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Conserved domains on  [gi|568976128|ref|XP_006534428|]
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outer dynein arm-docking complex subunit 4 isoform X1 [Mus musculus]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 11419012)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  10517866|30708253
SCOP:  3001345

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
13-111 8.79e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 56.55  E-value: 8.79e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976128  13 SYMAEGERLYLCGEFTKAIQSFTNALHLQSGDKNCLVARSKCYLKMGDLEKSLNDAEASLRNDPTFCKGILQKAETLYTM 92
Cdd:COG0457   44 ALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLEL 123

                         90
                 ....*....|....*....
gi 568976128  93 GDFEFALVFYHRGYKLRPD 111
Cdd:COG0457  124 GRYDEAIEAYERALELDPD 142
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
290-493 5.67e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 54.24  E-value: 5.67e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976128 290 GSLQKAEKVLKKVLEWNQEEVpnkdelvgNLYSCIGNAQIELGQMVAALQSHRKDLEIAKEHdlpdakSRALDNIGRVFA 369
Cdd:COG0457   56 GRYEEALADYEQALELDPDDA--------EALNNLGLALQALGRYEEALEDYDKALELDPDD------AEALYNLGLALL 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976128 370 RVGKFQQAIDTWEEKIPLAKTTLEktwLFHEIGRCYLELDQAWQAQSYGEKSQQYAEEEGDLEWQLNASVLVAQAQVKLR 449
Cdd:COG0457  122 ELGRYDEAIEAYERALELDPDDAD---ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLA 198

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 568976128 450 DFESAVNNFEKALERAKLVHNNEAQQAIISALDDANKGIIEELK 493
Cdd:COG0457  199 LLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQ 242
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
13-111 8.79e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 56.55  E-value: 8.79e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976128  13 SYMAEGERLYLCGEFTKAIQSFTNALHLQSGDKNCLVARSKCYLKMGDLEKSLNDAEASLRNDPTFCKGILQKAETLYTM 92
Cdd:COG0457   44 ALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLEL 123

                         90
                 ....*....|....*....
gi 568976128  93 GDFEFALVFYHRGYKLRPD 111
Cdd:COG0457  124 GRYDEAIEAYERALELDPD 142
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
290-493 5.67e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 54.24  E-value: 5.67e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976128 290 GSLQKAEKVLKKVLEWNQEEVpnkdelvgNLYSCIGNAQIELGQMVAALQSHRKDLEIAKEHdlpdakSRALDNIGRVFA 369
Cdd:COG0457   56 GRYEEALADYEQALELDPDDA--------EALNNLGLALQALGRYEEALEDYDKALELDPDD------AEALYNLGLALL 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976128 370 RVGKFQQAIDTWEEKIPLAKTTLEktwLFHEIGRCYLELDQAWQAQSYGEKSQQYAEEEGDLEWQLNASVLVAQAQVKLR 449
Cdd:COG0457  122 ELGRYDEAIEAYERALELDPDDAD---ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLA 198

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 568976128 450 DFESAVNNFEKALERAKLVHNNEAQQAIISALDDANKGIIEELK 493
Cdd:COG0457  199 LLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQ 242
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 18-99 1.09e-03

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 41.89  E-value: 1.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976128   18 GERLYLCGEFTKAIQSFTNALHLQSgDKNCLVARSKCYLKMGDLEKSLNDAEASLRNDPTFCKGILQKAETLYTMGDFEF 97
Cdd:TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYAD 212


                  ..
gi 568976128   98 AL 99
Cdd:TIGR00990 213 AL 214
TPR_12 pfam13424
Tetratricopeptide repeat;
396-466 4.16e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 36.60  E-value: 4.16e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568976128  396 WLFHEIGRCYLELDQAWQAQSYGEKSQQYAEE--EGDLEWQLNASVLVAQAQVKLRDFESAVNNFEKALERAK 466
Cdd:pfam13424   4 TALNNLAAVLRRLGRYDEALELLEKALEIARRllGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAE 76
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
13-111 8.79e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 56.55  E-value: 8.79e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976128  13 SYMAEGERLYLCGEFTKAIQSFTNALHLQSGDKNCLVARSKCYLKMGDLEKSLNDAEASLRNDPTFCKGILQKAETLYTM 92
Cdd:COG0457   44 ALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLEL 123

