NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|568971177|ref|XP_006532060|]
View 

aryl-hydrocarbon-interacting protein-like 1 isoform X1 [Mus musculus]

Protein Classification

FKBP-type peptidyl-prolyl cis-trans isomerase( domain architecture ID 139723)

FKBP-type peptidyl-prolyl cis-trans isomerase acts as a PPIase that accelerates the folding of proteins

CATH:  3.10.50.40
EC:  5.2.1.8
Gene Ontology:  GO:0003755
SCOP:  4001062

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Spy super family cl27809
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 190-305 2.17e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG3914:

Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 55.38  E-value: 2.17e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971177 190 GNRLYKLGRYDQAATKYQEAIvclrnlqtKEKPWEVEWLklekmintliLNYCQCLLKKEEYYEVLEHTSDILRHHPGIV 269
Cdd:COG3914  119 GNLLLALGRLEEALAALRRAL--------ALNPDFAEAY----------LNLGEALRRLGRLEEAIAALRRALELDPDNA 180

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 568971177 270 KAYYMRARAHAEVWNAEEAKADLEKVLELEPSMRKA 305
Cdd:COG3914  181 EALNNLGNALQDLGRLEEAIAAYRRALELDPDNADA 216
FKBP_C super family cl19519
FKBP-type peptidyl-prolyl cis-trans isomerase;
35-94 1.28e-05

FKBP-type peptidyl-prolyl cis-trans isomerase;


The actual alignment was detected with superfamily member pfam00254:

Pssm-ID: 473184  Cd Length: 94  Bit Score: 43.34  E-value: 1.28e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971177   35 GSRVTFHFRTMKCDDerTVIDDSKQVGQPMSIIIGNMFKLEVWETLLTSMRLGEVAEFWC 94
Cdd:pfam00254   8 GDRVTVHYTGTLEDG--TVFDSSYDRGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTI 65
 
Name Accession Description Interval E-value
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 190-305 2.17e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 55.38  E-value: 2.17e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971177 190 GNRLYKLGRYDQAATKYQEAIvclrnlqtKEKPWEVEWLklekmintliLNYCQCLLKKEEYYEVLEHTSDILRHHPGIV 269
Cdd:COG3914  119 GNLLLALGRLEEALAALRRAL--------ALNPDFAEAY----------LNLGEALRRLGRLEEAIAALRRALELDPDNA 180

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 568971177 270 KAYYMRARAHAEVWNAEEAKADLEKVLELEPSMRKA 305
Cdd:COG3914  181 EALNNLGNALQDLGRLEEAIAAYRRALELDPDNADA 216
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
35-94 1.28e-05

FKBP-type peptidyl-prolyl cis-trans isomerase;


Pssm-ID: 459735  Cd Length: 94  Bit Score: 43.34  E-value: 1.28e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971177   35 GSRVTFHFRTMKCDDerTVIDDSKQVGQPMSIIIGNMFKLEVWETLLTSMRLGEVAEFWC 94
Cdd:pfam00254   8 GDRVTVHYTGTLEDG--TVFDSSYDRGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTI 65
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 266-309 3.54e-04

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 42.08  E-value: 3.54e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 568971177 266 PGIVKAYYMRARAHAEVWNAEEAKADLEKVLELEPSMRKAVLRE 309
Cdd:PLN03088  33 PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRK 76
TPR_11 pfam13414
TPR repeat;
190-210 2.92e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 35.14  E-value: 2.92e-03
                          10        20
                  ....*....|....*....|.
gi 568971177  190 GNRLYKLGRYDQAATKYQEAI 210
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKAL 21
 
Name Accession Description Interval E-value
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 190-305 2.17e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 55.38  E-value: 2.17e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971177 190 GNRLYKLGRYDQAATKYQEAIvclrnlqtKEKPWEVEWLklekmintliLNYCQCLLKKEEYYEVLEHTSDILRHHPGIV 269
Cdd:COG3914  119 GNLLLALGRLEEALAALRRAL--------ALNPDFAEAY----------LNLGEALRRLGRLEEAIAALRRALELDPDNA 180

