESARQQLERQNKELRSKLQEVEGAVKAKLKSTVAALEAKIAQLEEQVEQEAREKQAATKSLKQKDKKLKEVLL 1116
Cdd:COG1196 626 TLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEE 705
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568994733 1117 QVEDERKMAEQyKEQAEKGNTKVKQLKRQLEEAEEESQRINANRRKLQRELDEATESNEAMGREVNALKSKLRR 1190
Cdd:COG1196 706 ERELAEAEEER-LEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
467-1190 |
1.10e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 89.35 E-value: 1.10e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 467 ELTEQLEQFKRAKANLDKSKQTLEKEnaDLAGELRVLGQAKQEVEHKKKKLEVQLQDLQSKCSDGERARAELSDKVHKLQ 546
Cdd:TIGR02168 210 EKAERYKELKAELRELELALLVLRLE--ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 547 NEVESVTGMLNEAEGKAIKLAKDVASLGSQLQDTQELLQEETRQKLNVSTKLRQLEDERNSLQDQLDEEMEAKQNLERHV 626
Cdd:TIGR02168 288 KELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 627 STLNIQLSDSKKKLQDFASTIEVMEEGKKRLQKEMEGLSQQYEEkaaaydkLEKTKNRLQQElddlvvdldnQRQLVSNL 706
Cdd:TIGR02168 368 EELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLER-------LEDRRERLQQE----------IEELLKKL 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 707 EKKQKKFDQLLAEEKNISSKYADERDRAEAEAREKETKALSLARALEEALEAKEELERTnkmLKAEMEDLVSSKDDVGKN 786
Cdd:TIGR02168 431 EEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQA---RLDSLERLQENLEGFSEG 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 787 VHELEKSKRALETQMEEMKTQLEELEDELQATEDAklrLEVNMQAL---KGQFERDLQARDEQNEEKRRQLQRQLHEYET 863
Cdd:TIGR02168 508 VKALLKNQSGLSGILGVLSELISVDEGYEAAIEAA---LGGRLQAVvveNLNAAKKAIAFLKQNELGRVTFLPLDSIKGT 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 864 ELEDERKQRALAAAAKKKLEGDLKDLELQADSAIKGR----------EEAIKQLRKLQAQMKDFQRELD----------- 922
Cdd:TIGR02168 585 EIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlggvlvvddlDNALELAKKLRPGYRIVTLDGDlvrpggvitgg 664
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 923 --DARASRDEIFATSKENEKKAKSLEADLMQLQEDLAAAERARKQADLEKEELAEELASSLSGRNTLQDEKRRLEARIAQ 1000
Cdd:TIGR02168 665 saKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ 744
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1001 LEEELEEEQGNMEAMSDRVRKATLQAEQLSNELATERSTAQKNESARQQLERQNKELRSKLQEVEGAVKAkLKSTVAALE 1080
Cdd:TIGR02168 745 LEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTL-LNEEAANLR 823
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1081 AKIAQLEEQVEQEAREKQAATKSLKQKDKKLKEVLLQVEDERKMAEQYKEQAEKgntkVKQLKRQLEEA----------- 1149
Cdd:TIGR02168 824 ERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEA----LLNERASLEEAlallrseleel 899
|
730 740 750 760
....*....|....*....|....*....|....*....|.
gi 568994733 1150 EEESQRINANRRKLQRELDEATESNEAMGREVNALKSKLRR 1190
Cdd:TIGR02168 900 SEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDN 940
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
225-821 |
3.29e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 87.68 E-value: 3.29e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 225 ARQKLQLEKVTAEAKIKKLEDDILVMDDQNSKLSKERKLLEERVSDLTTNLAEEEEKAKNLTKLKSKHESMISELEVRLK 304
Cdd:COG1196 209 AEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQA 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 305 KEEKSRQELEklkrKLEGDASDFHEQIADLQAQIAELKMQLAKKEEELQAALARLDEEIAQKNNALKKIRELEGHISDLQ 384
Cdd:COG1196 289 EEYELLAELA----RLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 385 EDLDSERAARNKAEKQKRDLGEELEALKTELEDTLDSTATQQELRAKREQEvtvlKKALDEETRSHEAQVQEMRQKHTQA 464
Cdd:COG1196 365 EALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLER----LERLEEELEELEEALAELEEEEEEE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 465 VEELTEQLEQFKRAKANLDKSKQTLEKENADLAGELRVLGQAKQEVEHKKKKLEVQLQDLQSKCSDGERARAELSDKVHK 544
Cdd:COG1196 441 EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLR 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 545 LQNEVESVTGMLNEAEGKAIKLAKDVASLGSQLQDTQELLQEETRQKLNVSTKLRQLEDERnSLQDQLDEEMEAKQNLER 624
Cdd:COG1196 521 GLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDK-IRARAALAAALARGAIGA 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 625 HVSTLNIQLSDSKKKLQDFASTIEV-------MEEGKKRLQKEMEGLSQQYEEKAAAYDKLEKTKNRLQQELDDLVVDLD 697
Cdd:COG1196 600 AVDLVASDLREADARYYVLGDTLLGrtlvaarLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEA 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 698 NQRQLVSNLEKKQKKFDQLLAEEKNISSKYADERDRAEAEAREKETKALSLARALEEALEAKEELERTNKMLKAEMEDLV 777
Cdd:COG1196 680 ELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEP 759
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 568994733 778 SSKDDVGKNVHELEKSKRAL--------------ETQMEEMKTQLEELEDELQATEDA 821
Cdd:COG1196 760 PDLEELERELERLEREIEALgpvnllaieeyeelEERYDFLSEQREDLEEARETLEEA 817
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
104-692 |
3.39e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 84.22 E-value: 3.39e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 104 LLQVTRQEEEMQAKEEEMQKIKERQQKAETELKELEQKHTQLAEEKTLLQEQLQAETELYAEAEEMRVRLAAKKQELEEI 183
Cdd:COG1196 231 LLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 184 LHEMEARLEEEEDRGQQLQAERKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNSKLSKERKL 263
Cdd:COG1196 311 RRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 264 LEERVSDLTTNLAEEEEKAKNLTKLKSKHESMISELEVRLKKEEKSRQELEKLKRKLEGDASDFHEQIADLQAQIAELKM 343
Cdd:COG1196 391 ALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 344 QLAKKEEELQAALARLDEEIAQKNNALKKIRELEGHISDLQEDLDSERAARN---------KAEKQKRDLGEELEALKTE 414
Cdd:COG1196 471 EAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLagavavligVEAAYEAALEAALAAALQN 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 415 LEDTLDSTATQQELRAKREQEVTVLKKALDEETRSHEAQVQEMRQKHTQAVEELTEQLEQFKRAKANLDKSKQTLEKENA 494
Cdd:COG1196 551 IVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAA 630
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 495 DLAGELRVLGQAKQEVEHKKKKLEVQLQdlqskcsDGERARAELSDKVHKLQNEVESVTGMLNEAEGKAIKLAKDVASLG 574
Cdd:COG1196 631 RLEAALRRAVTLAGRLREVTLEGEGGSA-------GGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEE 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 575 SQLQDTQELLQEETRQKLNVSTKLRQLEDERNSLQDQLDEEMEAKQNLERHVSTLNIQLSDSKKKLqdfastievmeegk 654
Cdd:COG1196 704 EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELEREL-------------- 769
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 568994733 655 KRLQKEMEGLS-------QQYEEKAAAYDKLEKTKNRLQQELDDL 692
Cdd:COG1196 770 ERLEREIEALGpvnllaiEEYEELEERYDFLSEQREDLEEARETL 814
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
532-1092 |
2.50e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 81.52 E-value: 2.50e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 532 ERARAELSDKVHKLQNEVESVTGMLNEAEGKAIKLAKDVASLGSQLQDTQELLQEETRQKLNVSTKLRQLEDERNSLQDQ 611
Cdd:COG1196 224 ELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQD 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 612 LDEEMEAKQNLERHVSTLNIQLSDSKKKLQDFASTIEVMEEGKKRLQKEMEGLSQQYEEKAAAYDKLEKTKNRLQQELDD 691
Cdd:COG1196 304 IARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEE 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 692 LVVDLDNQRQLVSNLEKKQKKFDQLLAEEKNISSKYADERDRAEAEAREKETKALSLARALEEALEAKEELERTNKMLKA 771
Cdd:COG1196 384 LAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLE 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 772 EMEDLVSSKDDVGKNVHELEKSKRALETQMEEMKTQLEELEDELQATEDAKLRLEVNMQALKGQFERDLQARDEQNEEKR 851
Cdd:COG1196 464 LLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAA 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 852 RQLQRQlheyETELEDERKQRALAAAAKKKLEGDLKDLELQADSAIKGREEAIKQLRKLQAqMKDFQRELDDARASRDEI 931
Cdd:COG1196 544 LAAALQ----NIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAA-VDLVASDLREADARYYVL 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 932 FATSKENEKKAKSLEADLMQLQEDLAAAERARKQADLEKEELAEELASSLSGRNTLQDEKRRLEARIAQLEEELEEEQGN 1011
Cdd:COG1196 619 GDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEA 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1012 MEAMSDRVRKATLQAEQLSNELATERSTAQKNESARQQLERQNKELRSKLQEVEGAVKAKLKStVAALEAKIAQLEEQVE 1091
Cdd:COG1196 699 LLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPD-LEELERELERLEREIE 777
|
.
gi 568994733 1092 Q 1092
Cdd:COG1196 778 A 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
584-1202 |
2.95e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 81.26 E-value: 2.95e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 584 LQEETRQKLNVSTKLRQLEDERNSLQDQLDEEMEAKQNLERHVSTLNIQLSDSKKKLQDFASTIEVMEEGKKRLQKEMEG 663
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 664 LSQQYEEKAAAYDKLEKTKNRLQQELDDLVVDLDNQRQLVSNLEKKQKKFDQLLAEEKNISSKYADERDRAEAEAREKET 743
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLEL 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 744 KALSLARALEEALEAKEELERTNKMLKAEMEDLVSSKDDvgKNVHELEKSKRALETQMEEMKTQLEELEDELQATEDAKL 823
Cdd:TIGR02168 394 QIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE--AELKELQAELEELEEELEELQEELERLEEALEELREELE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 824 RLEVNMQALKGQFERdLQARDEQNEEKRRQLQrQLHEYETELEDERKQRALAAAAKKKLEGDLKDLELQADSAIKGREEA 903
Cdd:TIGR02168 472 EAEQALDAAERELAQ-LQARLDSLERLQENLE-GFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQA 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 904 IkqlrklqaqmkdfqrELDDARASRDEIFATSKENEKKAKSLEADLMQLQEDLAAAERARKQADLEKEELAEELASSLSG 983
Cdd:TIGR02168 550 V---------------VVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKL 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 984 RNTLQDEKRRLeaRIAQLEEELEEEQGNMEAmsdRVRKATLQAEQLSNELATERSTAQKNeSARQQLERQNKELRSKLQE 1063
Cdd:TIGR02168 615 RKALSYLLGGV--LVVDDLDNALELAKKLRP---GYRIVTLDGDLVRPGGVITGGSAKTN-SSILERRREIEELEEKIEE 688
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1064 VEGAVkAKLKSTVAALEAKIAQLEEQVEQEAREKQAATKSLKQKDKKLKEVLLQVEDERKMAEQYKEQAEKGNTKVKQLK 1143
Cdd:TIGR02168 689 LEEKI-AELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELE 767
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 568994733 1144 RQLEEAEEESQRINANRRKLQRELDEATESNEAMGREVNALKSKLRRGNEASFVPSRRA 1202
Cdd:TIGR02168 768 ERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERL 826
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
406-1000 |
3.89e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 80.75 E-value: 3.89e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 406 EELEALKTELEDTLDSTATQQElRAKREQEvtvLKKALDEetRSHEAQVQEMRQKHTQAvEELTEQLEQFKRAKANLDKS 485
Cdd:COG1196 189 ERLEDILGELERQLEPLERQAE-KAERYRE---LKEELKE--LEAELLLLKLRELEAEL-EELEAELEELEAELEELEAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 486 KQTLEKENADLAGELRVLGQAKQEVEHKKKKLEVQLQDLQSKCSDGERARAELSDKVHKLQNEVESVTGMLNEAEGKAIK 565
Cdd:COG1196 262 LAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 566 LAKDVASLGSQLQDTQELLQEETRQKLNVSTKLRQLEDERNSLQDQLDEEMEAKQNLERHVSTLNIQLSDSKKKLQDFAS 645
Cdd:COG1196 342 LEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 646 TIEVMEEGKKRLQKEMEGLSQQYEEKAAAYDKLEKTKNRLQQELDDLVVDLDNQRQLVSNL----EKKQKKFDQLLAEEK 721
Cdd:COG1196 422 ELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELleelAEAAARLLLLLEAEA 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 722 NISSKYADERDRAEAEAREKETKALSLARALEEALEAKEELErtnkmLKAEMEDLVSSKDDVGKNVHELEKSK---RALE 798
Cdd:COG1196 502 DYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAA-----LAAALQNIVVEDDEVAAAAIEYLKAAkagRATF 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 799 TQMEEMKTQLEELEDELQATEDAKLRLEVNMQALKGQFERDLQARDEQNEEKRRQLQRQLHEYETELEDERKQRALAAAA 878
Cdd:COG1196 577 LPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGG 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 879 KKKLEGDLKDLELQADSAIKGREEAIKQLRKLQAQMKDFQRELDDARASRDEIFATSKENEKKAKSLEADLMQLQEDLAA 958
Cdd:COG1196 657 SAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREE 736
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 568994733 959 AERARKQADLEKEELAEELASSLSGRNTLQDEKRRLEARIAQ 1000
Cdd:COG1196 737 LLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
373-1178 |
5.59e-15 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 80.50 E-value: 5.59e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 373 IRELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTELEDTLDSTATQQELRAKREQEVTVLKKALDEETRSHEA 452
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 453 QVQEMRQKhtqaVEELTEQLEQFKRAKANLDKSKQTLEKENADLAGELRVLGQAK-QEVEHKKKKLEVQLQDLQSKCSDG 531
Cdd:TIGR02169 245 QLASLEEE----LEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKiGELEAEIASLERSIAEKERELEDA 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 532 ERARAELSDKVHKLQNEVESVTGMLNEAEGKAIKLAKDVASLGSQLQDTQELLQE------ETRQKL-NVSTKLRQLEDE 604
Cdd:TIGR02169 321 EERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEvdkefaETRDELkDYREKLEKLKRE 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 605 RNSLQDQLDEEMEAKQNLERHVSTLNIQLSDSKKKLQDFASTIEVmeegkkrLQKEMEGLSQQYEEKAAAYDKLEKTKNR 684
Cdd:TIGR02169 401 INELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKED-------KALEIKKQEWKLEQLAADLSKYEQELYD 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 685 LQQELDdlvvdldnqrQLVSNLEKKQKKFDQLLAeEKNISSKYADERDRAEAEAREKETKALSLARALEEALEAKEELER 764
Cdd:TIGR02169 474 LKEEYD----------RVEKELSKLQRELAEAEA-QARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIE 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 765 TnkMLKAEMEDLVSSKDDVGKNVHELEKSKRALETQMEEMKTQLEELEDELQATEDAKLRLEVNMQALKGQFE------- 837
Cdd:TIGR02169 543 V--AAGNRLNNVVVEDDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEpafkyvf 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 838 RDLQARDEQNEEKRRQLQRQLHEYETELEDE--------RKQRALAAAAKKKLE------GDLKDLELQADSAIKGREEA 903
Cdd:TIGR02169 621 GDTLVVEDIEAARRLMGKYRMVTLEGELFEKsgamtggsRAPRGGILFSRSEPAelqrlrERLEGLKRELSSLQSELRRI 700
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 904 IKQLRKLQAQMKDFQRELDDARASRDEIFATSKENEKKAKSLEADLMQLQEDLAAAERARKQADLEKEELAEELasslsg 983
Cdd:TIGR02169 701 ENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDL------ 774
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 984 rNTLQDEKRRLEARIAQleEELEEEQGNMEAMSDRVRKATLQAEQLSNELATERSTAQKNESARQQLERQNKELRSKLQE 1063
Cdd:TIGR02169 775 -HKLEEALNDLEARLSH--SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKS 851
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1064 VEGAV------KAKLKSTVAALEAKIAQLEEQVEQEAREKQAATKSLKQKDKKLKEVLLQVEDERKMAEQYKEQAEKGNT 1137
Cdd:TIGR02169 852 IEKEIenlngkKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEE 931
|
810 820 830 840
....*....|....*....|....*....|....*....|.
gi 568994733 1138 KVKQLKRQLEEAEEESQRInANRRKLQRELDEATESNEAMG 1178
Cdd:TIGR02169 932 ELSEIEDPKGEDEEIPEEE-LSLEDVQAELQRVEEEIRALE 971
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
122-966 |
7.21e-15 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 80.11 E-value: 7.21e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 122 QKIKERQQKAETE--LKELEQKHTQLAEEKTLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEEDRGQ 199
Cdd:TIGR02169 214 QALLKEKREYEGYelLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVK 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 200 ----QLQAERKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNSKLSKERKLLEERVSDLTTNL 275
Cdd:TIGR02169 294 ekigELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAEL 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 276 AEEEEKAKNLTKLKSKHESMISELEVRLKKEEKSRQELEKLKRKLEGDASDFHEQIADLQAQIAELKMQLAKKEEELQAA 355
Cdd:TIGR02169 374 EEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQ 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 356 LARLDEEIAQKNNALKKIRELEGHISDLQEDLDSERAARNKAEKQKRDLGEELE---ALKTELEDTLDST-ATQQELRAK 431
Cdd:TIGR02169 454 EWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRggrAVEEVLKASIQGVhGTVAQLGSV 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 432 REQEVTVLKKALDeetrsheAQVQEMRQKHTQAVEELTEQLEQFKRAKAN-LDKSKQTLEKENADLAGELRVLGQAKQEV 510
Cdd:TIGR02169 534 GERYATAIEVAAG-------NRLNNVVVEDDAVAKEAIELLKRRKAGRATfLPLNKMRDERRDLSILSEDGVIGFAVDLV 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 511 EHKKKKLEVQLQDLQSK--CSDGERARAEL-SDKVHKLQNEVESVTGMLNEAEGKAIKLAKDVASLGSQLQDTQELLQEe 587
Cdd:TIGR02169 607 EFDPKYEPAFKYVFGDTlvVEDIEAARRLMgKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEG- 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 588 trqklnvstklrqLEDERNSLQDQLDEemeakqnLERHVSTLNIQLSDSKKKLQDFASTIEvmeegkkRLQKEMEGLSQQ 667
Cdd:TIGR02169 686 -------------LKRELSSLQSELRR-------IENRLDELSQELSDASRKIGEIEKEIE-------QLEQEEEKLKER 738
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 668 YEEKAAAYDKLEKTKNRLQQELDDLVVDLDNQRQLVSNLEKKQKKFDQLLAEEKniSSKYADERDRAEAEAREKETKALS 747
Cdd:TIGR02169 739 LEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR--IPEIQAELSKLEEEVSRIEARLRE 816
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 748 LARALEEALEAKEELERTNKMLKAEMEDLVSSKDDVGKNVHELEKSKRALETQMEEMKTQLEELEDELQatedaklrlev 827
Cdd:TIGR02169 817 IEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLG----------- 885
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 828 nmqalkgqferDLQARDEQNEEKRRQLQRQLHEYETELEDERKQRALAAAAKKKLEGDLKDLElQADSAIKGREEAIKQL 907
Cdd:TIGR02169 886 -----------DLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIE-DPKGEDEEIPEEELSL 953
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568994733 908 RKLQAQMKDFQRELDD-------ARASRDEIFATSKENEKKAKSLEADLMQLQEDLAAAERARKQA 966
Cdd:TIGR02169 954 EDVQAELQRVEEEIRAlepvnmlAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREV 1019
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
889-1170 |
1.51e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.83 E-value: 1.51e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 889 LELQADSAIKGREEAIKQLRKLQAQMKDFQRELDDARASRDEIFATSKENEKKAKSLEADLMQLQEDLAAAERARKQADL 968
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 969 EKEELAEELASSLSGRNTLQDEKRRLEARIAQLEEELEEEQGNMEAMSDRVRKATLQAEQLSNELATERSTAQKNESARQ 1048
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1049 QLERQNKELRSKLQEvegavkakLKSTVAALEAKIAQLEEQVEQEAREKQAATKSLKQKDKKLKEVLLQVEDERKMAEQY 1128
Cdd:COG1196 376 EAEEELEELAEELLE--------ALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA 447
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 568994733 1129 KEQAEKGNTKVKQLKRQLEEAEEESQRINANRRKLQRELDEA 1170
Cdd:COG1196 448 AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA 489
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
430-1184 |
5.67e-14 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 77.49 E-value: 5.67e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 430 AKREQEVTVLKKALDEETRSheaqvqEMRQKHTQAVEELTEQLEQFKRAKANLDKSKQTLEKENADLAGELRVLGQAKQE 509
Cdd:PTZ00121 1075 SYKDFDFDAKEDNRADEATE------EAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKA 1148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 510 VEHKKKKLEVQLQDLQskcsdgeraRAELSDKVHKLQnEVESVTGMLNEAEGKAIKLAKDVASLGSQLQDTQELLQEETR 589
Cdd:PTZ00121 1149 EDAKRVEIARKAEDAR---------KAEEARKAEDAK-KAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEAR 1218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 590 QklnvSTKLRQLEDERNSLQDQLDEEMEAKQNLERHVSTLNiqlSDSKKKLQDFASTIEVMEEGKKRLQKEMeglsQQYE 669
Cdd:PTZ00121 1219 K----AEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIR---KFEEARMAHFARRQAAIKAEEARKADEL----KKAE 1287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 670 EKAAAYDKLEKTKNRLQQELDDLVVDLDNQRQLVSNLEKKQKKFDQllAEEKNISSKYADERDRAEAEAREKETKALSLA 749
Cdd:PTZ00121 1288 EKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADA--AKKKAEEAKKAAEAAKAEAEAAADEAEAAEEK 1365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 750 RALEEALEAKEELERTNKMLKAEMEdlvsskddvgKNVHELEKSKRALETQMEEMKTQLEELEDELQATEDAKLRLEVNM 829
Cdd:PTZ00121 1366 AEAAEKKKEEAKKKADAAKKKAEEK----------KKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADE 1435
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 830 QALKGQFERDLQARDEQNEEKRRQLQRQLHEYETELEDERKQRALAAAAKKKLEGDLKDLELQADSAIKGREEAIKQLRK 909
Cdd:PTZ00121 1436 AKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEA 1515
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 910 LQAQMKDFQRELDDARASRDEIFATSKENEKKAKSL-EADLMQLQEDLAAAERARKQADLEKEELAEELASslsgrntlq 988
Cdd:PTZ00121 1516 KKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELkKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEA--------- 1586
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 989 deKRRLEARIAQLEEELEEEQGNMEAMSDRVRKATLQAEQLSNElatERSTAQKNESARQQLERQNKELRSKLQEVEGAV 1068
Cdd:PTZ00121 1587 --KKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA---EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKI 1661
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1069 KAKLKSTVAALEAKIAQLEEQVEQEAREKQAATKSLKQKDKKLKEVLLQVEDERKMAEQYKEQAEKGNTKVKQLKRQLEE 1148
Cdd:PTZ00121 1662 KAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEE 1741
|
730 740 750
....*....|....*....|....*....|....*....
gi 568994733 1149 AE---EESQRINANRRKLQRELDEATESNEAMGREVNAL 1184
Cdd:PTZ00121 1742 DKkkaEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAV 1780
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
791-1221 |
4.61e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.20 E-value: 4.61e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 791 EKSKRALETQMEEMKTQLEELEDELQATEDAKLRLEVNMQALKGQFERDLQARDEQNEEkRRQLQRQLHEYETELEDERK 870
Cdd:COG1196 224 ELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELE-LEEAQAEEYELLAELARLEQ 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 871 QRALAAAAKKKLEGDLKDLELQADSAIKGREEAIKQLRKLQAQMKDFQRELDDARASRDEIFATSKENEKKAKSLEADLM 950
Cdd:COG1196 303 DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 951 QLQEDLAAAERARKQADLEKEELAEELASSLSGRNTLQDEKRRLEARIAQLEEELEEEQGNMEAMSDRVRKATLQAEQLS 1030
Cdd:COG1196 383 ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1031 NELATERSTAQKNESARQQLERQNKELRSKLqevegavkAKLKSTVAALEAKIAQLEEQVEQEAREKQAATKSLKQKDKK 1110
Cdd:COG1196 463 ELLAELLEEAALLEAALAELLEELAEAAARL--------LLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEA 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1111 LKEVLLQVEDERKMAEQYKEQAEKGNTKVKQLKRQLEEAEEESQRINANRRKLQRELDEAtesnEAMGREVNALKSKLRR 1190
Cdd:COG1196 535 AYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALAR----GAIGAAVDLVASDLRE 610
|
410 420 430
....*....|....*....|....*....|.
gi 568994733 1191 GNEASFVPSRRAGGRRVIENTDGSEEEMDAR 1221
Cdd:COG1196 611 ADARYYVLGDTLLGRTLVAARLEAALRRAVT 641
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
256-833 |
5.82e-13 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 73.52 E-value: 5.82e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 256 KLSKERKLLEERVSDLTTNLAEEEEKAKNLTKLKSKHESMISELEVRLKKEEKSRQELEKLKRKLEGDASDFHEQIADLQ 335
Cdd:TIGR04523 44 TIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLE 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 336 AQIAELKMQLAKKEEELQAALARLDEEIAQKNNALKKIRELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTEL 415
Cdd:TIGR04523 124 VELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLL 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 416 EDTLDSTATQQELRAK---REQEVTVLKKALDEETRSHEAQVQEMRQKHTQ---AVEELTEQLEQFKRAKANLDKSKQ-- 487
Cdd:TIGR04523 204 SNLKKKIQKNKSLESQiseLKKQNNQLKDNIEKKQQEINEKTTEISNTQTQlnqLKDEQNKIKKQLSEKQKELEQNNKki 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 488 -TLEKENADLAGELRVLGQAKQEVEHKK-----KKLEVQLQDLQSKCSDGERARAELSDKVHKLQNEVESVTGMLNEAEG 561
Cdd:TIGR04523 284 kELEKQLNQLKSEISDLNNQKEQDWNKElkselKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQR 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 562 KAIKLAKDVASLGSQLQDTQELLQEETRQKLNVSTKLRQLEDERNSLQDQLDEEMEAKQNLERHVSTLNIQLSDSKKKLQ 641
Cdd:TIGR04523 364 ELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIK 443
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 642 DFASTIEVMEEGKKRLQKEMEGLSQQYEEKAAAYDKLEKTKNRLQQELDDLVVDLDNQRQLVSNLEKKQKKFDQLLAEEK 721
Cdd:TIGR04523 444 DLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLK 523
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 722 NISSKYADERDRAEAEAREKETKALSLARALEEALEAKEELERTNKM--LKAEMEDLVSSKDDVGKNVHELEKSKRALET 799
Cdd:TIGR04523 524 EKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIeeLKQTQKSLKKKQEEKQELIDQKEKEKKDLIK 603
|
570 580 590
....*....|....*....|....*....|....