                         90
                 ....*....|....*....
gi 568976128  93 GDFEFALVFYHRGYKLRPD 111
Cdd:COG0457  124 GRYDEAIEAYERALELDPD 142
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
290-493 5.67e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 54.24  E-value: 5.67e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976128 290 GSLQKAEKVLKKVLEWNQEEVpnkdelvgNLYSCIGNAQIELGQMVAALQSHRKDLEIAKEHdlpdakSRALDNIGRVFA 369
Cdd:COG0457   56 GRYEEALADYEQALELDPDDA--------EALNNLGLALQALGRYEEALEDYDKALELDPDD------AEALYNLGLALL 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976128 370 RVGKFQQAIDTWEEKIPLAKTTLEktwLFHEIGRCYLELDQAWQAQSYGEKSQQYAEEEGDLEWQLNASVLVAQAQVKLR 449
Cdd:COG0457  122 ELGRYDEAIEAYERALELDPDDAD---ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLA 198

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 568976128 450 DFESAVNNFEKALERAKLVHNNEAQQAIISALDDANKGIIEELK 493
Cdd:COG0457  199 LLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQ 242
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 288-466 7.32e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 53.96  E-value: 7.32e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976128 288 ADGSLQKAEKVLKKVLEWNQEEVPnkdelvgnLYSCIGNAQIELGQMVAALQSHRKDLEIAKEHDlpdaksRALDNIGRV 367
Cdd:COG2956   20 LNGQPDKAIDLLEEALELDPETVE--------AHLALGNLYRRRGEYDRAIRIHQKLLERDPDRA------EALLELAQD 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976128 368 FARVGKFQQAIDTWEEkipLAKTTLEKTWLFHEIGRCYLELDQAWQAQSYGEKSQQYAEEEGDLEWQLnasvlvAQAQVK 447
Cdd:COG2956   86 YLKAGLLDRAEELLEK---LLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCEL------AELYLE 156

                        170
                 ....*....|....*....
gi 568976128 448 LRDFESAVNNFEKALERAK 466
Cdd:COG2956  157 QGDYDEAIEALEKALKLDP 175
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
13-111 1.35e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 53.09  E-value: 1.35e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976128  13 SYMAEGERLYLCGEFTKAIQSFTNALHLQSGDKNCLVARSKCYLKMGDLEKSLNDAEASLRNDPTFCKGILQKAETLYTM 92
Cdd:COG0457   10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQAL 89

                         90
                 ....*....|....*....
gi 568976128  93 GDFEFALVFYHRGYKLRPD 111
Cdd:COG0457   90 GRYEEALEDYDKALELDPD 108
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
290-513 1.79e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 52.70  E-value: 1.79e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976128 290 GSLQKAEKVLKKVLEwnqeevpnKDELVGNLYSCIGNAQIELGQMVAALQSHRKDLEIAKEHdlpdakSRALDNIGRVFA 369
Cdd:COG0457   22 GRYEEAIEDYEKALE--------LDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------AEALNNLGLALQ 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976128 370 RVGKFQQAIDTWEEKIPLAKttlEKTWLFHEIGRCYLELDQAWQAQSYGEKSQQYAEEEGDLEWQLnasvlvAQAQVKLR 449
Cdd:COG0457   88 ALGRYEEALEDYDKALELDP---DDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNL------GIALEKLG 158

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568976128 450 DFESAVNNFEKALERAKLVHNNEAQQAIISALDDANKGIIEELKKTNYREILREKAERRESLPL 513
Cdd:COG0457  159 RYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAEL 222
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
13-124 4.57e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 51.55  E-value: 4.57e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976128  13 SYMAEGERLYLCGEFTKAIQSFTNALHLQSGDKNCLVARSKCYLKMGDLEKSLNDAEASLRNDPTFCKGILQKAETLYTM 92
Cdd:COG0457   78 ALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157

                         90       100       110
                 ....*....|....*....|....*....|..
gi 568976128  93 GDFEFALVFYHRGYKLRPDREFKVGIQKAQEA 124
Cdd:COG0457  158 GRYEEALELLEKLEAAALAALLAAALGEAALA 189
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
25-111 9.54e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.09  E-value: 9.54e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976128  25 GEFTKAIQSFTNALHLQSGDKNCLVARSKCYLKMGDLEKSLnDAEASLRNDPTFCKGILQKAETLYTMGDFEFALVFYHR 104
Cdd:COG3063    6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLER 84


                 ....*..
gi 568976128 105 GYKLRPD 111
Cdd:COG3063   85 ALELDPS 91
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 288-464 2.23e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 49.73  E-value: 2.23e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976128 288 ADGSLQKAEKVLKKVLEWNQEEVPNKDELvgnlysciGNAQIELGQMVAALQSHRKDLEIAKEHdlpdakSRALDNIGRV 367
Cdd:COG2956  122 QEGDWEKAIEVLERLLKLGPENAHAYCEL--------AELYLEQGDYDEAIEALEKALKLDPDC------ARALLLLAEL 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976128 368 FARVGKFQQAIDTWEEKIPLAKTTLEktwLFHEIGRCYLELDQAWQAQSYgekSQQYAEEEGDLEWQLNASVLVAQAQvk 447
Cdd:COG2956  188 YLEQGDYEEAIAALERALEQDPDYLP---ALPRLAELYEKLGDPEEALEL---LRKALELDPSDDLLLALADLLERKE-- 259

                        170
                 ....*....|....*..
gi 568976128 448 lrDFESAVNNFEKALER 464
Cdd:COG2956  260 --GLEAALALLERQLRR 274
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 18-111 4.54e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 49.61  E-value: 4.54e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976128  18 GERLYLCGEFTKAIQSFTNALHLQSGDKNCLVARSKCYLKMGDLEKSLNDAEASLRNDPTFCKGILQKAETLYTMGDFEF 97
Cdd:COG3914  119 GNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEE 198

                         90
                 ....*....|....
gi 568976128  98 ALVFYHRGYKLRPD 111
Cdd:COG3914  199 AIAAYRRALELDPD 212
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 21-110 7.72e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 46.49  E-value: 7.72e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976128  21 LYLCGEFTKAIQSFTNALHLQSGDKNCLVARSKCYLKMGDLEKSLNDAEASLRNDPTFCKGILQKAETLYTMGDFEFALV 100
Cdd:COG5010   64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143

                         90
                 ....*....|
gi 568976128 101 FYHRGYKLRP 110
Cdd:COG5010  144 ALQRALGTSP 153
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
321-463 1.85e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 46.54  E-value: 1.85e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976128 321 YSCIGNAQIELGQMVAALQSHRKDLEIAKEHdlpdakSRALDNIGRVFARVGKFQQAIDTWEEKIPLAkttLEKTWLFHE 400
Cdd:COG0457   11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDD------AEALYNLGLAYLRLGRYEEALADYEQALELD---PDDAEALNN 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568976128 401 IGRCYLELDQAWQAQSYGEKSQQYAEEEGDLEWQLnasvlvAQAQVKLRDFESAVNNFEKALE 463
Cdd:COG0457   82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNL------GLALLELGRYDEAIEAYERALE 138
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
14-126 2.94e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 45.68  E-value: 2.94e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976128  14 YMAEGERLYLCGEFTKAIQSFTNALHLQSGDKNCLVARSKCYLKMGDLEKSLNDAEASLRNDPTFCKGILQKAETLYTMG 93
Cdd:COG4785   76 YYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLG 155

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 568976128  94 DFEFALVFYHRGYKLRPD----------REFKVGIQKAQEAIN 126
Cdd:COG4785  156 RYELAIADLEKALELDPNdperalwlylAERKLDPEKALALLL 198
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 290-522 6.53e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 46.14  E-value: 6.53e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976128 290 GSLQKAEKVLKKVLEWNqeevPNKDELVGNLysciGNAQIELGQMVAALQSHRKDLEIAKEHdlpdakSRALDNIGRVFA 369
Cdd:COG3914   92 GRYEEALALYRRALALN----PDNAEALFNL----GNLLLALGRLEEALAALRRALALNPDF------AEAYLNLGEALR 157

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976128 370 RVGKFQQAIDTWEEKIPLAKTTLEktwLFHEIGRCYLELDQAWQAQSYGEKSqqYAEEEGDLEWQLNAsvLVAQAQVKLR 449
Cdd:COG3914  158 RLGRLEEAIAALRRALELDPDNAE---ALNNLGNALQDLGRLEEAIAAYRRA--LELDPDNADAHSNL--LFALRQACDW 230

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568976128 450 DFESAVNNFEKALERAKLVHNNEAQQAIISALDDANkgiieelkktnyREILREKAERRESLPLPSLPHPSLP 522
Cdd:COG3914  231 EVYDRFEELLAALARGPSELSPFALLYLPDDDPAEL------------LALARAWAQLVAAAAAPELPPPPNP 291
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 14-111 1.02e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 42.49  E-value: 1.02e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976128  14 YMAEGERLYLCGEFTKAIQSFTNALHLQSGDKNCLVARSKCYLKMGDLEKSLNDAEASLRNDPTFCKGILQKAETLYTMG 93
Cdd:COG4783    7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86

                         90
                 ....*....|....*...
gi 568976128  94 DFEFALVFYHRGYKLRPD 111
Cdd:COG4783   87 DYDEALALLEKALKLDPE 104
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 290-428 1.52e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 42.10  E-value: 1.52e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976128 290 GSLQKAEKVLKKVLEWNQEEVPnkdelvgnLYSCIGNAQIELGQMVAALQSHRKDLEIAKEHdlpdakSRALDNIGRVFA 369
Cdd:COG4783   18 GDYDEAEALLEKALELDPDNPE--------AFALLGEILLQLGDLDEAIVLLHEALELDPDE------PEARLNLGLALL 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 568976128 370 RVGKFQQAIDTWEEKIPLAKTTLEktwLFHEIGRCYLELDQAWQAQSYGEKSQQYAEEE 428
Cdd:COG4783   84 KAGDYDEALALLEKALKLDPEHPE---AYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 25-121 6.04e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 40.37  E-value: 6.04e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976128  25 GEFTKAIQSFTNALHLQSGDKNCLVARSKCYLKMGDLEKSLNDAEASLRNDPTFCKGILQKAETLYTMGDFEFALVFYHR 104
Cdd:COG4235   31 GRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQK 110

                         90
                 ....*....|....*..
gi 568976128 105 GYKLRPDREFKVGIQKA 121
Cdd:COG4235  111 LLALLPADAPARLLEAS 127
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 18-99 1.09e-03

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 41.89  E-value: 1.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976128   18 GERLYLCGEFTKAIQSFTNALHLQSgDKNCLVARSKCYLKMGDLEKSLNDAEASLRNDPTFCKGILQKAETLYTMGDFEF 97
Cdd:TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYAD 212


                  ..
gi 568976128   98 AL 99
Cdd:TIGR00990 213 AL 214
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 355-465 1.24e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 39.40  E-value: 1.24e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976128 355 DAKSRALDNIGRVFARVGKFQQAIDTWEEKIPLAKttlEKTWLFHEIGRCYLELDQAWQAQSYGEKSQQYAEEEGDLEWQ 434
Cdd:COG4783    1 AACAEALYALAQALLLAGDYDEAEALLEKALELDP---DNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLN 77

                         90       100       110
                 ....*....|....*....|....*....|.
gi 568976128 435 LnasvlvAQAQVKLRDFESAVNNFEKALERA 465
Cdd:COG4783   78 L------GLALLKAGDYDEALALLEKALKLD 102
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
38-111 1.77e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 40.38  E-value: 1.77e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568976128  38 LHLQSGDKNCLVARSKCYLKMGDLEKSLNDAEASLRNDPTFCKGILQKAETLYTMGDFEFALVFYHRGYKLRPD 111
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPD 74
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 13-113 3.52e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 39.71  E-value: 3.52e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976128  13 SYMAEGERLYLCGEFTKAIQSFTNALHLQSGDKNCLVARSKCYLKMGDLEKSLNDAEASLRNDPTFCKGILQKAETLYTM 92
Cdd:COG2956   10 GWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKA 89

                         90       100
                 ....*....|....*....|.
gi 568976128  93 GDFEFALVFYHRGYKLRPDRE 113
Cdd:COG2956   90 GLLDRAEELLEKLLELDPDDA 110
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 25-111 3.75e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 39.71  E-value: 3.75e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976128  25 GEFTKAIQSFTNALHLQSGDKNCLVARSKCYLKMGDLEKSLNDAEASLRNDPTFCKGILQKAETLYTMGDFEFALVFYHR 104
Cdd:COG2956  124 GDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALER 203


                 ....*..
gi 568976128 105 GYKLRPD 111
Cdd:COG2956  204 ALEQDPD 210
TPR_12 pfam13424
Tetratricopeptide repeat;
396-466 4.16e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 36.60  E-value: 4.16e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568976128  396 WLFHEIGRCYLELDQAWQAQSYGEKSQQYAEE--EGDLEWQLNASVLVAQAQVKLRDFESAVNNFEKALERAK 466
Cdd:pfam13424   4 TALNNLAAVLRRLGRYDEALELLEKALEIARRllGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAE 76
TPR_12 pfam13424
Tetratricopeptide repeat;
359-427 5.12e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 36.21  E-value: 5.12e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568976128  359 RALDNIGRVFARVGKFQQAIDTWEEKIPLAKTTLEKT-----WLFHEIGRCYLELDQAWQAQSYGEKSQQYAEE 427
Cdd:pfam13424   4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhpltaTTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_12 pfam13424
Tetratricopeptide repeat;
316-389 5.27e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 36.21  E-value: 5.27e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568976128  316 LVGNLYSCIGNAQIELGQMVAALQSHRKDLEIAKEHDLPD--AKSRALDNIGRVFARVGKFQQAIDTWEEKIPLAK 389
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLERALALAE 76
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 25-111 7.50e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 37.09  E-value: 7.50e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976128  25 GEFTKAIQSFTNALHLQSGDKNCLVARSKCYLKMGDLEKSLNDAEASLRNDPTFCKGILQKAETLYTMGDFEFALVFYHR 104
Cdd:COG4783   52 GDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEK 131


                 ....*..
gi 568976128 105 GYKLRPD 111
Cdd:COG4783  132 ALELDPD 138
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 238-389 8.11e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 37.63  E-value: 8.11e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976128 238 RQQKPIYARERDRKLMQEKWLRDRKRSPSQTAHYILKSLEDIDMLLtsgSADGSLQKAEKVLKKVLEWNqeevPNKDELV 317
Cdd:COG5010   19 KLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLY---NKLGDFEESLALLEQALQLD----PNNPELY 91

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568976128 318 GNLysciGNAQIELGQMVAALQSHRKDLEIAKEHdlpdakSRALDNIGRVFARVGKFQQAIDTWEEKIPLAK 389
Cdd:COG5010   92 YNL----ALLYSRSGDKDEAKEYYEKALALSPDN------PNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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