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 568971177 270 KAYYMRARAHAEVWNAEEAKADLEKVLELEPSMRKA 305
Cdd:COG3914  181 EALNNLGNALQDLGRLEEAIAAYRRALELDPDNADA 216
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
190-322 2.65e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 50.78  E-value: 2.65e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971177 190 GNRLYKLGRYDQAATKYQEAIvclrnlqtKEKPWEVEwlklekmintLILNYCQCLLKKEEYYEVLEHTSDILRHHPGIV 269
Cdd:COG0457   15 GLAYRRLGRYEEAIEDYEKAL--------ELDPDDAE----------ALYNLGLAYLRLGRYEEALADYEQALELDPDDA 76

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 568971177 270 KAYYMRARAHAEVWNAEEAKADLEKVLELEPSMRKAvLRELRLLESRLADKQE 322
Cdd:COG0457   77 EALNNLGLALQALGRYEEALEDYDKALELDPDDAEA-LYNLGLALLELGRYDE 128
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
186-322 4.57e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 50.39  E-value: 4.57e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971177 186 LHGEGNRLYKLGRYDQAATKYQEAIvclrnlqtKEKPwevewlkleKMINTLiLNYCQCLLKKEEYYEVLEHTSDILRHH 265
Cdd:COG0457   45 LYNLGLAYLRLGRYEEALADYEQAL--------ELDP---------DDAEAL-NNLGLALQALGRYEEALEDYDKALELD 106

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 568971177 266 PGIVKAYYMRARAHAEVWNAEEAKADLEKVLELEPSMRKAvLRELRLLESRLADKQE 322
Cdd:COG0457  107 PDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADA-LYNLGIALEKLGRYEE 162
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 190-319 1.43e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 46.92  E-value: 1.43e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971177 190 GNRLYKLGRYDQAATKYQEAIvclrnlqtKEKPWEVEWLklekmintliLNYCQCLLKKEEYYEVLEHTSDILRHHPGIV 269
Cdd:COG4235   24 GRAYLRLGRYDEALAAYEKAL--------RLDPDNADAL----------LDLAEALLAAGDTEEAEELLERALALDPDNP 85

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 568971177 270 KAYYMRARAHAEVWNAEEAKADLEKVLELEPSmrkavLRELRLLESRLAD 319
Cdd:COG4235   86 EALYLLGLAAFQQGDYAEAIAAWQKLLALLPA-----DAPARLLEASIAE 130
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 139-300 2.38e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 46.88  E-value: 2.38e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971177 139 YEDLDELQKEPQPLVFLIELLQVEAPNEYQRETWNLNNEERMQAVPLLHGEGNRLYKLGRYDQAATKYQEAivclrnlqt 218
Cdd:COG5010   10 LPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA--------- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971177 219 kekpwevewLKLEKMINTLILNYCQCLLKKEEYYEVLEHTSDILRHHPGIVKAYYMRARAHAEVWNAEEAKADLEKVLEL 298
Cdd:COG5010   81 ---------LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151


                 ..
gi 568971177 299 EP 300
Cdd:COG5010  152 SP 153
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 194-322 3.74e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 47.80  E-value: 3.74e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971177 194 YKLGRYDQAATKYQ----------EAIVCLRNLQTKEKPWE--VEWL-KLEKMINTLILNYC---QCLLKKEEYYEVLEH 257
Cdd:COG2956   87 LKAGLLDRAEELLEklleldpddaEALRLLAEIYEQEGDWEkaIEVLeRLLKLGPENAHAYCelaELYLEQGDYDEAIEA 166

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568971177 258 TSDILRHHPGIVKAYYMRARAHAEVWNAEEAKADLEKVLELEPSmRKAVLRELRLLESRLADKQE 322
Cdd:COG2956  167 LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPD-YLPALPRLAELYEKLGDPEE 230
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
186-327 7.92e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 46.54  E-value: 7.92e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971177 186 LHGEGNRLYKLGRYDQAATKYQEAivclrnlqtkekpwevewLKLEKMINTLILNYCQCLLKKEEYYEVLEHTSDILRHH 265
Cdd:COG0457   79 LNNLGLALQALGRYEEALEDYDKA------------------LELDPDDAEALYNLGLALLELGRYDEAIEAYERALELD 140