gi 568994733 800 QMEEMKTQLEELEDELQATEDAKLRLEVNMQALK 833
Cdd:TIGR04523 604 EIEEKEKKISSLEKELEKAKKENEKLSSIIKNIK 637
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
300-826 |
2.42e-12 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 71.61 E-value: 2.42e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 300 EVRLKKEEKSRQELeklkrklegdasdfHEQIADLQAQIAELKMQLAKKEEELQAALARLDEE---IAQKNNALKKIREL 376
Cdd:PRK02224 191 QLKAQIEEKEEKDL--------------HERLNGLESELAELDEEIERYEEQREQARETRDEAdevLEEHEERREELETL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 377 EGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTELEDTLDSTatqqELRAKREQEVTVLKKALDEEtrshEAQVQE 456
Cdd:PRK02224 257 EAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEA----GLDDADAEAVEARREELEDR----DEELRD 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 457 MRQKHTQAVEELTEQLEQFKRAKANLDKSKQTLEKENADLAGELRVLGQAKQEVEHKKKKLEVQLQDLQSKCSDGERARA 536
Cdd:PRK02224 329 RLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLG 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 537 ELSDKVHKLQNEVESVTGMLNEAEGKaIKLAKDVASLGSQLQDT---------------QELLQEETRQKLNVSTKLRQL 601
Cdd:PRK02224 409 NAEDFLEELREERDELREREAELEAT-LRTARERVEEAEALLEAgkcpecgqpvegsphVETIEEDRERVEELEAELEDL 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 602 EDERNSLQDQLDEEMEAKQnLERHVSTLNIQLSDSKKKLQDFASTIEVMEEGKKRLQKEMEGLSQQYEEKAAAYDKLEKT 681
Cdd:PRK02224 488 EEEVEEVEERLERAEDLVE-AEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEE 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 682 KNRLQQELDDLVVDLDNQRQLVSNLEKKQKKFDQLLAEEKNISSKYADERDRAEAEAREKETkaLSLARALEEALEAKEE 761
Cdd:PRK02224 567 AEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRER--LAEKRERKRELEAEFD 644
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568994733 762 LERTNKmLKAEMEDLVSSKDDVGKNVHELEKSKRALETQMEEMKTQLEELE---DELQATEDAKLRLE 826
Cdd:PRK02224 645 EARIEE-AREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEelrERREALENRVEALE 711
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
798-1170 |
3.36e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.12 E-value: 3.36e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 798 ETQMEEMKTQLEELEDELQAtedaklrLEVNMQALKGQFERDLQARDEQNEEKRRQLQRQLHEYETELEDERKQralaaa 877
Cdd:COG1196 178 ERKLEATEENLERLEDILGE-------LERQLEPLERQAEKAERYRELKEELKELEAELLLLKLRELEAELEEL------ 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 878 akkklEGDLKDLELQADSAIKGREEAIKQLRKLQAQMKDFQRELDDARASRDEIfatskenEKKAKSLEADLMQLQEDLA 957
Cdd:COG1196 245 -----EAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYEL-------LAELARLEQDIARLEERRR 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 958 AAERARKQADLEKEELAEELASSLSGRNTLQDEKRRLEARIAQLEEELEEEQGNMEAMSDRVRKATLQAEQLSNELATER 1037
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1038 STAQKNESARQQLERQNKELRSKLQEVEGAVKAKLKSTVAALEAKIAQLEEQVEQEAREKQAATKSLKQKDKKLKEVLLQ 1117
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 568994733 1118 VEDERKMAEQYKEQAEKGNTKVKQLKRQLEEAEEESQRINANRRKLQRELDEA 1170
Cdd:COG1196 473 ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGA 525
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
122-965 |
6.99e-12 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 70.39 E-value: 6.99e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 122 QKIKERQQKAETELKELEQKHTQLAEEKTLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEEDRGQQL 201
Cdd:pfam02463 177 KLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESS 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 202 QAERKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNSKLSKERKLLEERVSDLTTNLAEEEEK 281
Cdd:pfam02463 257 KQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEE 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 282 AKNLTKLKSKHESMISELEvrlKKEEKSRQELEKLKRKLEGDASDFHEQIADLQAQIAELKMQLAKKEEELQAALARLDE 361
Cdd:pfam02463 337 IEELEKELKELEIKREAEE---EEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLEL 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 362 EIAQKNNALKKIRELEGHISDLQEDLDSERaaRNKAEKQKRDLGEELEALKTELEDTLDSTATQQELRAKREQEVTVLKK 441
Cdd:pfam02463 414 ARQLEDLLKEEKKEELEILEEEEESIELKQ--GKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLS 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 442 ALDEETRSHEAQVQEMRQKHTQAVEELTEQLEQFKRAKANLDKSKQTLEKENADLAGELRVLGQAKQEVEHKKKKLEVQL 521
Cdd:pfam02463 492 RQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALT 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 522 QDLQSKCSDGERARAELSDKVHKLQNEVESVTGMLNEAEGKAIKLAKDVASLGSQLQ-DTQELLQEETRQKLNVSTKLRQ 600
Cdd:pfam02463 572 ELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGIlKDTELTKLKESAKAKESGLRKG 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 601 LEDERNSLQDQLDEEMEAKQNLERHVSTLNIQLSDSKKKLQDFASTIEVMEEGKKRLQKEMEGLSQQYEEKAAAYDKLEK 680
Cdd:pfam02463 652 VSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQ 731
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 681 TKNRLQQELDDLVVDLDNQRQLVSNLEKKQKKFDQLLAEEKNISSKYADERDRAEAEAREKETKALSLARALEEALEAKE 760
Cdd:pfam02463 732 DKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELK 811
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 761 ELERTNKMLKAEMEDLVSSKDDVGKNVHELEKSKRALETQMEEMKTQLEELEDELQATEDAKLRLEVNMQALKGQFERDL 840
Cdd:pfam02463 812 EEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESK 891
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 841 QARDEQNEEKRRQLQRQLHEYETELEDERKQRALAAAAKKKLEGDLKDLELQADSAIKGREEAIKQLRKLQAQMKDFQRE 920
Cdd:pfam02463 892 EEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEE 971
|
810 820 830 840
....*....|....*....|....*....|....*....|....*
gi 568994733 921 LDDARASRDEIFATSKENEKKAKSLEADLMQLQEDLAAAERARKQ 965
Cdd:pfam02463 972 LGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETC 1016
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
147-853 |
2.19e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 69.01 E-value: 2.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 147 EEKTLLQEQLQAETelyAEAEEMRVRLAAKKQElEEILHEMEARLEEEEDRGQQLQAERKKMAQQMLDLEEQLEEEEAAR 226
Cdd:PTZ00121 1095 EAFGKAEEAKKTET---GKAEEARKAEEAKKKA-EDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEAR 1170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 227 QKLQLEKVTAEAKIKKLEDDILVMDDQNSKLSKERKLLEERVSDLTTNLAEEEEKAKNLTKLKskhesmiselEVRLKKE 306
Cdd:PTZ00121 1171 KAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAE----------EAKKDAE 1240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 307 EKSRQELEklkRKLEGDASDFHEQIADLQAQIAELKMQLAKKEEELQAALARLDEEIAQKNNALKKIRELEGHisdlQED 386
Cdd:PTZ00121 1241 EAKKAEEE---RNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKK----AEE 1313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 387 LDSERAARNKAEKQKRDlGEELEAlKTELEDTLDSTATQQELRAKREQEVTVLKKALDEETRSHEAQVQEMRQKHTQAV- 465
Cdd:PTZ00121 1314 AKKADEAKKKAEEAKKK-ADAAKK-KAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKk 1391
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 466 --EELTEQLEQFKRAKANLDKSKQTLEK--ENADLAGELRVLGQAKQEVEHKKKKLEVQLQDLQSKCSDGERARAELSDK 541
Cdd:PTZ00121 1392 kaDEAKKKAEEDKKKADELKKAAAAKKKadEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK 1471
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 542 VHKLQNEVESVTGMlNEAEGKAIKLAKDVASLGSQLQDTQELLQEETRQKLNVSTKLRQLEDERNSLQDQLDEEM----E 617
Cdd:PTZ00121 1472 ADEAKKKAEEAKKA-DEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKkkadE 1550
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 618 AKQNLERHVSTLNIQLSDSKKKLQDFASTIEVMEEGKKRLQKEMEGLSQQYEE----KAAAYDKLEKTKNRlQQELDDLV 693
Cdd:PTZ00121 1551 LKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEekkmKAEEAKKAEEAKIK-AEELKKAE 1629
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 694 VDLDNQRQLVSNLEKKQKKFDQLLAEEKNISSKYADERDRAEAEAREKET--KALSLARALEEALEAKEELERTNKMLKA 771
Cdd:PTZ00121 1630 EEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEakKAEEDEKKAAEALKKEAEEAKKAEELKK 1709
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 772 EMEDLVSSKDDVGKNVHELEKSKRALETQMEEMKTQLEELE-DELQATEDAKLRLEVNMQALKGQFERDLQARDEQNEEK 850
Cdd:PTZ00121 1710 KEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKkDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEED 1789
|
...
gi 568994733 851 RRQ 853
Cdd:PTZ00121 1790 EKR 1792
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
124-659 |
3.85e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 67.78 E-value: 3.85e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 124 IKERQQKAETELKELEQKHTQLAEEKTLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEEDRGQQLQA 203
Cdd:PRK03918 191 IEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 204 ERKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEddilvMDDQNSKLSKERKLLEERVSDLTtnlaEEEEKAK 283
Cdd:PRK03918 271 LKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELRE-----IEKRLSRLEEEINGIEERIKELE----EKEERLE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 284 NLTKLKSKHESMISELEVRLKKEEKSRQELEKLKRKLEGDASDFHEQIADLQAQIAELKMQLAKKEEELQAALARLDEEI 363
Cdd:PRK03918 342 ELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEI 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 364 AQKNNALKKIRELEGHISDLQEDLDSE---------RAARNKAEKQKRDLGEELEALKTELEDTLDSTATQQELRakREQ 434
Cdd:PRK03918 422 KELKKAIEELKKAKGKCPVCGRELTEEhrkelleeyTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELI--KLK 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 435 EVTVLKKALDEETRSHEAQVQEMRQKHTQAVEELT--------------EQLEQFKRAKANLDKSKQTLEKENADLAGEL 500
Cdd:PRK03918 500 ELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLiklkgeikslkkelEKLEELKKKLAELEKKLDELEEELAELLKEL 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 501 RVLG-QAKQEVEHKKKKLEvQLQDLQSKCSDGERARAELSDKVHKLQNEVESVTGMLNEAEGKAIKLAKDVASLGSQLqd 579
Cdd:PRK03918 580 EELGfESVEELEERLKELE-PFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKY-- 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 580 TQELLQEETRQKLNVSTKLRQLEDERNSLQDQLDEEMEAKQNLERHVSTlniqLSDSKKKLQDFASTIEVMEEGKKRLQK 659
Cdd:PRK03918 657 SEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEE----REKAKKELEKLEKALERVEELREKVKK 732
|
|
| MYSc_Myh10 |
cd14920 |
class II myosin heavy chain 10, motor domain; Myosin motor domain of non-muscle myosin heavy ... |
1-31 |
7.55e-11 |
|
class II myosin heavy chain 10, motor domain; Myosin motor domain of non-muscle myosin heavy chain 10 (also called NMMHCB). Mutations in this gene have been associated with May-Hegglin anomaly and developmental defects in brain and heart. Multiple transcript variants encoding different isoforms have been found for this gene. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276952 [Multi-domain] Cd Length: 673 Bit Score: 66.57 E-value: 7.55e-11
10 20 30
....*....|....*....|....*....|.
gi 568994733 1 MDGKQACILMIKALELDPNLYRIGQSKIFFR 31
Cdd:cd14920 643 MDGKQACERMIRALELDPNLYRIGQSKIFFR 673
|
|
| MYSc_Myh18 |
cd14932 |
class II myosin heavy chain 18, motor domain; Myosin motor domain of muscle myosin heavy chain ... |
1-31 |
7.81e-11 |
|
class II myosin heavy chain 18, motor domain; Myosin motor domain of muscle myosin heavy chain 18. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276895 [Multi-domain] Cd Length: 676 Bit Score: 66.59 E-value: 7.81e-11
10 20 30
....*....|....*....|....*....|.
gi 568994733 1 MDGKQACILMIKALELDPNLYRIGQSKIFFR 31
Cdd:cd14932 646 MDGKQACVLMVKALELDPNLYRIGQSKVFFR 676
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
508-1189 |
1.15e-10 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 66.35 E-value: 1.15e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 508 QEVEHKKKKLEVQLQDLQSKcsdgeraRAELSDKVHKLQNEVESVTGMLNEAEGKAIKLAKDVASLGSQLQDTQELLQEE 587
Cdd:pfam01576 15 QKVKERQQKAESELKELEKK-------HQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEILHELESRLEEE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 588 TRQKLNVSTKLRQLEDERNSLQDQLDEEMEAKQNLERHVSTLNIQLSDSKKKLQDFASTIEVMEEGKKRLQKEMEGLSQQ 667
Cdd:pfam01576 88 EERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEFTSN 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 668 YEEKAAAYDKLEKTKNRLQQELDDLVVDLDNQRQLVSNLEKKQKKFDQLLAEEKNISSKYADERDRAEAEAREKETKALS 747
Cdd:pfam01576 168 LAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQA 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 748 LARALEEALEAKEELERTNKMLKAEMEDLVSSKDDVGKNVHELEKSKRALETQMEEMKTQLEELEDELQATEDAKLRLEV 827
Cdd:pfam01576 248 ALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQ 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 828 NMQALKGQFERDLQARDEQNEEKRRQLQRQLHEYETELEDERKQRALAAAAKKKLEGDLKDLELQADSAIKGREEAIKQL 907
Cdd:pfam01576 328 EVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKR 407
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 908 RKLQAQMKDFQRELDDARASRDEIFATSKENEKKAKSLEADLMQLQEDLAAAERARKQADLEKEELAEELASSLSGRNTL 987
Cdd:pfam01576 408 KKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNL 487
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 988 QDEKRRLEARIAQLEEELEEEQGNMEAMSDRVRKATLQAEQLSNELATERSTAQKNESARQQLERQNKELRSKLQEVEGA 1067
Cdd:pfam01576 488 STRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAA 567
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1068 VKaKLKSTVAALEAKIAQLEEQVEQEAREKQAATKSLKQKDKKLKE---VLLQVEDERKMAEQykeQAEKGNTKVKQLKR 1144
Cdd:pfam01576 568 YD-KLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEekaISARYAEERDRAEA---EAREKETRALSLAR 643
|
650 660 670 680
....*....|....*....|....*....|....*....|....*
gi 568994733 1145 QLEEAEEESQRINANRRKLQRELDEATESNEAMGREVNALKSKLR 1189
Cdd:pfam01576 644 ALEEALEAKEELERTNKQLRAEMEDLVSSKDDVGKNVHELERSKR 688
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
126-611 |
1.46e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 65.83 E-value: 1.46e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 126 ERQQKAETELKELEQKHTQLAEEKTLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEEDRGQQLQAER 205
Cdd:PRK02224 206 ERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLR 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 206 kkmaqqmLDLEEQLEEEEAARQKLQLEKVTAEAkikkleddilvMDDQNSKLSKERKLLEERVSDLTTNLAEEEEKAKNL 285
Cdd:PRK02224 286 -------ERLEELEEERDDLLAEAGLDDADAEA-----------VEARREELEDRDEELRDRLEECRVAAQAHNEEAESL 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 286 TKlkskhesMISELEVRLKKEEKSRQELEKLKRKLEGDASDFHEQIADLQAQIAELKMQLAKKEEELQAALARLDEEIAQ 365
Cdd:PRK02224 348 RE-------DADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 366 KNNALKKIRELEGHISDLQEDLDSERAARNK----------AEKQKRDLGEELEALKTELEDTLDSTATQQELRAKREQE 435
Cdd:PRK02224 421 RDELREREAELEATLRTARERVEEAEALLEAgkcpecgqpvEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLER 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 436 VTVLKKALDEETRSHEAQ--VQEMRQKHTQAVEELTEQLEQFKRAKANLD-------KSKQTLEKENADLAGELRVLGQA 506
Cdd:PRK02224 501 AEDLVEAEDRIERLEERRedLEELIAERRETIEEKRERAEELRERAAELEaeaeekrEAAAEAEEEAEEAREEVAELNSK 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 507 KQEVEHKKKKLEvQLQDLQSKCSDGERARAELSDKVHKLQNEVESVTGMLNEAEGKAIKLAKDVAslGSQLQDTQELLQE 586
Cdd:PRK02224 581 LAELKERIESLE-RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFD--EARIEEAREDKER 657
|
490 500
....*....|....*....|....*
gi 568994733 587 ETRQKLNVSTKLRQLEDERNSLQDQ 611
Cdd:PRK02224 658 AEEYLEQVEEKLDELREERDDLQAE 682
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
122-744 |
3.55e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 64.78 E-value: 3.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 122 QKIKERQQKAETELKELEQKHTQLAEEKTLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEEDRGQQL 201
Cdd:PTZ00121 1230 KKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKK 1309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 202 QAERKKMAQQMLDL-EEQLEEEEAARQKLQLEKVTAEAKIKKLE--DDILVMDDQNSKLSKERKLLEERVSDLTTNLAEE 278
Cdd:PTZ00121 1310 KAEEAKKADEAKKKaEEAKKKADAAKKKAEEAKKAAEAAKAEAEaaADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEE 1389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 279 EEKAKNLTKLKSKHESMISELEvrlKKEEKSRQELEKLKRKLEGDASDFHEQIADLQAQIAELKmqlAKKEEELQAALAR 358
Cdd:PTZ00121 1390 KKKADEAKKKAEEDKKKADELK---KAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAK---KKAEEAKKAEEAK 1463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 359 LDEEIAQKNNALKKIRELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTELEDTLDSTATQQELRAKREQEVTV 438
Cdd:PTZ00121 1464 KKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAE 1543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 439 LKKALDEETRSHEAQVQEMRQKHTQAVEELTEQLEQFKRAkanldkskqtlekENADLAGELRVLGQAKQEVEHKKKKLE 518
Cdd:PTZ00121 1544 EKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKA-------------EEAKKAEEARIEEVMKLYEEEKKMKAE 1610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 519 vqlqdlQSKCSDGERARAELSDKVHKLQNEVESVTGMLNEAEGKAiklakdvaslgsqlqdtQELLQEETRQKLNVSTKL 598
Cdd:PTZ00121 1611 ------EAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKA-----------------EELKKAEEENKIKAAEEA 1667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 599 RQLEDERNSLQDQLDEEMEAKQNLErhvstlniqlsdSKKKLQDFASTIEVMEEGKKRLQKEMEGLSQQYEEKAAAYDKL 678
Cdd:PTZ00121 1668 KKAEEDKKKAEEAKKAEEDEKKAAE------------ALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEA 1735
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568994733 679 EKTKNRLQQELDDLVVDLDNQRQLVSNLEKKQKKFDQLLAEEKNISSKYADERDRAEAEAREKETK 744
Cdd:PTZ00121 1736 KKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIK 1801
|
|
| MYSc_Myh11 |
cd14921 |
class II myosin heavy chain 11, motor domain; Myosin motor domain of smooth muscle myosin ... |
1-31 |
4.37e-10 |
|
class II myosin heavy chain 11, motor domain; Myosin motor domain of smooth muscle myosin heavy chain 11 (also called SMMHC, SMHC). The gene product is a subunit of a hexameric protein that consists of two heavy chain subunits and two pairs of non-identical light chain subunits. It functions as a major contractile protein, converting chemical energy into mechanical energy through the hydrolysis of ATP. The gene encoding a human ortholog of rat NUDE1 is transcribed from the reverse strand of this gene, and its 3' end overlaps with that of the latter. Inversion of the MYH11 locus is one of the most frequent chromosomal aberrations found in acute myeloid leukemia. Alternative splicing generates isoforms that are differentially expressed, with ratios changing during muscle cell maturation. Mutations in MYH11 have been described in individuals with thoracic aortic aneurysms leading to acute aortic dissections with patent ductus arteriosus. MYH11 mutations are also thought to contribute to human colorectal cancer and are also associated with Peutz-Jeghers syndrome. The mutations found in human intestinal neoplasia result in unregulated proteins with constitutive motor activity, similar to the mutant myh11 zebrafish. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276885 [Multi-domain] Cd Length: 673 Bit Score: 63.88 E-value: 4.37e-10
10 20 30
....*....|....*....|....*....|.
gi 568994733 1 MDGKQACILMIKALELDPNLYRIGQSKIFFR 31
Cdd:cd14921 643 MDGKQACILMIKALELDPNLYRIGQSKIFFR 673
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
133-716 |
4.56e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 64.31 E-value: 4.56e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 133 TELKELEQKHTQLAEEKTLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEEDRGQQLQAERKKMaqqm 212
Cdd:PRK03918 155 LGLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEV---- 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 213 ldleEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNSKLSKERKLLEERVSDLtTNLAEEEEKAKNLTKLKSKH 292
Cdd:PRK03918 231 ----KELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL-KELKEKAEEYIKLSEFYEEY 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 293 ESMISELEVRLKKEEKSRQELEKLKRKLEGDASDFHEqiadlqaqiaelkmqLAKKEEELQAALARLDEEIAQKNNALKK 372
Cdd:PRK03918 306 LDELREIEKRLSRLEEEINGIEERIKELEEKEERLEE---------------LKKKLKELEKRLEELEERHELYEEAKAK 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 373 IRELEGHISDLQ----EDLDSERAARNKAEKQKRDLGEELEALKTELEDTLDSTATQQELRAKREQEVTVLKKALDEETR 448
Cdd:PRK03918 371 KEELERLKKRLTgltpEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHR 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 449 sheaqvQEMRQKHTQAVEELTEQLEQFKRAKANLDKSKQTLEKENADLAGELRVLGQAKQEVEHKKKKLEVQLQDLQSKC 528
Cdd:PRK03918 451 ------KELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKA 524
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 529 SDGERARaELSDKVHKLQNEVESVTGMLNEAEGKAIKLAKDVASLGSQLQDTQELLQEETRQKL-NVSTKLRQLEdernS 607
Cdd:PRK03918 525 EEYEKLK-EKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVeELEERLKELE----P 599
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 608 LQDQLDEEMEAKQNLERHVSTLNIQLSDSKKKLQDFASTIEVMEEGKKRL--------QKEMEGLSQQYEEKAAAYDKLE 679
Cdd:PRK03918 600 FYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELeelekkysEEEYEELREEYLELSRELAGLR 679
|
570 580 590
....*....|....*....|....*....|....*..
gi 568994733 680 KTKNRLQQELDDLVVDLDNQRQLVSNLEKKQKKFDQL 716
Cdd:PRK03918 680 AELEELEKRREEIKKTLEKLKEELEEREKAKKELEKL 716
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
100-855 |
5.81e-10 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 63.91 E-value: 5.81e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 100 KVKPLLQVTRQEEEMQAKEEEMQKIKERQQKAETELKELEQ---KHTQLAEEKTLLQEQLQAETELYAEAEEMRVRLAAK 176
Cdd:TIGR00606 174 KFDEIFSATRYIKALETLRQVRQTQGQKVQEHQMELKYLKQykeKACEIRDQITSKEAQLESSREIVKSYENELDPLKNR 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 177 KQELEEIL---HEMEARLEEEEDRGQQLQAERKKMAQQMldleeqLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQ 253
Cdd:TIGR00606 254 LKEIEHNLskiMKLDNEIKALKSRKKQMEKDNSELELKM------EKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 254 NSKLSKERKLLEERVSDLTTNLAEEEEKAKNLTKLKSKHESMISELEVRLK---------KEEKSRQELEKLKRKLEGDA 324
Cdd:TIGR00606 328 LEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLEldgfergpfSERQIKNFHTLVIERQEDEA 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 325 -------SDFHEQIADLQAQIAELKMQLAKKEEELQAALARLDEEIAQKNNALKKIRELEGHISDL---QEDLDSERAAR 394
Cdd:TIGR00606 408 ktaaqlcADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRIlelDQELRKAEREL 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 395 NKAEKQK--RDLGEELEALKTELEDTLDSTATQQELRAKREQEVTVLKKALdEETRSHEAQVQEMRQKHTQAVEELTEQL 472
Cdd:TIGR00606 488 SKAEKNSltETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQME-MLTKDKMDKDEQIRKIKSRHSDELTSLL 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 473 EQFKRAKA------NLDKSKQTLEKENADLAGELRVLGQAKQEVEHKKKKLEVQLQDLQSKCSDGERARAELSDkVHKLQ 546
Cdd:TIGR00606 567 GYFPNKKQledwlhSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESD-LERLK 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 547 NEVESVTGMLNEAEGKAIKLAKDVASLGSQLQDTQELLQEETRQKLNVSTKLRQLEDERNSLQDQLDEEMEAKQNLERHV 626
Cdd:TIGR00606 646 EEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRR 725
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 627 STLNIQLSDSKKKLQDFASTIEVMEEGKKRLQKEMEGLSQQYEEKaaayDKLEKTKNRLQQELDDLVVDLDNQRQLVSNL 706
Cdd:TIGR00606 726 DEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQ----ETLLGTIMPEEESAKVCLTDVTIMERFQMEL 801
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 707 EKKQKKFDQLLAEEKNISSKYADERDRAEAEarEKETKALSLARALEEALEAKEELERTNKMLKAEMEDLVSSKDDVGKN 786
Cdd:TIGR00606 802 KDVERKIAQQAAKLQGSDLDRTVQQVNQEKQ--EKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTN 879
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568994733 787 VHEleksKRALETQMEEMKTQLEELEDELQATEDAKLRLEVNMQALKGQFERDLQARDEQNEEKRRQLQ 855
Cdd:TIGR00606 880 LQR----RQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVN 944
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
428-947 |
6.14e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 63.91 E-value: 6.14e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 428 LRAKREQEVTVLKKALDEETRSHEAQVQEMRQKHTQAVEELTEQLEQFKRAKANLDKSKQTLEKENadlagelrvlgQAK 507
Cdd:PRK02224 182 LSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHE-----------ERR 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 508 QEVEhkkkKLEVQLQDLQSKCSDGERARAELSDKVHKLQNEVESVTGMLNEAEGKAIKLAKDVASLGSQLQDTQELLQEE 587
Cdd:PRK02224 251 EELE----TLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEEL 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 588 TRQKLNVSTKLRQLEDERNSLQDQLDEEMEAKQNLERHVSTLNIQLSDSKKKLQDFASTIEVMEEGKKRLQKEMEGLSQQ 667
Cdd:PRK02224 327 RDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVD 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 668 YEEKAAAYDKLEKTKNRLQQELDDLVVDLdnqrqlvSNLEKKQKKFDQLLAEEKNIS-------SKYADERDRAEaEARE 740
Cdd:PRK02224 407 LGNAEDFLEELREERDELREREAELEATL-------RTARERVEEAEALLEAGKCPEcgqpvegSPHVETIEEDR-ERVE 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 741 KETKALSLARALEEALEAKEELERTNKMLKAEMEDLVSSKDDVGKNVHELEKSKRALETQMEEMKTQLEELEDELQATED 820
Cdd:PRK02224 479 ELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKRE 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 821 AKLRLEVNMQALK---GQFERDLQARDEQNE--EKRRQLQRQLHEYETELEDERKQRALAAAAKKKLEGDLKDL-ELQAD 894
Cdd:PRK02224 559 AAAEAEEEAEEAReevAELNSKLAELKERIEslERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKrERKRE 638
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 568994733 895 SAIKGREEAIKQLRKLQAQMKDFQR----ELDDARASRDEIFATSKENEKKAKSLEA 947
Cdd:PRK02224 639 LEAEFDEARIEEAREDKERAEEYLEqveeKLDELREERDDLQAEIGAVENELEELEE 695
|
|
| MYSc_Myh2_insects_mollusks |
cd14911 |
class II myosin heavy chain 2, motor domain; Myosin motor domain of type IIa skeletal muscle ... |
1-31 |
6.15e-10 |
|
class II myosin heavy chain 2, motor domain; Myosin motor domain of type IIa skeletal muscle myosin heavy chain 2 (also called MYH2A, MYHSA2, MyHC-IIa, MYHas8, MyHC-2A) in insects and mollusks. This gene encodes a member of the class II or conventional myosin heavy chains, and functions in skeletal muscle contraction. Mutations in this gene results in inclusion body myopathy-3 and familial congenital myopathy. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276876 [Multi-domain] Cd Length: 674 Bit Score: 63.46 E-value: 6.15e-10
10 20 30
....*....|....*....|....*....|.