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568971177 266 PGIVKAYYMRARAHAEVWNAEEAKADLEKVLELEPSMRKAVLRELRLLESRLADKQEEERQR 327
Cdd:COG0457  141 PDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLA 202
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
35-94 1.28e-05

FKBP-type peptidyl-prolyl cis-trans isomerase;


Pssm-ID: 459735  Cd Length: 94  Bit Score: 43.34  E-value: 1.28e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971177   35 GSRVTFHFRTMKCDDerTVIDDSKQVGQPMSIIIGNMFKLEVWETLLTSMRLGEVAEFWC 94
Cdd:pfam00254   8 GDRVTVHYTGTLEDG--TVFDSSYDRGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTI 65
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 190-300 3.62e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 42.87  E-value: 3.62e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971177 190 GNRLYKLGRYDQAATKYQEAIvclrnlqtKEKPWEVEWLklekmintliLNYCQCLLKKEEYYEVLEHTSDILRHHPGIV 269
Cdd:COG4783   45 GEILLQLGDLDEAIVLLHEAL--------ELDPDEPEAR----------LNLGLALLKAGDYDEALALLEKALKLDPEHP 106

                         90       100       110
                 ....*....|....*....|....*....|.
gi 568971177 270 KAYYMRARAHAEVWNAEEAKADLEKVLELEP 300
Cdd:COG4783  107 EAYLRLARAYRALGRPDEAIAALEKALELDP 137
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
179-325 3.65e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 44.14  E-value: 3.65e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971177 179 RMQAVPLLHGEGNRLYKLGRYDQAATKYQEAIvclrnlqtKEKPwevewlkleKMINTlilnYCQ---CLLKKEEYYEVL 255
Cdd:COG4785   69 LPDLAQLYYERGVAYDSLGDYDLAIADFDQAL--------ELDP---------DLAEA----YNNrglAYLLLGDYDAAL 127

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971177 256 EHTSDILRHHPGIVKAYYMRARAHAEVWNAEEAKADLEKVLELEPSMRKAVLReLRLLESRLADKQEEER 325
Cdd:COG4785  128 EDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALW-LYLAERKLDPEKALAL 196
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
193-304 3.94e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 41.69  E-value: 3.94e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971177 193 LYKLGRYDQAATKYQEAivclrnlqtkekpwevewLKLEKMINTLILNYCQCLLKKEEYYEVLEHTSdILRHHPGIVKAY 272
Cdd:COG3063    2 YLKLGDLEEAEEYYEKA------------------LELDPDNADALNNLGLLLLEQGRYDEAIALEK-ALKLDPNNAEAL 62

                         90       100       110
                 ....*....|....*....|....*....|..
gi 568971177 273 YMRARAHAEVWNAEEAKADLEKVLELEPSMRK 304
Cdd:COG3063   63 LNLAELLLELGDYDEALAYLERALELDPSALR 94
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
166-308 6.29e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 43.75  E-value: 6.29e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971177 166 EYQRETWNLNNEERMQAVPLLHGEGNRLYKLGRYDQAATKYQEAIVCLRNLQTKEKPWEVEWL-KLEKMINTLILNYcqc 244
Cdd:COG4785    7 ALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALpDLAQLYYERGVAY--- 83

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568971177 245 lLKKEEYYEVLEHTSDILRHHPGIVKAYYMRARAHAEVWNAEEAKADLEKVLELEPSMRKAVLR 308
Cdd:COG4785   84 -DSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLN 146
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 193-312 1.92e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 40.36  E-value: 1.92e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971177 193 LYKLGRYDQAATKYQEAIVclrnlQTKEKPWEVEWLklekmintliLNYCQCLLKKEEYYEVLEHTSDILRHHPG---IV 269
Cdd:COG1729    3 LLKAGDYDEAIAAFKAFLK-----RYPNSPLAPDAL----------YWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAP 67