gi 568994733 1 MDGKQACILMIKALELDPNLYRIGQSKIFFR 31
Cdd:cd14911 644 MDGKKACEKMIQALELDSNLYRVGQSKIFFR 674
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
109-742 |
1.22e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 63.24 E-value: 1.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 109 RQEEEMQAKEEEMQKIKERQQKAETELKELEQKHTQLAEEKTLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEME 188
Cdd:PTZ00121 1140 RKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARK 1219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 189 ARLEEEEDRGQQLQAERKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLED----DILVMDDQNSKLSKERKLL 264
Cdd:PTZ00121 1220 AEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEarkaDELKKAEEKKKADEAKKAE 1299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 265 EERVSDLTTNLAEEEEKAKNLTK-----------LKSKHESMISELEVRLKKEEKSRQELEKLKRKLEGDASDFHEqiAD 333
Cdd:PTZ00121 1300 EKKKADEAKKKAEEAKKADEAKKkaeeakkkadaAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEE--AK 1377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 334 LQAQIAELKMQLAKKEEELQaalaRLDEEIAQKNNALKKIRELEGHISDLQEDLDSERaarnKAEKQKRDLGEELEAlkT 413
Cdd:PTZ00121 1378 KKADAAKKKAEEKKKADEAK----KKAEEDKKKADELKKAAAAKKKADEAKKKAEEKK----KADEAKKKAEEAKKA--D 1447
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 414 ELEDTLDSTATQQELRAKREQEvtvlKKALDEETRSHEAQVQEMRQKHTQAVEELTEQLEQFKRAKANLDKSKQTLEKEN 493
Cdd:PTZ00121 1448 EAKKKAEEAKKAEEAKKKAEEA----KKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKK 1523
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 494 ADLAGELRVLGQAKQEVEHKKKKLEVQLQDLQSKCSDGERARAELSDKVHKLQNEVESVTGMLNEAEGKAIKLAKDVASL 573
Cdd:PTZ00121 1524 ADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEE 1603
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 574 GSQLQDTQELLQEETRQKLNVSTKLRQLEDERNSLQDQLDEEMEAKQNLERHVSTLNIQLSDSKKKLQDFASTIEVMEEG 653
Cdd:PTZ00121 1604 EKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKA 1683
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 654 KKRLQKEMEGLSQQYEEKAAAYD---KLEKTKNRLQQELDDLVVDLDNQRQLVSNLEKKQKKFDQLLAEE---KNISSKY 727
Cdd:PTZ00121 1684 EEDEKKAAEALKKEAEEAKKAEElkkKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEeekKKIAHLK 1763
|
650
....*....|....*
gi 568994733 728 ADERDRAEAEAREKE 742
Cdd:PTZ00121 1764 KEEEKKAEEIRKEKE 1778
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
88-656 |
1.38e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 62.85 E-value: 1.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 88 KLRNWQWWRLFTKVKPLLQVTRQEEEMQAKEEEMQKIKERQQKAET-ELKELEQKHT-----QLAEEKtllqeqlQAETE 161
Cdd:PTZ00121 1247 EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAdEAKKAEEKKKadeakKKAEEA-------KKADE 1319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 162 LYAEAEEMRVRLAAKKQELEEILHEMEARLEEEEDRGQQLQAERKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKiK 241
Cdd:PTZ00121 1320 AKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAK-K 1398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 242 KLEDDILVMDDQNSKLSKERKLLEERVSDLTTNLAEE----EEKAKNLTKLKSKHESMISELEVRLKKEEKSRQELEKLK 317
Cdd:PTZ00121 1399 KAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEakkkAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK 1478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 318 RKLEGDASDFHEQIADLQAQIAELKM--QLAKKEEELQAALARLDEEIAQKNNALKKIRELEGhisdlQEDLDSERAARN 395
Cdd:PTZ00121 1479 AEEAKKADEAKKKAEEAKKKADEAKKaaEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKK-----AEEKKKADELKK 1553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 396 KAEKQKRDLGEELEALKTELEDTLDSTATQQELRAKREQEVTVLKKALDEETRSHEAQVQEMRQKHTQA-----VEELTE 470
Cdd:PTZ00121 1554 AEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAeelkkAEEEKK 1633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 471 QLEQFKRAKANLDKSKQTLEKENADlaGELRVLGQAKQEVEHKKKKLEVQlqdlqsKCSDGERARAELSDKVHKLQNEVE 550
Cdd:PTZ00121 1634 KVEQLKKKEAEEKKKAEELKKAEEE--NKIKAAEEAKKAEEDKKKAEEAK------KAEEDEKKAAEALKKEAEEAKKAE 1705
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 551 SVTGMLNEAEGKAIKLAKDVASLGSQLQDTQELLQEETRQklnvSTKLRQLEDERNSLQDQLDEEMEAKQNLERHVSTL- 629
Cdd:PTZ00121 1706 ELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKK----AEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVi 1781
|
570 580 590
....*....|....*....|....*....|....*
gi 568994733 630 --------NIQLSDSKKKLQDFASTIEVMEEGKKR 656
Cdd:PTZ00121 1782 eeeldeedEKRRMEVDKKIKDIFDNFANIIEGGKE 1816
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
237-686 |
1.98e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 62.06 E-value: 1.98e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 237 EAKIKKLEDDILVMDDQNSKLSKERK-----LLEERVSDLTTNLAEEEEKAKNLTKLKSKHESMISELEVRLKK-EEKSR 310
Cdd:pfam15921 230 DTEISYLKGRIFPVEDQLEALKSESQnkielLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIiQEQAR 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 311 QELEKLKRKLegdaSDFHEQIADLQAQIAELKMQLAKKEEELQAALARLDEEIAQKNNALKKIRELEGHISDLQEDLDSE 390
Cdd:pfam15921 310 NQNSMYMRQL----SDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLAD 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 391 RAARNKAEKQKRDLGEELEALKTELEDTLDSTATQQELRAKREQEVTVLKKALDEETRSHEAQVQEMRQKHTQAVEE--- 467
Cdd:pfam15921 386 LHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKvss 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 468 LTEQLEQFKR-----------AKANLDKSKQTLEKENADLAGELRVLGQAKQEVEHKKKKLEVQLQDLQSKCSDGERAR- 535
Cdd:pfam15921 466 LTAQLESTKEmlrkvveeltaKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRn 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 536 ------------AELSDKVHKLQNEVESVTGMLNEAEGKAIKLAKDVASLGSQLQDTQELLQEETRQKLNVSTKLRQLED 603
Cdd:pfam15921 546 vqtecealklqmAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEA 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 604 -------ERNSLQDQLDEEMEAKQNLERHVSTLNIQLSDSKKKLQDFASTIEVMEEGKKRLQKEMEGLSQQYE-EKAAAY 675
Cdd:pfam15921 626 rvsdlelEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKmQLKSAQ 705
|
490
....*....|.
gi 568994733 676 DKLEKTKNRLQ 686
Cdd:pfam15921 706 SELEQTRNTLK 716
|
|
| MYSc_Myh19 |
cd15896 |
class II myosin heavy chain19, motor domain; Myosin motor domain of muscle myosin heavy chain ... |
1-31 |
2.34e-09 |
|
class II myosin heavy chain19, motor domain; Myosin motor domain of muscle myosin heavy chain 19. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276899 [Multi-domain] Cd Length: 675 Bit Score: 61.62 E-value: 2.34e-09
10 20 30
....*....|....*....|....*....|.
gi 568994733 1 MDGKQACILMIKALELDPNLYRIGQSKIFFR 31
Cdd:cd15896 645 MDGKQACVLMIKSLELDPNLYRIGQSKVFFR 675
|
|
| MYSc_class_II |
cd01377 |
class II myosins, motor domain; Myosin motor domain in class II myosins. Class II myosins, ... |
1-31 |
2.41e-09 |
|
class II myosins, motor domain; Myosin motor domain in class II myosins. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. Thus, myosin II has two heads. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276951 [Multi-domain] Cd Length: 662 Bit Score: 61.71 E-value: 2.41e-09
10 20 30
....*....|....*....|....*....|.
gi 568994733 1 MDGKQACILMIKALELDPNLYRIGQSKIFFR 31
Cdd:cd01377 632 DDGKAACEKILKALQLDPELYRIGNTKVFFK 662
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
296-744 |
3.91e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 61.08 E-value: 3.91e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 296 ISELEVRLKKEEKSRQELEKLKRKLEGDASdfHEQIADLQAQIAELKMQLAKKEEELQAALARLDEEIAQKNNALKKIRE 375
Cdd:COG4913 257 IRELAERYAAARERLAELEYLRAALRLWFA--QRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRG 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 376 LEG-HISDLQEDLDSERAARNKAEKQKRDLGEELEALKTELEDTLDSTATQQELRAKREQEVTVLKKALDEETRSHEAQV 454
Cdd:COG4913 335 NGGdRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAAL 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 455 QEMRQKHtqavEELTEQLEQFKRAKANLDKS--------KQTLEKENADL--AGEL---------------RVLG----- 504
Cdd:COG4913 415 RDLRREL----RELEAEIASLERRKSNIPARllalrdalAEALGLDEAELpfVGELievrpeeerwrgaieRVLGgfalt 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 505 ---------QAKQEVEHKKKKLEVQLQDLQSKCSDGERARAELSDKVHKLQNE--------------------VESVTGM 555
Cdd:COG4913 491 llvppehyaAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDPDSLAGKLDFKphpfrawleaelgrrfdyvcVDSPEEL 570
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 556 lnEAEGKAIKLAKDVASLGS--QLQDTQELLQE-----ETRQKLNV-STKLRQLEDERNSLQDQLDEEMEAKQNLERHVS 627
Cdd:COG4913 571 --RRHPRAITRAGQVKGNGTrhEKDDRRRIRSRyvlgfDNRAKLAAlEAELAELEEELAEAEERLEALEAELDALQERRE 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 628 TLN---------IQLSDSKKKLQDFASTIEVMEEGK---KRLQKEMEGLSQQYEEKAAAYDKLEKTKNRLQQELDDLVVD 695
Cdd:COG4913 649 ALQrlaeyswdeIDVASAEREIAELEAELERLDASSddlAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEE 728
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 696 LDNQRQLVSNLEKKQKKFDQLLAEE-----------KNISSKYADERDRAEAEAREKETK 744
Cdd:COG4913 729 LDELQDRLEAAEDLARLELRALLEErfaaalgdaveRELRENLEERIDALRARLNRAEEE 788
|
|
| MYSc_Myh9 |
cd14919 |
class II myosin heavy chain 9, motor domain; Myosin motor domain of non-muscle myosin heavy ... |
1-31 |
9.84e-09 |
|
class II myosin heavy chain 9, motor domain; Myosin motor domain of non-muscle myosin heavy chain 9 (also called NMMHCA, NMHC-II-A, MHA, FTNS, EPSTS, and DFNA17). Myosin is a hexameric protein composed of a pair of myosin heavy chains (MYH) and two pairs of nonidentical light chains. The encoded protein is a myosin IIA heavy chain that contains an IQ domain and a myosin head-like domain which is involved in several important functions, including cytokinesis, cell motility and maintenance of cell shape. Defects in this gene have been associated with non-syndromic sensorineural deafness autosomal dominant type 17, Epstein syndrome, Alport syndrome with macrothrombocytopenia, Sebastian syndrome, Fechtner syndrome and macrothrombocytopenia with progressive sensorineural deafness. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.
Pssm-ID: 276883 [Multi-domain] Cd Length: 670 Bit Score: 59.72 E-value: 9.84e-09
10 20 30
....*....|....*....|....*....|.
gi 568994733 1 MDGKQACILMIKALELDPNLYRIGQSKIFFR 31
Cdd:cd14919 640 MDGKQACVLMIKALELDSNLYRIGQSKVFFR 670
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
239-711 |
1.43e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 59.26 E-value: 1.43e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 239 KIKKLEDDILVMDDQNSKLSKERKLLEERVSDLTTNLAEEEEKAKNLTKLKSKHESMISELEVRLKKEEKSRQELEKLKR 318
Cdd:TIGR04523 212 KNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLN 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 319 KLEGDASDFHEQIAdlQAQIAELKMQLAKKEEELQAALARLDEEIAQKNNALKKIRELEGHISDL-------QEDLDSER 391
Cdd:TIGR04523 292 QLKSEISDLNNQKE--QDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSesensekQRELEEKQ 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 392 AARNKAEKQKRDLGEELEALKTELEDTLDSTATQQELRAKREQEVTVLKKALDEETRSHEaQVQEMRQKHTQAVEELTEQ 471
Cdd:TIGR04523 370 NEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIE-RLKETIIKNNSEIKDLTNQ 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 472 LEQFKRAKANLDKSKQTLEKENADLAGELRVLGQAKQEVEHKKKKLEVQLQDLQSKCSDGERARAELSDKVHKLQNEVES 551
Cdd:TIGR04523 449 DSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEK 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 552 VTGMLNEAEGKAIKLAKDVASLGSQLqdtqellqeetrqklnvstKLRQLEDERNSLQDQLDEEMEAKQNLERHVSTLNI 631
Cdd:TIGR04523 529 LESEKKEKESKISDLEDELNKDDFEL-------------------KKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQE 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 632 QLSDSKKKLQDFASTIEVMEEGKKRLQKEMEGLSQQYEEKAAAYDKLEKTKNRLQQELDDLVVDLDNQRQLVSNLEKKQK 711
Cdd:TIGR04523 590 LIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIK 669
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
772-1193 |
1.58e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 59.28 E-value: 1.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 772 EMEDLVSSKDDVGKNVHELEKSKRALETQMEEMKTQLEELEDELQATEDAKLRLEVNMQALKGQFErDLQARDEQNEEKR 851
Cdd:PRK02224 252 ELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARRE-ELEDRDEELRDRL 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 852 RQLQRQLHEYETELEDERKQRALAAAAKKKLEGDLKDLELQADSA---IKGREEAI----KQLRKLQAQMKDFQRELDDA 924
Cdd:PRK02224 331 EECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAreaVEDRREEIeeleEEIEELRERFGDAPVDLGNA 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 925 RASRDEIFATSKENEKKAKSLEADLMQLQEDLAAAERARKQADLEKEELAEELASSLSGRNTLQDEKRRLEARIAQLEEE 1004
Cdd:PRK02224 411 EDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEE 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1005 LEEEQGNMEAMSD------RVRKATLQAEQLSNELATERSTAQKNESARQQLERQNKELRSKLQEVEGAVKA------KL 1072
Cdd:PRK02224 491 VEEVEERLERAEDlveaedRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEaeeeaeEA 570
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1073 KSTVAALEAKIAQLEEQVEQEAR--EKQAATKSLKQKDKKLKEvllQVEDERKMAEQYKEQAEKGNTKVKQLKRQ----- 1145
Cdd:PRK02224 571 REEVAELNSKLAELKERIESLERirTLLAAIADAEDEIERLRE---KREALAELNDERRERLAEKRERKRELEAEfdear 647
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 568994733 1146 LEEAEEESQRINANRRKLQRELDEATESNEAMGREVNALKSKLRRGNE 1193
Cdd:PRK02224 648 IEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEE 695
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
335-552 |
1.76e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 58.24 E-value: 1.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 335 QAQIAELKMQLAKKEEELQAALARLDEEIAQKNNALKKIRELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 414
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 415 LEDTLDSTATQ--QELRAKREQEVTVLKKALDeetrshEAQVQEMRQKHTQAVEELTEQLEQFKRAKANLDKSKQTLEKE 492
Cdd:COG4942 99 LEAQKEELAELlrALYRLGRQPPLALLLSPED------FLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 493 NADLAGELRVLGQAKQEVEHKKKKLEVQLQDLQSKCSDGERARAELSDKVHKLQNEVESV 552
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
|
| MYSc |
smart00242 |
Myosin. Large ATPases; ATPase; molecular motor. Muscle contraction consists of a cyclical ... |
1-43 |
2.04e-08 |
|
Myosin. Large ATPases; ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Pssm-ID: 214580 [Multi-domain] Cd Length: 677 Bit Score: 58.71 E-value: 2.04e-08
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 568994733 1 MDGKQACILMIKALELDPNLYRIGQSKIFFRTGVLAHLEEERD 43
Cdd:smart00242 635 GDAKKACEALLQSLGLDEDEYQLGKTKVFLRPGQLAELEELRE 677
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
238-1065 |
2.70e-08 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 58.52 E-value: 2.70e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 238 AKIKKLEDDILVMDDQNSKLSKERKLLEERVSDLTTNLAEEeekaknLTKLKSKHESMISELEVRLKKEEKSRQELEKLK 317
Cdd:TIGR00606 262 SKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQ------LNDLYHNHQRTVREKERELVDCQRELEKLNKER 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 318 RKLEGDASDFHEQIADLQAQIAELKMQLAKKEEELQAALARLDeeiaqknnalkkireleghISDLQEDLDSERAARNKA 397
Cdd:TIGR00606 336 RLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLE-------------------LDGFERGPFSERQIKNFH 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 398 EKQKRDLGEELEALKTELEDTLDSTATQQELRAKREQEVTVLKKALDEETRSHEAQVQEMR------QKHTQAVEELTEQ 471
Cdd:TIGR00606 397 TLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKfvikelQQLEGSSDRILEL 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 472 LEQFKRAKANLDKSKQ------------TLEKENADLAGELRVLGQAKQEVEHKKKKLEVQLQDLQSKCSDGERAR---- 535
Cdd:TIGR00606 477 DQELRKAERELSKAEKnsltetlkkevkSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRkiks 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 536 ----------------AELSDKVHKLQNEVesvtgmlNEAEGKAIKLAKDVASLGSQLQDTQELLQEETRQKLNVSTKL- 598
Cdd:TIGR00606 557 rhsdeltsllgyfpnkKQLEDWLHSKSKEI-------NQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLf 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 599 -----RQLEDERNSLQDQLDEEMEAKQNLERHVSTLNIQLSDSKKKLQDFASTIEVMEEGKKRLQKEMEGLSQQYEEKAA 673
Cdd:TIGR00606 630 dvcgsQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPD 709
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 674 AYDKLEKTKNRLQQELDDLVVDLDNQRqlvSNLEKKQKKFDQLLAEEKNISSKYADERDRAEAEAREKET--KALSLARA 751
Cdd:TIGR00606 710 KLKSTESELKKKEKRRDEMLGLAPGRQ---SIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTimPEEESAKV 786
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 752 LEEALEAKEELERTNKMLKAEMEDLVSSKD--DVGKNVHELEKSKRALETQMEEMKTQLEELEDELQATEDAKLRLEVNM 829
Cdd:TIGR00606 787 CLTDVTIMERFQMELKDVERKIAQQAAKLQgsDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKT 866
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 830 QALKGQferdlQARDEQNEEKRRQLQRQLHEYETELEDERKQRALAAAAKKKLEGDLKDLELQADSAIKGREEAIKqlrK 909
Cdd:TIGR00606 867 NELKSE-----KLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNK---K 938
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 910 LQAQMKDFQRELDDARASRDEIFATSKEN-EKKAKSLEADLMQLQEDLAAAERARKQADLEKEELAEELASSLSGRNTLQ 988
Cdd:TIGR00606 939 AQDKVNDIKEKVKNIHGYMKDIENKIQDGkDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQ 1018
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568994733 989 DEKRRLEARIAQLEEELEEEQGNMEAMSDRVRKATLQAEQLSNELATERSTAQKNESARQQLERQNKELRSKLQEVE 1065
Cdd:TIGR00606 1019 DNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQ 1095
|
|
| MYSc_Myh14_mammals |
cd14930 |
class II myosin heavy chain 14 motor domain; Myosin motor domain of non-muscle myosin heavy ... |
1-31 |
3.03e-08 |
|
class II myosin heavy chain 14 motor domain; Myosin motor domain of non-muscle myosin heavy chain 14 (also called FLJ13881, KIAA2034, MHC16, MYH17). Its members include mammals, chickens, and turtles. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Some of the data used for this classification were produced by the CyMoBase team at the Max-Planck-Institute for Biophysical Chemistry. The sequence names are composed of the species abbreviation followed by the protein abbreviation and optional protein classifier and variant designations.
Pssm-ID: 276893 [Multi-domain] Cd Length: 670 Bit Score: 58.18 E-value: 3.03e-08
10 20 30
....*....|....*....|....*....|.
gi 568994733 1 MDGKQACILMIKALELDPNLYRIGQSKIFFR 31
Cdd:cd14930 640 MDGKQACEKMIQALELDPNLYRVGQSKIFFR 670
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
452-1194 |
3.35e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.16 E-value: 3.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 452 AQVQEMRQKHTQAVEELTEQLEQFKRAKANLDKSKQTLEK--ENADLAGELRVLGQAKQEVE-----HKKKKLEVQLQDL 524
Cdd:TIGR02169 163 AGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERlrREREKAERYQALLKEKREYEgyellKEKEALERQKEAI 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 525 QSKCSDGERARAELSDKVHKLQNEVESVTGMLNEAEGKAIKLAKDvaslgsqlqdtqellqeetrQKLNVSTKLRQLEDE 604
Cdd:TIGR02169 243 ERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEE--------------------EQLRVKEKIGELEAE 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 605 RNSLQDQLDEEMEAKQNLERHVSTLNIQLSDSKKKLQDFASTIEVMEEGKKRLQKEMEGLSQQYEEKAAAYDKLEKTKNR 684
Cdd:TIGR02169 303 IASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 685 LQQELDDLVVDLDnqrQLVSNLEKKQKKFDQLLAEEKNISSKYADerdrAEAEAREKETKALSLARALEEALEAKEELER 764
Cdd:TIGR02169 383 TRDELKDYREKLE---KLKREINELKRELDRLQEELQRLSEELAD----LNAAIAGIEAKINELEEEKEDKALEIKKQEW 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 765 TNKMLKAEMEDLVSSKDDVGKNVHELEKSKRALETQMEEMKTQLEELEDELQATEDAKLRLEVNMQALKGQF-------- 836
Cdd:TIGR02169 456 KLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVaqlgsvge 535
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 837 -------------------ERDLQARDEQNEEKRRQLQRQlheyeTELEDERKQRALAAAAKKKLEG------DLKDLEL 891
Cdd:TIGR02169 536 ryataievaagnrlnnvvvEDDAVAKEAIELLKRRKAGRA-----TFLPLNKMRDERRDLSILSEDGvigfavDLVEFDP 610
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 892 QADSAIK------GREEAIKQLRKL--QAQMKDFQRELDDARASRDEIFATSKENEKKAKSLEADLMQLQEDLAAAERAR 963
Cdd:TIGR02169 611 KYEPAFKyvfgdtLVVEDIEAARRLmgKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKREL 690
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 964 kqadlekeelaeelasslsgrNTLQDEKRRLEARIAQLEEELEEEQGNMEAMSDRVRKATLQAEQLSNELATERSTAQKN 1043
Cdd:TIGR02169 691 ---------------------SSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSL 749
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1044 ESARQQLERQNKELRSKLQEVEgAVKAKLKSTVAALEAKIAQLE--------EQVEQEAREKQAATKSLKQKDKKLKEVL 1115
Cdd:TIGR02169 750 EQEIENVKSELKELEARIEELE-EDLHKLEEALNDLEARLSHSRipeiqaelSKLEEEVSRIEARLREIEQKLNRLTLEK 828
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1116 LQVEDERKMAEQY----KEQAEKGNTKVKQLKRQLEEAEEESQRINANRRKLQRELDEATESNEAMGREVNALKSKLRRG 1191
Cdd:TIGR02169 829 EYLEKEIQELQEQridlKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL 908
|
...
gi 568994733 1192 NEA 1194
Cdd:TIGR02169 909 EAQ 911
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
310-871 |
4.02e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.00 E-value: 4.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 310 RQELEKLKRKLE--GDASDFHEQIADLQAQIAELKMQLA--------KKEEELQAALARLDEEIAQknnALKKIRELEGH 379
Cdd:COG4913 241 HEALEDAREQIEllEPIRELAERYAAARERLAELEYLRAalrlwfaqRRLELLEAELEELRAELAR---LEAELERLEAR 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 380 ISDLQEDLDSERAARNKAEkqkrdlGEELEALKTELEDTLDSTATQQELRAKREQEVtvlkKALDEETRSHEAQVQEMRQ 459
Cdd:COG4913 318 LDALREELDELEAQIRGNG------GDRLEQLEREIERLERELEERERRRARLEALL----AALGLPLPASAEEFAALRA 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 460 KHTQAVEELTEQLEQFKRAKANLDKSKQTLEKENADLAGELRVLgqakqevEHKKKKLEVQLQDLQskcsdgERARAELS 539
Cdd:COG4913 388 EAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASL-------ERRKSNIPARLLALR------DALAEALG 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 540 DKVHKL----------------QNEVESVTG-----MLNEAEgkaikLAKDVASLGSQLQDTQEL--------LQEETRQ 590
Cdd:COG4913 455 LDEAELpfvgelievrpeeerwRGAIERVLGgfaltLLVPPE-----HYAAALRWVNRLHLRGRLvyervrtgLPDPERP 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 591 KLNVSTKLRQLEDERNSLQDQLDEEMEAKQNLERhVSTLNiQLSDskkklQDFASTIEVM-EEGKKRLQKEMEG-LSQQY 668
Cdd:COG4913 530 RLDPDSLAGKLDFKPHPFRAWLEAELGRRFDYVC-VDSPE-ELRR-----HPRAITRAGQvKGNGTRHEKDDRRrIRSRY 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 669 EEKAAAYDKLEktknRLQQELDDLVVDLDNQRQLVSNLEKKQKKFDQLLAEEKNISSKYADERDRAEAEAR----EKETK 744
Cdd:COG4913 603 VLGFDNRAKLA----ALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREiaelEAELE 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 745 ALSLARALEEAleakeelertnkmLKAEMEDLVSSKDDVGKNVHELEKSKRALETQMEEMKTQLEELEDELQATEDAKLR 824
Cdd:COG4913 679 RLDASSDDLAA-------------LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARL 745
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 568994733 825 LEVnmQALKGQFERDLQARDEQneEKRRQLQRQLHEYETELEDERKQ 871
Cdd:COG4913 746 ELR--ALLEERFAAALGDAVER--ELRENLEERIDALRARLNRAEEE 788
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
698-1217 |
1.94e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.92 E-value: 1.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 698 NQRQLVSNLEKKQKKFDQLLAEEKNISSKYADERDRAEAEAREKETKALSLARALEEALEAKEELERTNKmLKAEMEDLV 777
Cdd:PTZ00121 1250 NNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADE-AKKKAEEAK 1328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 778 SSKDDVGKNVHELEKSKRALETQMEEMKTQLEELEDELQATEDAKLRLEVNMQALKGQFERDLQArdEQNEEKRRQLQRQ 857
Cdd:PTZ00121 1329 KKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKA--DEAKKKAEEDKKK 1406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 858 LHEYETELEDERKQRALAAAAKKKLEGDlkDLELQADSAIKGREEAIKQLRKLQAQ-MKDFQRELDDARASRDEIFATSK 936
Cdd:PTZ00121 1407 ADELKKAAAAKKKADEAKKKAEEKKKAD--EAKKKAEEAKKADEAKKKAEEAKKAEeAKKKAEEAKKADEAKKKAEEAKK 1484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 937 ENEKKAKSLEADlmQLQEDLAAAERARKQADLEKEELAEELASSLsgrNTLQDEKRRLEARIAQLEEEleeeqgnmeamS 1016
Cdd:PTZ00121 1485 ADEAKKKAEEAK--KKADEAKKAAEAKKKADEAKKAEEAKKADEA---KKAEEAKKADEAKKAEEKKK-----------A 1548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1017 DRVRKAtlqaeqlsnELATERSTAQKNESARQQLERQNKELRsKLQEVEGAVKAKLKSTVAALEAKIAQLEEQVEQEARE 1096
Cdd:PTZ00121 1549 DELKKA---------EELKKAEEKKKAEEAKKAEEDKNMALR-KAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEA 1618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1097 KQAAtkslkqkdkklkEVLLQVEDERKMAEQYKEQAEKGNTKVKQLKRQLEEAEEESQRINANRRKLQRELDEATESNEA 1176
Cdd:PTZ00121 1619 KIKA------------EELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEED 1686
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 568994733 1177 MGREVNALKSKLRRGNEASFVPSRRAGGRRVIENTDGSEEE 1217
Cdd:PTZ00121 1687 EKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEE 1727
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
345-1171 |
2.10e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 55.61 E-value: 2.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 345 LAKKEEELQAALARLDEEIAQKNNALKKIRELEGHISDLQEDLDSERA---ARNKAEKQKRDLgEELEALKTELEDTLDS 421
Cdd:pfam12128 188 MHSKEGKFRDVKSMIVAILEDDGVVPPKSRLNRQQVEHWIRDIQAIAGimkIRPEFTKLQQEF-NTLESAELRLSHLHFG 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 422 TATQQELRAKREQEVTVLKKALDEETRSHEAQVQEMRQKHTQAVEELTEQLEQFKRAKANLDKSKQTLEKENADlagelr 501
Cdd:pfam12128 267 YKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDADIE------ 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 502 vlgQAKQEVEhkkkklevQLQDLQSKCSDGERARAELSDKVHKLQNEVESVTGMLNEaegkaiKLAKDVASLGSQLQDTQ 581
Cdd:pfam12128 341 ---TAAADQE--------QLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKE------QNNRDIAGIKDKLAKIR 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 582 EllqEETRQKLNVSTKLRQLEDE-RNSLQDQLDEEMEAKQNLERHVSTLNIQL------SDSKKKLQDFASTIEVMEE-- 652
Cdd:pfam12128 404 E---ARDRQLAVAEDDLQALESElREQLEAGKLEFNEEEYRLKSRLGELKLRLnqatatPELLLQLENFDERIERAREeq 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 653 -----GKKRLQKEMEGLSQQYEEKAAAYDKLEKTKNRLQQELDDLVVDLDNQR-QLVSNLEKKQKKFDQLLAeeKNISSK 726
Cdd:pfam12128 481 eaanaEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAgTLLHFLRKEAPDWEQSIG--KVISPE 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 727 YADERDRAEAEAREKETKALSL-ARALEEALEAKEELERTNKMLKAEMEDLVSSKDDVGKNVHELEKSKRALETQMEEMK 805
Cdd:pfam12128 559 LLHRTDLDPEVWDGSVGGELNLyGVKLDLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKAS 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 806 TQLEELEDELQATEDAKLRLEVNMQALKGQFERDLQARDEQNEEKRRQLQRQLHEYETEL--------EDERKQRALAAA 877
Cdd:pfam12128 639 REETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHqawleeqkEQKREARTEKQA 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 878 AKKKLEGDLKDLELQADSAIKGREEAIKqlrklqAQMKDFQRELDDARASRDEIFATSKENEKKAKSLEADLMQLQEDLA 957
Cdd:pfam12128 719 YWQVVEGALDAQLALLKAAIAARRSGAK------AELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQ 792
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 958 AAERARKQADLEKEELAEELASSLSGRNT----LQDEKRRLEARIAQLEEELEEEQGNMEAMSDRVRKATLQAEQLSNEL 1033
Cdd:pfam12128 793 EVLRYFDWYQETWLQRRPRLATQLSNIERaiseLQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKL 872
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1034 ATERSTAQKNESARQQLER--QNKELRSKLQEVEGAVKAKLKSTVAALEAKIAQLEEQVEQEAREKQAATKSLKQKDKKL 1111
Cdd:pfam12128 873 ATLKEDANSEQAQGSIGERlaQLEDLKLKRDYLSESVKKYVEHFKNVIADHSGSGLAETWESLREEDHYQNDKGIRLLDY 952
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568994733 1112 KEVLLQVEDERKMAEQYKEQA--EKGNTKVKQLKRQLEEAEEESQRINANRRKLQRELDEAT 1171
Cdd:pfam12128 953 RKLVPYLEQWFDVRVPQSIMVlrEQVSILGVDLTEFYDVLADFDRRIASFSRELQREVGEEA 1014
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
199-735 |
2.30e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.31 E-value: 2.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 199 QQLQAERKKMAQQMLDLEEQLEEEEAAR-QKLQLEKVTAEAKIKKLEDDILVMDDQNSKLSKERKLLEERVSDLTTNLAE 277
Cdd:COG4913 255 EPIRELAERYAAARERLAELEYLRAALRlWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRG 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 278 EeeKAKNLTKLKSKHESMISELEVRLKKEEKSRQELEKLKRKLEGDASDFHEQIADLQAQIAELKMQLAKKEEELQAALA 357
Cdd:COG4913 335 N--GGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEA 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 358 RLDEEIAQKNNALKKIRELEGHISDLQEDLDSERAARNKAEKQKRD----LGEELEALKTELE----------------- 416
Cdd:COG4913 413 ALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEALGLDEAelpfVGELIEVRPEEERwrgaiervlggfaltll 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 417 ----------DTLDSTATQQELR-------AKREQEVTVLKKALDE--ETRSHEAQ---VQEMRQKHTQAVEELTEQLEQ 474
Cdd:COG4913 493 vppehyaaalRWVNRLHLRGRLVyervrtgLPDPERPRLDPDSLAGklDFKPHPFRawlEAELGRRFDYVCVDSPEELRR 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 475 FKRA--KANLDKSKQTL-EKENADLAGELRVLGQ----AKQEVEHKKKKLEVQLQDLQSKCSDGERARAELSDKVHKLQN 547
Cdd:COG4913 573 HPRAitRAGQVKGNGTRhEKDDRRRIRSRYVLGFdnraKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQR 652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 548 ---------EVESVTGMLNEAEGKAIKLAK---DVASLGSQLQDTQELLQEETRQKLNVSTKLRQLEDERNSLQDQLDEE 615
Cdd:COG4913 653 laeyswdeiDVASAEREIAELEAELERLDAssdDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDEL 732
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 616 MEAKQNLERHVSTLNIQLSDSKKKLQDFAstiEVMEEGKKRLQKEMEGLSqqyEEKAAAYDKLEKTKNRLQQELDDLVVD 695
Cdd:COG4913 733 QDRLEAAEDLARLELRALLEERFAAALGD---AVERELRENLEERIDALR---ARLNRAEEELERAMRAFNREWPAETAD 806
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 568994733 696 LDNQ-----------RQLVSN-LEKKQKKFDQLLAEE-----KNISSKYADERDRAE 735
Cdd:COG4913 807 LDADleslpeylallDRLEEDgLPEYEERFKELLNENsiefvADLLSKLRRAIREIK 863
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
534-747 |
2.45e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.38 E-value: 2.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 534 ARAELSDKVHKLQNEVESVTGMLNEAEGKAIKLAKDVASLGSQLQDTQELLQEETRQKLNVSTKLRQLEDERNSLQDQLD 613
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 614 EEMEAKQNLERHVSTLNIQ-----------LSDSKKKLQDFASTIEVMEEGKKRLQKEMEGLSQQYEEKAAAYDKLEKTK 682
Cdd:COG4942 101 AQKEELAELLRALYRLGRQpplalllspedFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALL 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568994733 683 NRLQQELDDLVVDLDNQRQLVSNLEKKQKKFDQLLAEEKNISSKYADERDRAEAEAREKETKALS 747
Cdd:COG4942 181 AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
718-1209 |
2.63e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.53 E-value: 2.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 718 AEEKNISSKYADERDRAEAEAREKETKALSLARALEEALEAKEELERTNKMLKAE----MEDLVSSKDDVG-------KN 786
Cdd:PTZ00121 1083 AKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEdarkAEEARKAEDAKRveiarkaED 1162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 787 VHELEKSKRALETQMEEMKTQLEELE--DELQATEDAKlRLEvnmQALKGQFERDLQARDEQNEEKRRQLQRQLHEYETE 864
Cdd:PTZ00121 1163 ARKAEEARKAEDAKKAEAARKAEEVRkaEELRKAEDAR-KAE---AARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKD 1238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 865 LEDERKQRALAAAAKKKLEGDLKDLELQADSAIKGREEAIKQLRKLQAQMKDFQRELDDARASRDEIFATSKENEKKA-- 942
Cdd:PTZ00121 1239 AEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKad 1318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 943 ----------KSLEADLMQLQEDLAAAERARKQADLEKEELAEELASSLSGRNTLQDEKRRLEARIAQLEEELEEEQGNM 1012
Cdd:PTZ00121 1319 eakkkaeeakKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKK 1398
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1013 EAMSDRVR----KATLQAEQLSNELATERSTAQKNESARQQLERQNK--ELRSKLQEVEGAVKAKLKstvaALEAKIAQL 1086
Cdd:PTZ00121 1399 KAEEDKKKadelKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKadEAKKKAEEAKKAEEAKKK----AEEAKKADE 1474
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1087 EEQVEQEAREKQAATKSLKQKDKKLKEvLLQVEDERKMAEQYKEQAEKGNTKvkqlkrQLEEAEEESQRINANRRKLQRE 1166
Cdd:PTZ00121 1475 AKKKAEEAKKADEAKKKAEEAKKKADE-AKKAAEAKKKADEAKKAEEAKKAD------EAKKAEEAKKADEAKKAEEKKK 1547
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 568994733 1167 LDEATESNEAMGREVNALKSKLRRGNEASFVPSRRAGGRRVIE 1209
Cdd:PTZ00121 1548 ADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAE 1590
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
271-501 |
3.80e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.00 E-value: 3.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 271 LTTNLAEEEEKAKNLTKLKSKHESMISELEVRLKKEEKSRQELEKLKRKLEGDASDFHEQIADLQAQIAELKMQLA---K 347
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAeleK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 348 KEEELQAALARLDEEIAQKNNALKKIreleGHISDLQEDLDSERAARnkAEKQKRDLGEELEALKTELEDTLDSTATQQE 427
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRL----GRQPPLALLLSPEDFLD--AVRRLQYLKYLAPARREQAEELRADLAELAA 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568994733 428 LRAKREQEVTVLKKALDEETRSHeAQVQEMRQKHTQAVEELTEQLEQFKRAKANLDKSKQTLEKENADLAGELR 501
Cdd:COG4942 165 LRAELEAERAELEALLAELEEER-AALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
772-1168 |
4.67e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 54.28 E-value: 4.67e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 772 EMEDLVSSKDDVGKNVHELEKSKRALETQMEEMKTQLEELEDELQATEDAKLRLEVNMQALkgqfeRDLQARDEQNEEKR 851
Cdd:PRK02224 200 EEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEI-----EDLRETIAETERER 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 852 RQLQRQLHEYETELEDERKQRALAAAAKKKLEGDLKDLELQADSAIKGREEAIKQLRKLQAQMKDFQRELDDARASRDEI 931
Cdd:PRK02224 275 EELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 932 FATSKENEKKAKSLEADLMQLQEDLAAAERARKQADLEKEELAEELASSLSGRNTLQDEKRRLEARIAQLEEELEEEQGN 1011
Cdd:PRK02224 355 EERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEAT 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1012 MEAMSDRVRKA-TLQAEQLSNELATERSTAQKNESArqqlerqnKELRSKLQEVEgAVKAKLKSTVAALEAKIAQLEEQV 1090
Cdd:PRK02224 435 LRTARERVEEAeALLEAGKCPECGQPVEGSPHVETI--------EEDRERVEELE-AELEDLEEEVEEVEERLERAEDLV 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1091 EQEAR------EKQAATKSLKQKDKKLKEVLLQVEDERKMAEQYKEQAEKGNTKVKQLKRQLEEAEEESQRINANRRKLQ 1164
Cdd:PRK02224 506 EAEDRierleeRREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELK 585
|
....
gi 568994733 1165 RELD 1168
Cdd:PRK02224 586 ERIE 589
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
452-674 |
5.74e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.23 E-value: 5.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 452 AQVQEMRQKHTQAVEELTEQLEQFKRAKANLDKSKQTLEKENADLAGELRVLGQAKQEVEHKKKKLEVQLQDLQSKCsdg 531
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL--- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 532 ERARAELSDKVHKLQNEVESVTGMLNEAEGKAIKLAKDVASLGSQLQDTQELLQEETRQKLNVSTKLRQLEDERNSLQDQ 611
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568994733 612 LDEEMEAKQNLERHVSTLNIQLSDSKKKLQDFASTIEVMEEGKKRLQKEMEGLSQQYEEKAAA 674
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
537-1187 |
7.55e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 53.49 E-value: 7.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 537 ELSDKVHKLQNEVESVTGMLNEAEGKAIKLAKDVASLGSQLQDTQELLQEETRQKLNVSTKLRQLEDERNSLQDQLDEEM 616
Cdd:TIGR04523 37 QLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDK 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 617 EAKQNLERHVSTLNIQLSDSKKKLQDFASTIEVMEEGKKRLQKEMEGLSQQYEEKAAAYDKLEKTKNRLQQELDDLVVDL 696
Cdd:TIGR04523 117 EQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKL 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 697 DNQRQLVSNLEKKQKKFDQLLAEEKNISSKYADERDRAEAEAREKETKALSLARALEEALEAKEELERTNKMLKAEMEDL 776
Cdd:TIGR04523 197 LKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKEL 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 777 VSSKddvgknvheleKSKRALETQMEEMKTQLEELEDELQATEDAKLRLEVNMQALKgqfERDLQARDEQNEEKRRQLQR 856
Cdd:TIGR04523 277 EQNN-----------KKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKK---LEEIQNQISQNNKIISQLNE 342
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 857 QLHEYETELEDERKQRALAAAAKKKLEGDLKDLElqadsaiKGREEAIKQLRKLQAQMKDFQRELddarasrdeifatsK 936
Cdd:TIGR04523 343 QISQLKKELTNSESENSEKQRELEEKQNEIEKLK-------KENQSYKQEIKNLESQINDLESKI--------------Q 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 937 ENEKKAKSLEADLMQLQEDLAAAERARKQADLEKEELAEELASslsgrntLQDEKRRLEARIAQLEEELEEEQGNMEAMS 1016
Cdd:TIGR04523 402 NQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKD-------LTNQDSVKELIIKNLDNTRESLETQLKVLS 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1017 DRVRKATLQAEQLSNELATERSTAQKNESARQQLERQNKELRSKLQEVEGAVKaKLKSTVAALEAKIAQLEEQVE----- 1091
Cdd:TIGR04523 475 RSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIE-KLESEKKEKESKISDLEDELNkddfe 553
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1092 --------------QEAREKQAATKSLKQKDKKLKEVLLQVEDERKmaeQYKEQAEKGNTKVKQLKRQLEEAEEESQRIN 1157
Cdd:TIGR04523 554 lkkenlekeideknKEIEELKQTQKSLKKKQEEKQELIDQKEKEKK---DLIKEIEEKEKKISSLEKELEKAKKENEKLS 630
|
650 660 670
....*....|....*....|....*....|
gi 568994733 1158 ANRRKLQRELDEATESNEAMGREVNALKSK 1187
Cdd:TIGR04523 631 SIIKNIKSKKNKLKQEVKQIKETIKEIRNK 660
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
931-1178 |
1.00e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.46 E-value: 1.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 931 IFATSKENEKKAKSLEADLMQLQEDLAAAERARKQADLEkeelaeelasslsgRNTLQDEKRRLEARIAQLEEELEEEQG 1010
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKE--------------EKALLKQLAALERRIAALARRIRALEQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1011 NMEAMSDRVRKATLQAEQLSNELATERSTAQKNESARQQLERQNK-ELRSKLQEVEGAVK--AKLKSTVAALEAKIAQLE 1087
Cdd:COG4942 77 ELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPlALLLSPEDFLDAVRrlQYLKYLAPARREQAEELR 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1088 EQVEQEAREKQAATKSLKQKDKKLKEVLLQVEDERKMAEQYKEQAEKGNTKVKQLKRQLEEAEEESQRINANRRKLQREL 1167
Cdd:COG4942 157 ADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
250
....*....|.
gi 568994733 1168 DEATESNEAMG 1178
Cdd:COG4942 237 AAAAERTPAAG 247
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
334-1170 |
1.11e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 53.05 E-value: 1.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 334 LQAQIAELKMQLAKKEEELQAALARLDEEIAQKNNALKKIRELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKT 413
Cdd:pfam02463 140 QGGKIEIIAMMKPERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKL 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 414 ELEDTLDSTATQQELRAKREQEVTVLKKALDEETRS--HEAQVQEMRQKHTQAVEELTEQLEQFKRAKANLDKSKQTLEK 491
Cdd:pfam02463 220 ELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESskQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELK 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 492 ENADLAGELRV-LGQAKQEVEHKKKKLEVQLQDLQSKCSDGERARAELSDKVHKLQNEVESVTGMLNEAEGKAIKLAKDV 570
Cdd:pfam02463 300 SELLKLERRKVdDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKK 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 571 ASLGSQLQDTQELLQEETRQKLN-------VSTKLRQLEDERNSLQDQLDEEMEAKQNLERHVSTLNIQLSDSKKKLQDF 643
Cdd:pfam02463 380 KLESERLSSAAKLKEEELELKSEeekeaqlLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELK 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 644 ASTIEVMEEGKKRLQKEMEGLSQQYEEKAAAYDKLEKTKNRLQQELDDLVVDLDNQRQLVSNLEKKQKKFDQLLAEEKNI 723
Cdd:pfam02463 460 LLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVE 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 724 SSKYADERDRAEAEAREKETKALSLARALEEALEAKEELERTNKMLKAEMEDLVSSKDDVGKNVHELEKSKRALETqMEE 803
Cdd:pfam02463 540 NYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEA-DED 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 804 MKTQLEELEDELQATEDAKLRLEVNMQALKGQFERDLQARDEQNEEKRR--QLQRQLHEYETELEDERKQRALAAAAKKK 881
Cdd:pfam02463 619 DKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASlsELTKELLEIQELQEKAESELAKEEILRRQ 698
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 882 LEGDLKDLELQADSAIKGREEAIKQLRKLQAQMKDFQRELDDARASRDEIFATSKENEKKAKSLEADLMQLQEDLAAAER 961
Cdd:pfam02463 699 LEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAE 778
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 962 ARKQADLEKEELAEELASSLSGRNTLQDEKRRLEARIAQLEEELEEEQGNMEAMSDRVRKA-TLQAEQLSNELATERSTA 1040
Cdd:pfam02463 779 EREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELAlELKEEQKLEKLAEEELER 858
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1041 QKNESARQQLERQNKELRSKLQEVEGAVKAKLKSTVAALEAKIAQLEEQVEQEAREKQAATKSL-KQKDKKLKEVLLQVE 1119
Cdd:pfam02463 859 LEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERiKEEAEILLKYEEEPE 938
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|.
gi 568994733 1120 DERKMAEQYKEQAEKGNTKVKQLKRQLEEAEEESQRINANRRKLQRELDEA 1170
Cdd:pfam02463 939 ELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEER 989
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
122-742 |
1.12e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 53.19 E-value: 1.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 122 QKIKERQQKAETELKeleQKHTQLAEEKTLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARL---------- 191
Cdd:pfam05483 88 EKIKKWKVSIEAELK---QKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRhlcnllketc 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 192 EEEEDRGQQLQAERKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIK-KLEDDILVMDDQNSKLSKERKLLEERVSD 270
Cdd:pfam05483 165 ARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHfKLKEDHEKIQHLEEEYKKEINDKEKQVSL 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 271 LTTNLAEEEEKAKNLTKLKSKHESMISELEVRLKKEEKSRQEL----EKLKRKLEGDASDFHEQIADLQAQIAELKMQLA 346
Cdd:pfam05483 245 LLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELiekkDHLTKELEDIKMSLQRSMSTQKALEEDLQIATK 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 347 KKEEELQAALARLDEEIAQKNNALKKIRELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTELEDTLDSTATQQ 426
Cdd:pfam05483 325 TICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKE 404
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 427 ---------------------------ELRAKREQEVTVLKKALDEETRSHEAQVQEMR---QKHTQAVEELTEQLEQFK 476
Cdd:pfam05483 405 veleelkkilaedeklldekkqfekiaEELKGKEQELIFLLQAREKEIHDLEIQLTAIKtseEHYLKEVEDLKTELEKEK 484
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 477 RAKANLDKSKQTLEKENADLAGELR----VLGQAKQEVEHKKKKLEVQLQDLQSKCSDGERARAELSDKVHKLQNEVESV 552
Cdd:pfam05483 485 LKNIELTAHCDKLLLENKELTQEASdmtlELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEV 564
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 553 TGMLNEAEGKAIKLAKDVASLGSQLQDTQELLQEETRQKLNVSTKLRQLEDERNSLQDQLDEEMEAKQNLERHVSTLNIQ 632
Cdd:pfam05483 565 KCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELE 644
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 633 LSDSKKKLQDFASTIEVMEEGKKRLQKEMEGLSQQYEEKAAAYDKLEKTKNRLQQ---------------ELDDLVVDLD 697
Cdd:pfam05483 645 LASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQhkiaemvalmekhkhQYDKIIEERD 724
|
650 660 670 680
....*....|....*....|....*....|....*....|....*.
gi 568994733 698 NQRQLVSNLEKKQKKFDQLLAEE-KNISSKYADERDRAEAEAREKE 742
Cdd:pfam05483 725 SELGLYKNKEQEQSSAKAALEIElSNIKAELLSLKKQLEIEKEEKE 770
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
202-955 |
1.47e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 52.67 E-value: 1.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 202 QAERKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNSKLSKERKLLEERVSDLTTNLAEEEEK 281
Cdd:pfam02463 173 EALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 282 AKNLTKLKSKHESMISELEVRLKKEEKSRQELEKLK-------RKLEGDASDFHEQIADLQAQIAELKMQLAKKEEELQA 354
Cdd:pfam02463 253 IESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELkllakeeEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKK 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 355 ALARLDEEIAQKNNALKKIRELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTELEDTLDSTATQQELRAKREQ 434
Cdd:pfam02463 333 EKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLE 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 435 EVTVLKKALDEETRSHEAQVQEMRQKHTQAVEELTEQLEQFKRAKANLDKSKQTLEKENADLAGELRVLGQAKQEVEHKK 514
Cdd:pfam02463 413 LARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSR 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 515 KKLEVQLQDLQSKCSDGERARAELSDKVHKLQNEVESVTGMLNEAEGK---AIKLAKDVASLGSQLQDTQELLQEETRQK 591
Cdd:pfam02463 493 QKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENykvAISTAVIVEVSATADEVEERQKLVRALTE 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 592 LNVSTKLRQLEDERNSLQDQLDEEMEAKQNLERHVSTLNIQLSDSKKKLQDFASTIEVMEEGKKRLQKEMEGLSQQYEEK 671
Cdd:pfam02463 573 LPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGV 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 672 AAAYDKLEKTKNRLQQELDDLVVDLDNQRQLVSNLEKKQKKFDQLLAEEKNISSKYADERDRAEAEAREKETKALSLARA 751
Cdd:pfam02463 653 SLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQD 732
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 752 LEEALEAKEELERTNKMLKAEMEDLVSSKDDVGKNVHELEKSKRALETQMEEMKTQLEELEDELQATEDAKLRLEVNMQA 831
Cdd:pfam02463 733 KINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKE 812
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 832 LKGQFERDLQARDEQNEEKrrqlQRQLHEYETELEDERKQRALAAAAKKKLEGDLKDLELQADSAIKGREEAIKQLRKLQ 911
Cdd:pfam02463 813 EAELLEEEQLLIEQEEKIK----EEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDEL 888
|
730 740 750 760
....*....|....*....|....*....|....*....|....
gi 568994733 912 AQMKDFQRELDDARASRDEIFATSKENEKKAKSLEADLMQLQED 955
Cdd:pfam02463 889 ESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLK 932
|
|
| Myosin_head |
pfam00063 |
Myosin head (motor domain); |
1-31 |
1.65e-06 |
|
Myosin head (motor domain);
Pssm-ID: 395017 [Multi-domain] Cd Length: 674 Bit Score: 52.28 E-value: 1.65e-06
10 20 30
....*....|....*....|....*....|.
gi 568994733 1 MDGKQACILMIKALELDPNLYRIGQSKIFFR 31
Cdd:pfam00063 644 GDAKKGCEAILQSLNLDKEEYQFGKTKIFFR 674
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
891-1162 |
1.97e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.69 E-value: 1.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 891 LQADSAIKGREEAIKQLRKLQAQMKDFQRELDDARASRDEIFATSKENEKKAKSLEADLMQLQEDLAAAERARKQadlek 970
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAE----- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 971 eelaeelasslsgrntLQDEKRRLEARIAQLEeeleeeqgnmEAMSDRVRKATLQAEQLSNELATERSTAQKNESARQQL 1050
Cdd:COG4942 88 ----------------LEKEIAELRAELEAQK----------EELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYL 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1051 ERQNKELRSKLQEVEgAVKAKLKSTVAALEAKIAQLEEQVEQEAREKQAATKSLKQKDKKLKEVLLQVEDERKMAEQYKE 1130
Cdd:COG4942 142 KYLAPARREQAEELR-ADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQ 220
|
250 260 270
....*....|....*....|....*....|..
gi 568994733 1131 QAEKGNTKVKQLKRQLEEAEEESQRINANRRK 1162
Cdd:COG4942 221 EAEELEALIARLEAEAAAAAERTPAAGFAALK 252
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
196-425 |
2.15e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 2.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 196 DRGQQLQAERKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNSKLSKERKLLEERVSDLTTNL 275
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 276 AEEEEKAKNLTKLKSKHeSMISELEVRLKKEekSRQELEKLKRKLEGDASDFHEQIADLQAQIAELKMQLAKKEEELQAA 355
Cdd:COG4942 100 EAQKEELAELLRALYRL-GRQPPLALLLSPE--DFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 356 LARLDEEIAQKNNALKKIRELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTELEDTLDSTATQ 425
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
122-568 |
2.52e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.07 E-value: 2.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 122 QKIKERQQKAETELKELEQKHTQLAEEKTLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEEDRGQQL 201
Cdd:PTZ00121 1528 KKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKM 1607
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 202 QAERKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNSKLSKERKLLEERVSDLTTNLAEEEEK 281
Cdd:PTZ00121 1608 KAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDE 1687
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 282 AKNLTKLKSKHESMISELEVRlKKEEKSRQELEKLKRKLEgdasdfheqiadlqaqIAELKMQLAKKEEELQAALArldE 361
Cdd:PTZ00121 1688 KKAAEALKKEAEEAKKAEELK-KKEAEEKKKAEELKKAEE----------------ENKIKAEEAKKEAEEDKKKA---E 1747
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 362 EIAQKNNALKKIRELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTeLEDTLDSTATQQELRAKREQEVTVLKK 441
Cdd:PTZ00121 1748 EAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKK-IKDIFDNFANIIEGGKEGNLVINDSKE 1826
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 442 ALDEETRSHEAQVQEMRqkhtqaveeltEQLEQFKRAKANLDKSKQTLEKENADLAGELRVLGQAKQEVEHKKKKLEVQL 521
Cdd:PTZ00121 1827 MEDSAIKEVADSKNMQL-----------EEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDK 1895
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 568994733 522 QDLQSKCSDGERARAELSDKVHKLQNEvESVTGMLNEAEGKAIKLAK 568
Cdd:PTZ00121 1896 DDIEREIPNNNMAGKNNDIIDDKLDKD-EYIKRDAEETREEIIKISK 1941
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
250-924 |
3.14e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.66 E-value: 3.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 250 MDDQNSKLSKERKLLEERVSDLTTNLAEEEEKAKNLTKLKSKHEsmiselevrlKKEEKSRQELEKLKRKLEGDASDFHE 329
Cdd:pfam15921 94 LNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRES----------QSQEDLRNQLQNTVHELEAAKCLKED 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 330 QIADLQAQIAELKMQLAKKE---EELQAALARLDEEIAQK-----NNALKKIRELEGHISDLQEDLDSERA--------A 393
Cdd:pfam15921 164 MLEDSNTQIEQLRKMMLSHEgvlQEIRSILVDFEEASGKKiyehdSMSTMHFRSLGSAISKILRELDTEISylkgrifpV 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 394 RNKAEKQKRDLGEELEALKTELEDTLDSTATQQELR----------------------------------------AKRE 433
Cdd:pfam15921 244 EDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEitgltekassarsqansiqsqleiiqeqarnqnsmymrqlSDLE 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 434 QEVTVLKKALDEETRSHEAQVQEMRQKHTQAVEELTE---QLEQFKRAKANLDKSKQTLEKENADLAGELRVLGQAKQEV 510
Cdd:pfam15921 324 STVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEartERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRL 403
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 511 EHKKKKLEVQLQDLQSKCSDGERARAELSDKVHKLQNEVE-SVTGMLNEAEGKAIKLAKdVASLGSQLQDTQELL----Q 585
Cdd:pfam15921 404 WDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQgQMERQMAAIQGKNESLEK-VSSLTAQLESTKEMLrkvvE 482
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 586 EETRQKLNVSTKLRQLEDERNSLQdqldeemEAKQNLERHVSTLNIQLSDSKKKLQDFAStIEVMEEGKKRLQKEMEGLS 665
Cdd:pfam15921 483 ELTAKKMTLESSERTVSDLTASLQ-------EKERAIEATNAEITKLRSRVDLKLQELQH-LKNEGDHLRNVQTECEALK 554
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 666 QQYEEKaaaydklEKTKNRLQQELDDLVVDLDNQRQLVSNLEKKQKKFDQLLAEEKNISSKYADERDRAEAEAREKETKA 745
Cdd:pfam15921 555 LQMAEK-------DKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARV 627
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 746 LSLARALEEALEAKEELERTNKMLKAEMEDLV----SSKDDVGKNVHELEKSKRALETQMEEMKTQLEELEDELQATEDA 821
Cdd:pfam15921 628 SDLELEKVKLVNAGSERLRAVKDIKQERDQLLnevkTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSE 707
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 822 KLRLEVNMQALKGQFERDLQ---ARDEQNEEKRRQ---LQRQLHEYETELEDERKQRALAAAAKKKLEGDLKDLELQADS 895
Cdd:pfam15921 708 LEQTRNTLKSMEGSDGHAMKvamGMQKQITAKRGQidaLQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNK 787
|
730 740
....*....|....*....|....*....
gi 568994733 896 AIKGREEAIKQLRKLQAQMKDFQRELDDA 924
Cdd:pfam15921 788 MAGELEVLRSQERRLKEKVANMEVALDKA 816
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
597-1135 |
3.74e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.22 E-value: 3.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 597 KLRQLEDERNSLQDQLDEEMEAKQNLERHVSTLNIQLSDSKKKLQDFASTIEVMEEGKKRLqKEMEGLSQQYEEKAAAYD 676
Cdd:PRK03918 225 KLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL-KELKEKAEEYIKLSEFYE 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 677 KLEKTKNRLQQELDDLVVDLDNQRQLVSNLEKKQKKFDQLLAEEKNISSKYADERDRAEAEAREKEtkalslaraleeal 756
Cdd:PRK03918 304 EYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKA-------------- 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 757 eakeelertnkmLKAEMEDLvsSKDDVGKNVHELEKSKRALETQMEEMKTQLEELEDELQATEDAKLRLEVNMQALKGQF 836
Cdd:PRK03918 370 ------------KKEELERL--KKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAK 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 837 ERDLQARDEQNEEKRRQLqrqLHEYETELEDERKQRALAAAAKKKLEGDLKDLE--LQADSAIKGREEAIKQLRKLQAQM 914
Cdd:PRK03918 436 GKCPVCGRELTEEHRKEL---LEEYTAELKRIEKELKEIEEKERKLRKELRELEkvLKKESELIKLKELAEQLKELEEKL 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 915 KDFQRE-LDDARASRDEIFATSKENEKKAKSLEADLMQLQE---DLAAAERARKQADLEKEELAEELASSLSGRNTLQDE 990
Cdd:PRK03918 513 KKYNLEeLEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEElkkKLAELEKKLDELEEELAELLKELEELGFESVEELEE 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 991 KRRLEARIAQLEEELEEEQGNMEAMSDRVRKATLQAEQLSNELATERSTAqknESARQQLERQNKELRSKLQEVEGAVKA 1070
Cdd:PRK03918 593 RLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRL---EELRKELEELEKKYSEEEYEELREEYL 669
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568994733 1071 KLKSTVAALEAKIAQLEEQVEQEAR------EKQAATKSLKQKDKKLKEVLLQVEDERKMAEQYKEQAEKG 1135
Cdd:PRK03918 670 ELSRELAGLRAELEELEKRREEIKKtleklkEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKER 740
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
128-428 |
4.86e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 50.89 E-value: 4.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 128 QQKAETELKELEQKHtQLAEEKTLLQEQLQAETELYAEAEEM---------RVRLAAKKQELEEILHEMEARLEEEEDRG 198
Cdd:pfam17380 302 RQEKEEKAREVERRR-KLEEAEKARQAEMDRQAAIYAEQERMamerereleRIRQEERKRELERIRQEEIAMEISRMREL 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 199 QQLQAERkkmaqQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNSKLSKERKLLEERVSDLTTNLAEE 278
Cdd:pfam17380 381 ERLQMER-----QQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEE 455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 279 EEKAKNLTKLKSKHESMISElEVRLKKEEKSRQELEKLKRKLegdasdfheqiadlqaqiaelkmqlakKEEELQAALAR 358
Cdd:pfam17380 456 QERQQQVERLRQQEEERKRK-KLELEKEKRDRKRAEEQRRKI---------------------------LEKELEERKQA 507
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 359 LDEEIAQKNNALKKIRELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTELEDTLDSTATQQEL 428
Cdd:pfam17380 508 MIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMEREREM 577
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
108-630 |
5.95e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 50.99 E-value: 5.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 108 TRQEEEMQAKEEEMQKIKERQQKAETELKELEQKHTQLAEEKTLLQEQ----LQAETELYAEAEEMRVRLAAKKQELEEI 183
Cdd:pfam12128 283 ETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQhgafLDADIETAAADQEQLPSWQSELENLEER 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 184 LhemEARLEEEEDRGQQLQAERKKMAQQMLDLEEQLEEEEAA-RQKLQLEKVTAEAKIKKLEDDI-LVMDDQNSKLSKER 261
Cdd:pfam12128 363 L---KALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKiREARDRQLAVAEDDLQALESELrEQLEAGKLEFNEEE 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 262 KLLEERVSDLTTNLAE---EEEKAKNLTKLKSKHESMISELEVRLKKEEKSRQELEKLkRKLEGDASDFHEQIA----DL 334
Cdd:pfam12128 440 YRLKSRLGELKLRLNQataTPELLLQLENFDERIERAREEQEAANAEVERLQSELRQA-RKRRDQASEALRQASrrleER 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 335 QAQIAELKMQLAKKEEELQAALA------------------------------------------RLDEEIAQKNNALKK 372
Cdd:pfam12128 519 QSALDELELQLFPQAGTLLHFLRkeapdweqsigkvispellhrtdldpevwdgsvggelnlygvKLDLKRIDVPEWAAS 598
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 373 IRELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTELEDTL----DSTATQQELRAKREQEVTVLKKALDEETR 448
Cdd:pfam12128 599 EEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARtalkNARLDLRRLFDEKQSEKDKKNKALAERKD 678
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 449 SHEAQVQEMRQKHTQAVEELTEQLEQFKRAKANLDKSKQTLEKEnadLAGELRV-LGQAKQEVEHKKKKLEVQLQDLQSK 527
Cdd:pfam12128 679 SANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQV---VEGALDAqLALLKAAIAARRSGAKAELKALETW 755
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 528 CSDGERARAELSDKVHKLQNEVESVTGMLNEAEGKAIKLA---------------KDVASLGSQLQDTQELLQEETRQKL 592
Cdd:pfam12128 756 YKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLryfdwyqetwlqrrpRLATQLSNIERAISELQQQLARLIA 835
|
570 580 590
....*....|....*....|....*....|....*...
gi 568994733 593 NVSTKLRQLEDERNSLQDQLDEEMEAKQNLERHVSTLN 630
Cdd:pfam12128 836 DTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLA 873
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
135-727 |
7.01e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.40 E-value: 7.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 135 LKELEQKHTQLAEEKTLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEEDRGQQLQAERKKMAQQMLD 214
Cdd:TIGR04523 91 LKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEE 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 215 LEEqleeeeaarqklqlekvtaeaKIKKLEDDILVMDDQNSKLSKERKLLEERVSdlttnlaeeeekakNLTKLKSKHES 294
Cdd:TIGR04523 171 LEN---------------------ELNLLEKEKLNIQKNIDKIKNKLLKLELLLS--------------NLKKKIQKNKS 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 295 MISELEvrlkkeeksrqELEKLKRKLEGDASDFHEQIADLQAQIAELKMQLAKKEEELQAALARLDEEIAQKNNALKKIR 374
Cdd:TIGR04523 216 LESQIS-----------ELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIK 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 375 ELEGHISDLQEDLdsERAARNKAEKQKRDLGEELEALKTELEDTLDSTATQQELRAKREQEVTVLKKALDEETRSHEAQV 454
Cdd:TIGR04523 285 ELEKQLNQLKSEI--SDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQ 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 455 QEMRQKHTQaVEELTEQLEQFKRAKANLDKSKQTLEKENADLAGELRVLGQAKQEVEHKKKKLEVQLQDLQSKCSDGERA 534
Cdd:TIGR04523 363 RELEEKQNE-IEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSE 441
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 535 RAELSDKVHKLQNEVESVTGMLNEAEGKAIKLAKDVASLGSQLQDTQELLQEETRQKLNVSTKLRQLEDERNSLQDQLDE 614
Cdd:TIGR04523 442 IKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISS 521
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 615 EMEAKQNLERHVSTLNIQLSDSKKKLQ--DFASTIEVMEEGKKRLQKEMEGLSQQYEEKAAAYDKLEKTKNRLQQELDDL 692
Cdd:TIGR04523 522 LKEKIEKLESEKKEKESKISDLEDELNkdDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDL 601
|
570 580 590
....*....|....*....|....*....|....*....
gi 568994733 693 VVDLDNQRQLVSNLEKK----QKKFDQLLAEEKNISSKY 727
Cdd:TIGR04523 602 IKEIEEKEKKISSLEKElekaKKENEKLSSIIKNIKSKK 640
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
374-962 |
9.72e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 9.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 374 RELEGHISDLQEDLDSERAARNKAEK--QKRDLGEELEALKTELEDTLDSTATQQELRAK-----REQEVTVLKKALDEE 446
Cdd:COG4913 221 PDTFEAADALVEHFDDLERAHEALEDarEQIELLEPIRELAERYAAARERLAELEYLRAAlrlwfAQRRLELLEAELEEL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 447 TRSHEAQVQEMRQkHTQAVEELTEQLEQFKRAKANLD-KSKQTLEKEnadlageLRVLGQAKQEVEHKKKKLEVQLQDLQ 525
Cdd:COG4913 301 RAELARLEAELER-LEARLDALREELDELEAQIRGNGgDRLEQLERE-------IERLERELEERERRRARLEALLAALG 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 526 SKCSDGERARAELSDKVHKLqnevesvtgmlneaegkaiklakdVASLGSQLQDTQELLQEETRQKLNVSTKLRQLEDER 605
Cdd:COG4913 373 LPLPASAEEFAALRAEAAAL------------------------LEALEEELEALEEALAEAEAALRDLRRELRELEAEI 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 606 NSLQDQ---LDEEM-EAKQNLERHvstlniqLSDSKKKLQDFASTIEVMEEGkKRLQKEMEGL-----------SQQYEE 670
Cdd:COG4913 429 ASLERRksnIPARLlALRDALAEA-------LGLDEAELPFVGELIEVRPEE-ERWRGAIERVlggfaltllvpPEHYAA 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 671 KAAAYDKLeKTKNRLQ-QELDDLVVDLDNQR----QLVSNLEKKQKKFDQLLAEEknisskYADERDRA---EAEAREKE 742
Cdd:COG4913 501 ALRWVNRL-HLRGRLVyERVRTGLPDPERPRldpdSLAGKLDFKPHPFRAWLEAE------LGRRFDYVcvdSPEELRRH 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 743 TKALSLARALEEALEAKEELERtnkmlKAEMEDLVSSKDDVGKnVHELEKSKRALETQMEEMKTQLEELEDELQATEDAK 822
Cdd:COG4913 574 PRAITRAGQVKGNGTRHEKDDR-----RRIRSRYVLGFDNRAK-LAALEAELAELEEELAEAEERLEALEAELDALQERR 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 823 LRLevnmQALKGQFERDLQARdeQNEEKRRQLQRQLHEYE------TELEDERKQRALAAAAKKKLEGDLKDLELQADSA 896
Cdd:COG4913 648 EAL----QRLAEYSWDEIDVA--SAEREIAELEAELERLDassddlAALEEQLEELEAELEELEEELDELKGEIGRLEKE 721
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568994733 897 IKGREEAIKQLRKLQAQMKDFQRELDDARASRDEIFATSKENEKK-AKSLEADLMQLQEDLAAAERA 962
Cdd:COG4913 722 LEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERElRENLEERIDALRARLNRAEEE 788
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
935-1133 |
1.02e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.02 E-value: 1.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 935 SKENEKKAKSLEADLMQLQEDLAAAERARKQ---------ADLEKEELAEELASSLSGRNTLQDEKRRLEARIAQLEEEL 1005
Cdd:COG3206 170 REEARKALEFLEEQLPELRKELEEAEAALEEfrqknglvdLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1006 EEEQGNMEAMSDRVRKATLQAE--QLSNELATERSTAQKNESARQQLERQNKELRSKLQEVEGAVKAKLKSTVAALEAKI 1083
Cdd:COG3206 250 GSGPDALPELLQSPVIQQLRAQlaELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQARE 329
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 568994733 1084 AQLEEQVEQEarekQAATKSLKQKDKKLKEVLLQVEDERKMAEQYKEQAE 1133
Cdd:COG3206 330 ASLQAQLAQL----EARLAELPELEAELRRLEREVEVARELYESLLQRLE 375
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
794-1023 |
1.05e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 1.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 794 KRALETQMEEMKTQLEELEDELQATEDAKLRLEVnMQALKGQFERDLQARDEQNEEKRRQLQRQLHEYETELEDERKQRA 873
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERAHEALEDAREQIEL-LEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELE 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 874 LAAAAKKKLEGDLKDLELQADSAIKGREEAIKQLRKLQ-AQMKDFQRELDDARASRDEIFATSKENEKKAKSLEADLMQL 952
Cdd:COG4913 299 ELRAELARLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPAS 378
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568994733 953 QEDLAA----AERARKQADLEKEELAEELASSLSGRNTLQDEKRRLEARIAQLEEELEEEQGNMEAMSDRVRKAT 1023
Cdd:COG4913 379 AEEFAAlraeAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEAL 453
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
599-1149 |
1.33e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 1.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 599 RQLEDERNSLQDQLDEEMEAKQNLE---RHVSTLnIQLSDSKKKLQDFASTIEVMEEGKKRLQkeMEGLSQQYEEKAAAY 675
Cdd:COG4913 221 PDTFEAADALVEHFDDLERAHEALEdarEQIELL-EPIRELAERYAAARERLAELEYLRAALR--LWFAQRRLELLEAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 676 DKLEKTKNRLQQELDDLVVDLDNQRQLVSNLEKK--QKKFDQLLAEEKnisskyadERDRAEAEAREKETKALSLARALE 753
Cdd:COG4913 298 EELRAELARLEAELERLEARLDALREELDELEAQirGNGGDRLEQLER--------EIERLERELEERERRRARLEALLA 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 754 EALEAKEELErtnKMLKAEMEDLVSSKDDVGKNVHELEKSKRALETQMEEMKTQLEELEDELQATEDAKLRLEVNMQALK 833
Cdd:COG4913 370 ALGLPLPASA---EEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALR 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 834 GQFERDLQARDEQ------------NEEK-------------------------------RRQLQRQLHEYETELEDERK 870
Cdd:COG4913 447 DALAEALGLDEAElpfvgelievrpEEERwrgaiervlggfaltllvppehyaaalrwvnRLHLRGRLVYERVRTGLPDP 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 871 QRALAAAAKKKLEGDLKDLELQA--DSAIKGRE-----EAIKQLRK------LQAQMKDFQ--RELDDARASRdEIFATS 935
Cdd:COG4913 527 ERPRLDPDSLAGKLDFKPHPFRAwlEAELGRRFdyvcvDSPEELRRhpraitRAGQVKGNGtrHEKDDRRRIR-SRYVLG 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 936 KENEKKAKSLEADLMQLQEDLAAAERARKQADLEKEELaeelasslsgrntlqDEKRRLEARIAQLEeeleeeqgnmeam 1015
Cdd:COG4913 606 FDNRAKLAALEAELAELEEELAEAEERLEALEAELDAL---------------QERREALQRLAEYS------------- 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1016 SDRVRKATLQAEQLsnELATERSTAQKNESARQQLERQNKELRSKLQEVEGAvKAKLKSTVAALEAKIAQLEEQVEQEAR 1095
Cdd:COG4913 658 WDEIDVASAEREIA--ELEAELERLDASSDDLAALEEQLEELEAELEELEEE-LDELKGEIGRLEKELEQAEEELDELQD 734
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 568994733 1096 EKQAATKSLKQK-----DKKLKEVLLQvEDERKMAEQYKEQAEKGNTKVKQLKRQLEEA 1149
Cdd:COG4913 735 RLEAAEDLARLElrallEERFAAALGD-AVERELRENLEERIDALRARLNRAEEELERA 792
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
597-1088 |
1.38e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 49.65 E-value: 1.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 597 KLRQLEDERNSLQDQLDEEMEAKQNLERHVSTLNIQLSDSKKK---LQDFASTIEVMEEGKKRLQKEMEGLSQQYEEKAA 673
Cdd:PRK02224 207 RLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERreeLETLEAEIEDLRETIAETEREREELAEEVRDLRE 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 674 AYDKLEKTKNRLQQELDDLVVDLDNQRQLVSNLEKKQKKFDQLLAEE-------KNISSKYADERDRAEAEAREKETKAL 746
Cdd:PRK02224 287 RLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECrvaaqahNEEAESLREDADDLEERAEELREEAA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 747 SLARALEEALEAKEELERTNKMLKAEMEDLVSSKDDVGKNVHELEKSKRALETQMEEMKTQLEELEDELQATEDAKLRLE 826
Cdd:PRK02224 367 ELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAE 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 827 VNMQALK----GQFERDlQARDEQNEEKRRQLQrqlhEYETELEDERKQRALAAAAKKKLEgDLKDLELQADSAIKGREE 902
Cdd:PRK02224 447 ALLEAGKcpecGQPVEG-SPHVETIEEDRERVE----ELEAELEDLEEEVEEVEERLERAE-DLVEAEDRIERLEERRED 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 903 AIKQLRKLQAQMKDFQRELDDARASRDEIFATSKENEKKAKSLEADLMQLQEDLAAAERARkQADLEKEELAEELASSLS 982
Cdd:PRK02224 521 LEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKL-AELKERIESLERIRTLLA 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 983 GRNTLQDEKRRLEARIAQLEEELEEEQGNMEAMSDrvRKATLQAEQLSNELATERSTAQKNESARQQLERQNKELRSKlq 1062
Cdd:PRK02224 600 AIADAEDEIERLREKREALAELNDERRERLAEKRE--RKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREE-- 675
|
490 500
....*....|....*....|....*.
gi 568994733 1063 evegavKAKLKSTVAALEAKIAQLEE 1088
Cdd:PRK02224 676 ------RDDLQAEIGAVENELEELEE 695
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
106-490 |
1.52e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 49.27 E-value: 1.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 106 QVTRQEEEMQAKEEEMQKIKERQQKAETELKELEQKHTQLAEEKTLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILH 185
Cdd:PRK02224 343 EAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERD 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 186 EMEARLEEEEDRGQQLQaERKKMAQQMLDLEEQLEEEEAARQKLQLEKVT-AEAKIKKLEDDILVMDDQNSKLSKERKLL 264
Cdd:PRK02224 423 ELREREAELEATLRTAR-ERVEEAEALLEAGKCPECGQPVEGSPHVETIEeDRERVEELEAELEDLEEEVEEVEERLERA 501
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 265 EERVSdLTTNLAEEEEKAKNLTKLKSKHESMISELEVRLKKEEKSRQELEKLKRKLEGDASDFHEQIADLQAQIAELKMQ 344
Cdd:PRK02224 502 EDLVE-AEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSK 580
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 345 LAKKEEELQaalarldeeiaqknnALKKIRELEGHISDLQEDLDS---ERAARNKAEKQKRDLGEELEALKTELEDTLDS 421
Cdd:PRK02224 581 LAELKERIE---------------SLERIRTLLAAIADAEDEIERlreKREALAELNDERRERLAEKRERKRELEAEFDE 645
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568994733 422 TATqQELRAKREQEVTVLKKAlDEETRSHEAQVQEMrQKHTQAVEELTEQLEQFKRAKANLDKSKQTLE 490
Cdd:PRK02224 646 ARI-EEAREDKERAEEYLEQV-EEKLDELREERDDL-QAEIGAVENELEELEELRERREALENRVEALE 711
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
296-472 |
1.86e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 47.61 E-value: 1.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 296 ISELEVRLKKEEKSRQELEKLKRKLEGDASDFHEQIADLQAQIAELKMQLAKKEEELQAALARLDEEIAQKNNAlKKIRE 375
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNV-RNNKE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 376 LEghisDLQEDLDSERAARNKAEKQKRDLGEELEALKTELEDTldstatqQELRAKREQEVTVLKKALDEETRSHEAQVQ 455
Cdd:COG1579 91 YE----ALQKEIESLKRRISDLEDEILELMERIEELEEELAEL-------EAELAELEAELEEKKAELDEELAELEAELE 159
|
170
....*....|....*..
gi 568994733 456 EMRQKHTQAVEELTEQL 472
Cdd:COG1579 160 ELEAEREELAAKIPPEL 176
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
789-1024 |
2.45e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 2.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 789 ELEKSKRALETQMEEMKTQLEELEDELQATEDAKLRLEVNMQALKGQfERDLQARDEQNEEKRRQLQRQLHEYETELEdE 868
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARR-IRALEQELAALEAELAELEKEIAELRAELE-A 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 869 RKQRALAAAAKKKLEGDLKDLELQADSaiKGREEAIKQLRKLQAQMKDFQRELDDARASRDEIFATSKENEKKAKSLEAD 948
Cdd:COG4942 102 QKEELAELLRALYRLGRQPPLALLLSP--EDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568994733 949 LMQLQEDLAAAERARKQADLEKEELAEELASSLSGRNTLQDEKRRLEARIAQLEEELEEEQGNMEAMSDRVRKATL 1024
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGKL 255
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
376-1168 |
3.16e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.58 E-value: 3.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 376 LEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTELEDTLdstatqQELRAKReqevtVLKKALDEETRSHEAQVQ 455
Cdd:pfam15921 108 LRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTV------HELEAAK-----CLKEDMLEDSNTQIEQLR 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 456 EMRQKHTQAVEELTEQLEQFKRAkanldkSKQTLEKENADLAGELRVLGQAkqeVEHKKKKLEVQLQDLQSKC----SDG 531
Cdd:pfam15921 177 KMMLSHEGVLQEIRSILVDFEEA------SGKKIYEHDSMSTMHFRSLGSA---ISKILRELDTEISYLKGRIfpveDQL 247
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 532 ERARAELSDKVHKL-QNEVESVTGMLNEAEGKAIKLAKDVASLGSQ---LQDTQELLQEETRQKlnVSTKLRQLEDERNS 607
Cdd:pfam15921 248 EALKSESQNKIELLlQQHQDRIEQLISEHEVEITGLTEKASSARSQansIQSQLEIIQEQARNQ--NSMYMRQLSDLEST 325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 608 LQDQLDEEMEAKQNLERHVSTLNIQLSDSKKKLQDFASTIEVMEEGKKRLQKEMEGLSQQYEEKAAAYDKLEKTKNRLQQ 687
Cdd:pfam15921 326 VSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWD 405
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 688 ELDDLVVDLDNQRQLVSNLEKKQKKFDQLLAEEKNISSKYADERDRAEAEAREKETKALSLAraleealeakEELERTNK 767
Cdd:pfam15921 406 RDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLT----------AQLESTKE 475
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 768 MLKAEMEDLVSSKddvgknvHELEKSKRALEtqmeEMKTQLEELEDELQAT--EDAKLRLEVNMQALKGQFERDLQARDE 845
Cdd:pfam15921 476 MLRKVVEELTAKK-------MTLESSERTVS----DLTASLQEKERAIEATnaEITKLRSRVDLKLQELQHLKNEGDHLR 544
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 846 QNEEKRRQLQRQLHEYETELEDERKQRALAAAAKKKlegdlkdlelqadsaiKGREEAIKQLRK--LQAQMKDFQRELDD 923
Cdd:pfam15921 545 NVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQ----------------HGRTAGAMQVEKaqLEKEINDRRLELQE 608
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 924 ARASRDEIFATSKENEKKAKSLEADLMQLQEDLAAAERARKQADLEKEELAEELASSLSGRNTLQDEKRRLEARIaqlee 1003
Cdd:pfam15921 609 FKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNF----- 683
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1004 eleeeQGNMEAMSDRVRKATLQAEQLSNELATERSTAQKNESARQQLERQNKELRSKLQEVEGAVKaklkstvaALEAKI 1083
Cdd:pfam15921 684 -----RNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQID--------ALQSKI 750
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1084 AQLEEQVEQEAREKQAatksLKQKDKKLKEVLLQVEDER-KMA---EQYKEQAEKGNTKVKQLKRQLEEAEE-------- 1151
Cdd:pfam15921 751 QFLEEAMTNANKEKHF----LKEEKNKLSQELSTVATEKnKMAgelEVLRSQERRLKEKVANMEVALDKASLqfaecqdi 826
|
810
....*....|....*...
gi 568994733 1152 -ESQRINANRRKLQRELD 1168
Cdd:pfam15921 827 iQRQEQESVRLKLQHTLD 844
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
332-715 |
3.37e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 48.37 E-value: 3.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 332 ADLQAQIAELKMQLAKKEEE------LQAALARLD--EEIAQKNNALKK-IRELEGHISDLQEDLDSERAArNKAEKQKR 402
Cdd:PRK11281 39 ADVQAQLDALNKQKLLEAEDklvqqdLEQTLALLDkiDRQKEETEQLKQqLAQAPAKLRQAQAELEALKDD-NDEETRET 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 403 DLGEELEALKTELEDTLDSTAT-QQELRAKREQEVTVlkkaldeETRSHEAQVQEMR-QKHTQaveELTEQLEQFKRAKA 480
Cdd:PRK11281 118 LSTLSLRQLESRLAQTLDQLQNaQNDLAEYNSQLVSL-------QTQPERAQAALYAnSQRLQ---QIRNLLKGGKVGGK 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 481 NLDKSKQTLekenadLAGELRVLGQakqEVEHKKKKLEV--QLQDLqskcsdGERARAELSDKVHKLQNEVESVTGMLNE 558
Cdd:PRK11281 188 ALRPSQRVL------LQAEQALLNA---QNDLQRKSLEGntQLQDL------LQKQRDYLTARIQRLEHQLQLLQEAINS 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 559 aegKAIKLAKDVASLGSQLQDTQE-----LLQEETRQKLNVSTKLRQLEDERNSL-QD------QLDEEMEAKQNLERHV 626
Cdd:PRK11281 253 ---KRLTLSEKTVQEAQSQDEAARiqanpLVAQELEINLQLSQRLLKATEKLNTLtQQnlrvknWLDRLTQSERNIKEQI 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 627 STLNIQLSDSK---KKLQDFASTIEVMEEGKK----RLqkEMEGLSQQYEE--KAAAY-DKLEKT---------KNRLQQ 687
Cdd:PRK11281 330 SVLKGSLLLSRilyQQQQALPSADLIEGLADRiadlRL--EQFEINQQRDAlfQPDAYiDKLEAGhksevtdevRDALLQ 407
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 568994733 688 ELD---DLVVDLD---------------NQRQLVSNLEKKQKKFDQ 715
Cdd:PRK11281 408 LLDerrELLDQLNkqlnnqlnlainlqlNQQQLLSVSDSLQSTLTQ 453
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
787-1221 |
5.42e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 5.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 787 VHELEKSKRALETQMEEMKTQLEELEDELQATEDAKLRLEVNMQALKGQFERDLQARDEQNEEKRRQLQRQLHEYETEL- 865
Cdd:COG4913 290 LELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLa 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 866 ----------EDERKQRALAAAAKKKLEGDLKDLELQADSAIKGREEAIKQLRKLQAQMKDFQR-------ELDDARasr 928
Cdd:COG4913 370 alglplpasaEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERrksnipaRLLALR--- 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 929 DEIFATSKENEKKAKSLeADLMQLQEDLA----AAERA----------------------------------RKQADLEK 970
Cdd:COG4913 447 DALAEALGLDEAELPFV-GELIEVRPEEErwrgAIERVlggfaltllvppehyaaalrwvnrlhlrgrlvyeRVRTGLPD 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 971 EELAEELASSLSGRNTLQDEKRR--LEARIAQLEEELEEEqgNMEAMsDRVRKATLQAEQLSNELATERSTAQKNESARQ 1048
Cdd:COG4913 526 PERPRLDPDSLAGKLDFKPHPFRawLEAELGRRFDYVCVD--SPEEL-RRHPRAITRAGQVKGNGTRHEKDDRRRIRSRY 602
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1049 QLERQNkelRSKLQEVEGAVkAKLKSTVAALEAKIAQLEEQVEQEAREKQAATKSLKQKDKKLKevLLQVEDERKMAEQY 1128
Cdd:COG4913 603 VLGFDN---RAKLAALEAEL-AELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEID--VASAEREIAELEAE 676
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1129 KEQAEKGNTKVKQLKRQLEEAEEESQRINANRRKLQRELDEATESNEAMGREVNALKSKLRRGNEASFVPSR-RAGGRRV 1207
Cdd:COG4913 677 LERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRaLLEERFA 756
|
490
....*....|....
gi 568994733 1208 IENTDGSEEEMDAR 1221
Cdd:COG4913 757 AALGDAVERELREN 770
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
522-718 |
5.62e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.32 E-value: 5.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 522 QDLQSKCSDGERARAELSDKVHKLQNEVESVtgmlnEAEGKAIKLAKDVASLGSQLQDTQELLQEETRQKLNVSTKLRQL 601
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEA-----EAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEA 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 602 EDERNSLQDQLDEEMEAK---------QNLERHVSTLNIQLSDSKKKLQDFASTI--------EVMEEGKKRLQKEMEGL 664
Cdd:COG3206 239 EARLAALRAQLGSGPDALpellqspviQQLRAQLAELEAELAELSARYTPNHPDVialraqiaALRAQLQQEAQRILASL 318
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 568994733 665 SQQYEEKAAAYDKLEKTKNRLQQELDDLVVDLDNQRQLVSNLEKKQKKFDQLLA 718
Cdd:COG3206 319 EAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQ 372
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
794-1210 |
6.15e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 47.34 E-value: 6.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 794 KRALETQMEEMKTQLEELEDELQATEDAKLRLEVNmqALKGQfERDLQARDEQNEEKRRQLQRQLHEYETELEDERKQRA 873
Cdd:PRK02224 175 RLGVERVLSDQRGSLDQLKAQIEEKEEKDLHERLN--GLESE-LAELDEEIERYEEQREQARETRDEADEVLEEHEERRE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 874 LAAAAkkklEGDLKDLELQADSAIKGREEAIKQLRKLQAQMKDFQRELDDARASRDEIFATSKENEKKAKSLEADLMQLQ 953
Cdd:PRK02224 252 ELETL----EAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELR 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 954 EDLAAAeRARKQADLEKEELAEELASSLSGRNT-LQDEKRRLEARIAQLEEELEEEQGNMEAMSDRVRKATLQAEQLSNE 1032
Cdd:PRK02224 328 DRLEEC-RVAAQAHNEEAESLREDADDLEERAEeLREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVD 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1033 LATERSTAQKNESARQQLERQNKELRSKLQEVEGAVK--------------------AKLKSTVAALEAKIAQLEEQVEq 1092
Cdd:PRK02224 407 LGNAEDFLEELREERDELREREAELEATLRTARERVEeaealleagkcpecgqpvegSPHVETIEEDRERVEELEAELE- 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1093 EAREKQAATKSLKQKDKKLKEVLLQVEDER-------KMAEQYKEQAEKGNTKVKQLKRQLEEAEEESQRINANRRKLQR 1165
Cdd:PRK02224 486 DLEEEVEEVEERLERAEDLVEAEDRIERLEerredleELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEE 565
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 568994733 1166 ELDEATESNEAMGREVNALKSKLRRGNEASFVPSRRAGGRRVIEN 1210
Cdd:PRK02224 566 EAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIER 610
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
62-548 |
6.15e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 6.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 62 ARKAFTKRQQQLTAMKVIQRNCAAYLKLRNWQwwRLFTKVKPLLQVTRQEEEMQAKEEEMQKIKERQQKAETELKELEQK 141
Cdd:COG4913 240 AHEALEDAREQIELLEPIRELAERYAAARERL--AELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEAR 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 142 HTQLAEEKTLLQEQL-----QAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEEDRGQQLQAERKKMAQQMLDLE 216
Cdd:COG4913 318 LDALREELDELEAQIrgnggDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 217 EQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNSKLSKE----RKLLEERVSDLTTNL---------AEEEEKAK 283
Cdd:COG4913 398 EELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARllalRDALAEALGLDEAELpfvgelievRPEEERWR 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 284 N----------LTKL-KSKHESMISE-------------LEVRLKKEEKSRQELEK--LKRKLEGDASDFHeqiadlqaq 337
Cdd:COG4913 478 GaiervlggfaLTLLvPPEHYAAALRwvnrlhlrgrlvyERVRTGLPDPERPRLDPdsLAGKLDFKPHPFR--------- 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 338 iAELKMQLAKK--------EEELQ--------AALARLDEEIAQKN-------------NALKKIRELEGHISDLQEDLD 388
Cdd:COG4913 549 -AWLEAELGRRfdyvcvdsPEELRrhpraitrAGQVKGNGTRHEKDdrrrirsryvlgfDNRAKLAALEAELAELEEELA 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 389 SERAARNKAEKQKRDLGEELEALKTELE---DTLDSTATQQELRAKREQ---------EVTVLKKALDEetrsHEAQVQE 456
Cdd:COG4913 628 EAEERLEALEAELDALQERREALQRLAEyswDEIDVASAEREIAELEAElerldassdDLAALEEQLEE----LEAELEE 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 457 MRQKHTQAVEELTEQLEQFKRAKANLDKSKQTLEKENADLAGELRVLGQAKQEVEHKKKKLEVQLQDLQSKCSDGERARA 536
Cdd:COG4913 704 LEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLN 783
|
570
....*....|..
gi 568994733 537 ELSDKVHKLQNE 548
Cdd:COG4913 784 RAEEELERAMRA 795
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1018-1172 |
6.99e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 6.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1018 RVRKATLQAEQLSNELATERSTAQKNESARQQLERQNKELRSKLQEVEGAVKAklkstvaALEAKIAQLEEQVEQEAREK 1097
Cdd:COG4913 282 RLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRG-------NGGDRLEQLEREIERLEREL 354
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568994733 1098 QAATKSLKQKDKKLKEVLLQVEDErkmAEQYKEQAEKGNTKVKQLKRQLEEAEEESQRINANRRKLQRELDEATE 1172
Cdd:COG4913 355 EERERRRARLEALLAALGLPLPAS---AEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEA 426
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
225-616 |
8.40e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 47.21 E-value: 8.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 225 ARQKLQLEKV-----TAEAKIKKLEDDILVMDDQNSKLSKER------KLLEERVSDLTTNLAEEEEKAKN----LTKLK 289
Cdd:PRK11281 76 DRQKEETEQLkqqlaQAPAKLRQAQAELEALKDDNDEETRETlstlslRQLESRLAQTLDQLQNAQNDLAEynsqLVSLQ 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 290 SKHE---SMISELEVRLkkeeksrQELEK-LKRKLEGDASDFHEQIADLQAQIAELKMQLAKKEEELQAALARLDEEIAQ 365
Cdd:PRK11281 156 TQPEraqAALYANSQRL-------QQIRNlLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQ 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 366 KNNALKKIRELEGHISDLQEDLDSERaarnkaekqkrdlgeelealKTELEDTLDSTATQQElrAKREQEVTVLKKALDE 445
Cdd:PRK11281 229 RDYLTARIQRLEHQLQLLQEAINSKR--------------------LTLSEKTVQEAQSQDE--AARIQANPLVAQELEI 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 446 ETRSHEAQVQEmrqkhTQAVEELTEQLEQFKRAKANLDKSKQTLEKENADLAGEL---RVLGQAKQEVEHKK--KKLEVQ 520
Cdd:PRK11281 287 NLQLSQRLLKA-----TEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLKGSLllsRILYQQQQALPSADliEGLADR 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 521 LQDLQSKCSDGERARAELSDK---VHKL-QNEVESVTGMLNEAegkaiklakdvasLGSQLQDTQELLQEETRQ---KLN 593
Cdd:PRK11281 362 IADLRLEQFEINQQRDALFQPdayIDKLeAGHKSEVTDEVRDA-------------LLQLLDERRELLDQLNKQlnnQLN 428
|
410 420
....*....|....*....|....*..
gi 568994733 594 VSTKL----RQLEDERNSLQDQLDEEM 616
Cdd:PRK11281 429 LAINLqlnqQQLLSVSDSLQSTLTQQI 455
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
95-819 |
9.18e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.89 E-value: 9.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 95 WRLFTKVKPLLQVTRQEEEMQAKEEEMQKIKERQQKAETELKELEQKHTQLAEEKTLLQEQLQAETELYAEAEEMRVRLA 174
Cdd:pfam02463 287 ELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQE 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 175 AKKQELEEILHEMEARLEEEEDRGQQLQaerKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQN 254
Cdd:pfam02463 367 KLEQLEEELLAKKKLESERLSSAAKLKE---EELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQ 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 255 SKLSKERKLLEERVSDLTTNLAEEEEKAKNLTKLK-SKHESMISELEVRLKKEEKSRQELEKLKRKLEGDASDFHEQIAD 333
Cdd:pfam02463 444 GKLTEEKEELEKQELKLLKDELELKKSEDLLKETQlVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGR 523
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 334 LQAQIAELKMQLAKKEEELQAALARLDEEIAQKNNALKKIRELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKT 413
Cdd:pfam02463 524 IISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPIL 603
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 414 ELEDTLDSTATQQELRaKREQEVTVLKKALDEETRSHEAQVQEMRQKHTQAVEELTEQLEQFKRAKANLDKSKQTLEKEN 493
Cdd:pfam02463 604 NLAQLDKATLEADEDD-KRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQ 682
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 494 ADLAGELRVLGQAKQEVEHKKKKLEVQLQDLQSKCSDGERARAELSDKVHKLQNEVEsvtgmlNEAEGKAIKLAKDVASL 573
Cdd:pfam02463 683 EKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELK------LLKQKIDEEEEEEEKSR 756
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 574 GSQLQDTQELLQEETRQKLNVSTKLRQLEDERNSLQDQLDEEMEAKQNLERHVSTLNIQLSDSKKKLQDFASTIEVMEEG 653
Cdd:pfam02463 757 LKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELE 836
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 654 KKRLQKEMEGLSQQYEEKAAAYDKLEKTKNRLQQELDDLVVDLDNQRQLVSNLEKKQKKFDQLLAEEKNISSKYADERDR 733
Cdd:pfam02463 837 ELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKE 916
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 734 AEAEAREKETKALSLARALEEALEAKEELERTNKMLKAEMEDLVSSKDDVGKNVHELEKSKRALETQMEEMKTQLEELED 813
Cdd:pfam02463 917 NEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELE 996
|
....*.
gi 568994733 814 ELQATE 819
Cdd:pfam02463 997 KERLEE 1002
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1025-1172 |
1.03e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.55 E-value: 1.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1025 QAEQLSNELATERSTAQKNESARQQLERQNKELRSKLQEVEGAVKAKLKS-TVAALEAKIAQLEEQVEQEAREKQAATKS 1103
Cdd:COG3206 213 EAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSpVIQQLRAQLAELEAELAELSARYTPNHPD 292
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568994733 1104 LKQKDKKLKEVLLQVEDE-RKMAEQYKEQAEKGNTKVKQLKRQLEEAEEESQRINANRRK---LQRELDEATE 1172
Cdd:COG3206 293 VIALRAQIAALRAQLQQEaQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAElrrLEREVEVARE 365
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
769-967 |
1.06e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 769 LKAEMEDLVSSKDDVGKNVHELEKSKRALETQMEEMKTQLEELEDELQATEDAKLRLEVNMQALKGQFERDLQARDEQNE 848
Cdd:COG4942 39 LEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGR 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 849 EKR----------RQLQRQLHEYETELEDERKQRALAAAAKKKLEGDLKDLELQADSAIKGREEAIKQLRKLQAQMKDFQ 918
Cdd:COG4942 119 QPPlalllspedfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQ 198
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 568994733 919 RELDDARASRDEIFATSKENEKKAKSLEADLMQLQEDLAAAERARKQAD 967
Cdd:COG4942 199 KLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
361-726 |
1.22e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 46.44 E-value: 1.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 361 EEIAQKNNALKKIRELEGHISDLQEDLDSERAARNKAEKQKrdlgEELEALKTELEDTLDSTAT-QQELRAKREQEVTVL 439
Cdd:PRK11281 39 ADVQAQLDALNKQKLLEAEDKLVQQDLEQTLALLDKIDRQK----EETEQLKQQLAQAPAKLRQaQAELEALKDDNDEET 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 440 KKALDEET-RSHEAQVQEMRQKHTQAVEELTE-------QLEQFKRAKANLDKSKQTLEKENADLAG----------ELR 501
Cdd:PRK11281 115 RETLSTLSlRQLESRLAQTLDQLQNAQNDLAEynsqlvsLQTQPERAQAALYANSQRLQQIRNLLKGgkvggkalrpSQR 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 502 VLGQAKQ-----EVEHKKKKLEV--QLQDLqskcsdGERARAELSDKVHKLQNEVESVTGMLNEaegKAIKLAKDVASLG 574
Cdd:PRK11281 195 VLLQAEQallnaQNDLQRKSLEGntQLQDL------LQKQRDYLTARIQRLEHQLQLLQEAINS---KRLTLSEKTVQEA 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 575 SQLQDTQE-----LLQEETRQKLNVSTKLRQLEDERNSL-QD------QLDEEMEAKQNLERHVSTLNIQLSDSK----- 637
Cdd:PRK11281 266 QSQDEAARiqanpLVAQELEINLQLSQRLLKATEKLNTLtQQnlrvknWLDRLTQSERNIKEQISVLKGSLLLSRilyqq 345
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 638 -------KKLQDFASTI-----EVMEEGKKR---------LQKEMEGLSQQY-EEKAAAYDKLEKTKNRLqqeLDDLVVD 695
Cdd:PRK11281 346 qqalpsaDLIEGLADRIadlrlEQFEINQQRdalfqpdayIDKLEAGHKSEVtDEVRDALLQLLDERREL---LDQLNKQ 422
|
410 420 430
....*....|....*....|....*....|.
gi 568994733 696 LDNQRQLVSNLEKKQKkfdQLLAEEKNISSK 726
Cdd:PRK11281 423 LNNQLNLAINLQLNQQ---QLLSVSDSLQST 450
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
652-871 |
1.29e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 1.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 652 EGKKRLQKEMEGLSQQYEEKAAAYDKLEKTKNRLQQELDDLVVDLDNQRQLVSNLEKK-----------QKKFDQLLAEE 720
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQElaaleaelaelEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 721 KNISSKYADERDRAEAEAREKETKALSLARALEEALEAKEELERTNKMLKAEMEDLVSSKDDVGKNVHELEKSKRALETQ 800
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568994733 801 MEEMKTQLEELEDELQATEDAKLRLEVNMQAlkgqferdLQARDEQNEEKRRQLQRQLHEYETELEDERKQ 871
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAE--------LAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
451-708 |
1.42e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 46.16 E-value: 1.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 451 EAQVQEMRQKHTQAVEELTE--QLEQFKRAKANLDKsKQTLEKENADLAGELrvlgqaKQEVEhkkkKLEVQLQDLQSKC 528
Cdd:PHA02562 182 QIQTLDMKIDHIQQQIKTYNknIEEQRKKNGENIAR-KQNKYDELVEEAKTI------KAEIE----ELTDELLNLVMDI 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 529 SDGERARAELSDKVHKLQNEVESVTgmlneaegKAIKLAKD---VASLGSQLQDTQELLQEETRQKLNVSTKLRQLEDER 605
Cdd:PHA02562 251 EDPSAALNKLNTAAAKIKSKIEQFQ--------KVIKMYEKggvCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAI 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 606 NSLQDQLDEEMEakqnLERHVSTLNIQLSDSKKKLQDFASTIevmeegkKRLQKEMEGLSQQYEEKAAAYDKLEKTKNRL 685
Cdd:PHA02562 323 DELEEIMDEFNE----QSKKLLELKNKISTNKQSLITLVDKA-------KKVKAAIEELQAEFVDNAEELAKLQDELDKI 391
|
250 260
....*....|....*....|...
gi 568994733 686 QQELDDLVVDLDnQRQLVSNLEK 708
Cdd:PHA02562 392 VKTKSELVKEKY-HRGIVTDLLK 413
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
578-1045 |
1.50e-04 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 46.19 E-value: 1.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 578 QDTQELLQEETRQKLNVSTKLR------------QLEDERnsLQDQLDEEMEAKQNLERHVSTLNIQLSDSKKKLQDFAS 645
Cdd:PTZ00108 900 EDYKEFLESETLKEKDVIVDYRdystantvhftvKLNDGV--LEQWEEEGIEKVFKLKSTISTTNMVLFDENGKIKKYSD 977
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 646 TIEVMEE-GKKRLQkemeglsqqyeekaaAYdklEKTKNRLQQELDDLVVDLDNQRQLV-----SNLEKKQKKFDQLLAE 719
Cdd:PTZ00108 978 ALDILKEfYLVRLD---------------LY---KKRKEYLLGKLERELARLSNKVRFIkhvinGELVITNAKKKDLVKE 1039
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 720 -EKNISSKYADERDRAEAE--AREKETKALSLARALEEALEAKEELERTNKMLKAEMEDLvsSKDDVGKNVHELEKSKRA 796
Cdd:PTZ00108 1040 lKKLGYVRFKDIIKKKSEKitAEEEEGAEEDDEADDEDDEEELGAAVSYDYLLSMPIWSL--TKEKVEKLNAELEKKEKE 1117
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 797 LE----TQMEEM-KTQLEELEDELQATE--DAKLRLEVNMQALKGQFERDLQARDEQNEEKRRQLQRQLHEYETELEDER 869
Cdd:PTZ00108 1118 LEklknTTPKDMwLEDLDKFEEALEEQEevEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGN 1197
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 870 KQRALAAAAKKKLEGDLKDLELQADSAIKGREEAIKQLRKlqAQMKDFQRELDDARASRDEIFATSKENEKKAKSLEADL 949
Cdd:PTZ00108 1198 SKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKK--SSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAP 1275
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 950 MQLQEDLAAAERARKQADlekeelAEELASSLSGRNTLQDEKRRLEARIAQLEEELEEEQGNMEAMSDRVRKATLQAEQL 1029
Cdd:PTZ00108 1276 KRVSAVQYSPPPPSKRPD------GESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQS 1349
|
490
....*....|....*.
gi 568994733 1030 SNELATERSTAQKNES 1045
Cdd:PTZ00108 1350 SRLLRRPRKKKSDSSS 1365
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
323-547 |
1.59e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 1.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 323 DASDFHEQIADLQAQIAELKmqlaKKEEELQAALARLD--EEIAQKNNALKKIRELEGHISDLQEDLDSERAarnkaEKQ 400
Cdd:COG4913 219 EEPDTFEAADALVEHFDDLE----RAHEALEDAREQIEllEPIRELAERYAAARERLAELEYLRAALRLWFA-----QRR 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 401 KRDLGEELEALKTELEDTLDSTATQQELRAKREQEVTVLKKALDEETRSHEAQVQEMRQKHTQAVEELTEQLEQFKRAKA 480
Cdd:COG4913 290 LELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLA 369
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568994733 481 NLDkskQTLEKENADLAGELRVLGQAKQEVEHKKKKLEVQLQDLQSKCSDGERARAELSDKVHKLQN 547
Cdd:COG4913 370 ALG---LPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
296-692 |
1.59e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.91 E-value: 1.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 296 ISELEVRLKKEEKSRQELEKLKRKLEgdasDFHEQIADLQAQIAELKMQLAKKEEELQA--ALARLDEEIAQKNNALKKI 373
Cdd:COG4717 73 LKELEEELKEAEEKEEEYAELQEELE----ELEEELEELEAELEELREELEKLEKLLQLlpLYQELEALEAELAELPERL 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 374 RELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTELEDTLDSTATQQELRAKREQEVTVLKKALDEETRSHEAQ 453
Cdd:COG4717 149 EELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 454 VQEMRQKH-TQAVEELTEQLEQFKRAKA-------NLDKSKQTLEKENADLAGELRVLGQAKQEVEHKKKKLEVQLQDLQ 525
Cdd:COG4717 229 LEQLENELeAAALEERLKEARLLLLIAAallallgLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQ 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 526 SKCSDGERARAELSDKVHKLQNEVESVTGMLNEAEGKAIKLAKDVASLGSQLQDTQELLQEETRQKLNVSTKLRQLEDER 605
Cdd:COG4717 309 ALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELR 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 606 nslqdQLDEEMEAKQNLERHVSTLNIQLSDSKKKLQDFASTIEvmeegKKRLQKEMEGLSQQYEEKAAAYDKLEKTKNRL 685
Cdd:COG4717 389 -----AALEQAEEYQELKEELEELEEQLEELLGELEELLEALD-----EEELEEELEELEEELEELEEELEELREELAEL 458
|
....*..
gi 568994733 686 QQELDDL 692
Cdd:COG4717 459 EAELEQL 465
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
849-1100 |
1.89e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 1.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 849 EKRRQLQRQLHEYETELEDERKQRALAAAAKKKLEGDLKDLELQADsaikgreEAIKQLRKLQAQMKDFQRELddarasr 928
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIA-------ALARRIRALEQELAALEAEL------- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 929 deifatsKENEKKAKSLEADLMQLQEDLAAAERARKQADLEKEELAEELASSLSGRNTLQDEKRRLEARIAQLEEELEEE 1008
Cdd:COG4942 86 -------AELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRAD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1009 QGNMEAMSDRVRKATLQAEQLSNELATERSTAQKNESARQQLERQNKELRSKLQevegAVKAKLKSTVAALEAKIAQLEE 1088
Cdd:COG4942 159 LAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELA----AELAELQQEAEELEALIARLEA 234
|
250
....*....|..
gi 568994733 1089 QVEQEAREKQAA 1100
Cdd:COG4942 235 EAAAAAERTPAA 246
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
174-396 |
1.92e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 1.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 174 AAKKQELEEILHEMEARLEEEEDRGQQLQAERKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDIlvmDDQ 253
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI---AEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 254 NSKLSKERKLLEERVSDL--------------TTNLAEEEEKAKNLTKLKSKHESMISELEVRLKKEEKSRQELEKLKRK 319
Cdd:COG4942 96 RAELEAQKEELAELLRALyrlgrqpplalllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568994733 320 LEGDASDFHEQIADLQAQIAELKMQLAKKEEELQAALARLDEEIAQKNNALKKIRELEGHISDLQEDLDSERAARNK 396
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALK 252
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
122-340 |
2.43e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 2.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 122 QKIKERQQKAETELKELEQKHTQLAEEKTLLQEQLQAETELYAEAEEMRVRLAAKKQELE-EILHEMEARLEEEEDRGQQ 200
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEkEIAELRAELEAQKEELAEL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 201 LQAERKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDdilvMDDQNSKLSKERKLLEERVSDLTTNLAEEEE 280
Cdd:COG4942 110 LRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEE----LRADLAELAALRAELEAERAELEALLAELEE 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 281 KAKNLTKLKSKHESMISELEVRLKKEEKSRQELEKLKRKLEgdasdfhEQIADLQAQIAE 340
Cdd:COG4942 186 ERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELE-------ALIARLEAEAAA 238
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
514-1069 |
2.86e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.01 E-value: 2.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 514 KKKLEVQLQDLQSKCSDGERARAELSDKVHKLQNEVESVTGMLNEAEGKAIKLAKDVASLGSQLQDTQELLQEETRQKLN 593
Cdd:TIGR04523 119 KNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLK 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 594 VSTKLRQLE---DERNSLQDQLDEEMEAKQNLERHVSTLNIQLSDSKKKLQDFASTIEVMEEGKKRLQKEMEGLSQQYEE 670
Cdd:TIGR04523 199 LELLLSNLKkkiQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQ 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 671 KAAAYDKLEKTKNRLQQELDDL--VVDLDNQRQLVSNLEKKQKKFDQL---LAEEKNISSKYADERDRAEAEAREKETKA 745
Cdd:TIGR04523 279 NNKKIKELEKQLNQLKSEISDLnnQKEQDWNKELKSELKNQEKKLEEIqnqISQNNKIISQLNEQISQLKKELTNSESEN 358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 746 LSLARALEEALEAKEELERTNKMLKAEMEDLVSSKDDVGKNVHELEKSKRALETQMEEMKTQLEELEDELQATEDAKLRL 825
Cdd:TIGR04523 359 SEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKN 438
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 826 EVNMQALKGQfERDLQARDEQNEEKRRQLQRQLHEYETELEDERKqralaaaakkklegDLKDLELQADSAIKGREEAIK 905
Cdd:TIGR04523 439 NSEIKDLTNQ-DSVKELIIKNLDNTRESLETQLKVLSRSINKIKQ--------------NLEQKQKELKSKEKELKKLNE 503
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 906 QLRKLQAQMKDFQRELDDARASRDEIFATSKENEKKAKSLEADLMQLQEDL--AAAERARKQADLEKEELAEELASSLSG 983
Cdd:TIGR04523 504 EKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELkkENLEKEIDEKNKEIEELKQTQKSLKKK 583
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 984 RNTLQDEKRRLEARIAQLEEELEEEQGNMEAMSDRVRKATLQAEQLSNELATERSTAQKNESARQQLERQNKELRSKLQE 1063
Cdd:TIGR04523 584 QEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPE 663
|
....*.
gi 568994733 1064 VEGAVK 1069
Cdd:TIGR04523 664 IIKKIK 669
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
298-419 |
2.92e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 45.23 E-value: 2.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 298 ELEVRLKKEEKSRQELEKLKRKLEGDASDFHEQIADLQAQIAELKMQLAKKE---EELQAALARLDEEIAQKNNALKKIR 374
Cdd:COG2433 389 ELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDeriERLERELSEARSEERREIRKDREIS 468
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 568994733 375 ELEGHISDLQEDLDSEraaRNKAEKQKRDLGEELEALKTELEDTL 419
Cdd:COG2433 469 RLDREIERLERELEEE---RERIEELKRKLERLKELWKLEHSGEL 510
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
466-1068 |
2.94e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 45.28 E-value: 2.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 466 EELTEQLEQFKRAKANLDKSKQTLEkenaDLAGELRVLGQAKQEVEHKKKKLE---VQLQDLQSKCSDGERARAELSDKV 542
Cdd:PRK01156 152 KKILDEILEINSLERNYDKLKDVID----MLRAEISNIDYLEEKLKSSNLELEnikKQIADDEKSHSITLKEIERLSIEY 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 543 HKLQNEVEsvtgMLNEAEGKAIKLAKDVASLGSQLQDTQELLQEEtrqkLNVSTKLRQLEDERNSLQDqldEEMEAKQNL 622
Cdd:PRK01156 228 NNAMDDYN----NLKSALNELSSLEDMKNRYESEIKTAESDLSME----LEKNNYYKELEERHMKIIN---DPVYKNRNY 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 623 ERHVSTLNIQLSDSKKKLQDFASTIEVMEEGKKRLQkEMEGLSQQYEEKAAAYDKLEKtknrlqqELDDLVVDLDNQRQL 702
Cdd:PRK01156 297 INDYFKYKNDIENKKQILSNIDAEINKYHAIIKKLS-VLQKDYNDYIKKKSRYDDLNN-------QILELEGYEMDYNSY 368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 703 VSNLEKKQKKFDQLLAEEKNISSKYADERDRAEAEAREketkalslaraleealeakeelertnkmLKAEMEDLVSSKDD 782
Cdd:PRK01156 369 LKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDA----------------------------IKKELNEINVKLQD 420
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 783 VGKNVHELEKSKRALETQMEEMKTQLEEL------------------EDELQATEDAKLRLEVNMQALkgqfERDLQARD 844
Cdd:PRK01156 421 ISSKVSSLNQRIRALRENLDELSRNMEMLngqsvcpvcgttlgeeksNHIINHYNEKKSRLEEKIREI----EIEVKDID 496
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 845 EQNEEKRRQLQRQLHEYETELEDERKQRALAAAAKKKLEGDLKDLELQADSAikgrEEAIKQLRKLQAQMKDFQR-ELDD 923
Cdd:PRK01156 497 EKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKINELKDKHDKY----EEIKNRYKSLKLEDLDSKRtSWLN 572
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 924 ARASRD--EIFATSKENEKKAKSLEADLMQLQEDLAAAERARKQADLEKEELAEELASSLSGRNTLQDEKRRLEaRIAQL 1001
Cdd:PRK01156 573 ALAVISliDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIE-KLRGK 651
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568994733 1002 EEELEEEQGNMEAMSDRVRKATLQAEQLSNELATERSTAQKNESARQQLERQNKELRSKLQEVEGAV 1068
Cdd:PRK01156 652 IDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRI 718
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
259-666 |
3.03e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 45.33 E-value: 3.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 259 KERKLLEERVSDLTTNLAEEEEKaknLTKLKSKHESMISELEVRLKKEEKSRQELEKLKRKLE--GDASDFHEQIADLQA 336
Cdd:PRK04863 279 NERRVHLEEALELRRELYTSRRQ---LAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNlvQTALRQQEKIERYQA 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 337 QIAELKMQLAKKEEELQAALARLDEEIAQKNNALKKIRELEGHISDLQEDLDsERAARNKAEKQKRDLGEELEALKTELE 416
Cdd:PRK04863 356 DLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALD-VQQTRAIQYQQAVQALERAKQLCGLPD 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 417 DTLDS-TATQQELRAKrEQEVTVLKKALDEETRSHEAqvqeMRQKHTQAVEELTEQLEQFKRAKANlDKSKQTLEKenad 495
Cdd:PRK04863 435 LTADNaEDWLEEFQAK-EQEATEELLSLEQKLSVAQA----AHSQFEQAYQLVRKIAGEVSRSEAW-DVARELLRR---- 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 496 lAGELRVLGQAKQEVEHKKKKLEVQLQDLQskcsDGERARAELSDKVHKLQNEVESVTGMLNEAEGKAIKLAKDVASLG- 574
Cdd:PRK04863 505 -LREQRHLAEQLQQLRMRLSELEQRLRQQQ----RAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARe 579
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 575 --SQLQDTQELLQEETRQKLNVSTKLRQLEDERNSLQDQLDEEMEAKQNLERHVSTLniqlsdsKKKLQDFASTIEVMEE 652
Cdd:PRK04863 580 rrMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQL-------LERERELTVERDELAA 652
|
410
....*....|....
gi 568994733 653 GKKRLQKEMEGLSQ 666
Cdd:PRK04863 653 RKQALDEEIERLSQ 666
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
570-1193 |
3.27e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.11 E-value: 3.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 570 VASLGSQLQDTQELLQEET----RQKLNVSTKLRQLEDERNSLQDQLDEEMEAKQNLERHVSTLNIQLSDSKKKLQDFAS 645
Cdd:pfam15921 87 VKDLQRRLNESNELHEKQKfylrQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLE 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 646 TIEVMEEGKKRLQKEMEGLSQQ-------YEEKAAA------------YDKLEKTKNRLQQELDDLVVDLDN-----QRQ 701
Cdd:pfam15921 167 DSNTQIEQLRKMMLSHEGVLQEirsilvdFEEASGKkiyehdsmstmhFRSLGSAISKILRELDTEISYLKGrifpvEDQ 246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 702 LVSNLEKKQKKFDQLLAEEKNISSKYADERDRAEAEAREKETKALSLARALEEALEAKEELERT-NKMLKAEMEDLVSSk 780
Cdd:pfam15921 247 LEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNqNSMYMRQLSDLEST- 325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 781 ddVGKNVHELEKSKRALETQMEEMKTQLEELEDELQATEDAKLRLEVNMQALKGQFER---DLQARDEQNEEKRRQLQR- 856
Cdd:pfam15921 326 --VSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKllaDLHKREKELSLEKEQNKRl 403
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 857 ---------QLHEYETELEDERKQRALAAAAKKKLEGDLKDLELQADSAIKGREEAIKQLRKLQAQMKDFQRELddaRAS 927
Cdd:pfam15921 404 wdrdtgnsiTIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEML---RKV 480
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 928 RDEIFATSKENEKKAKSLEADLMQLQEDlaaaERARKQADLEKEELAEELASSLSGRNTLQDEKRRLeaRIAQLEEELEE 1007
Cdd:pfam15921 481 VEELTAKKMTLESSERTVSDLTASLQEK----ERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHL--RNVQTECEALK 554
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1008 EQgnMEAMSDRVRKATLQAEQLSNELATERSTAQKNESARQQLERQNKELRSKLQEVEgAVKAKLKSTVAALEAKIAQLE 1087
Cdd:pfam15921 555 LQ--MAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFK-ILKDKKDAKIRELEARVSDLE 631
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1088 -EQVE--QEAREKQAATKSLKQ-KDKKLKEVLLQVEDERKMAEQY-------KEQAEKGNTKVKQLKRQLEEAEEESQRI 1156
Cdd:pfam15921 632 lEKVKlvNAGSERLRAVKDIKQeRDQLLNEVKTSRNELNSLSEDYevlkrnfRNKSEEMETTTNKLKMQLKSAQSELEQT 711
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1157 -----------------------------------------------NANRRK---------LQRELDEATESNEAMGRE 1180
Cdd:pfam15921 712 rntlksmegsdghamkvamgmqkqitakrgqidalqskiqfleeamtNANKEKhflkeeknkLSQELSTVATEKNKMAGE 791
|
730
....*....|...
gi 568994733 1181 VNALKSKLRRGNE 1193
Cdd:pfam15921 792 LEVLRSQERRLKE 804
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1039-1190 |
3.61e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 3.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1039 TAQKNESARQQLERQNKELRSKLQEVEGAVKAKLKSTVAALEAKIAQLEEQVEQEAREKQAATKSLKQKDKKLKEvllQV 1118
Cdd:COG4913 246 DAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDA---LR 322
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568994733 1119 EDERKMAEQYKEQaekGNTKVKQLKRQLEEAEEESQRINANRRKLQRELDEATESNEAMGREVNALKSKLRR 1190
Cdd:COG4913 323 EELDELEAQIRGN---GGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAA 391
|
|
| PTZ00491 |
PTZ00491 |
major vault protein; Provisional |
1023-1180 |
3.80e-04 |
|
major vault protein; Provisional
Pssm-ID: 240439 [Multi-domain] Cd Length: 850 Bit Score: 45.01 E-value: 3.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1023 TLQAEQLSNELATERSTAQKNESARQQLERQNKELRSKLQevegavKAKLKSTVAALEAKIAQLEEQVEQEAREKQAATK 1102
Cdd:PTZ00491 645 TRDSLQKSVQLAIEITTKSQEAAARHQAELLEQEARGRLE------RQKMHDKAKAEEQRTKLLELQAESAAVESSGQSR 718
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1103 SlkQKDKKLKEVLLQVEDERKMAEqYKEQAEK--GNTKVKQLKRQLEEAEEESQRINANRRKLQRELDEaTESN------ 1174
Cdd:PTZ00491 719 A--EALAEAEARLIEAEAEVEQAE-LRAKALRieAEAELEKLRKRQELELEYEQAQNELEIAKAKELAD-IEATkferiv 794
|
....*.
gi 568994733 1175 EAMGRE 1180
Cdd:PTZ00491 795 EALGRE 800
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
395-1138 |
3.90e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.96 E-value: 3.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 395 NKAEKQKRDLGEELEALKTELEDTLDSTATQQELRAKRE---QEVTVLKKALDEETRSHEAQVQEMRQKHTQAVEELTEQ 471
Cdd:TIGR00618 159 KAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAElltLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQT 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 472 LEQFKRAKANLDKSKQTLEKENADLAGELRVLGQAKQEVEHKKKKLEVQLQDLQSKCSDGERARAELSDKVHKLQNEVES 551
Cdd:TIGR00618 239 QQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQS 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 552 VTGMLNEAEGKAIKLAKDVASLGSQLQDTQELLQEETRqklnvstkLRQLEDERNSLQDQLDEEMEakqnLERHVSTLNI 631
Cdd:TIGR00618 319 KMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIH--------IRDAHEVATSIREISCQQHT----LTQHIHTLQQ 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 632 QLSDSKKKLQDFASTIEVMEEGKKRLQKEMEGLSQQYEEKAAAYDKLEKTKNRLQQELDDLVVDLDNQRQLVSNLEKKQK 711
Cdd:TIGR00618 387 QKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQ 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 712 KFDQLLAEEKNISSKYAderdraeaeaREKETKALSLARALEEALEAKEELERTNKmLKAEMEDLVSSKDDVGKnVHELE 791
Cdd:TIGR00618 467 SLKEREQQLQTKEQIHL----------QETRKKAVVLARLLELQEEPCPLCGSCIH-PNPARQDIDNPGPLTRR-MQRGE 534
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 792 KSKRALETQMEEMKTQLEELEDELQATEDAKLRLEVNMQALKGQferdLQARDEQNEEKRRQLQRQLHEYETELEDERKQ 871
Cdd:TIGR00618 535 QTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQC----DNRSKEDIPNLQNITVRLQDLTEKLSEAEDML 610
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 872 RALAAAAKKKLEGDLKDLELQADSAIKGREEAIKQLRKLQAQMK-DFQRELDDARASRDEIFATSKENEKKAKSLEADLM 950
Cdd:TIGR00618 611 ACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTlTQERVREHALSIRVLPKELLASRQLALQKMQSEKE 690
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 951 QLQEDLAAAErarkQADLEKEELAEELASSLSGRNTLQDEKRRLEARIAQLEEELEEEQGNMEAMSDRVRKA-TLQAEQL 1029
Cdd:TIGR00618 691 QLTYWKEMLA----QCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKArTEAHFNN 766
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1030 SNELATERSTAQKNESARQQLERQNKELRSK---LQEVEGAVKAKLKSTVAALEA---KIAQLEEQVEQEAREKQAATKS 1103
Cdd:TIGR00618 767 NEEVTAALQTGAELSHLAAEIQFFNRLREEDthlLKTLEAEIGQEIPSDEDILNLqceTLVQEEEQFLSRLEEKSATLGE 846
|
730 740 750
....*....|....*....|....*....|....*
gi 568994733 1104 LKQKDKKLKEVLLQVEDERKMAEQYKEQAEKGNTK 1138
Cdd:TIGR00618 847 ITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLNGI 881
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
122-692 |
4.73e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.57 E-value: 4.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 122 QKIKERQQKAETELKELEQKHTQLAEEKTLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEEDRgQQL 201
Cdd:TIGR00618 317 QSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLT-QKL 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 202 QAERKKMaQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNSKLSKERKLLEERVSDLTTNLAEEEEK 281
Cdd:TIGR00618 396 QSLCKEL-DILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQ 474
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 282 AKNltklkskhesmiseLEVRLKKEEKSRQELEKLKRKLEGDASDFHEQIADLQAqiaelKMQLAKKEEELQAALARLDE 361
Cdd:TIGR00618 475 LQT--------------KEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNP-----ARQDIDNPGPLTRRMQRGEQ 535
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 362 EIAQKNNALKKIR----ELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTELEDTLDSTATQQELR-----AKR 432
Cdd:TIGR00618 536 TYAQLETSEEDVYhqltSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEdmlacEQH 615
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 433 EQEVTVLKKALDEETRSHEAQVQEMRQKHTQAVEELTEQLEQFKRAKANLDKSKQTLEKENADLAgELRVLGQAKQEVEH 512
Cdd:TIGR00618 616 ALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQL-ALQKMQSEKEQLTY 694
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 513 KKKKLE---VQLQDLQSKCSDGERARAELSDKVHKLQNEVESVTGMLNEAEGKAIKLAKDVAslgSQLQDTQELLQEETR 589
Cdd:TIGR00618 695 WKEMLAqcqTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVL---KARTEAHFNNNEEVT 771
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 590 QKLNVSTKLRQLEDERNSLQDQLDEEMEAKQNLERHVST-----LNIQLSDSKKKLQDFASTIEVMEEgKKRLQKEMEGL 664
Cdd:TIGR00618 772 AALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQeipsdEDILNLQCETLVQEEEQFLSRLEE-KSATLGEITHQ 850
|
570 580
....*....|....*....|....*...
gi 568994733 665 SQQYEEKAAAYDKLEKTKNRLQQELDDL 692
Cdd:TIGR00618 851 LLKYEECSKQLAQLTQEQAKIIQLSDKL 878
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
788-1175 |
4.82e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 4.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 788 HELEKSKRALETQMEEMKTQLEELEDELQATEDAKLRLEVNmqalkgQFERDLQARDEQNEEKRRQLQRQLHEYETELED 867
Cdd:COG4717 91 AELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLY------QELEALEAELAELPERLEELEERLEELRELEEE 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 868 ERKQRALAAAAKKKLEGDLKDLELQA----DSAIKGREEAIKQLRKLQAQMKDFQRELDDARASRDEIFATSKENEKKAK 943
Cdd:COG4717 165 LEELEAELAELQEELEELLEQLSLATeeelQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEER 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 944 SLEADLMQLQEDLAAAERARKQADLEKEELAEELASSLSGRNTLQDEKRRLEARIAQLEEELEEEQGNMEAMSDRVRKAT 1023
Cdd:COG4717 245 LKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEEL 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1024 LQAEQLSNELATERStaqknesarQQLERQNKELRSKLQEVEGAVK-AKLKSTVAALEAKIAQLEEQVEQEAREKQAATK 1102
Cdd:COG4717 325 LAALGLPPDLSPEEL---------LELLDRIEELQELLREAEELEEeLQLEELEQEIAALLAEAGVEDEEELRAALEQAE 395
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568994733 1103 SLKQKDKKLKEVLLQVEDERKMAEQYKEQAEKGNTKVK--QLKRQLEEAEEESQRINANRRKLQRELDEATESNE 1175
Cdd:COG4717 396 EYQELKEELEELEEQLEELLGELEELLEALDEEELEEEleELEEELEELEEELEELREELAELEAELEQLEEDGE 470
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
329-455 |
4.95e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 43.80 E-value: 4.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 329 EQIADLQAQIAELKMQLA---KKEEELQAALARLDEEIAQKnnalkkirelEGHISDLQEDLDSERAARNKAEKQKRDLG 405
Cdd:PRK09039 53 SALDRLNSQIAELADLLSlerQGNQDLQDSVANLRASLSAA----------EAERSRLQALLAELAGAGAAAEGRAGELA 122
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 568994733 406 EELEALKTELEDTLDSTAT-QQELRAKREQeVTVLKKALD-EETRSHEAQVQ 455
Cdd:PRK09039 123 QELDSEKQVSARALAQVELlNQQIAALRRQ-LAALEAALDaSEKRDRESQAK 173
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
100-519 |
5.63e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.28 E-value: 5.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 100 KVKPLLQVTRQEEEMQAKEEEMQKIKERQQKAETELKELEQKHTQLAEEKTLLQEQLQAETELYAEAEEMRVRLAAKKQE 179
Cdd:PRK03918 274 EIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKR 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 180 LEEILHEMEARLEEEEDRGQQLQAERKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNSKLSK 259
Cdd:PRK03918 354 LEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKK 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 260 E--------RKLLEERVSDLttnLAEEEEKAKNLTKLKSKHESMISELEVRLKKEEKSRQELEKLKRKLEgdasdFHEQI 331
Cdd:PRK03918 434 AkgkcpvcgRELTEEHRKEL---LEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKE-----LAEQL 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 332 ADLQAQIAELKMQLAKKE----EELQAALARLDEEIAQKNNALKKIRELEGHISDLQEDLDSERAARNKAEKQKRDLG-- 405
Cdd:PRK03918 506 KELEEKLKKYNLEELEKKaeeyEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGfe 585
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 406 ---------EELEALKTELEDTLDSTATQQELRAKREQEVTVLKKALDE------ETRSHEAQVQEMRQKHTQ-AVEELT 469
Cdd:PRK03918 586 sveeleerlKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEElaetekRLEELRKELEELEKKYSEeEYEELR 665
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 568994733 470 EQLEQFKRAKANLDKSKQTLEKENADLAGELRVLGQAKQEVEHKKKKLEV 519
Cdd:PRK03918 666 EEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEK 715
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
580-1155 |
6.05e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.19 E-value: 6.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 580 TQELLQEETRQKLNVSTKLRQLEDERNSLQDQLDEEMEAKQNLERHVSTLNIQLSDSKKKLQDFAStIEVMEEGKKRLQK 659
Cdd:TIGR00618 274 AQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSS-IEEQRRLLQTLHS 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 660 EMEGLSQQYEEKAAAYDKLEKTKN------RLQQELDDLVVDLDNQRQLVSNLEKKQKKFDQLLAEEKNISSKYADERDR 733
Cdd:TIGR00618 353 QEIHIRDAHEVATSIREISCQQHTltqhihTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQ 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 734 AEAEAREKETKALSLARALEEALEAKEELERTNKMLKAEMEDLvSSKDDVGKNVHELEKSKRALETQMEEMKTQLEELED 813
Cdd:TIGR00618 433 QELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQL-QTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCI 511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 814 ELQATEDAKLRLEVNMQALKG------QFERDLQARDEQNEEKRRQLQRQLHEYETELEDERKQRALAAAAKKKLEGDLK 887
Cdd:TIGR00618 512 HPNPARQDIDNPGPLTRRMQRgeqtyaQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQN 591
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 888 DLELQADSAIKGREEAIKQLRKLQAQMKDFQRELDDARASrdeifATSKENEKKAKSLEADLMQLQEDLAAaERARKQAD 967
Cdd:TIGR00618 592 ITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVR-----LHLQQCSQELALKLTALHALQLTLTQ-ERVREHAL 665
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 968 LEKEELAEELASSLSGRNTLQDEKRRLeariAQLEEELEEEQGNMEAMSDRVRKATLQAEQLSNELATERSTAQKNESAR 1047
Cdd:TIGR00618 666 SIRVLPKELLASRQLALQKMQSEKEQL----TYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDAL 741
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1048 QQLERQNKEL-RSKLQEVEGAVKAKLKSTVAALE--AKIAQLEEQVEQEAREKQAATKSLKQK--------DKKLKEVLL 1116
Cdd:TIGR00618 742 NQSLKELMHQaRTVLKARTEAHFNNNEEVTAALQtgAELSHLAAEIQFFNRLREEDTHLLKTLeaeigqeiPSDEDILNL 821
|
570 580 590
....*....|....*....|....*....|....*....
gi 568994733 1117 QVEDERKMAEQYKEQAEKGNTKVKQLKRQLEEAEEESQR 1155
Cdd:TIGR00618 822 QCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQ 860
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
330-537 |
6.72e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.67 E-value: 6.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 330 QIADLQAQIAELKMQLAKKEEELQAALARLDEEIAQKNNALKKIRELEGHISDLQEDLDserAARNKAEKQKRDLGEELE 409
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIA---EAEAEIEERREELGERAR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 410 ALKTE------LEDTLDSTATQQELrakreQEVTVLKKALDEETRSHEaQVQEMRQKHTQAVEELTEQLEQFKRAKANLD 483
Cdd:COG3883 94 ALYRSggsvsyLDVLLGSESFSDFL-----DRLSALSKIADADADLLE-ELKADKAELEAKKAELEAKLAELEALKAELE 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 568994733 484 KSKQTLEKENADLAGELRVLGQAKQEVEHKKKKLEVQLQDLQSKCSDGERARAE 537
Cdd:COG3883 168 AAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAA 221
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
573-796 |
6.76e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 6.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 573 LGSQLQDTQELLQEETRQKLNVSTKLRQLEDERNSLQDQLDEEMEAKQNLERHVSTLNIQLSDSKKKLQDFASTIEVMEE 652
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 653 GKKRLQKEMEGLSQQYEEKAAAYDKLEKTKNRL----QQELDDLVVDLDNQRQLVSNLEKKQKKFDQLLAEEKNISSKYA 728
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQPPLAlllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568994733 729 DERDRAEAEAREKETKALSLARALEEALEAKEELERTNKMLKAEMEDLVSSKDDVGKNVHELEKSKRA 796
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
425-862 |
7.24e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.94 E-value: 7.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 425 QQELRAKREQEVTVLKKALDEETRSHEAQ--VQEMRQKHTQAVEELTEQLEQFKRAKANLDKSKQTLEKENADLAGELRV 502
Cdd:pfam05483 232 KKEINDKEKQVSLLLIQITEKENKMKDLTflLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMST 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 503 LGQAKQEVEHKKKKLEVQLQDLQSKCSDGERARAELSDKVHKLQNEVESVTGMLNEAEGKAIKLAKDVASLGSQLQDTQE 582
Cdd:pfam05483 312 QKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSS 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 583 LLQEETRQKLNVSTKLRQLED---ERNSLQDQLDEEMEAKQNLERHVSTLNIQLSDSKKKLQDFASTIEVMEEGKKRLQK 659
Cdd:pfam05483 392 ELEEMTKFKNNKEVELEELKKilaEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLK 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 660 EMEGLSQQYE-------EKAAAYDKLEKTKNRLQQELDDLVVDLDNQRQLVSNLEKKQ----KKFDQLLAEEKNISSKYA 728
Cdd:pfam05483 472 EVEDLKTELEkeklkniELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEermlKQIENLEEKEMNLRDELE 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 729 DERDRAEAEAREKETKALSLARALEEALEAKEELERTNKMLKAEMEDLVSSKDDVGKNVHELEKSKRALETQMEEMKTQL 808
Cdd:pfam05483 552 SVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQL 631
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 568994733 809 EELEDELQatedaklRLEVNMQALKGQFERDLQARDEQNEEKRRQLQRQLHEYE 862
Cdd:pfam05483 632 NAYEIKVN-------KLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVE 678
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
329-687 |
7.63e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.17 E-value: 7.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 329 EQIADLQAQIAELKMQLAKKEEELQAALARLDEEIAQKNNALKKIRELEGHISDLQEDLDseraarnkaEKQKRDLgeel 408
Cdd:COG3096 347 EKIERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALD---------VQQTRAI---- 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 409 ealkteledtldstATQQELRAKRE-QEVTVLKKALDEETRSHEAQVQEMRQKHTQAVEELTEQLEQFKRAKANLDKSKQ 487
Cdd:COG3096 414 --------------QYQQAVQALEKaRALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYE 479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 488 TLEKenadLAGEL---RVLGQAKQEVEH--KKKKLEVQLQDLQSKCSDGERARAElsdkvhklQNEVESVTGMLNEAEGK 562
Cdd:COG3096 480 LVCK----IAGEVersQAWQTARELLRRyrSQQALAQRLQQLRAQLAELEQRLRQ--------QQNAERLLEEFCQRIGQ 547
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 563 AIKLAKDVASLGSQLQDTQELLQEETRQKLNVSTKLRQLEDERNSLQDQLDEEMEAKQNLERHVSTLNIQLSdskkklQD 642
Cdd:COG3096 548 QLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALERLREQSG------EA 621
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 568994733 643 FASTIEVMEEGKKRLQKEMEgLSQQYEEKAAAYDKLEKTKNRLQQ 687
Cdd:COG3096 622 LADSQEVTAAMQQLLERERE-ATVERDELAARKQALESQIERLSQ 665
|
|
| AAA_13 |
pfam13166 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
350-544 |
7.94e-04 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.
Pssm-ID: 463796 [Multi-domain] Cd Length: 712 Bit Score: 43.90 E-value: 7.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 350 EELQAALAR-LDEEIAQKNNALKK-IRELEGHISDLQEDLDSeRAARNKAEKQKRDLGEELEALKTELEDTLDSTatQQE 427
Cdd:pfam13166 267 AERKAALEAhFDDEFTEFQNRLQKlIEKVESAISSLLAQLPA-VSDLASLLSAFELDVEDIESEAEVLNSQLDGL--RRA 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 428 LRAKREQEVTV--LKKALDEETRSHEAQVQ---------EMRQKHTQAVEELTEQLEQF--KRAKANLDKskqtLEKENA 494
Cdd:pfam13166 344 LEAKRKDPFKSieLDSVDAKIESINDLVASineliakhnEITDNFEEEKNKAKKKLRLHlvEEFKSEIDE----YKDKYA 419
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 568994733 495 DLAGELRVLGQAKQEVEHKKKKLEVQLQDLQSKCSDGERARAELSDKVHK 544
Cdd:pfam13166 420 GLEKAINSLEKEIKNLEAEIKKLREEIKELEAQLRDHKPGADEINKLLKA 469
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
306-508 |
8.75e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.60 E-value: 8.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 306 EEKSRQELEKLKRKLEGDASDFHEQIADLQAQIAELKMQLAKKEEeLQAALARLDEEIAQKNNALKKIRELEGHISDLQE 385
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAE-LQEELEELEEELEELEAELEELREELEKLEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 386 DLDSERAaRNKAEKQKRDLGEELEALKTELEDTldstATQQELRAKREQEVTVLKKALDEETRSHEAQVQEMRQKHTQAV 465
Cdd:COG4717 127 LLPLYQE-LEALEAELAELPERLEELEERLEEL----RELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEEL 201
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 568994733 466 EELTEQLEQFKRAKANLDKSKQTLEKENADLAGELRVLGQAKQ 508
Cdd:COG4717 202 EELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEER 244
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
453-966 |
9.79e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 43.35 E-value: 9.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 453 QVQEMRQKHTQAVEELTEQLEQFKRAKANLDKSKQTLEKENADLAGELRVLGQAKQEVEHKKKKLEVQLQDLQSKCSDGE 532
Cdd:PRK01156 173 DVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKN 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 533 RARAELSDKVHKLQ------NEVESVTGMLNEAEGKA-----------IKLAKDVASLGSQLQDTQELLQ--EETRQKLN 593
Cdd:PRK01156 253 RYESEIKTAESDLSmeleknNYYKELEERHMKIINDPvyknrnyindyFKYKNDIENKKQILSNIDAEINkyHAIIKKLS 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 594 VSTKLRQLEDERNSLQDQLDEEMEAKQNLERHVSTLNIQLSDSKKKLQDFASTIEVM----EEGKKRLQKEMEGLSQQYE 669
Cdd:PRK01156 333 VLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMsafiSEILKIQEIDPDAIKKELN 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 670 EKAAAYDKLEKTKNRLQQELDDLVVDLDNQRQLVSNLEKKQK--KFDQLLAEEK--NISSKYADERDRAEAEAREKETKA 745
Cdd:PRK01156 413 EINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVcpVCGTTLGEEKsnHIINHYNEKKSRLEEKIREIEIEV 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 746 LSLaraleeALEAKEELERTNKMLKAEMEDLVSSKDDVGKNVHELEKSKRALETqMEEMKTQLEELEDELQAT--EDAKL 823
Cdd:PRK01156 493 KDI------DEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKINE-LKDKHDKYEEIKNRYKSLklEDLDS 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 824 RLEVNMQALKGQFERDLQARDEQNEEKRRQL---QRQLHEYETELEDERKQralaaaakkkLEGDLKDLELQADSAikgr 900
Cdd:PRK01156 566 KRTSWLNALAVISLIDIETNRSRSNEIKKQLndlESRLQEIEIGFPDDKSY----------IDKSIREIENEANNL---- 631
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568994733 901 EEAIKQLRKLQAQMKDFQRELDDAR---ASRDEIFATSKENEKKAKSLEADLMQL--QEDLAAAERARKQA 966
Cdd:PRK01156 632 NNKYNEIQENKILIEKLRGKIDNYKkqiAEIDSIIPDLKEITSRINDIEDNLKKSrkALDDAKANRARLES 702
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
122-321 |
1.01e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.47 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 122 QKIKERQQKAETELKELEQKH--TQLAEEKTLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED--R 197
Cdd:COG3206 185 PELRKELEEAEAALEEFRQKNglVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQspV 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 198 GQQLQAERKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVmddqnsKLSKERKLLEERVSDLTTNLAE 277
Cdd:COG3206 265 IQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILA------SLEAELEALQAREASLQAQLAQ 338
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 568994733 278 EEEKAKNLTKLKSKHESMISELEVrlkkeekSRQELEKLKRKLE 321
Cdd:COG3206 339 LEARLAELPELEAELRRLEREVEV-------ARELYESLLQRLE 375
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
446-1189 |
1.05e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.50 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 446 ETRSHEAQVQEMRQKHTQAVEELTEQLEQFKRAKANLDKSKQTLEKENADLAGELRVLGQAKQEVEHKKKKLEVQLQDLQ 525
Cdd:TIGR00606 196 QTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALK 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 526 SKCSDGERARAELSDKVHKLQNEVESVTGMLNEAEGKAIKlakdvaSLGSQLQDTQELLQEETRQKLNVSTKLRQLEDE- 604
Cdd:TIGR00606 276 SRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVR------EKERELVDCQRELEKLNKERRLLNQEKTELLVEq 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 605 -RNSLQDQLDEEMEAKQNLERHVSTLNIQL------SDSKKKLQDFAS-TIEVMEEGKKRLQKEMEGLSQQYEEKAAAYD 676
Cdd:TIGR00606 350 gRLQLQADRHQEHIRARDSLIQSLATRLELdgfergPFSERQIKNFHTlVIERQEDEAKTAAQLCADLQSKERLKQEQAD 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 677 KLEKTKNRLQQELDDLVVDLDNQrqlVSNLEKKQKKFDQLLAEEKNISSKyADERDRAEAEAREKETKALSLARALEEal 756
Cdd:TIGR00606 430 EIRDEKKGLGRTIELKKEILEKK---QEELKFVIKELQQLEGSSDRILEL-DQELRKAERELSKAEKNSLTETLKKEV-- 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 757 eakeelertnKMLKAEMEDLVSSKDDVGKNVHELEKSKraleTQMEEMKTQLEELEDELQATEDAKLRLEVNMQALKGQF 836
Cdd:TIGR00606 504 ----------KSLQNEKADLDRKLRKLDQEMEQLNHHT----TTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYF 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 837 ERDLQARD---------EQNEEKRRQLQRQLHEYETELEDERKQRALAAAAKKKLEGDL------KDLELQADSAIKGRE 901
Cdd:TIGR00606 570 PNKKQLEDwlhskskeiNQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLfdvcgsQDEESDLERLKEEIE 649
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 902 EAIKQLRKLQAQ---MKDFQRELDDARASR----DEIFATSKENEKKAKSLEADLMQLQEDLAAAERARKQADLEKEELA 974
Cdd:TIGR00606 650 KSSKQRAMLAGAtavYSQFITQLTDENQSCcpvcQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEML 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 975 EELASSLSGRNTLQDEKRRLEARIAQLEEELEEEQGNMEAmSDRVRKATLQAEQLSNELATERSTAQKNESARQQLERQN 1054
Cdd:TIGR00606 730 GLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEE-QETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKI 808
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1055 KELRSKLQEVEGAVKA----KLKSTVAALEAKIAQLEEQVEQEAREKQAATKSLKQKDKKLKEVLLQVEDERKMAEQYKE 1130
Cdd:TIGR00606 809 AQQAAKLQGSDLDRTVqqvnQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEE 888
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568994733 1131 QAEKGNTKVKQLKRQLEEAEEESQRINANRRKLQRELDEAT----ESNEAMGREVNALKSKLR 1189
Cdd:TIGR00606 889 QLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELIsskeTSNKKAQDKVNDIKEKVK 951
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
310-1080 |
1.14e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.40 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 310 RQELEKLKRKLEGDASDFHEQIADLQAQIAELKMQLAKK-------EEELQAA---LARLDEEIAQKnnalKKIRELEGH 379
Cdd:COG3096 280 RRELSERALELRRELFGARRQLAEEQYRLVEMARELEELsaresdlEQDYQAAsdhLNLVQTALRQQ----EKIERYQED 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 380 ISDLQEDLDSERAARNKAEKQKRDLGEELEA-------LKTELED---TLDSTAT-----QQELRAKRE-QEVTVLKKAL 443
Cdd:COG3096 356 LEELTERLEEQEEVVEEAAEQLAEAEARLEAaeeevdsLKSQLADyqqALDVQQTraiqyQQAVQALEKaRALCGLPDLT 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 444 DEETRSHEAQVQEMRQKHTQAVEELTEQLEQFKRAKANLDKSKQTLEKenadLAGEL---RVLGQAKQEVEH--KKKKLE 518
Cdd:COG3096 436 PENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCK----IAGEVersQAWQTARELLRRyrSQQALA 511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 519 VQLQDLQSKCSDGERARAElsdkvhklQNEVESVTGMLNEAEGKAIKLAKDVASLGSQLQDTQELLQEETRQKLNVSTKL 598
Cdd:COG3096 512 QRLQQLRAQLAELEQRLRQ--------QQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSEL 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 599 RQLEDERNSLQDQLDEEMEAKQNLERHVSTLNIQLSdskkklQDFASTIEVMEEGKKRLQKEMEgLSQQYEEKAAAYDKL 678
Cdd:COG3096 584 RQQLEQLRARIKELAARAPAWLAAQDALERLREQSG------EALADSQEVTAAMQQLLERERE-ATVERDELAARKQAL 656
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 679 EKTKNRLQQ-------EL----------------DDLVVD--------LDNQRQ--LVSNLEKKQKKFDQLlaeEKNISS 725
Cdd:COG3096 657 ESQIERLSQpggaedpRLlalaerlggvllseiyDDVTLEdapyfsalYGPARHaiVVPDLSAVKEQLAGL---EDCPED 733
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 726 KYADERDRAEAEAREKETKALSLARALEEALEAKE-----------ELERTNKM--LKAEMEDLVSSKDDVGKNVHELEK 792
Cdd:COG3096 734 LYLIEGDPDSFDDSVFDAEELEDAVVVKLSDRQWRysrfpevplfgRAAREKRLeeLRAERDELAEQYAKASFDVQKLQR 813
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 793 SKRAL----------------ETQMEEMKTQLEELEDELQATEDAKLRLEVNMQALKGQFE--RDLQAR-----DEQNEE 849
Cdd:COG3096 814 LHQAFsqfvgghlavafapdpEAELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQllNKLLPQanllaDETLAD 893
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 850 KRRQLQRQLHEYEtELEDERKQRALAAAAKKKLEGDLKDLELQADSAIKGREEAIKQLRKLQAQMKdfqrELDDARASRd 929
Cdd:COG3096 894 RLEELREELDAAQ-EAQAFIQQHGKALAQLEPLVAVLQSDPEQFEQLQADYLQAKEQQRRLKQQIF----ALSEVVQRR- 967
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 930 EIFATSKENEKKAKS------LEADLMQLQEDLAAAERARKQADLEKEELAEELASSLSGRNTLQDEKRRLEARIAQLee 1003
Cdd:COG3096 968 PHFSYEDAVGLLGENsdlnekLRARLEQAEEARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQELEEL-- 1045
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568994733 1004 eleeeqgNMEAMSDRVRKATLQAEQLSNELATERSTAQKNESARQQLERQNKELRSKLQEVEGAVKAKLKSTVAALE 1080
Cdd:COG3096 1046 -------GVQADAEAEERARIRRDELHEELSQNRSRRSQLEKQLTRCEAEMDSLQKRLRKAERDYKQEREQVVQAKA 1115
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
255-493 |
1.16e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.99 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 255 SKLSKERKLLEERVSDLTTNLAEEEEKAKNLTKLKSKHESMISELEVRLKkeeksrqELEKLKrKLEGDASDF------- 327
Cdd:PRK05771 75 EKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIE-------RLEPWG-NFDLDLSLLlgfkyvs 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 328 ------HEQIADLQAQIAELK----------------MQLAKKEEELQAALARLD---EEIAQKNNALKKIRELEGHISD 382
Cdd:PRK05771 147 vfvgtvPEDKLEELKLESDVEnveyistdkgyvyvvvVVLKELSDEVEEELKKLGferLELEEEGTPSELIREIKEELEE 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 383 LqedldseraarnkaEKQKRDLGEELEALKTELEDTLdsTATQQELRAKREQEVTVLKKALDEETRSHEAQVQEMRqkht 462
Cdd:PRK05771 227 I--------------EKERESLLEELKELAKKYLEEL--LALYEYLEIELERAEALSKFLKTDKTFAIEGWVPEDR---- 286
|
250 260 270
....*....|....*....|....*....|.
gi 568994733 463 qaVEELTEQLEQFKRAKANLDKSKQTLEKEN 493
Cdd:PRK05771 287 --VKKLKELIDKATGGSAYVEFVEPDEEEEE 315
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
401-542 |
1.30e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.84 E-value: 1.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 401 KRDLGEELEALKTELEDTLDstATQQELRAKREQEVTVLKKALDEETRSHEAQVQEMRQKHTQAVEELTEQLEQFKRAKA 480
Cdd:PRK12704 26 KKIAEAKIKEAEEEAKRILE--EAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLE 103
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568994733 481 NLDKSKQTLEKENADLAGELRVLGQAKQEVEHKKKKLEVQLQDLQSKCSdgERARAELSDKV 542
Cdd:PRK12704 104 LLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTA--EEAKEILLEKV 163
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
225-437 |
1.36e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 225 ARQKLQlekvTAEAKIK--KLEDDILVMDDQNSKLSKERKLLEERVSDLTTNLAEEEEKAKNLTKLKSKHESMISEL--E 300
Cdd:COG3206 187 LRKELE----EAEAALEefRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELlqS 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 301 VRLKKEEKSRQELEKLKRKLEGDASDFHEQIADLQAQIAELKMQLAkkeEELQAALARLDEEIAQknnALKKIRELEGHI 380
Cdd:COG3206 263 PVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQ---QEAQRILASLEAELEA---LQAREASLQAQL 336
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 568994733 381 SDLQEDLDSEraarNKAEKQKRDLGEELEALKTELEDTLdstATQQELRAKREQEVT 437
Cdd:COG3206 337 AQLEARLAEL----PELEAELRRLEREVEVARELYESLL---QRLEEARLAEALTVG 386
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
297-604 |
1.56e-03 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 42.21 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 297 SELEVRLK-KEEKSRQELEKLKRKLEGDASDFHEQIADLQAQIAELKMQLAKKEEELQAALARLDEEIAQKnnalkkiRE 375
Cdd:pfam00038 28 KLLETKISeLRQKKGAEPSRLYSLYEKEIEDLRRQLDTLTVERARLQLELDNLRLAAEDFRQKYEDELNLR-------TS 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 376 LEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKT-------ELEDTLDSTATQQELRAKREQEVTVLkkaldeetr 448
Cdd:pfam00038 101 AENDLVGLRKDLDEATLARVDLEAKIESLKEELAFLKKnheeevrELQAQVSDTQVNVEMDAARKLDLTSA--------- 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 449 sheaqVQEMRQKHTQAVEELTEQLEQFKRAKanLDKSKQTLEKENADlagelrvLGQAKQEV---EHKKKKLEVQLQDLQ 525
Cdd:pfam00038 172 -----LAEIRAQYEEIAAKNREEAEEWYQSK--LEELQQAAARNGDA-------LRSAKEEItelRRTIQSLEIELQSLK 237
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568994733 526 SKCSDGERARAELSDkvhKLQNEVESVTGMLNEAEGkaiKLAKDVASLGSQLQDTQELLQEETRQKLNVSTKLRQLEDE 604
Cdd:pfam00038 238 KQKASLERQLAETEE---RYELQLADYQELISELEA---ELQETRQEMARQLREYQELLNVKLALDIEIATYRKLLEGE 310
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
330-500 |
1.73e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.45 E-value: 1.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 330 QIADLQAQIAELKMQLAKKEEELQAALARLDEEIAQKNNALKKIRELEGHISDLQEDLDSERAARNKAEKQKrdlgeELE 409
Cdd:COG1579 18 ELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNK-----EYE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 410 ALKTELEdtldstaTQQELRAKREQEVTVLKKALDEetrsHEAQVQEMRQKHTQAVEELTEQLEQFKRAKANLDKSKQTL 489
Cdd:COG1579 93 ALQKEIE-------SLKRRISDLEDEILELMERIEE----LEEELAELEAELAELEAELEEKKAELDEELAELEAELEEL 161
|
170
....*....|.
gi 568994733 490 EKENADLAGEL 500
Cdd:COG1579 162 EAEREELAAKI 172
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
544-907 |
1.90e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 42.20 E-value: 1.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 544 KLQNEVESVTGMLNEAEGKAIKLAKDVASLGSQLQDTQELLQEETRQKLNVSTKLRQLEDERNSLQDQLDEEMEAKQNLE 623
Cdd:COG4372 7 KVGKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELN 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 624 RHVSTLNIQLSDSKKKLQDFASTIEVMEEGKKRLQKEMEGLSQQYEEKAAAYDKLEKTKNRLQQELDDLVVDLDNQRQLV 703
Cdd:COG4372 87 EQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEEL 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 704 SNLEKKQKKFDQLLAEEKNISSKYADERDRAEAEAREKETKALSLARALEEALEAKEELERTNKMLKAEMEDLVSSKDDV 783
Cdd:COG4372 167 AALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEE 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 784 GKNVHELEKSKRALETQMEEMKTQLEELEDELQATEDAKLRLEVNMQALKGQFERDLQARDEQNEEKRRQLQRQLHEYET 863
Cdd:COG4372 247 DKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAK 326
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 568994733 864 ELEDERKQRALAAAAKKKLEGDLKDLELQADSAIKGREEAIKQL 907
Cdd:COG4372 327 KLELALAILLAELADLLQLLLVGLLDNDVLELLSKGAEAGVADG 370
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
540-749 |
1.97e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.12 E-value: 1.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 540 DKVHKLQNEVESVTGMLNEAEGKAIKLAKDVASLGSQLQDTQELLQEETRQKLNVSTKLRQLEDERNSLQDQLDEEMEAK 619
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARAL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 620 QNLERHVSTLNIQLSDskKKLQDFASTIEVMEEGKKRLQKEMEGLSQQYEEKAAAYDKLEKTKNRLQQELDDLvvdldnq 699
Cdd:COG3883 96 YRSGGSVSYLDVLLGS--ESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAEL------- 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 568994733 700 RQLVSNLEKKQKKFDQLLAEEKNISSKYADERDRAEAEAREKETKALSLA 749
Cdd:COG3883 167 EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAA 216
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
122-243 |
2.04e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.51 E-value: 2.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 122 QKIKERQQKAETELKELEQKHTQLAEEKTLLQEQLQaetELYAEAE-EMRVRLAAKKQELEEILHE--MEARLEEEEDRG 198
Cdd:PRK00409 530 RELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEED---KLLEEAEkEAQQAIKEAKKEADEIIKElrQLQKGGYASVKA 606
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 568994733 199 QQLQAERKKMAQQMLDLEEQLEEEEAARQKLqleKVTAEAKIKKL 243
Cdd:PRK00409 607 HELIEARKRLNKANEKKEKKKKKQKEKQEEL---KVGDEVKYLSL 648
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
256-375 |
2.31e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 2.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 256 KLSKERKLLEERVSDLTTNLAEEEEKAKNLTKLKSKHESMISELEVRLKKEEKS-------------RQELEKLKRK--- 319
Cdd:COG1579 28 ELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQlgnvrnnkeyealQKEIESLKRRisd 107
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 568994733 320 LEGDASDFHEQIADLQAQIAELKMQLAKKEEELQAALARLDEEIAQKNNALKKIRE 375
Cdd:COG1579 108 LEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEA 163
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
317-537 |
2.53e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.74 E-value: 2.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 317 KRKLEGDASDFHEQIADLQAQIAELKMQLAKKEEELQAALARLDEEIAQKNNALKKIRELEGHISDLQEDLdserAARNK 396
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREEL----GERAR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 397 AEKQKRDLGEELEALK--TELEDTLDSTATQQELRAKREQEVTVLKKALdEETRSHEAQVQEMRQKHTQAVEELTEQLEQ 474
Cdd:COG3883 94 ALYRSGGSVSYLDVLLgsESFSDFLDRLSALSKIADADADLLEELKADK-AELEAKKAELEAKLAELEALKAELEAAKAE 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568994733 475 FKRAKANLDKSKQTLEKENADLAGELRVLGQAKQEVEHKKKKLEVQLQDLQSKCSDGERARAE 537
Cdd:COG3883 173 LEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAA 235
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
122-542 |
2.84e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.93 E-value: 2.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 122 QKIKERQQKAETELKELEQKHTQLAEEKTLLQEQLQAETELYAEAEEMrvrlaaKKQELEEILHEMEARLEEEEDRGQQL 201
Cdd:TIGR04523 253 TQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDL------NNQKEQDWNKELKSELKNQEKKLEEI 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 202 QAERKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNSKLSKERKLLEERVSDLTTNLAEEEEK 281
Cdd:TIGR04523 327 QNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKL 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 282 AKNL----TKLKSKHESMISELEVRLKKEEKSRQELEKLKRK----------LEGDASDFHEQIADLQAQIAELKMQLAK 347
Cdd:TIGR04523 407 NQQKdeqiKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQdsvkeliiknLDNTRESLETQLKVLSRSINKIKQNLEQ 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 348 KEEELQAALARLDEEIAQKNNALKKIRELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTELEDTLDSTATQQe 427
Cdd:TIGR04523 487 KQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDE- 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 428 lrakREQEVTVLKKALDEETRSHEaQVQEMRQKHTQAVEELTEQLEQFKRAKANLDKSKQTLEKENADLAGELRVLGQAK 507
Cdd:TIGR04523 566 ----KNKEIEELKQTQKSLKKKQE-EKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKK 640
|
410 420 430
....*....|....*....|....*....|....*
gi 568994733 508 QEVEHKKKKLEVQLQDLQSKCSDGERARAELSDKV 542
Cdd:TIGR04523 641 NKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKI 675
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
329-967 |
2.90e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.88 E-value: 2.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 329 EQIADLQAQIAELKMQLAKKEEELQAALaRLDEEIAQKNNALKKIRELEGHISDLQEDLDSER---------AARNKAEK 399
Cdd:TIGR00618 229 KHLREALQQTQQSHAYLTQKREAQEEQL-KKQQLLKQLRARIEELRAQEAVLEETQERINRARkaaplaahiKAVTQIEQ 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 400 QKRDLGEELEALKTELEDTLDSTATQQELRAKREQEVTVLKKALDEETR-SHEAQVQEMRQKHTQAVEELTEQLEQFKRA 478
Cdd:TIGR00618 308 QAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHiRDAHEVATSIREISCQQHTLTQHIHTLQQQ 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 479 KANLDKSKQTLEKENADLAGElrvlgQAKQEVEHKKKKlevqlqDLQSKCSDGERARAELSDKVHKLQNEVESVTGMLNE 558
Cdd:TIGR00618 388 KTTLTQKLQSLCKELDILQRE-----QATIDTRTSAFR------DLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKL 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 559 AEGKAIKLAKDVASLGSQLQDTQELLQEETRQKLNVSTKLRQLEDERNSLQDQLDE-EMEAKQNLERHVST-LNIQLSDS 636
Cdd:TIGR00618 457 EKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHpNPARQDIDNPGPLTrRMQRGEQT 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 637 KKKLQDFASTIE----VMEEGKKRLQKEMEGLSQQYEEKAAAYDKLEKTKNRLQQELDDLVVDLDNQRQLVSNLEKKQKK 712
Cdd:TIGR00618 537 YAQLETSEEDVYhqltSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHA 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 713 FDQLLAEEKNISSKYADERDRAEAEAREKETKALSLARALEEALEAKEELERTNKMLKAEMEDLVSSKddvgknvhelEK 792
Cdd:TIGR00618 617 LLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQK----------MQ 686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 793 SKRALETQMEEMKTQLEELEDELQATEDAKLRLEVNMQALKGQFERDLQARDEQNEEKRRQLQRQLHEYETELEDERKQR 872
Cdd:TIGR00618 687 SEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNN 766
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 873 ALAAAAKKKLEGDLKDLELQADSAIKGREEAIKQLRKLQAQMKDFQRELDDARASRDEIFATSKENEK-KAKSLEADLMQ 951
Cdd:TIGR00618 767 NEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLsRLEEKSATLGE 846
|
650
....*....|....*.
gi 568994733 952 LQEDLAAAERARKQAD 967
Cdd:TIGR00618 847 ITHQLLKYEECSKQLA 862
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
199-377 |
3.03e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.35 E-value: 3.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 199 QQLQAERKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDIlvmDDQNSKLSKERKLLEERVSDL------- 271
Cdd:COG3883 26 SELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEI---AEAEAEIEERREELGERARALyrsggsv 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 272 --------TTNLAEEEEKAKNLTKLKSKHESMISELEVRLKKEEKSRQELEKLKRKLEGDASDFHEQIADLQAQIAELKM 343
Cdd:COG3883 103 syldvllgSESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEA 182
|
170 180 190
....*....|....*....|....*....|....
gi 568994733 344 QLAKKEEELQAALARLDEEIAQKNNALKKIRELE 377
Cdd:COG3883 183 LLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAA 216
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
673-900 |
3.30e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.54 E-value: 3.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 673 AAYDKLEKTKNR-LQQELDDLVVDLDNQRQLV---------------SNLEKKQKKFDQLLAEEKNISSKYADERDRAEA 736
Cdd:PHA02562 166 SEMDKLNKDKIReLNQQIQTLDMKIDHIQQQIktynknieeqrkkngENIARKQNKYDELVEEAKTIKAEIEELTDELLN 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 737 EAREKETKALSLARALEEALEAKEELERTNKMLK---------AEMEDLVSSKDDVGK---NVHELEKSKRALETQMEEm 804
Cdd:PHA02562 246 LVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKmyekggvcpTCTQQISEGPDRITKikdKLKELQHSLEKLDTAIDE- 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 805 ktqLEELEDELQATEDAKLRLEVNMQALKGQFER-DLQARDEQNEEKRRQLQRQLHEYETELEDERKQRALAAAAKKKLE 883
Cdd:PHA02562 325 ---LEEIMDEFNEQSKKLLELKNKISTNKQSLITlVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE 401
|
250
....*....|....*....
gi 568994733 884 GDLKDL--ELQADSAIKGR 900
Cdd:PHA02562 402 KYHRGIvtDLLKDSGIKAS 420
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
593-741 |
3.55e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 41.38 E-value: 3.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 593 NVSTKLRQLEDERNSLQDQLDEEMEAKQNLERHVSTLNIQLSDSKKKLQDfastievmeegkkrLQKEMEGLSQQY---E 669
Cdd:pfam06160 260 EAEEALEEIEERIDQLYDLLEKEVDAKKYVEKNLPEIEDYLEHAEEQNKE--------------LKEELERVQQSYtlnE 325
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568994733 670 EKAAAYDKLEKTKNRLQQELDDLVVDLDNQRQ----LVSNLEKKQKKFDQLLAEEKNISSKYADERDrAEAEAREK 741
Cdd:pfam06160 326 NELERVRGLEKQLEELEKRYDEIVERLEEKEVayseLQEELEEILEQLEEIEEEQEEFKESLQSLRK-DELEAREK 400
|
|
| CusB_dom_1 |
pfam00529 |
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli ... |
331-488 |
3.64e-03 |
|
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli can be divided into four different domains, the first three domains of the protein are mostly beta-strands and the fourth forms an all alpha-helical domain. This entry represents the first beta-domain (domain 1) of CusB and it is formed by the N and C-terminal ends of the polypeptide (residues 89-102 and 324-385). CusB is part of the copper-transporting efflux system CusCFBA. This domain can also be found in other membrane-fusion proteins, such as HlyD, MdtN, MdtE and AaeA. HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.
Pssm-ID: 425733 [Multi-domain] Cd Length: 322 Bit Score: 40.87 E-value: 3.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 331 IADLQAQIAELKMQLAKkeeeLQAALARLDEEIAQKNNALKKIRELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEA 410
Cdd:pfam00529 53 PTDYQAALDSAEAQLAK----AQAQVARLQAELDRLQALESELAISRQDYDGATAQLRAAQAAVKAAQAQLAQAQIDLAR 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 411 LKTELEDTL---DSTATQQELRAKREQEVTVLKKALD----EETRSHEAQVQEMRQKHTQAVEELTEQLEQFKRAKANLD 483
Cdd:pfam00529 129 RRVLAPIGGisrESLVTAGALVAQAQANLLATVAQLDqiyvQITQSAAENQAEVRSELSGAQLQIAEAEAELKLAKLDLE 208
|
....*
gi 568994733 484 KSKQT 488
Cdd:pfam00529 209 RTEIR 213
|
|
| PRK05035 |
PRK05035 |
electron transport complex protein RnfC; Provisional |
805-1101 |
3.97e-03 |
|
electron transport complex protein RnfC; Provisional
Pssm-ID: 235334 [Multi-domain] Cd Length: 695 Bit Score: 41.47 E-value: 3.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 805 KTQLEELEDELQATEDAKLRLEVNMQALkgqfERDLQARdeqnEEKRRQLQRQLHEYETELEDERKQRALAAAAKKKLEG 884
Cdd:PRK05035 435 KAEIRAIEQEKKKAEEAKARFEARQARL----EREKAAR----EARHKKAAEARAAKDKDAVAAALARVKAKKAAATQPI 506
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 885 DLKDLELQADSAIKGREEAikqlRKLQAqmkdfqrelddaRASRDEIFATSKENEKKAKsleadlmqlqedlAAAERARK 964
Cdd:PRK05035 507 VIKAGARPDNSAVIAAREA----RKAQA------------RARQAEKQAAAAADPKKAA-------------VAAAIARA 557
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 965 QAdlekeELAEELASSLSGRNTLQDEKRRLEARIAQLEEeleeeqgnmeamsdrvRKATLQAEQLSNELATERSTAQKNE 1044
Cdd:PRK05035 558 KA-----KKAAQQAANAEAEEEVDPKKAAVAAAIARAKA----------------KKAAQQAASAEPEEQVAEVDPKKAA 616
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568994733 1045 ----SARQQLERQNKELRSKLQEVEGAVKAKLKSTVAALEAKIAQL---EEQVEQEAREKQAAT 1101
Cdd:PRK05035 617 vaaaIARAKAKKAEQQANAEPEEPVDPRKAAVAAAIARAKARKAAQqqaNAEPEEAEDPKKAAV 680
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
451-741 |
4.09e-03 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 41.36 E-value: 4.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 451 EAQVQEMRQKHTQAVEELTEQLEQFKRAKANLDKSKQTLEKENADLAGELRVLGQAKQEVEHKKKKLEVQLQDLQSKCSD 530
Cdd:PRK04778 111 ESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTES 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 531 GERARA-----ELSDKVHKLQNEVESVTGMLNEAEGK-----------------------AIKLAKDVASLGSQLQDTQE 582
Cdd:PRK04778 191 GDYVEAreildQLEEELAALEQIMEEIPELLKELQTElpdqlqelkagyrelveegyhldHLDIEKEIQDLKEQIDENLA 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 583 LLqEETRQKlNVSTKLRQLEDERNSLQDQLDEEMEAKQNLERHVSTLniqlsdskkklqdfASTIEVMEEGKKRLQKEME 662
Cdd:PRK04778 271 LL-EELDLD-EAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTL--------------PDFLEHAKEQNKELKEEID 334
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 663 GLSQQY---EEKAAAYDKLEKTKNRLQQELDDLVVDLDNQRQ----LVSNLEKKQKKFDQLLAEEKNISSKYADERDrAE 735
Cdd:PRK04778 335 RVKQSYtlnESELESVRQLEKQLESLEKQYDEITERIAEQEIayseLQEELEEILKQLEEIEKEQEKLSEMLQGLRK-DE 413
|
....*.
gi 568994733 736 AEAREK 741
Cdd:PRK04778 414 LEAREK 419
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
353-505 |
4.94e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 40.72 E-value: 4.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 353 QAALARLDEEIAQKNNALKkireLE-GHISDLQEDLDSERAARNKAEkqkrdlgeeleALKTELEDTLDSTATQQELRAK 431
Cdd:PRK09039 52 DSALDRLNSQIAELADLLS----LErQGNQDLQDSVANLRASLSAAE-----------AERSRLQALLAELAGAGAAAEG 116
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568994733 432 REQEvtvLKKALDEE-TRSHEAQVQemrqkhtqaVEELTEQLEQFKRAKANLDKSKQTLEKENADLAGELRVLGQ 505
Cdd:PRK09039 117 RAGE---LAQELDSEkQVSARALAQ---------VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGR 179
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
898-1182 |
5.03e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 40.66 E-value: 5.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 898 KGREEAIKQLRKLQAQMKDFQRELDDARASRDEIFATSKENEKKAKSLEADLMQLQEDLAAAERARKQADLEKEELAEEL 977
Cdd:COG4372 31 EQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEA 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 978 ASSLSGRNTLQDEKRRLEARIAQLEEELEEEQGNMEAMSDRVRKATLQAEQLSNELATERSTAQ--KNESARQQLERQNK 1055
Cdd:COG4372 111 EELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQalSEAEAEQALDELLK 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1056 ELRSKLQEVEGAVKAKLKSTVAALEAKIAQLEEQVEQEAREKQAATKSLKQKDKKLKEVLLQVEDERKMAEQYKEQAEKG 1135
Cdd:COG4372 191 EANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVE 270
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 568994733 1136 NTKVKQLKRQLEEAEEESQRINANRRKLQRELDEATESNEAMGREVN 1182
Cdd:COG4372 271 KDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDAL 317
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
238-418 |
5.15e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.15 E-value: 5.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 238 AKIKKLEDDILVMDDQ----NSKLSKERKLLEERVSDLTTNLAEEEEKAKNLTKLKSKHESMISELEVRLKKEEKS---- 309
Cdd:PHA02562 174 DKIRELNQQIQTLDMKidhiQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDiedp 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 310 -------RQELEKLKRKLE---GDASDFHE---------QIADLQAQIAELK---MQLAKKEEELQAALARLDEEIAQKN 367
Cdd:PHA02562 254 saalnklNTAAAKIKSKIEqfqKVIKMYEKggvcptctqQISEGPDRITKIKdklKELQHSLEKLDTAIDELEEIMDEFN 333
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 568994733 368 NALKKIRELEGHISDLQEDLDSER-------AARNKAEKQKRDLGEELEALKTELEDT 418
Cdd:PHA02562 334 EQSKKLLELKNKISTNKQSLITLVdkakkvkAAIEELQAEFVDNAEELAKLQDELDKI 391
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
814-1222 |
5.49e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.28 E-value: 5.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 814 ELQATEDAKLRLEVNMQALKGQFERDLQARDEQNEEKRRQLQRQLHEY---ETELEDERKQRALAAAAKKKLEGDLKDLE 890
Cdd:PTZ00121 1034 EYGNNDDVLKEKDIIDEDIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFdakEDNRADEATEEAFGKAEEAKKTETGKAEE 1113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 891 LQADSAIKGREEAIKQLRklQAQMKDFQRELDDARASRDEIFATSKENEKKAKSLEADLMQLQEDLAAAERARKQADLEK 970
Cdd:PTZ00121 1114 ARKAEEAKKKAEDARKAE--EARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAE 1191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 971 EELAEELASSLSGRNTLQDEKRRLEARIAQLEEELEEEQGNMEAMSDRvRKATLQAEQLSNELATERSTAQKNESARQQL 1050
Cdd:PTZ00121 1192 ELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDA-EEAKKAEEERNNEEIRKFEEARMAHFARRQA 1270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1051 ERQNKELRsKLQEVEGAVKAKlkstvAALEAKIAQLEEQVEqEAREKQAATKSLKQKDKKLKEVLLQVEDERKMAEQYKE 1130
Cdd:PTZ00121 1271 AIKAEEAR-KADELKKAEEKK-----KADEAKKAEEKKKAD-EAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKK 1343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1131 QAEKGNTKVKQLKRQLEEAEEESQRINANRRKLQRELDEATESNEAMGREVNALKSKLRRGNEASFVPSRRAGGRRVIEN 1210
Cdd:PTZ00121 1344 AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEA 1423
|
410
....*....|..
gi 568994733 1211 TDGSEEEMDARD 1222
Cdd:PTZ00121 1424 KKKAEEKKKADE 1435
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
341-558 |
5.96e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.77 E-value: 5.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 341 LKMQLAKKEEELQAALARLDEEIAQknnALKKIRELEGHISDLQE--DLDSERAARNKAEKQKRDLGEELEALKTELEDT 418
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPE---LRKELEEAEAALEEFRQknGLVDLSEEAKLLLQQLSELESQLAEARAELAEA 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 419 ldsTATQQELRAKREQEVTVLKKAL-DEETRSHEAQVQEMRQKHTQAVEELTEQLEQFKRAKANLDKSKQTLEKENADLA 497
Cdd:COG3206 239 ---EARLAALRAQLGSGPDALPELLqSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRIL 315
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568994733 498 GELRVlgqAKQEVEHKKKKLEVQLQDLQSKCSDGERARAELSDkvhkLQNEVESVTGMLNE 558
Cdd:COG3206 316 ASLEA---ELEALQAREASLQAQLAQLEARLAELPELEAELRR----LEREVEVARELYES 369
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
900-1153 |
6.92e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 40.68 E-value: 6.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 900 REEAIKQLRKLQA-QMKDFQRELDDARASR--------DEIFATSKENEKKAKSLEADLMQLQEDlaAAERARKQADLEK 970
Cdd:PRK05771 18 KDEVLEALHELGVvHIEDLKEELSNERLRKlrslltklSEALDKLRSYLPKLNPLREEKKKVSVK--SLEELIKDVEEEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 971 EELAEELASSLSGRNTLQDEKRRLEARIAQleeeleeeqgnMEAMSD--------------RVRKATLQAEQLSNELATE 1036
Cdd:PRK05771 96 EKIEKEIKELEEEISELENEIKELEQEIER-----------LEPWGNfdldlslllgfkyvSVFVGTVPEDKLEELKLES 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 1037 RSTAQKNESARQQ--------LERQNKELRSKLQEVeGAVKAKLKSTVAALEAkIAQLEEQVEQEAREKQAATKSLKQKD 1108
Cdd:PRK05771 165 DVENVEYISTDKGyvyvvvvvLKELSDEVEEELKKL-GFERLELEEEGTPSEL-IREIKEELEEIEKERESLLEELKELA 242
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 568994733 1109 KKLKEVLLQVED----ERKMAEQYKEQAEKGNT----------KVKQLKRQLEEAEEES 1153
Cdd:PRK05771 243 KKYLEELLALYEyleiELERAEALSKFLKTDKTfaiegwvpedRVKKLKELIDKATGGS 301
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
250-490 |
9.18e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.11 E-value: 9.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 250 MDDQNSKLSKERKLLEERVSDLttNLAEEEEKAKNLTKLKSKHESM----ISELE----VRLKKEEKSRQELE---KLKR 318
Cdd:pfam17380 329 MDRQAAIYAEQERMAMEREREL--ERIRQEERKRELERIRQEEIAMeisrMRELErlqmERQQKNERVRQELEaarKVKI 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 319 KLEGDASDFHEQIADLQAQIAEL----KMQLAKKEEELQAALARLDEEIAQKNNALKKIRELEGHISDLQEDLDSERAAR 394
Cdd:pfam17380 407 LEEERQRKIQQQKVEMEQIRAEQeearQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDR 486
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 395 NKAEKQKRDLgeeleaLKTELEDTLDSTATQQELRAKREQEVTVLKKALDEETRSHEAQVQEMRQKHTQAVEELTEQLEQ 474
Cdd:pfam17380 487 KRAEEQRRKI------LEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRK 560
|
250
....*....|....*.
gi 568994733 475 FKRAKANLDKSKQTLE 490
Cdd:pfam17380 561 ATEERSRLEAMERERE 576
|
|
| ASY3-like |
pfam20435 |
Meiosis-specific protein ASY3-like; This entry represents a group of plant meiosis-specific ... |
268-373 |
9.31e-03 |
|
Meiosis-specific protein ASY3-like; This entry represents a group of plant meiosis-specific proteins, such as AtASY3 from Arabidopsis and PAIR3 from rice. They are coiled-coil domain proteins required for normal meiosis. PAIR3 is an axial element and part of the synaptonemal complex (SC) that forms between homologous chromosomes during meiosis. Members of this family are homologs of SCYP2 from vertebrates and fungal Red1/Rec10.
Pssm-ID: 466584 [Multi-domain] Cd Length: 793 Bit Score: 40.25 E-value: 9.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 268 VSDLTTNLAEEEEKAKNLTKLKSKHEsmiselEVRLK-KEEKSRQELEKLKRKLEGDASDFHEQIADLQAQIAELKMQLA 346
Cdd:pfam20435 667 LENIKSHIITEAGKTSNLAKTKRKHA------ETRLQeQEEKMRMIHEKFKDDVSHHLEDFKSTIEELEANQSELKGSIK 740
|
90 100
....*....|....*....|....*...
gi 568994733 347 KKEEELQAALARLDEEIAQK-NNALKKI 373
Cdd:pfam20435 741 KQRTSHQKLIAHFEGGIETKlDDATKRI 768
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
129-365 |
9.83e-03 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 40.06 E-value: 9.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 129 QKAETELKELEQKHTQLAEEKTLLQEQLQaetELYAeaeemrvrLAAKKQELEEilhemearleeeedrgqqLQAERKKM 208
Cdd:COG0497 168 RALKKELEELRADEAERARELDLLRFQLE---ELEA--------AALQPGEEEE------------------LEEERRRL 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 209 AQqmldLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNSKLSKERKLLEE---RVSDLTTN----------- 274
Cdd:COG0497 219 SN----AEKLREALQEALEALSGGEGGALDLLGQALRALERLAEYDPSLAELAERLESaliELEEAASElrryldslefd 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994733 275 ---LAEEEEKAKNLTKLKSKHESMISELevrLKKEEKSRQELEKLkrklegdaSDFHEQIADLQAQIAELKMQLAKKEEE 351
Cdd:COG0497 295 perLEEVEERLALLRRLARKYGVTVEEL---LAYAEELRAELAEL--------ENSDERLEELEAELAEAEAELLEAAEK 363
|
250
....*....|....*...
gi 568994733 352 L----QAALARLDEEIAQ 365
Cdd:COG0497 364 LsaarKKAAKKLEKAVTA 381
|
|
| |