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 568971177 270 KAYYMRARAHAEVWNAEEAKADLEKVLELEPSMRKAVLRELRL 312
Cdd:COG1729   68 DALLKLGLSYLELGDYDKARATLEELIKKYPDSEAAKEARARL 110
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 181-326 2.53e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 40.56  E-value: 2.53e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971177 181 QAVPLLHGEGNRLYKLGRYDQAATKYQEAIvclrnlqtKEKPWEVEWLklekmintliLNYCQCLLKKEEYYEVLEHTSD 260
Cdd:COG4783    2 ACAEALYALAQALLLAGDYDEAEALLEKAL--------ELDPDNPEAF----------ALLGEILLQLGDLDEAIVLLHE 63

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568971177 261 ILRHHPGIVKAYYMRARAHAEVWNAEEAKADLEKVLELEPSMRKAVLReLRLLESRLADKQEEERQ 326
Cdd:COG4783   64 ALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLR-LARAYRALGRPDEAIAA 128
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 266-309 3.54e-04

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 42.08  E-value: 3.54e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 568971177 266 PGIVKAYYMRARAHAEVWNAEEAKADLEKVLELEPSMRKAVLRE 309
Cdd:PLN03088  33 PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRK 76
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 190-322 6.82e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.87  E-value: 6.82e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971177 190 GNRLYKLGRYDQAATKYQEAI----VCLRNLqtkekpwevewlklekmintliLNYCQCLLKKEEYYEVLEHTSDILRHH 265
Cdd:COG2956  151 AELYLEQGDYDEAIEALEKALkldpDCARAL----------------------LLLAELYLEQGDYEEAIAALERALEQD 208

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 568971177 266 PGIVKAYYMRARAHAEVWNAEEAKADLEKVLELEPSMrkAVLRELRLLESRLADKQE 322
Cdd:COG2956  209 PDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD--DLLLALADLLERKEGLEA 263
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 244-326 9.73e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 39.17  E-value: 9.73e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971177 244 CLLKKEEYYEVLEHTSDILRHHPGIVKAYYMRARAHAEVWNAEEAKADLEKVLELEPSMRKAvLRELRLLESRLADKQEE 323
Cdd:COG5010   63 LYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNA-YSNLAALLLSLGQDDEA 141


                 ...
gi 568971177 324 ERQ 326
Cdd:COG5010  142 KAA 144
TPR_11 pfam13414
TPR repeat;
190-210 2.92e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 35.14  E-value: 2.92e-03
                          10        20
                  ....*....|....*....|.
gi 568971177  190 GNRLYKLGRYDQAATKYQEAI 210
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKAL 21
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 159-316 3.32e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 39.21  E-value: 3.32e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971177 159 LQVEAPNEYQRETWNLNNEERMQAVPLLHGEGNRLYKLGRYDQAATKYQEAIVCLRNLQTKEKPWEvEWLKLEKMINTLI 238
Cdd:COG3914    6 LLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAA-AALLLLAALLELA 84

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568971177 239 LNYcqcLLKKEEYYEVLEHTSDILRHHPGIVKAYYMRARAHAEVWNAEEAKADLEKVLELEPSMRKAVLRELRLLESR 316
Cdd:COG3914   85 ALL---LQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRL 159
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
190-332 4.53e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 37.94  E-value: 4.53e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568971177 190 GNRLYKLGRYDQAATKYQEAivclrnlqtkekpwevewlkLEKMINT---LILNYCQCLLKKEEYYEVLEHTSDILRHHP 266
Cdd:COG4700   96 ADALLELGRYDEAIELYEEA--------------------LTGIFADdphILLGLAQALFELGRYAEALETLEKLIAKNP 155

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568971177 267 GI--VKAYYMRARAHAEVWNAEEAKADLEKVLELEPSMrKAVLRELRLLESRlaDKQEEERQRCRSML 332
Cdd:COG4700  156 DFksSDAHLLYARALEALGDLEAAEAELEALARRYSGP-EARYRYAKFLARQ--GRTAEAKELLEEIL 220
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH