|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
652-1354 |
2.19e-26 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 117.85 E-value: 2.19e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 652 FVQIREAKTMVEEDLQ-RRLEEFEGEREQLQKVADAAAS-----------LEQQLEQVKLTLFQRDQQLAALQQEHL--- 716
Cdd:TIGR02168 215 YKELKAELRELELALLvLRLEELREELEELQEELKEAEEeleeltaelqeLEEKLEELRLEVSELEEEIEELQKELYala 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 717 ----DVIKQLTSTQEALQAKGQSLDDLHTRYDELQARLEELQREADSREDAIHFLQNEKIVLEVALQSAKSDKEELDRGA 792
Cdd:TIGR02168 295 neisRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 793 RRLEEDTEETSGLLEQLRQDLAVKSNQVE----HLQQETATLRKQMQKVKEQFVQ-QKVMVEAYRRDATSKDQLINELKA 867
Cdd:TIGR02168 375 EELEEQLETLRSKVAQLELQIASLNNEIErleaRLERLEDRRERLQQEIEELLKKlEEAELKELQAELEELEEELEELQE 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 868 TKKRLDSEMKELRQELIKLQGEKKTVEVEHSRLQKDMSLVHQQMAELEGHLQSVQ---KERDEMEIHL----QSLKFDKE 940
Cdd:TIGR02168 455 ELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKallKNQSGLSGILgvlsELISVDEG 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 941 QMIALTEA-NETLKKQIEELQQEAKKAITEQKQKMK----------RLGSDLSSAQKEMKTKH--------------KAY 995
Cdd:TIGR02168 535 YEAAIEAAlGGRLQAVVVENLNAAKKAIAFLKQNELgrvtflpldsIKGTEIQGNDREILKNIegflgvakdlvkfdPKL 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 996 ENAVS-ILSR-----RLQEALASKEATDAELN-------QLRAQ--STGGSSDPVLheKIRALEVELQNVGQSKilleKE 1060
Cdd:TIGR02168 615 RKALSyLLGGvlvvdDLDNALELAKKLRPGYRivtldgdLVRPGgvITGGSAKTNS--SILERRREIEELEEKI----EE 688
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1061 LQEVITMTSQELEESREKVLELEDEL-----------QESRGFRRKIKRLEESNKKLALELEHERGKLTGLGQSNAALRE 1129
Cdd:TIGR02168 689 LEEKIAELEKALAELRKELEELEEELeqlrkeleelsRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEE 768
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1130 HNSILETALAKREADLVQLNLQVQAVLQRKEEEDRQmkqlvqalqvsLEKEKMEVNSLKEQMAAARIEAGHNRRHFKAAT 1209
Cdd:TIGR02168 769 RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREA-----------LDELRAELTLLNEEAANLRERLESLERRIAATE 837
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1210 LELSEVKKELQAKEHLVQTLQAEVDELQIQDGKHSQEIAQFQTELAEARTQLQLLQKKLDEQMSQQPTGSQEMEDLKWEL 1289
Cdd:TIGR02168 838 RRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRREL 917
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568935679 1290 DQKEREIQSLKQQLDLTEQQGkkelegtQQTLQTIKSELEMVQEDLSETQKDKFM----LQAKVSELKN 1354
Cdd:TIGR02168 918 EELREKLAQLELRLEGLEVRI-------DNLQERLSEEYSLTLEEAEALENKIEDdeeeARRRLKRLEN 979
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
663-1339 |
4.58e-25 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 113.61 E-value: 4.58e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 663 EEDLQRR---LEEFEGEREQLQKVADAA---ASLEQQLEQVKLTLF-----QRDQQLAALQQEHLDVIKQLTSTQEALQA 731
Cdd:TIGR02168 185 RENLDRLediLNELERQLKSLERQAEKAeryKELKAELRELELALLvlrleELREELEELQEELKEAEEELEELTAELQE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 732 KGQSLDDLHTRYDELQARLEELQREADSREDAIHFLQNEKIVLEVALQSAKSDKEELDRGARRLEEDTEETSGLLEQLRQ 811
Cdd:TIGR02168 265 LEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 812 DLAVKSNQVEHLQQETATLRKQMQKVKEQFVQQKVMVEAYRRDATSKDQLINELKATKKRLDSEMKELRQELIKLQGE-- 889
Cdd:TIGR02168 345 KLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEie 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 890 ---KKTVEVEHSRLQKDMSLVHQQMAELEGH-------LQSVQKERDEMEIHLQSLKFDKEQMIALTEANETLKKQIEEL 959
Cdd:TIGR02168 425 ellKKLEEAELKELQAELEELEEELEELQEElerleeaLEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGF 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 960 QQEAKKAITEQKQKMKRLG--SDLSSAQKEmktkhkaYENAVSI-LSRRLQEALA-SKEATDAELNQLRAQSTGGSS--- 1032
Cdd:TIGR02168 505 SEGVKALLKNQSGLSGILGvlSELISVDEG-------YEAAIEAaLGGRLQAVVVeNLNAAKKAIAFLKQNELGRVTflp 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1033 -DPVLHEKIRALEVELQNVGQSKILLEKELQEVitmtsqelEESREKVLE-------LEDELQESRGFRRKIKRlEESNK 1104
Cdd:TIGR02168 578 lDSIKGTEIQGNDREILKNIEGFLGVAKDLVKF--------DPKLRKALSyllggvlVVDDLDNALELAKKLRP-GYRIV 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1105 KLALELEHERGKLTGlgqsnAALREHNSILETA-----LAKREADLVQLNLQVQAVLQRKEEEDRQMKQLVQALQVSLEK 1179
Cdd:TIGR02168 649 TLDGDLVRPGGVITG-----GSAKTNSSILERRreieeLEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEE 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1180 EKMEVNSLKEQMAAARIEAGHNRRHFKAATLELSEVKKELQAKEHLVQTLQAEVDELQIQDGKHSQEIAQFQTELAEART 1259
Cdd:TIGR02168 724 LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRE 803
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1260 QLQLLQKKLDEQMSQQPTGSQEMEDLKWELDQKEREIQSLKQQLDLTEQQGKK---ELEGTQQTLQTIKSELEMVQEDLS 1336
Cdd:TIGR02168 804 ALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESlaaEIEELEELIEELESELEALLNERA 883
|
...
gi 568935679 1337 ETQ 1339
Cdd:TIGR02168 884 SLE 886
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
629-1336 |
1.02e-23 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 109.39 E-value: 1.02e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 629 KEKERIAVQLQSIEADMLDQEAAFVQI-REAKTMVEED---LQRRLEEFEGEREQLQkvaDAAASLEQQLEQVKLTLFQR 704
Cdd:TIGR02169 251 EELEKLTEEISELEKRLEEIEQLLEELnKKIKDLGEEEqlrVKEKIGELEAEIASLE---RSIAEKERELEDAEERLAKL 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 705 DQQLAALQQEHldvikqlTSTQEALQAKGQSLDDLHTRYDELQARLEELQREADSREDAIHFLQNEKIVLEVALQSAKSD 784
Cdd:TIGR02169 328 EAEIDKLLAEI-------EELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKRE 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 785 KEELDRGARRLEEDTEETSGLLEQLRQDLAVKSNQVEHLQQETATLRKQMQKVKEQFVQQKVMVEAYRRDatskdqlINE 864
Cdd:TIGR02169 401 INELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQE-------LYD 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 865 LKATKKRLDSEMKELRQELIKLQGEKKTVE--VEHSR-----LQKDMSLVHQQMAELeghlqsvqkerdemeihlqsLKF 937
Cdd:TIGR02169 474 LKEEYDRVEKELSKLQRELAEAEAQARASEerVRGGRaveevLKASIQGVHGTVAQL--------------------GSV 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 938 DKEQMIAL-TEANETLKKQIEELQQEAKKAITEQKQ------------KMKRLGSDLSSAQKE--------MKTKHKAYE 996
Cdd:TIGR02169 534 GERYATAIeVAAGNRLNNVVVEDDAVAKEAIELLKRrkagratflplnKMRDERRDLSILSEDgvigfavdLVEFDPKYE 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 997 NAV-----------SILSRRLQEALASKEATDAELNQLRAQSTGGSSDPVLHEKI-RALEVELQNVGQSKILLEKELQEV 1064
Cdd:TIGR02169 614 PAFkyvfgdtlvveDIEAARRLMGKYRMVTLEGELFEKSGAMTGGSRAPRGGILFsRSEPAELQRLRERLEGLKRELSSL 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1065 ITMTSQELEESREKVLELEDELQESRGFRRKIKRLEESNKKLALELEHERGKLTGLGQSNAALREHNSILETALAKREAD 1144
Cdd:TIGR02169 694 QSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEED 773
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1145 LVQLNLQVQAVlqrkeeEDRQMKQLVQALQVSLEKEKMEVNSLKEQMAAarIEAGHNRRHFKAATLElsEVKKELQAKEH 1224
Cdd:TIGR02169 774 LHKLEEALNDL------EARLSHSRIPEIQAELSKLEEEVSRIEARLRE--IEQKLNRLTLEKEYLE--KEIQELQEQRI 843
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1225 LVQ----TLQAEVDELQIQDGKHSQEIAQFQTELAEARTQLQLLQKKLDEQMSQQPTGSQEMEDLKWELDQKEREIQSLK 1300
Cdd:TIGR02169 844 DLKeqikSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELK 923
|
730 740 750 760
....*....|....*....|....*....|....*....|....*
gi 568935679 1301 QQLDLTEQQGK---------KELEGTQQTLQTIKSELEMVQEDLS 1336
Cdd:TIGR02169 924 AKLEALEEELSeiedpkgedEEIPEEELSLEDVQAELQRVEEEIR 968
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
393-1106 |
6.22e-22 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 103.60 E-value: 6.22e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 393 ESSLAEPQDELLQILKDKRRLEGQVEALSLEASQALQEKAELQAQLAALSTRLQAQVEHSHSSQQKQDSLSSEVDTLKQS 472
Cdd:TIGR02168 266 EEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEK 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 473 CWDLERAMTDLQSMLEAKNASLASSNNDLQVAEEQYQRLMAKVEDMQRNILSKDNTVHDLRQQMTALQSQLQQVQLERTT 552
Cdd:TIGR02168 346 LEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEE 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 553 LTSKLQ-----ASQAEITSLQHARQWYQQQLTLAQEARVRLQGEMAHIQVGQMTQAGLLEHLKLENVSLshQLTETQHRS 627
Cdd:TIGR02168 426 LLKKLEeaelkELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL--ERLQENLEG 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 628 IKEKERIAVQLQSIEADMLDQEAAFVQIREA-KTMVEEDLQRRLEEFEGEREQLQKvaDAAASLEQQ---------LEQV 697
Cdd:TIGR02168 504 FSEGVKALLKNQSGLSGILGVLSELISVDEGyEAAIEAALGGRLQAVVVENLNAAK--KAIAFLKQNelgrvtflpLDSI 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 698 KLTLFQRDQQLAALQQE-HLDVIKQLTSTQEALQAKGQSLDDLHTRYDELQARLeELQREADSREDAIhfLQNEKIVLEV 776
Cdd:TIGR02168 582 KGTEIQGNDREILKNIEgFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNAL-ELAKKLRPGYRIV--TLDGDLVRPG 658
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 777 ALQSAKSDKEELDRGARR-----LEEDTEETSGLLEQLRQDLAVKSNQVEHLQQETATLRKQMQKVKEQFVQQKVMVEAY 851
Cdd:TIGR02168 659 GVITGGSAKTNSSILERRreieeLEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARL 738
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 852 RRDATSKDQLINELKATKKRLDSEMKELRQELIKLQGEKKTVEVEHSRLQKDMSLVHQQMAELEGHLQSVQKERDEMEIH 931
Cdd:TIGR02168 739 EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEE 818
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 932 LQSLKFDKEQmiaLTEANETLKKQIEELQQEAKKaITEQKQKMKRLGSDLSSAQKEMKTKHKAYENAVSILSRRLQEALA 1011
Cdd:TIGR02168 819 AANLRERLES---LERRIAATERRLEDLEEQIEE-LSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRS 894
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1012 SKEATDAELNQLRAQstggssdpvLHEKIRALEVELQNVGQSKILLEKELQEVITMTSQ-------ELEESREKVLELED 1084
Cdd:TIGR02168 895 ELEELSEELRELESK---------RSELRRELEELREKLAQLELRLEGLEVRIDNLQERlseeyslTLEEAEALENKIED 965
|
730 740
....*....|....*....|..
gi 568935679 1085 ELQESrgfRRKIKRLEESNKKL 1106
Cdd:TIGR02168 966 DEEEA---RRRLKRLENKIKEL 984
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
622-1275 |
7.56e-22 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 103.09 E-value: 7.56e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 622 ETQHRSIKEKERIAVQLQSI--EADMLDQEAAFVQIREAKTMVEEdLQRRLEEFEGEREQLQKvadAAASLEQQLEQVKL 699
Cdd:COG1196 199 ERQLEPLERQAEKAERYRELkeELKELEAELLLLKLRELEAELEE-LEAELEELEAELEELEA---ELAELEAELEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 700 TLFQRDQQLAALQQEHLDVIKQLTSTQEALQAKGQSLDDLHTRYDELQARLEELQREADSREDAIHFLQNEKIVLEVALQ 779
Cdd:COG1196 275 ELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 780 SAKSDKEELDRGARRLEEDTEETSGLLEQLRQDLAVKSNQVEHLQQETATLRKQMQkvkeqfvqqkvmveayrrdatSKD 859
Cdd:COG1196 355 EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEE---------------------ALL 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 860 QLINELKATKKRLDSEMKELRQELIKLQGEKKTVEVEHSRLQKDMSLVHQQMAELEGHLQSVQKERDEMEIHLQSLKfdk 939
Cdd:COG1196 414 ERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAA--- 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 940 eqmialteANETLKKQIEELQQEAKKAITEQKQKMKRLGSDLSSAQkEMKTKHKAYENAVSILSRRLQEALASKEATDAE 1019
Cdd:COG1196 491 --------ARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAV-LIGVEAAYEAALEAALAAALQNIVVEDDEVAAA 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1020 LNQLRAQSTGGSSDPVLHEKIRALEVELQNVGQSKILLEKELQEVitmtsqELEESREKVLELEDELQESRGFRRKIKRL 1099
Cdd:COG1196 562 AIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVAS------DLREADARYYVLGDTLLGRTLVAARLEAA 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1100 EESNKKLALELEHERGKLTGLGQSNAALREHNSILETALAKREADLVQLNLQVQAVLQRKEEEDRQMKQLVQALQVSLEK 1179
Cdd:COG1196 636 LRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEE 715
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1180 EKMEVNSLKEQMAAARIEAGHNRRHFKAATLELSEVKKELQAKEHLVQTLQAEVDELQ-------------IQDGKHSQE 1246
Cdd:COG1196 716 RLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEreiealgpvnllaIEEYEELEE 795
|
650 660 670
....*....|....*....|....*....|...
gi 568935679 1247 IAQF----QTELAEARTQLQLLQKKLDEQMSQQ 1275
Cdd:COG1196 796 RYDFlseqREDLEEARETLEEAIEEIDRETRER 828
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
662-1299 |
2.71e-21 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 101.17 E-value: 2.71e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 662 VEEDLQR---RLEEFEGEREQLQKVADAAasleQQLEQVKLTLFQRDQQLAALQQEHLDviKQLTSTQEALQAKGQSLDD 738
Cdd:COG1196 184 TEENLERledILGELERQLEPLERQAEKA----ERYRELKEELKELEAELLLLKLRELE--AELEELEAELEELEAELEE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 739 LHTRYDELQARLEELQREADSREDAIHFLQNEkivlevaLQSAKSDKEELDRGARRLEEDTEETSGLLEQLRQDLAVKSN 818
Cdd:COG1196 258 LEAELAELEAELEELRLELEELELELEEAQAE-------EYELLAELARLEQDIARLEERRRELEERLEELEEELAELEE 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 819 QVEHLQQETATLRKQMQKVKEQfvqqkvmveayrrdatskdqlINELKATKKRLDSEMKELRQELIKLQGEKKTVEVEHS 898
Cdd:COG1196 331 ELEELEEELEELEEELEEAEEE---------------------LEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 899 RLQKDMSLVHQQMAELEGHLQSVQKERDEMEIHLQSLKfdkEQMIALTEANETLKKQIEELQQEAKKAITEQKQkmkrlg 978
Cdd:COG1196 390 EALRAAAELAAQLEELEEAEEALLERLERLEEELEELE---EALAELEEEEEEEEEALEEAAEEEAELEEEEEA------ 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 979 sdLSSAQKEMKTKHKAYENAVSILSRRLQEAlASKEATDAELNQLRAQSTGGSSDPVLHEKIRALEVELQNVGQSKILLE 1058
Cdd:COG1196 461 --LLELLAELLEEAALLEAALAELLEELAEA-AARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYE 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1059 KELQEVITMTSQELEESREKVL-ELEDELQESRGFRRKIKRLEESNKKLALELEHERGKLTGLGQSNAALREHNSILETA 1137
Cdd:COG1196 538 AALEAALAAALQNIVVEDDEVAaAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYV 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1138 LAKREADLVQLNLQVQAVLQRKEEEDRQMKQLVQALQVSLEKEKMEVNSLKEQMAAARIEAGHNRRHFKAATLELSEVKK 1217
Cdd:COG1196 618 LGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEE 697
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1218 ELQAKEHLVQTLQAEVDELQIQDGKHSQEIAQFQTELAEARTQLQLLQKKLDEQMSQQPTGSQEMEDLKWELDQKEREIQ 1297
Cdd:COG1196 698 ALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIE 777
|
..
gi 568935679 1298 SL 1299
Cdd:COG1196 778 AL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
416-978 |
3.73e-19 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 94.23 E-value: 3.73e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 416 QVEALSLEASQALQEKAELQAQLAALSTRLQAQVEHSHSSQQKQDSLSSEVDTLKQSCWDLERAMTDLQSMLEAKNASLA 495
Cdd:COG1196 219 KEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELA 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 496 SSNNDLQVAEEQYQRLMAKVEDMQRNILSKDNTVHDLRQQMTALQSQLQQVQLERTTLTSKLQASQAEITSLQHARQWYQ 575
Cdd:COG1196 299 RLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 576 QQLTLAQEARVRLQGEMAHIQVGQMTQAGLLEHLKLENVSLSHQLTETQHRSIKEKERIAVQLQSIEADMLDQEAAFVQI 655
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 656 REAKTMVEEDLQRRLEEFEGEREQLQKVADAAASLEQQLEQVKLTLFQRDQQLAALQQE-------HLDVIKQLTSTQEA 728
Cdd:COG1196 459 EALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAglrglagAVAVLIGVEAAYEA 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 729 LQAKGQSLDDLHTRYDELQARLEELQREADSREDAIHFLQNEKIvLEVALQSAKSDKEELDRGARRLEEDTEETSGLLEQ 808
Cdd:COG1196 539 ALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKI-RARAALAAALARGAIGAAVDLVASDLREADARYYV 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 809 LRQDLAVKSNQVEHLQQETATLRKQMQKVKEQFVQQKVMVEAYRRDATSKDQLINELKATKKRLDSEMKELRQELIKLQG 888
Cdd:COG1196 618 LGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEE 697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 889 EKKTVEVEHSRLQKDMSLVHQQMAELEGHLQSVQKERDEMEIHLQSlkfDKEQMIALTEANETLKKQIEELQQEAKKAit 968
Cdd:COG1196 698 ALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLE---EEELLEEEALEELPEPPDLEELERELERL-- 772
|
570
....*....|
gi 568935679 969 eqKQKMKRLG 978
Cdd:COG1196 773 --EREIEALG 780
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
667-1356 |
3.97e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 94.35 E-value: 3.97e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 667 QRRLEEfegEREQLQKVADAAASLEQQLEQVKLTlfqrdqqlAALQQEHLDVIKQLTSTQEALQAKgqslddlhtRYDEL 746
Cdd:TIGR02168 178 ERKLER---TRENLDRLEDILNELERQLKSLERQ--------AEKAERYKELKAELRELELALLVL---------RLEEL 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 747 QARLEELQREADSREDAIHFLQNEKIVLEVALqsaksdkEELDRGARRLEEDTEETSGLLEQLRQDLAVKSNQVEHLQQE 826
Cdd:TIGR02168 238 REELEELQEELKEAEEELEELTAELQELEEKL-------EELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRER 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 827 TATLRKQMQKVKEQFVQQKVMVEAYRRDATSKDQLINELKATKKRLDSEMKELRQELIKLQGEKKTVEVEHSRLQKDMSL 906
Cdd:TIGR02168 311 LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQ 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 907 VHQQMAELEGHLQsvqkerdEMEIHLQSLkfdkeqmialteaNETLKKQIEELQQEAKKAITEQKQKMKRLGSDLSSAQK 986
Cdd:TIGR02168 391 LELQIASLNNEIE-------RLEARLERL-------------EDRRERLQQEIEELLKKLEEAELKELQAELEELEEELE 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 987 EMKTKHKAYENAVSILSRRLQEALASKEATDAELNQLRAqstggssdpvlheKIRALEVELQNV-----GQSKILLEKEL 1061
Cdd:TIGR02168 451 ELQEELERLEEALEELREELEEAEQALDAAERELAQLQA-------------RLDSLERLQENLegfseGVKALLKNQSG 517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1062 QEVITMTSQELEESREKV-LELEDELQESRGFRrKIKRLEESNKKLALELEHERGKLTGLGQSNAALREHNSILETALAK 1140
Cdd:TIGR02168 518 LSGILGVLSELISVDEGYeAAIEAALGGRLQAV-VVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKN 596
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1141 RE------ADLVQLNLQVQAVLQ----------RKEEEDRQMKQL-VQALQVSLEKEKM--------EVNSLKEQMAAAR 1195
Cdd:TIGR02168 597 IEgflgvaKDLVKFDPKLRKALSyllggvlvvdDLDNALELAKKLrPGYRIVTLDGDLVrpggvitgGSAKTNSSILERR 676
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1196 IEAGHNRRHFKAATLELSEVKKELQAKEHLVQTLQAEVDELQIQDGKHSQEIAQFQTELAEARTQLQLLQKKLDEQMSQQ 1275
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1276 PTGSQEMEDLKWELDQKEREIQSLKQQLDLTEQQgkkeLEGTQQTLQTIKSELEMVQEDLSETQKDKFMLQAKVSELKNN 1355
Cdd:TIGR02168 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQ----IEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERR 832
|
.
gi 568935679 1356 M 1356
Cdd:TIGR02168 833 I 833
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
391-1086 |
6.66e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 93.58 E-value: 6.66e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 391 SMESSLAEPQDELLQILKDKRRLEGQVEALSLEASQALQEKAELQAQLAALSTRLQAQVEHSHSSQQKQ-------DSLS 463
Cdd:TIGR02168 278 ELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLeelkeelESLE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 464 SEVDTLKQSCWDLERAMTDLQSMLEAKNASLASSNNDLQVAEEQYQRLMAKVEDMQRNILSKDNTVHDLRQ-----QMTA 538
Cdd:TIGR02168 358 AELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKkleeaELKE 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 539 LQSQLQQVQLERTTLTSKLQASQAEITSLQHARQWYQQQLTLAQEARVRLQGEMAHIQVGQMTQAGLLEHLKlENVSLSH 618
Cdd:TIGR02168 438 LQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVK-ALLKNQS 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 619 QLTETQHR-----SIKEKERIAVQ------LQSIEADmlDQEAAFVQI---------------------------REAKT 660
Cdd:TIGR02168 517 GLSGILGVlseliSVDEGYEAAIEaalggrLQAVVVE--NLNAAKKAIaflkqnelgrvtflpldsikgteiqgnDREIL 594
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 661 MVEEDLQRRLEEFEGEREQLQKVADA-------AASLEQQLEQVKLT------------------------------LFQ 703
Cdd:TIGR02168 595 KNIEGFLGVAKDLVKFDPKLRKALSYllggvlvVDDLDNALELAKKLrpgyrivtldgdlvrpggvitggsaktnssILE 674
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 704 RDQQLAALQQEHLDVIKQLTSTQEALQAKGQSLDDLHTRYDELQARLEELQREADSREDAIHFLQNEKIVLEVALQSAKS 783
Cdd:TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSK 754
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 784 DKEELDRGARRLEEDTEETSGLL-------EQLRQDLAVKSNQVEHLQQETATLRKQMQKVKEQFVQQKVMVEAYRRDAT 856
Cdd:TIGR02168 755 ELTELEAEIEELEERLEEAEEELaeaeaeiEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIA 834
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 857 SKDQLINELKATKKRLDSEMKELRQELIKLQGEKKTVEVEHSRLQKDMSLVHQQMAELEGHLQSVQKERDEMEIHLQSLk 936
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSEL- 913
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 937 fdKEQMIALTEANETLKKQIEELQQEakkaITEQKQKMKRLGSDLssaqkemktkhkayenavsilsrrLQEALASKEAT 1016
Cdd:TIGR02168 914 --RRELEELREKLAQLELRLEGLEVR----IDNLQERLSEEYSLT------------------------LEEAEALENKI 963
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568935679 1017 DAELNQLRaqstggssdpvlhEKIRALEVELQNVGQSKILLEKELQEV----ITMTSQ--ELEESREKVLELEDEL 1086
Cdd:TIGR02168 964 EDDEEEAR-------------RRLKRLENKIKELGPVNLAAIEEYEELkeryDFLTAQkeDLTEAKETLEEAIEEI 1026
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
618-1193 |
8.50e-19 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 93.08 E-value: 8.50e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 618 HQLTETQHRSIKEKERIAVQLQSIEADMLDQEAAFVQIREAKTMVEEDLQRRLEEFEGEREQLQKVADAAASLEQQLEQV 697
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 698 KLTLFQRDQQLAALQQEHLDVIKQLTSTQEALQAKGQSLDDLHTRYDELQARLEELQREADSREDAIHFLQNEKIVLEVA 777
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 778 LQSAKSDKEELDRGARRLEEDTEETSGLLEQLRQDLAVKSNQVEHLQQETATLRKQMQKVKEQFVQQKVMVEAYRRDATS 857
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAL 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 858 KDQLINELKATKKRLDSemKELRQELIKLQGEKKTVEVEHSRLQKDMSLVHQQMAELEGHLQSVQKErdemeihlqslkf 937
Cdd:COG1196 475 LEAALAELLEELAEAAA--RLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAA------------- 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 938 dkeqmiALTEANETLKKQIEELQQEAKKAITEQKQkmKRLGSDLSSAQKEMKTKHKAYENAVSILSRRLQEALASKEATD 1017
Cdd:COG1196 540 ------LEAALAAALQNIVVEDDEVAAAAIEYLKA--AKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREA 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1018 AELNQLRAQStggssdpvLHEKIRALEVELQNVGQSKILLEKELQEVITMTSQELEESREKVLELEDELQESRGfRRKIK 1097
Cdd:COG1196 612 DARYYVLGDT--------LLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEA-EAELE 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1098 RLEESNKKLALELEHERGKLTGLGQSNAALREHNSILETALAKREADLVQLNLQVQAVLQRKEEEDRQMKQLVQALQVSL 1177
Cdd:COG1196 683 ELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDL 762
|
570
....*....|....*.
gi 568935679 1178 EKEKMEVNSLKEQMAA 1193
Cdd:COG1196 763 EELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
641-965 |
1.20e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 86.26 E-value: 1.20e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 641 IEADMLDQEAAFVQIREAKTMVEEDLQRRLEEFEGEREQLQKVADAAASLEQQLEQVKLTLFQRDQQLAALQQEHLDVIK 720
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 721 QLTSTQEALQAKGQSLDDLHTRYDELQARLEELQREADSREDAIHFLQNEKIVLEVALQSAKSDKEELDRGARRLEEDTE 800
Cdd:TIGR02168 762 EIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE 841
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 801 ETSGLLEQLRQDLAVKSNQVEHLQQETATLRKQMQKVKEQFVQQKVMVEAYRRDATSKDQLINELKATKKRLDSEMKELR 880
Cdd:TIGR02168 842 DLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELR 921
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 881 QELIKLQGEKKTVEVEHSRLQKDMSLVHQQMAE-LEGHLQSVQKERDEMEIHLQSLK----------------------- 936
Cdd:TIGR02168 922 EKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEeAEALENKIEDDEEEARRRLKRLEnkikelgpvnlaaieeyeelker 1001
|
330 340 350
....*....|....*....|....*....|.
gi 568935679 937 --FDKEQMIALTEANETLKKQIEELQQEAKK 965
Cdd:TIGR02168 1002 ydFLTAQKEDLTEAKETLEEAIEEIDREARE 1032
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
830-1443 |
2.86e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 84.99 E-value: 2.86e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 830 LRKQMQKVKEQFVQ----QKVMVEAYRRDATSKDQLINELKATKKRLDSEMKELRQELIKLQGEKKTVEVEHSRLQKDMS 905
Cdd:COG1196 198 LERQLEPLERQAEKaeryRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 906 LVHQQMAELEGHLQSVQKERDEMEihlQSLKFDKEQMIALTEANETLKKQIEELQQEakkaITEQKQKMKRLGSDLSSAQ 985
Cdd:COG1196 278 ELELELEEAQAEEYELLAELARLE---QDIARLEERRRELEERLEELEEELAELEEE----LEELEEELEELEEELEEAE 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 986 KEMKTKHKAYENAVSILSRRLQEALASKEATDAELNQLRAQStggssdpvlhEKIRALEVELQNVGQSKILLEKELQEVI 1065
Cdd:COG1196 351 EELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL----------RAAAELAAQLEELEEAEEALLERLERLE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1066 TMTSQELEESREKVLELEDELQESRGFRRKIKRLEESNKKLALELEHERGKLTGLGQSNAALREHNSILETALAKREADL 1145
Cdd:COG1196 421 EELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1146 VQLNLQVQAVLQRKEEEDRQM------------KQLVQALQVSLEKEKMEVNSLKEQMAAARIEAGHNRRHFKAATLELS 1213
Cdd:COG1196 501 ADYEGFLEGVKAALLLAGLRGlagavavligveAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLD 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1214 EVKKELQAKEHLVQTLQAEVDELQIQDGKHSQEIAQFQTELAEARTQLQLLQKkldeqmsqqpTGSQEMEDLKWELDQKE 1293
Cdd:COG1196 581 KIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLE----------AALRRAVTLAGRLREVT 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1294 REIQSLKQQLDLTEQQGKKELEGTQQTLQTIKSELEMVQEDLSETQKDKFMLQAKVSELKNNMKTLLQQNQQLKLDLRRG 1373
Cdd:COG1196 651 LEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQL 730
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1374 AAKKKEPKGEsnssspatpikipdcpvpasLLEELLRPPPAVSKEPLKNLNncLQQLKQEMDSLQRQMEE 1443
Cdd:COG1196 731 EAEREELLEE--------------------LLEEEELLEEEALEELPEPPD--LEELERELERLEREIEA 778
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
400-966 |
1.40e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 82.68 E-value: 1.40e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 400 QDELLQILKDKRRLEGQVEALSLEASQALQEKAELQAQLAALSTRLQAQVEHSHSSQQKQDSLSSEVDTLKQSCWDLERA 479
Cdd:COG1196 287 QAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 480 MTDLQSMLEAKNASLASSNNDLQVAEEQYQRLMAKVEDMQRNILSKDNTVHDLRQQMTALQSQLQQVQLERTTLTSKLQA 559
Cdd:COG1196 367 LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 560 SQAEITSLQHARQwyQQQLTLAQEARVRLQGEMAHIQVGQMTQAGLLEHLKLENVSLSHQLTETQHRSIKEKERIAVQLQ 639
Cdd:COG1196 447 AAEEEAELEEEEE--ALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAG 524
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 640 SIEADMLDQEAAFVQIREAKTMVEEDLQRRLEEFEGEREQLQKVADAAASLEQQLEQVKLTLFQRDQQLAALQQEHLDVI 719
Cdd:COG1196 525 AVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLV 604
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 720 KQLtstqealqakgqsLDDLHTRYDELQARLEELQREADSREDAIHFLQNEKIVLEVALqsaksdkEELDRGARRLEEDT 799
Cdd:COG1196 605 ASD-------------LREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVT-------LEGEGGSAGGSLTG 664
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 800 EETSGLLEQLRQDLAVKSNQVEHLQQETATLRKQMQKVKEQFVQQKVMVEAYRRDATSKDQLINELKATKKRLDSEMKEL 879
Cdd:COG1196 665 GSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEE 744
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 880 RQELIKLQGEKKTVEVEHSRLQKDMSLVHQQMAELEG-------HLQSVQKERDEMeihlqslkfdKEQMIALTEANETL 952
Cdd:COG1196 745 EELLEEEALEELPEPPDLEELERELERLEREIEALGPvnllaieEYEELEERYDFL----------SEQREDLEEARETL 814
|
570
....*....|....
gi 568935679 953 KKQIEELQQEAKKA 966
Cdd:COG1196 815 EEAIEEIDRETRER 828
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
727-1358 |
2.62e-15 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 81.65 E-value: 2.62e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 727 EALQAKGQSLDDLHTRYDELQARLEELQReadSREDAIHF--LQNEKIVLEV-----ALQSAKSDKEELDRGARRLEEDT 799
Cdd:TIGR02169 177 EELEEVEENIERLDLIIDEKRQQLERLRR---EREKAERYqaLLKEKREYEGyellkEKEALERQKEAIERQLASLEEEL 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 800 EETSGLLEQLRQDLAVK-----------------------------SNQVEHLQQETATLRKQMQKVKEQFVQQKVMVEA 850
Cdd:TIGR02169 254 EKLTEEISELEKRLEEIeqlleelnkkikdlgeeeqlrvkekigelEAEIASLERSIAEKERELEDAEERLAKLEAEIDK 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 851 YRRDATSKDQLINELKATKKRLDSEMKELRQELIKLQGEKKTVEVEHSRLQKDMSLVHQQMAELEGHLQSVQKERDEMEI 930
Cdd:TIGR02169 334 LLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQE 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 931 HLQSLKFDKEQMIALTEANETLKKQIEELQQEAKKAITEQKQKMKRLGSDLSSAQKEM---KTKHKAYENAVSILSRRLQ 1007
Cdd:TIGR02169 414 ELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELydlKEEYDRVEKELSKLQRELA 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1008 EALASKEATDAELNQLRAQSTG-GSSDPVLHEKIRAL-EVELQNVGQSKILLEKELQEVITmtsqELEESREKVLELEDE 1085
Cdd:TIGR02169 494 EAEAQARASEERVRGGRAVEEVlKASIQGVHGTVAQLgSVGERYATAIEVAAGNRLNNVVV----EDDAVAKEAIELLKR 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1086 LQESRGFRRKIKRLEESNKKlaLELEHERGKL-----------------------TGLGQSNAALREHNSILEtaLAKRE 1142
Cdd:TIGR02169 570 RKAGRATFLPLNKMRDERRD--LSILSEDGVIgfavdlvefdpkyepafkyvfgdTLVVEDIEAARRLMGKYR--MVTLE 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1143 ADLVQLN-LQVQAVLQRKEEEDRQMKQLVQALQVSLEKEKM--EVNSLKEQMAAARIEAGHNRRHFKAATLELSEVKKEL 1219
Cdd:TIGR02169 646 GELFEKSgAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLkrELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEI 725
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1220 QAKEHLVQTLQAEVDELQIQDGKHSQEIAQFQTELAEARTQLQLLQKKL------------DEQMSQQPTGSQEMEDLKW 1287
Cdd:TIGR02169 726 EQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLhkleealndleaRLSHSRIPEIQAELSKLEE 805
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568935679 1288 ELDQKEREIQSLKQQL---DLTEQQGKKELEGTQQTLQTIKSELEMVQEDLSETQKDKFMLQAKVSELKNNMKT 1358
Cdd:TIGR02169 806 EVSRIEARLREIEQKLnrlTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRD 879
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
641-1353 |
4.63e-15 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 80.88 E-value: 4.63e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 641 IEADMLDQEAAFVQIREAKTMVEEDLQRrLEEFEGEREQLQKVADaaasLEQQLEQVKLTLFQRDQQLAALQQEHLDviK 720
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEKRQQ-LERLRREREKAERYQA----LLKEKREYEGYELLKEKEALERQKEAIE--R 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 721 QLTSTQEALQAKGQSLDDLHTRYDELQARLEELqreadsredaihflqNEKIvlevalqSAKSDKEeldrgARRLEEDTE 800
Cdd:TIGR02169 245 QLASLEEELEKLTEEISELEKRLEEIEQLLEEL---------------NKKI-------KDLGEEE-----QLRVKEKIG 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 801 ETSGLLEQLRQDLAVKSNQVEHLQQETATLRKQMQKVKEQFVQQKVMVEAYRRDatsKDQLINELKATKKRLDsemkELR 880
Cdd:TIGR02169 298 ELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKR---RDKLTEEYAELKEELE----DLR 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 881 QELIKLQGEKKTVEVEHSRLQKDMSLVHQQMAELeghlqsvQKERDEMEIHLQSLKFDKEQMIALTEANETLKKQIEELQ 960
Cdd:TIGR02169 371 AELEEVDKEFAETRDELKDYREKLEKLKREINEL-------KRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEK 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 961 QEAKKAITEQKQKMKRLGSDLSSAQKEM---KTKHKAYENAVSILSRRLQEALASKEATDAELNQLRAQSTG-GSSDPVL 1036
Cdd:TIGR02169 444 EDKALEIKKQEWKLEQLAADLSKYEQELydlKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVlKASIQGV 523
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1037 HEKIRAL-EVELQNVGQSKILLEKELQEVITmtsqELEESREKVLELedeLQESRGFRRKIKRLeesNKKLALELEHERG 1115
Cdd:TIGR02169 524 HGTVAQLgSVGERYATAIEVAAGNRLNNVVV----EDDAVAKEAIEL---LKRRKAGRATFLPL---NKMRDERRDLSIL 593
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1116 KLTGLGQSNAALREHNSILETALAKREADLVqlnlqvqaVLQRKEEEDRQMkqlVQALQVSLEKEKMEVNSLKEQMAAAR 1195
Cdd:TIGR02169 594 SEDGVIGFAVDLVEFDPKYEPAFKYVFGDTL--------VVEDIEAARRLM---GKYRMVTLEGELFEKSGAMTGGSRAP 662
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1196 IEAGHNRRHFKAATLELSEVKKELQAKEhlvQTLQAEVDELQiqdgkhsQEIAQFQTELAEARTQLQLLQKKLDEQMSQQ 1275
Cdd:TIGR02169 663 RGGILFSRSEPAELQRLRERLEGLKREL---SSLQSELRRIE-------NRLDELSQELSDASRKIGEIEKEIEQLEQEE 732
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568935679 1276 PTGSQEMEDLKWELDQKEREIQSLKQQLDLTEqqgkKELEGTQQTLQTIKSELEMVQEDLSETQKDKfmLQAKVSELK 1353
Cdd:TIGR02169 733 EKLKERLEELEEDLSSLEQEIENVKSELKELE----ARIEELEEDLHKLEEALNDLEARLSHSRIPE--IQAELSKLE 804
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
392-1088 |
5.08e-15 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 80.88 E-value: 5.08e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 392 MESSLAEPQDELLQILKDKRRLEGQVEALSLEASQALQEKAELQAQLAALSTRLQAQVEHSHSSQQKQDSLSSEVDTLKQ 471
Cdd:TIGR02169 320 AEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKR 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 472 SCWDLERAMTDLQSMLEAKNASLASSNNDLQVAEEQYQRLMAKVEDMQRNILSKDNTVHDLRQQMTALQSQLQQVQLERT 551
Cdd:TIGR02169 400 EINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYD 479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 552 TLTSKLQASQAEITSLQ-HARQWYQQQL-TLAQEARVRLQGEMAHIQVGQMTQAGLLEHLKLEnVSLSHQLTETqhrsIK 629
Cdd:TIGR02169 480 RVEKELSKLQRELAEAEaQARASEERVRgGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIE-VAAGNRLNNV----VV 554
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 630 EKERIAVQLQSIEADMLDQEAAFVQIREAKTMVEE----------DLQRRLEEFEGEREQLQKVADAAASLEQQLEQVKL 699
Cdd:TIGR02169 555 EDDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDlsilsedgviGFAVDLVEFDPKYEPAFKYVFGDTLVVEDIEAARR 634
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 700 TLFQrdQQLAALQQEHLDviKQLTSTQEALQAKGQSLD--DLHTRYDELQARLEELQREADSREDAIHFLQNEKIVLEVA 777
Cdd:TIGR02169 635 LMGK--YRMVTLEGELFE--KSGAMTGGSRAPRGGILFsrSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQE 710
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 778 LQSAKSDKEELDRGARRLEEDTEETSGLLEQLRQDLAVKSNQVEHLQQETATLRKQMQKVKEQFVQQKVMVEayrrdats 857
Cdd:TIGR02169 711 LSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALN-------- 782
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 858 kdqlinelkatkkrlDSEMKELRQELIKLQGEKKTVEVEHSRLQKDMSLVHQQMAELEGHLQSVQKERDEMEIHLQSLkf 937
Cdd:TIGR02169 783 ---------------DLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDL-- 845
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 938 dKEQMIALTEANETLKKQIEELQQEAKKAITEQKQKMKRLGsDLSSAQKEMKTKHKAYEN-------AVSILSRRLQEAL 1010
Cdd:TIGR02169 846 -KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLG-DLKKERDELEAQLRELERkieeleaQIEKKRKRLSELK 923
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1011 ASKEATDAELNQLRAQSTGGSSDP-------VLHEKIRALEVELQNVGQSKILLEKELQEVITmTSQELEESREKVLELE 1083
Cdd:TIGR02169 924 AKLEALEEELSEIEDPKGEDEEIPeeelsleDVQAELQRVEEEIRALEPVNMLAIQEYEEVLK-RLDELKEKRAKLEEER 1002
|
....*
gi 568935679 1084 DELQE 1088
Cdd:TIGR02169 1003 KAILE 1007
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
405-1236 |
5.98e-14 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 77.47 E-value: 5.98e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 405 QILKDKRRLEGQVEALSLEASQALQEKAELQAQLAALSTRLQAQVEHSHSSQQKQDSLSSEvdtLKQSCWDLERAMTDLQ 484
Cdd:pfam15921 86 QVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQ---LQNTVHELEAAKCLKE 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 485 SMLEAKNASLASSNNDLQVAEEQYQRLMAKVEDMQ----RNILSKDN--TVHdLRQQMTALQSQLQQVQLERTTLTSKLQ 558
Cdd:pfam15921 163 DMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEeasgKKIYEHDSmsTMH-FRSLGSAISKILRELDTEISYLKGRIF 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 559 ASQAEITSLQHARQWYQQQLTLAQEARVRLQGEMAHIQVGQMTQAGllEHLKLENVSLSHQLTETQHRSIKEKERIAVQL 638
Cdd:pfam15921 242 PVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKA--SSARSQANSIQSQLEIIQEQARNQNSMYMRQL 319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 639 QSIEADMLDQEAafvQIREAKTMVE---EDLQRRL----EEFEGEREQLQKVADAAASLEQQLEQVKLTLFQRDQQLAAL 711
Cdd:pfam15921 320 SDLESTVSQLRS---ELREAKRMYEdkiEELEKQLvlanSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLE 396
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 712 QQEHLDVIKQLTSTQEALQAKGQSLDDLHTRYDELQARLEELQREA----------------------------DSREDA 763
Cdd:pfam15921 397 KEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECqgqmerqmaaiqgkneslekvssltaqlESTKEM 476
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 764 IHFLQNEKIVLEVALQSAKSDKEELDRGARRLEEDTEETSGLLEQLRQDLAVKSNQVEHLQQETATLRK---QMQKVKEQ 840
Cdd:pfam15921 477 LRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNvqtECEALKLQ 556
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 841 FVQQKVMVEAYRRDATSKDQLINE-------LKATKKRLDSEMKELRQELIKLQGEKKTVEVEHSRLQKDMSLVHQQMAE 913
Cdd:pfam15921 557 MAEKDKVIEILRQQIENMTQLVGQhgrtagaMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVK 636
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 914 L----EGHLQSVQKERDEMEIHLQSLKFDKEQMIALTEANETLKKQIEELQQEAKKAITEQKQKMKRLGSDLSSAQKEMK 989
Cdd:pfam15921 637 LvnagSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLK 716
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 990 TKHKAYENAVSILSRRLQEALASKEATDAELNQLR----AQSTGGSSDPVLHEKIRALEVELQNVGQSKILLEKELQevi 1065
Cdd:pfam15921 717 SMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQfleeAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELE--- 793
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1066 TMTSQElEESREKVLELEDELQESR----GFRRKIKRLEESNKKLALELEHERGKLTGLG-QSNAALREHnsILETALAK 1140
Cdd:pfam15921 794 VLRSQE-RRLKEKVANMEVALDKASlqfaECQDIIQRQEQESVRLKLQHTLDVKELQGPGyTSNSSMKPR--LLQPASFT 870
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1141 READLVQLNLQVQAVLQR--------KEEEDRQMKQLVQALQVSLEKEKMEVNSLKEQMAAArIEAGHNRRHFKAATLEL 1212
Cdd:pfam15921 871 RTHSNVPSSQSTASFLSHhsrktnalKEDPTRDLKQLLQELRSVINEEPTVQLSKAEDKGRA-PSLGALDDRVRDCIIES 949
|
890 900
....*....|....*....|....
gi 568935679 1213 SEVKKELQAKEHLVQTLQAEVDEL 1236
Cdd:pfam15921 950 SLRSDICHSSSNSLQTEGSKSSET 973
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
498-1086 |
1.68e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 75.74 E-value: 1.68e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 498 NNDLQVAEEQYQRLMAKVEDMQRNILSKDNTVHDLRQQMTALQSQLQQVQLERTTLTSKLQASQAEITSLQHARQWYQQQ 577
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEER 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 578 LTLAQEARVRLQGEMAHIQVGQMTQAGLLEHLKLENVSLSHQLTETQHRSIKEKERIAVQLQSIEA---DMLDQEAAFVQ 654
Cdd:COG1196 318 LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEElaeELLEALRAAAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 655 IREAKTMVEEDLQRRLEEFEGEREQLQKVADAAASLEQQLEQVKLTLFQRDQQLAALQQEHLDVIKQLTSTQEALQAKGQ 734
Cdd:COG1196 398 LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEA 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 735 SLDDLHTRYDELQARLEELQREADSREDAIHFLQNEKIVLEVALQSAKSDKEELDRGARRLEEDTEETSGLLEQLRQDLA 814
Cdd:COG1196 478 ALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDE 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 815 VKSNQVEHLqqetatlrKQMQKVKEQFVQQKVMVEAYRRDATSKDQLINELKATKKRLDSEMKELRQELIKlqgekktVE 894
Cdd:COG1196 558 VAAAAIEYL--------KAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGD-------TL 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 895 VEHSRLQKDMSLVHQQMAELEGHLQSVQKERDEMEIHLQSLKFDKEQMIALTEANETLKKQIEELQQEAKKAITEQKQKM 974
Cdd:COG1196 623 LGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAE 702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 975 KRLGSDLSSAQKEMKTKHKAYENAVSILSRRLQEALASKEATDAELNQLRAQSTGGSSDP-VLHEKIRALEVELQNVGQS 1053
Cdd:COG1196 703 EEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLeELERELERLEREIEALGPV 782
|
570 580 590
....*....|....*....|....*....|....*....
gi 568935679 1054 KILLEKELQEVIT----MTSQ--ELEESREKVLELEDEL 1086
Cdd:COG1196 783 NLLAIEEYEELEErydfLSEQreDLEEARETLEEAIEEI 821
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
832-1355 |
3.78e-13 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 74.72 E-value: 3.78e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 832 KQMQKVKEQFVQQKVMVEAYRRDATSKDQLINELKATKKRLDSEMKELRQELIKLQGEKKTVEVEHSRLQKdmslVHQQM 911
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE----LKEEI 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 912 AELEGHLQSVQKERDEMEIHLQSLKFDKEQMIALTEANETLKKQIEELQQEAKKAIT---------EQKQKMKRLGSDLS 982
Cdd:PRK03918 241 EELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKlsefyeeylDELREIEKRLSRLE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 983 SAQKEMKTKHKAYENavsiLSRRLQEALASKEATDAELNQLRaqstggsSDPVLHEKIRALEVELQNVgqSKILLEKELQ 1062
Cdd:PRK03918 321 EEINGIEERIKELEE----KEERLEELKKKLKELEKRLEELE-------ERHELYEEAKAKKEELERL--KKRLTGLTPE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1063 EVItmtsQELEESREKVLELEDELQESRGFRRKIKRLEESNKKLALELEHERGKLTGLGqsnAALREHNSilETALAKRE 1142
Cdd:PRK03918 388 KLE----KELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCG---RELTEEHR--KELLEEYT 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1143 ADLVQLNLQVQAVLQRKEEEDRQMKQLVQALqvSLEKEKMEVNSLKEQMAAARIE-AGHNRRHFKAATLELSEVKKELQA 1221
Cdd:PRK03918 459 AELKRIEKELKEIEEKERKLRKELRELEKVL--KKESELIKLKELAEQLKELEEKlKKYNLEELEKKAEEYEKLKEKLIK 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1222 KEHLVQTLQAEVDELQiqdgkhsqeiaqfqtelaEARTQLQLLQKKLDEQMSQQPTGSQEMEDLKWE-LDQKEREIQSLK 1300
Cdd:PRK03918 537 LKGEIKSLKKELEKLE------------------ELKKKLAELEKKLDELEEELAELLKELEELGFEsVEELEERLKELE 598
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 568935679 1301 QQLD--LTEQQGKKELEGTQQTLQTIKSELEMVQEDLSETQKDKFMLQAKVSELKNN 1355
Cdd:PRK03918 599 PFYNeyLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKK 655
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
706-1353 |
4.36e-13 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 74.70 E-value: 4.36e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 706 QQLAALQQEHLDVIKQLTSTQEALQAKGQSLDDLHTRYDELQARLEELQREADSredaIHFLQNEKIVLEVALQSAKSDK 785
Cdd:TIGR00606 210 KYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSK----IMKLDNEIKALKSRKKQMEKDN 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 786 EELDRGARRLEEDTEETSGLLEQLRQ--------DLAVKSNQVEHLQQETATLRKQMQKVKEQFVQQKVMVEAYRRDATS 857
Cdd:TIGR00606 286 SELELKMEKVFQGTDEQLNDLYHNHQrtvrekerELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRA 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 858 KDQLINELKatkkrLDSEMKELRQELIKLQGEKKTVEVEHSRLQKDMSLVHQQMAELEGHLQSVQKERDEMEIHLQSLKF 937
Cdd:TIGR00606 366 RDSLIQSLA-----TRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGR 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 938 DKE-QMIALTEANETLKKQIEELQQ--EAKKAITEQKQKMKRLGSDLSSAQKEMKTKHKAYEnaVSILSRRLQEALASKE 1014
Cdd:TIGR00606 441 TIElKKEILEKKQEELKFVIKELQQleGSSDRILELDQELRKAERELSKAEKNSLTETLKKE--VKSLQNEKADLDRKLR 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1015 ATDAELNQL-RAQSTGGSSDPVLHEKIRALEVELQNVGQSKILL---------EKELQEVITMTSQELEESREKVLELED 1084
Cdd:TIGR00606 519 KLDQEMEQLnHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELtsllgyfpnKKQLEDWLHSKSKEINQTRDRLAKLNK 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1085 ELQESRGFRRKIKRLEESNKKLALELEHERGKLTGLGQSNAALREHNSILETALAKREADLVQLNLQVQAVLQRKEEEDR 1164
Cdd:TIGR00606 599 ELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQS 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1165 QMKQLVQALQVslEKEKMEVNS-LKEQMAAARIEAGHNRRHFKAATLELSEVKKELQAKEHLVQTLQAEVDELQIQDGKH 1243
Cdd:TIGR00606 679 CCPVCQRVFQT--EAELQEFISdLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKV 756
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1244 SQEIAQFQTELAEARTQLQLLQKKLDEQMSQQpTGSQEMEDLKWELDQKEREIQSLKQQL-----DLTEQQGKKELEGTQ 1318
Cdd:TIGR00606 757 NRDIQRLKNDIEEQETLLGTIMPEEESAKVCL-TDVTIMERFQMELKDVERKIAQQAAKLqgsdlDRTVQQVNQEKQEKQ 835
|
650 660 670
....*....|....*....|....*....|....*
gi 568935679 1319 QTLQTIKSELEMVQEDLSETQKDKFMLQAKVSELK 1353
Cdd:TIGR00606 836 HELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELK 870
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
716-1357 |
4.88e-13 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 74.33 E-value: 4.88e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 716 LDVIKQLTSTQEALQAKGQSLDDLHTRYDELQARLEELQREADSREDAIHFLQNEKIVLEVALQSAKSDKEELDRGARRL 795
Cdd:PRK03918 168 GEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKEL 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 796 EEDTEETSGLLEQLRQdlavKSNQVEHLQQETATLRKQMQKVKEqfvqQKVMVEAYRRDATSKDQL---INELKATKKRL 872
Cdd:PRK03918 248 ESLEGSKRKLEEKIRE----LEERIEELKKEIEELEEKVKELKE----LKEKAEEYIKLSEFYEEYldeLREIEKRLSRL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 873 DSEMKELRQELIKLQGEKKTVEvehsRLQKDMSLVHQQMAELEGHLQSVQKERDEMEiHLQSLKFDKeqmialteANETL 952
Cdd:PRK03918 320 EEEINGIEERIKELEEKEERLE----ELKKKLKELEKRLEELEERHELYEEAKAKKE-ELERLKKRL--------TGLTP 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 953 KKQIEELqQEAKKAITEQKQKMKRLGSDLSSAQKEMKTKHKAYEnavsilsrRLQEA-----LASKEATDAELNQLRAQS 1027
Cdd:PRK03918 387 EKLEKEL-EELEKAKEEIEEEISKITARIGELKKEIKELKKAIE--------ELKKAkgkcpVCGRELTEEHRKELLEEY 457
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1028 TggssdpvlhEKIRALEVELQNVGQSKILLEKELQEVitmtsqeleesrEKVLELEDELQESRGFRRKIKRLEESNKKLA 1107
Cdd:PRK03918 458 T---------AELKRIEKELKEIEEKERKLRKELREL------------EKVLKKESELIKLKELAEQLKELEEKLKKYN 516
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1108 LE-LEHERGKLTGLGQSNAALREHNSILETALAKREAdlvqLNLQVQAVLQRKEEEDRQMKQLVQALQVSLEKEKMEVNS 1186
Cdd:PRK03918 517 LEeLEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEE----LKKKLAELEKKLDELEEELAELLKELEELGFESVEELEE 592
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1187 -LKEqmaaarIEAGHNRrhfkaaTLELSEVKKELQAKEHLVQTLQAEVDELqiqdgkhSQEIAQFQTELAEARTQLQLLQ 1265
Cdd:PRK03918 593 rLKE------LEPFYNE------YLELKDAEKELEREEKELKKLEEELDKA-------FEELAETEKRLEELRKELEELE 653
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1266 KKLDEQMSQQPtgSQEMEDLKWELDQKEREIQSLKQQLDLTEQQGKKeLEGTQQTLQTIKSELEMVQEDLSETQKdkfmL 1345
Cdd:PRK03918 654 KKYSEEEYEEL--REEYLELSRELAGLRAELEELEKRREEIKKTLEK-LKEELEEREKAKKELEKLEKALERVEE----L 726
|
650
....*....|..
gi 568935679 1346 QAKVSELKNNMK 1357
Cdd:PRK03918 727 REKVKKYKALLK 738
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
645-1213 |
6.30e-13 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 73.80 E-value: 6.30e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 645 MLDQEAAFVQIREAKTMVEE--DLQRRLEEFEGEREQLQKVADAAASLEQQLEQV--------KLTLFQRDQQLAALQQE 714
Cdd:COG4913 217 MLEEPDTFEAADALVEHFDDleRAHEALEDAREQIELLEPIRELAERYAAARERLaeleylraALRLWFAQRRLELLEAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 715 hldvikqLTSTQEALQAKGQSLDDLHTRYDELQARLEELQREADSRE-DAIHFLQNEKIVLEVALQSAKSDKEELDRGAR 793
Cdd:COG4913 297 -------LEELRAELARLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEERERRRARLEALLA 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 794 RLEEDTEETsglleqlRQDLAVKSNQVEHLQQETATLRKQMQkvkEQFVQQKVMVEAYRRDATSKDQLINELKATKKRLD 873
Cdd:COG4913 370 ALGLPLPAS-------AEEFAALRAEAAALLEALEEELEALE---EALAEAEAALRDLRRELRELEAEIASLERRKSNIP 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 874 SEMKELRQ-----------------ELIKLQGEKKT----VE-----------VEHSRLQKDMSLVHQQmaELEGHLQ-- 919
Cdd:COG4913 440 ARLLALRDalaealgldeaelpfvgELIEVRPEEERwrgaIErvlggfaltllVPPEHYAAALRWVNRL--HLRGRLVye 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 920 ---SVQKERDEMEIHLQSL--KFDkeqmIALTEANETLKKQI------------EELQQEaKKAITE-----------QK 971
Cdd:COG4913 518 rvrTGLPDPERPRLDPDSLagKLD----FKPHPFRAWLEAELgrrfdyvcvdspEELRRH-PRAITRagqvkgngtrhEK 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 972 QKMKRLGSDL---SSAQKemktKHKAYENAVSILSRRLQEALASKEATDAELNQLRAQSTggssdpvLHEKIRALEVELQ 1048
Cdd:COG4913 593 DDRRRIRSRYvlgFDNRA----KLAALEAELAELEEELAEAEERLEALEAELDALQERRE-------ALQRLAEYSWDEI 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1049 NVGQSKILLEkELQEVItmtsQELEESREKVLELEDELQESRgfrrkiKRLEESNKKLAlELEHERGKL-TGLGQSNAAL 1127
Cdd:COG4913 662 DVASAEREIA-ELEAEL----ERLDASSDDLAALEEQLEELE------AELEELEEELD-ELKGEIGRLeKELEQAEEEL 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1128 REHNSILETALAKREadlVQLNLQVQAVLQRkEEEDRQMKQLVQALQVSLEKEKMEVNSLKEQMAAARIEAghnRRHFKA 1207
Cdd:COG4913 730 DELQDRLEAAEDLAR---LELRALLEERFAA-ALGDAVERELRENLEERIDALRARLNRAEEELERAMRAF---NREWPA 802
|
....*.
gi 568935679 1208 ATLELS 1213
Cdd:COG4913 803 ETADLD 808
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
392-1379 |
9.74e-13 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 73.29 E-value: 9.74e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 392 MESSLAEPQDELLQILKDKRRLEGQVEALSLE------ASQALQ-EKAELQAQLAALSTRLQAQVEHSHSSQQKQDSLSS 464
Cdd:pfam01576 80 LESRLEEEEERSQQLQNEKKKMQQHIQDLEEQldeeeaARQKLQlEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEE 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 465 EVDTLKQSCWDLERAMTDLQSMLEAKNASLASSNNDLQVAEEQYQRLMAKVEDMQRNILSKDNTVHDLRQQMTALQSQLQ 544
Cdd:pfam01576 160 RISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLA 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 545 QVQLERTTLTSKLQASQAEITSLQHARQWYQQQLTLAQEarvrlqgemahiqvgqmtqagllehlKLENVSLSHQLTETQ 624
Cdd:pfam01576 240 KKEEELQAALARLEEETAQKNNALKKIRELEAQISELQE--------------------------DLESERAARNKAEKQ 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 625 HRSIKEK-ERIAVQLQsieaDMLDQEAAFVQIREAKTMVEEDLQRRLEE----FEGEREQL-QKVADAAASLEQQLEQVK 698
Cdd:pfam01576 294 RRDLGEElEALKTELE----DTLDTTAAQQELRSKREQEVTELKKALEEetrsHEAQLQEMrQKHTQALEELTEQLEQAK 369
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 699 LTLFQRDQQLAALQQEHLDVIKQLTSTQEALQAKGQSLDDLHTRYDELQARLEELQREADSREDAIHFLQNEKIVLEVAL 778
Cdd:pfam01576 370 RNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLL 449
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 779 QSAKSDKEELDRGARRLEEDTEETSGLL-EQLRQDLAVkSNQVEHLQQETATLRKQMQKvkeqfvqqkvMVEAYRRDATS 857
Cdd:pfam01576 450 NEAEGKNIKLSKDVSSLESQLQDTQELLqEETRQKLNL-STRLRQLEDERNSLQEQLEE----------EEEAKRNVERQ 518
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 858 KDQLINELKATKKRLDSEMKELRQeliklqgekktVEVEHSRLQKDMSLVHQQMAELEGHLQSVQKERDEMEIHLQSLKF 937
Cdd:pfam01576 519 LSTLQAQLSDMKKKLEEDAGTLEA-----------LEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLV 587
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 938 DKEQmialteaNETLKKQIEELQQEAKKAITEQKQKMKRLGSDLSSAQKEMKTKhkayENAVSILSRRLQEALASKEATD 1017
Cdd:pfam01576 588 DLDH-------QRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREK----ETRALSLARALEEALEAKEELE 656
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1018 AELNQLRA--------QSTGGSSDPVLHEKIRALEVELQNVGQSKILLEKELQEV------ITMTSQELEESREKVLELE 1083
Cdd:pfam01576 657 RTNKQLRAemedlvssKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQATedaklrLEVNMQALKAQFERDLQAR 736
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1084 DELQESrgfrrKIKRLEESNKKLALELEHErgkltglgqsnaalREHNSILETALAKREADLVQLNLQVQAVLQRKEEED 1163
Cdd:pfam01576 737 DEQGEE-----KRRQLVKQVRELEAELEDE--------------RKQRAQAVAAKKKLELDLKELEAQIDAANKGREEAV 797
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1164 RQMKQLvQALQVSLEKEKMEVNSLKEQMAAARIEaghNRRHFKAATLELSEVKKELQAKEHLVQTLQAEVDELQIQDGKH 1243
Cdd:pfam01576 798 KQLKKL-QAQMKDLQRELEEARASRDEILAQSKE---SEKKLKNLEAELLQLQEDLAASERARRQAQQERDELADEIASG 873
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1244 SQEIAQFQTELAEARTQLQLLQKKLDEQMSQqptgsqeMEDLKWELDQKEREIQSLKQQLDlTEQQGKKELEGTQQTLQT 1323
Cdd:pfam01576 874 ASGKSALQDEKRRLEARIAQLEEELEEEQSN-------TELLNDRLRKSTLQVEQLTTELA-AERSTSQKSESARQQLER 945
|
970 980 990 1000 1010 1020
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568935679 1324 IKSELEMVQEDLSETQKDKF-----MLQAKVSELKNNMKTLLQQNQQLKLDLRRGAAKKKE 1379
Cdd:pfam01576 946 QNKELKAKLQEMEGTVKSKFkssiaALEAKIAQLEEQLEQESRERQAANKLVRRTEKKLKE 1006
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
741-1354 |
1.25e-12 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 72.75 E-value: 1.25e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 741 TRYDELQARLEELQREADSREDAIHFLQNEKIVLEVALQSAKSDKEELDRGARRLEEDTEETSGLLEQLRQDLA------ 814
Cdd:TIGR04523 33 TEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSkinsei 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 815 -VKSNQVEHLQQETATLRKQMQKVKEQfvQQKVMVEAYRRDATSKDqlinelkatkkrLDSEMKELRQELIKLQGEKKTV 893
Cdd:TIGR04523 113 kNDKEQKNKLEVELNKLEKQKKENKKN--IDKFLTEIKKKEKELEK------------LNNKYNDLKKQKEELENELNLL 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 894 EVEHSRLQKDMSLVHQQMAELEgHLQSVQKERDEMEIHLQSlkfdkeQMIALTEANETLKKQIEELQQE---AKKAITEQ 970
Cdd:TIGR04523 179 EKEKLNIQKNIDKIKNKLLKLE-LLLSNLKKKIQKNKSLES------QISELKKQNNQLKDNIEKKQQEineKTTEISNT 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 971 KQKMKRLGSDLSSAQKEMKTKHKAYENAVSILSRrLQEALASKEATDAELNQLRAQSTggssDPVLHEKIRALEVELQNV 1050
Cdd:TIGR04523 252 QTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKE-LEKQLNQLKSEISDLNNQKEQDW----NKELKSELKNQEKKLEEI 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1051 gQSKILLEK----ELQEVITMTSQELEESREKVLELEDELQESRGFRRKIKRLEESNKklalelehergkltglgQSNAA 1126
Cdd:TIGR04523 327 -QNQISQNNkiisQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYK-----------------QEIKN 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1127 LREHNSILETALAKREadlvQLNLQVQAVLQRKEEEDRQMKQLVQALQVSLEKEKMEVNSLKEQMAAarieaghnrrhFK 1206
Cdd:TIGR04523 389 LESQINDLESKIQNQE----KLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSV-----------KE 453
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1207 AATLELSEVKKELQAKehlVQTLQAEVDELQIQDGKHSQEIAQFQTELAEARTQLQLLQKKLDEQMSQQPTGSQEMEDLK 1286
Cdd:TIGR04523 454 LIIKNLDNTRESLETQ---LKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLE 530
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568935679 1287 WELDQKEREIQSLKQQL-----DLTEQQGKKELEGTQQTLQTIKSELEMVQEDLSETQKDKFMLQAKVSELKN 1354
Cdd:TIGR04523 531 SEKKEKESKISDLEDELnkddfELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIK 603
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
734-1325 |
1.39e-12 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 72.84 E-value: 1.39e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 734 QSLDDLHTRYDELQARLEEL----QREADSREDAIHFLQNEKIVLEvalqSAKSDKEELdrgarrleedTEETSGLLEQL 809
Cdd:pfam15921 110 QSVIDLQTKLQEMQMERDAMadirRRESQSQEDLRNQLQNTVHELE----AAKCLKEDM----------LEDSNTQIEQL 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 810 RQDLAVKsnqvEHLQQETATLRKQMQKV--KEQFVQQKVMVEAYRRDATSKDQLINELkatkkrlDSEMKELRQELIKLQ 887
Cdd:pfam15921 176 RKMMLSH----EGVLQEIRSILVDFEEAsgKKIYEHDSMSTMHFRSLGSAISKILREL-------DTEISYLKGRIFPVE 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 888 GEKKTVEVEHsrlQKDMSLVHQQmaelegHLQSVQKERDEMEIHLQSLKfdKEQMIALTEANeTLKKQIEELQQEAKKAI 967
Cdd:pfam15921 245 DQLEALKSES---QNKIELLLQQ------HQDRIEQLISEHEVEITGLT--EKASSARSQAN-SIQSQLEIIQEQARNQN 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 968 TEQKQKMKRLGSDLSSAQKEMKTKHKAYENAVSILSRRLqeALASKEATDAELNQLR-AQSTGGSSDPV------LHEKI 1040
Cdd:pfam15921 313 SMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQL--VLANSELTEARTERDQfSQESGNLDDQLqklladLHKRE 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1041 RALEVELQnvgQSKILLEKELQEVIT------------MTSQELE-------------------------ESREKVLELE 1083
Cdd:pfam15921 391 KELSLEKE---QNKRLWDRDTGNSITidhlrrelddrnMEVQRLEallkamksecqgqmerqmaaiqgknESLEKVSSLT 467
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1084 DELQESRGFRRKIKRlEESNKKLALElEHERGkltgLGQSNAALREHNSILETALAKREADLVQLNLQVQAVLQRKEEED 1163
Cdd:pfam15921 468 AQLESTKEMLRKVVE-ELTAKKMTLE-SSERT----VSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGD 541
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1164 --RQMKQLVQALQVSLEKEKMEVNSLKEQM--------------AAARIEAGHNRRHFKAATLELSEVKKELQAKEHLVQ 1227
Cdd:pfam15921 542 hlRNVQTECEALKLQMAEKDKVIEILRQQIenmtqlvgqhgrtaGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIR 621
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1228 TLQAEVDELQIQDGKHSQEIAQFQTELAEARTQLQLLQKKLDEQMSQQPTGSQEMEDLKWELDQKEREIQSLKQQLDLTE 1307
Cdd:pfam15921 622 ELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQL 701
|
650
....*....|....*...
gi 568935679 1308 QQGKKELEGTQQTLQTIK 1325
Cdd:pfam15921 702 KSAQSELEQTRNTLKSME 719
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
619-1304 |
2.40e-12 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 71.92 E-value: 2.40e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 619 QLTETQHRSIKEKERIAVQLQSIEADMLDQEAAFVQIREAKTMveEDLQRRLEEFEGEREQLQKVA------DAAASLEQ 692
Cdd:TIGR00618 230 HLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEEL--RAQEAVLEETQERINRARKAAplaahiKAVTQIEQ 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 693 QLEQVKLTLFQRDQQLAALQQEHLDVIKQLTSTQEALQAKGQSL--DDLHTRYDELQARLEELQREADSREDAIHFLQNE 770
Cdd:TIGR00618 308 QAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHsqEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQ 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 771 KIVLEVALQSAKSDKEELDRGARRLEEDTEETSglleQLRQDLAVKSNQVEHLQQETATLRKQMQKVKEQFVQQKVMVEA 850
Cdd:TIGR00618 388 KTTLTQKLQSLCKELDILQREQATIDTRTSAFR----DLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQE 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 851 YRRDATSKDQLINELKATKKRLDSEMKELRQELIKLQGEKKTVEVEHSRLQKDMslvhQQMAELEGHLQSVQKERDEMEI 930
Cdd:TIGR00618 464 SAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPAR----QDIDNPGPLTRRMQRGEQTYAQ 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 931 HLQSLKFDKEQMIALTEANETLKKQIEELQQEAKKAiteqKQKMKRLGSDLssaqkemktkhkayENAVSILSRRLQEAL 1010
Cdd:TIGR00618 540 LETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSIL----TQCDNRSKEDI--------------PNLQNITVRLQDLTE 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1011 ASKEATDAELNQLRAQSTGGSSDPVLHEKIraleVELQNVGQSKILLEKEL-QEVITMTSQELEESREKVLELEDELQES 1089
Cdd:TIGR00618 602 KLSEAEDMLACEQHALLRKLQPEQDLQDVR----LHLQQCSQELALKLTALhALQLTLTQERVREHALSIRVLPKELLAS 677
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1090 RgfRRKIKRLEESNKKLAL---ELEHERGKLTGLGQSNAALREHNSILETALAKREADLVQLNLQVQAVLQRKEEE-DRQ 1165
Cdd:TIGR00618 678 R--QLALQKMQSEKEQLTYwkeMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQaRTV 755
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1166 MKQLVQALQVSLEKEKMEVNSLKEQMAAARiEAGHNRRHFKAATLELSEVKKELQakehlvQTLQAEVDELQIQDGKHSQ 1245
Cdd:TIGR00618 756 LKARTEAHFNNNEEVTAALQTGAELSHLAA-EIQFFNRLREEDTHLLKTLEAEIG------QEIPSDEDILNLQCETLVQ 828
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*....
gi 568935679 1246 EIAQFQTELAEARTQLQLLQKKLdeqmsqqptgsQEMEDLKWELDQKEREIQSLKQQLD 1304
Cdd:TIGR00618 829 EEEQFLSRLEEKSATLGEITHQL-----------LKYEECSKQLAQLTQEQAKIIQLSD 876
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
663-1315 |
5.64e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 70.86 E-value: 5.64e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 663 EEDLQRRLEEFEGEREQLQKVADAAASLEQQLEQVKLTLfqrdqqlaalqQEHLDVIKQLTSTQEALQAKGQSLDDLHTR 742
Cdd:PRK03918 164 YKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKEL-----------EEVLREINEISSELPELREELEKLEKEVKE 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 743 YDELQARLEELQREADSREDAIHFLQNEKIVLEVALQSAKSDKEELDRGARRLEE--DTEETSGLLEQLRQDLAVKSNQV 820
Cdd:PRK03918 233 LEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKElkEKAEEYIKLSEFYEEYLDELREI 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 821 EhlqQETATLRKQMQKVKEQFvqqkvmveayrRDATSKDQLINELKATKKRLDSEMKELRQELIKLQgEKKTVEVEHSRL 900
Cdd:PRK03918 313 E---KRLSRLEEEINGIEERI-----------KELEEKEERLEELKKKLKELEKRLEELEERHELYE-EAKAKKEELERL 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 901 QKDMSlvHQQMAELEGHLQSVQKERDEMEIHLQSLKFDKEQMiaLTEANEtLKKQIEELQQEAKKA------ITEQKQK- 973
Cdd:PRK03918 378 KKRLT--GLTPEKLEKELEELEKAKEEIEEEISKITARIGEL--KKEIKE-LKKAIEELKKAKGKCpvcgreLTEEHRKe 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 974 -MKRLGSDLSSAQKEMKTkhkaYENAVSILSRRLQEaLASKEATDAELNQLRAqstggssdpvLHEKIRALEVELQNVGQ 1052
Cdd:PRK03918 453 lLEEYTAELKRIEKELKE----IEEKERKLRKELRE-LEKVLKKESELIKLKE----------LAEQLKELEEKLKKYNL 517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1053 SKilLEKElqevitmtSQELEESREKVLELEDELqesRGFRRKIKRLEESNKKLAlELEHERGKLtglgqsnaalREHNS 1132
Cdd:PRK03918 518 EE--LEKK--------AEEYEKLKEKLIKLKGEI---KSLKKELEKLEELKKKLA-ELEKKLDEL----------EEELA 573
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1133 ILETALAKREADLVQlnlQVQAVLQRKEEEDRQMKQLVQALQvSLEKEKMEVNSLKEQMAAARIEAGHNRRHFKAATLEL 1212
Cdd:PRK03918 574 ELLKELEELGFESVE---ELEERLKELEPFYNEYLELKDAEK-ELEREEKELKKLEEELDKAFEELAETEKRLEELRKEL 649
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1213 SEVKKELQAKEHlvQTLQAEVDELqiqdgkhSQEIAQFQTELAEARTQLQLLQK---KLDEQMSQQPTGSQEMEDLKWEL 1289
Cdd:PRK03918 650 EELEKKYSEEEY--EELREEYLEL-------SRELAGLRAELEELEKRREEIKKtleKLKEELEEREKAKKELEKLEKAL 720
|
650 660
....*....|....*....|....*.
gi 568935679 1290 DQKEREIQSLKQQLDLTEQQGKKELE 1315
Cdd:PRK03918 721 ERVEELREKVKKYKALLKERALSKVG 746
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
738-1353 |
6.02e-12 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 70.64 E-value: 6.02e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 738 DLHTRYDELQARLEELQREADSREDAIHFLQNekivLEVALQSAKSdkeeldRGARRLEEDTEETSGLLEQLRQDLAVKS 817
Cdd:pfam12128 231 QAIAGIMKIRPEFTKLQQEFNTLESAELRLSH----LHFGYKSDET------LIASRQEERQETSAELNQLLRTLDDQWK 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 818 NQVEHLQQETATLRKQMQKVKEQF--------VQQKVMVEAYRRDATSKDQLINELKATKKRL--------DSEMKELRQ 881
Cdd:pfam12128 301 EKRDELNGELSAADAAVAKDRSELealedqhgAFLDADIETAAADQEQLPSWQSELENLEERLkaltgkhqDVTAKYNRR 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 882 ELIKLQGEKKTVEVEHSRLQKDMSLVHQQMAELEGHLQSVQKE-RDEMEIHLQSLKFDKEQMI-ALTEAN---------E 950
Cdd:pfam12128 381 RSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESElREQLEAGKLEFNEEEYRLKsRLGELKlrlnqatatP 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 951 TLKKQIEELQQEAKKAITEQKQKMKRLgSDLSSAQKEMKTKHKAYENAVSILSRRLQE--------------------AL 1010
Cdd:pfam12128 461 ELLLQLENFDERIERAREEQEAANAEV-ERLQSELRQARKRRDQASEALRQASRRLEErqsaldelelqlfpqagtllHF 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1011 ASKEATDAELNQLRAQSTG----GSSDPVLHEKIRALEVELQNVG--------QSKILLEKELQEVITMTSQELEESREK 1078
Cdd:pfam12128 540 LRKEAPDWEQSIGKVISPEllhrTDLDPEVWDGSVGGELNLYGVKldlkridvPEWAASEEELRERLDKAEEALQSAREK 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1079 VLELEDELQESRGFRRKIKRlEESNKKLALELEHER-GKLTGLGQS-----NAALREHNSILETALAKREADLVQLNLQV 1152
Cdd:pfam12128 620 QAAAEEQLVQANGELEKASR-EETFARTALKNARLDlRRLFDEKQSekdkkNKALAERKDSANERLNSLEAQLKQLDKKH 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1153 QAVLQRKEEEDRQMK-QLVQALQVSLEKEKMEVNSLKEQMAAARIEAghnRRHFKAATlelSEVKKELQAKehlvqtlqa 1231
Cdd:pfam12128 699 QAWLEEQKEQKREARtEKQAYWQVVEGALDAQLALLKAAIAARRSGA---KAELKALE---TWYKRDLASL--------- 763
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1232 EVDElqIQDGKHSQEIAQFQTELAEARtqlQLLQKKLDEQMSQQPTGSQEMEDLKWELDQKEREIQSLKQQLDLTEQQGK 1311
Cdd:pfam12128 764 GVDP--DVIAKLKREIRTLERKIERIA---VRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQQQLARLIADTK 838
|
650 660 670 680
....*....|....*....|....*....|....*....|..
gi 568935679 1312 KELegtqQTLQTIKSELEMVQEDLSETQKDKFMLQAKVSELK 1353
Cdd:pfam12128 839 LRR----AKLEMERKASEKQQVRLSENLRGLRCEMSKLATLK 876
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
665-1193 |
8.19e-12 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 70.07 E-value: 8.19e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 665 DLQRRLEEFEGEREQLQKVADAAASLEQQLEqvkltlfQRDQQLAALQQEhldvIKQLTSTQEALQAKGQSLDDlhtRYD 744
Cdd:PRK02224 217 ELDEEIERYEEQREQARETRDEADEVLEEHE-------ERREELETLEAE----IEDLRETIAETEREREELAE---EVR 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 745 ELQARLEELQREadsredaihflqNEKIVLEVALQSAKSDKEELDRGArrLEEDTEETSGLLEQLRQDLAVKSNQVEHLQ 824
Cdd:PRK02224 283 DLRERLEELEEE------------RDDLLAEAGLDDADAEAVEARREE--LEDRDEELRDRLEECRVAAQAHNEEAESLR 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 825 QETATLRKQMQKVKEQFVQQKVMVEAYRRDATSKDQLINElkatkkrLDSEMKELRQELIKLQGEKKTVEVEHSRLQKDM 904
Cdd:PRK02224 349 EDADDLEERAEELREEAAELESELEEAREAVEDRREEIEE-------LEEEIEELRERFGDAPVDLGNAEDFLEELREER 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 905 SLVHQQMAELEGHLQSVQKERDEMEIHL---------QSLKfDKEQMIALTEANEtlkkQIEELQQEAKKAITEQKQKMK 975
Cdd:PRK02224 422 DELREREAELEATLRTARERVEEAEALLeagkcpecgQPVE-GSPHVETIEEDRE----RVEELEAELEDLEEEVEEVEE 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 976 RL--GSDLSSAQKEMKTKhkayENAVSILSRRLQEALASKEATDAELNQLRAQSTGGSSDPVLHEKiRALEVELQNvgqs 1053
Cdd:PRK02224 497 RLerAEDLVEAEDRIERL----EERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKRE-AAAEAEEEA---- 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1054 killEKELQEVITMTS--QELEESREKVLELEDELQESRGFRRKIKRLEESNKKLALELEHERGKLTGLGQSNAALRE-- 1129
Cdd:PRK02224 568 ----EEAREEVAELNSklAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAef 643
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568935679 1130 HNSILETALAKREaDLVQLNLQVQAVLQRKEEEDRQMKQLVQALQVSLEkekmEVNSLKEQMAA 1193
Cdd:PRK02224 644 DEARIEEAREDKE-RAEEYLEQVEEKLDELREERDDLQAEIGAVENELE----ELEELRERREA 702
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
664-1352 |
9.82e-12 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 69.66 E-value: 9.82e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 664 EDLQRRLEEFEGEREQLQKVADAAASLEQQLEQVKltlfqrdqqlaalqqehldviKQLTSTQEALQAKGQSLDDLHTRY 743
Cdd:TIGR04523 103 SDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENK---------------------KNIDKFLTEIKKKEKELEKLNNKY 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 744 DELQARLEELQREADSREDAIHFLQNE--KIVLEV-ALQSAKSDKEELDRGARRLEEDTEEtsglLEQLRQDLavkSNQV 820
Cdd:TIGR04523 162 NDLKKQKEELENELNLLEKEKLNIQKNidKIKNKLlKLELLLSNLKKKIQKNKSLESQISE----LKKQNNQL---KDNI 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 821 EHLQQETATLRKQMQKVKEQFVQQKVMVEAYRRDATSKDQLINELKATKKRLDSEMKELRQELIKLQGEKKtvEVEHSRL 900
Cdd:TIGR04523 235 EKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKE--QDWNKEL 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 901 QKDMSLVHQQMAELEGHLQSVQKERDEMEIHLQSLKFDKEQmiaLTEANETLKKQIEELQQEAKKAITEQKQKMKRLgSD 980
Cdd:TIGR04523 313 KSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTN---SESENSEKQRELEEKQNEIEKLKKENQSYKQEI-KN 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 981 LSSAQKEMKTKHKAYENAVSILSRRLQEALASKEATDAELNQLRAQSTGGSSD-PVLHEKIRALEVELQNVGQSKILLEK 1059
Cdd:TIGR04523 389 LESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEiKDLTNQDSVKELIIKNLDNTRESLET 468
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1060 ELQEVITMTSQELEESREKVLELEDELQESRGFRRKIKRLEESNKKLAlelehergkltglgQSNAALREHNSILETALA 1139
Cdd:TIGR04523 469 QLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLT--------------KKISSLKEKIEKLESEKK 534
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1140 KREADLVQLNLQVQAVLQRKEEEdrQMKQLVQALQVSLEKEKMEVNSLKEQMAAARIEAghnrrhfKAATLELSEVKKEL 1219
Cdd:TIGR04523 535 EKESKISDLEDELNKDDFELKKE--NLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELI-------DQKEKEKKDLIKEI 605
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1220 QAKEHLVQTLQAEVDELQIQDGKHSQEIAQFQTELAEARTQLQLLQKKLDEQMSQQPTGSQEMEDLKWELDQKEREIQSL 1299
Cdd:TIGR04523 606 EEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDW 685
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|...
gi 568935679 1300 KQQLDLTEQQGKKELEGTQQtLQTIKSELEMVQEDLSETQKDKFMLQAKVSEL 1352
Cdd:TIGR04523 686 LKELSLHYKKYITRMIRIKD-LPKLEEKYKEIEKELKKLDEFSKELENIIKNF 737
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
684-896 |
1.49e-11 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 67.87 E-value: 1.49e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 684 ADAAASLEQQLEQVKLTLFQRDQQLAALQQEHLDVIKQLTSTQEALQAKGQSLDDLHTRYDELQARLEELQREADSREDA 763
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 764 IHFLQNEKIVLEVALQS-----------AKSDKEELDRGARRLEEDTEETSGLLEQLRQDLAvksnQVEHLQQETATLRK 832
Cdd:COG4942 99 LEAQKEELAELLRALYRlgrqpplalllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLA----ELAALRAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568935679 833 QMQKVKEQFVQQKvmvEAYRRDATSKDQLINELKATKKRLDSEMKELRQELIKLQGEKKTVEVE 896
Cdd:COG4942 175 ELEALLAELEEER---AALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
626-1189 |
2.39e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 68.55 E-value: 2.39e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 626 RSIKEKERIAVQLQSIEADMLDQEAAFVQI-REAKTM--VEEDLQRRLEEFEGEREQLQKVADAAASLEQQLEQVKltlf 702
Cdd:PRK03918 176 RRIERLEKFIKRTENIEELIKEKEKELEEVlREINEIssELPELREELEKLEKEVKELEELKEEIEELEKELESLE---- 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 703 QRDQQLAALQQEHLDVIKQLTSTQEALQAKGQSLDDLH---TRYDELQARLEELQREADSREDAIHFLQNEKIVLEVALQ 779
Cdd:PRK03918 252 GSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKekaEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 780 SAKSDKEELdrgarrleedtEETSGLLEQLRQDLAVKSNQVEhLQQETATLRKQMQKVKEQFVQQKV-----MVEAYRRD 854
Cdd:PRK03918 332 ELEEKEERL-----------EELKKKLKELEKRLEELEERHE-LYEEAKAKKEELERLKKRLTGLTPeklekELEELEKA 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 855 ATSKDQLINELKATKKRLDSEMKELRQELIKLQGEKKTVEV------EHSRLQ------KDMSLVHQQMAELEGHLQSVQ 922
Cdd:PRK03918 400 KEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVcgreltEEHRKElleeytAELKRIEKELKEIEEKERKLR 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 923 KERDEMEIHLQSL-KFDKEQMIA--LTEANETLKK-QIEELQQEAKKAiTEQKQKMKRLGSDLSSAQKEMKtKHKAYENA 998
Cdd:PRK03918 480 KELRELEKVLKKEsELIKLKELAeqLKELEEKLKKyNLEELEKKAEEY-EKLKEKLIKLKGEIKSLKKELE-KLEELKKK 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 999 VSILSRRLQEalaskeatdaelnqlraqstggssdpvLHEKIRALEVELQNVGQSKIlleKELQEVItmtsQELEESREK 1078
Cdd:PRK03918 558 LAELEKKLDE---------------------------LEEELAELLKELEELGFESV---EELEERL----KELEPFYNE 603
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1079 VLELEDELQEsrgfrrkIKRLEESNKKLALELEHERGKLTGLGQSNAALREHNSILETALAKRE-ADLVQLNLQVQAVLQ 1157
Cdd:PRK03918 604 YLELKDAEKE-------LEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEyEELREEYLELSRELA 676
|
570 580 590
....*....|....*....|....*....|..
gi 568935679 1158 RKEEEDRQMKQLVQALQVSLEKEKMEVNSLKE 1189
Cdd:PRK03918 677 GLRAELEELEKRREEIKKTLEKLKEELEEREK 708
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
668-1356 |
2.58e-11 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 68.66 E-value: 2.58e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 668 RRLEEFEGEREQLQKVADAAASLEQQLEQVKLTLFQRDQQLAALQqEHLDVIKQLTSTQEALQAKgqslddLHTRYDELQ 747
Cdd:pfam01576 2 RQEEEMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQ-EQLQAETELCAEAEEMRAR------LAARKQELE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 748 ARLEELQREADSREDAIHFLQNEKIVLEVALQSAKSDKEELDRGARRLEEDTEETSGLLEQLRQDLAVKSNQVEHLQQET 827
Cdd:pfam01576 75 EILHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKER 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 828 ATLRKQMQKVKEQFVQQKVMVEAYRRDATSKDQLINELkatKKRLDSEMKeLRQELIKLqgeKKTVEVEHSRLQKDMSLV 907
Cdd:pfam01576 155 KLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDL---EERLKKEEK-GRQELEKA---KRKLEGESTDLQEQIAEL 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 908 HQQMAELEGHLqsvQKERDEMEIHLQSLKFDKEQMIALTEANETLKKQIEELQQ--EAKKAITEQKQKMKR-LGSDL--- 981
Cdd:pfam01576 228 QAQIAELRAQL---AKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEdlESERAARNKAEKQRRdLGEELeal 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 982 ----------SSAQKEMKTKHkayENAVSILSRRLQEALASKEATDAELNQLRAQSTggssdPVLHEKIRALEVELQNVG 1051
Cdd:pfam01576 305 kteledtldtTAAQQELRSKR---EQEVTELKKALEEETRSHEAQLQEMRQKHTQAL-----EELTEQLEQAKRNKANLE 376
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1052 QSKILLEKE---LQEVITMTSQELEESREKVLELEDELQESRG----FRRKIKRLEESNKKLALELEHERGKLtglgqsn 1124
Cdd:pfam01576 377 KAKQALESEnaeLQAELRTLQQAKQDSEHKRKKLEGQLQELQArlseSERQRAELAEKLSKLQSELESVSSLL------- 449
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1125 aalrehnSILETALAKREADLVQLNLQVQAVLQRKEEEDRQMKQLVQALQvSLEKEKmevNSLKEQMAAARIEAGHNRRH 1204
Cdd:pfam01576 450 -------NEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLR-QLEDER---NSLQEQLEEEEEAKRNVERQ 518
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1205 FKAATLELSEVKKELQAKEHLVQTLQ---------------------AEVDELQIQDGKHSQEIAQFQTELAEAR---TQ 1260
Cdd:pfam01576 519 LSTLQAQLSDMKKKLEEDAGTLEALEegkkrlqrelealtqqleekaAAYDKLEKTKNRLQQELDDLLVDLDHQRqlvSN 598
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1261 LQLLQKKLDEQMSQQPTGS----QEMEDLKWELDQKEREIQSLKQQLDlTEQQGKKELEGTQQTLQTIKSELEMVQEDLS 1336
Cdd:pfam01576 599 LEKKQKKFDQMLAEEKAISaryaEERDRAEAEAREKETRALSLARALE-EALEAKEELERTNKQLRAEMEDLVSSKDDVG 677
|
730 740
....*....|....*....|....
gi 568935679 1337 ----ETQKDKFMLQAKVSELKNNM 1356
Cdd:pfam01576 678 knvhELERSKRALEQQVEEMKTQL 701
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
873-1358 |
2.92e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 68.12 E-value: 2.92e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 873 DSEMKELRQELIKLQGEKKTVEVEHSRLQKDM--------------SLVHQQMAELEGHLQSVQKERDEMEIHL----QS 934
Cdd:TIGR04523 32 DTEEKQLEKKLKTIKNELKNKEKELKNLDKNLnkdeekinnsnnkiKILEQQIKDLNDKLKKNKDKINKLNSDLskinSE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 935 LKFDKEQMIALTEANETLKKQIEELQQEAKKAITEQKQKMKRLgSDLSSAQKEMKTKHKAYENAVSILSRRLQEAlasKE 1014
Cdd:TIGR04523 112 IKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKEL-EKLNNKYNDLKKQKEELENELNLLEKEKLNI---QK 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1015 ATDAELNQLRAQSTGGSSDPVLHEKIRALEVELQNVGQSKILLEK---ELQEVITMTSQELEESREKVLELEDELQE-SR 1090
Cdd:TIGR04523 188 NIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDnieKKQQEINEKTTEISNTQTQLNQLKDEQNKiKK 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1091 GFRRKIKRLEESNKKLalelehergkltglgqsnaalrehnSILETALAKREADLVQLNLQVQAVLQR--KEEEDRQMKQ 1168
Cdd:TIGR04523 268 QLSEKQKELEQNNKKI-------------------------KELEKQLNQLKSEISDLNNQKEQDWNKelKSELKNQEKK 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1169 LVQaLQVSLEKEKMEVNSLKEQMAAARIEAGHnrrhfkaATLELSEVKKELQAKEHLVQTLQAEVDELQIQDGKHSQEIA 1248
Cdd:TIGR04523 323 LEE-IQNQISQNNKIISQLNEQISQLKKELTN-------SESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQIN 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1249 QFQTELAEARTQLQLLQKKLDEQMSQQPTGSQEMEDLKWELDQKEREIQSLKQQ----------LDLTEQQGKKELEGTQ 1318
Cdd:TIGR04523 395 DLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQdsvkeliiknLDNTRESLETQLKVLS 474
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 568935679 1319 QTLQTIKSELEMVQEDLSETQKDKFMLQAKVSELKNNMKT 1358
Cdd:TIGR04523 475 RSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKD 514
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
729-1301 |
7.12e-11 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 67.23 E-value: 7.12e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 729 LQAKGQSLDDLHTRYDELQARLEELQREADSREDAIHFLQNEKIVLEVALQSAKSDKEELDRGARRLEEDTEETSGLLEQ 808
Cdd:PRK01156 178 LRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 809 LRQDLAVKSNQVEHLQQETATLRKQMQKVKEQFVQQKVMVEAY---RRDATSKDQLINELKATKKRLDSEMKELrqelik 885
Cdd:PRK01156 258 IKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYfkyKNDIENKKQILSNIDAEINKYHAIIKKL------ 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 886 lqgekktvevehSRLQKDmslvHQQMAELeghlqsvQKERDEMEIHLQSLKFDKEQMIALTEANETLKKQIEELQQEAKK 965
Cdd:PRK01156 332 ------------SVLQKD----YNDYIKK-------KSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIER 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 966 AITEQKQKMKRLGSD---LSSAQKEMKTKHKAYENAVSILSRRLQEALASKEATDAELNQLRAQS----------TGGSS 1032
Cdd:PRK01156 389 MSAFISEILKIQEIDpdaIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSvcpvcgttlgEEKSN 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1033 DPVLH---------EKIRALEVELQNVGQSKILLEKELQEVITMTSQELEESREKVLELEDELQEsrgFRRKIKRLEESN 1103
Cdd:PRK01156 469 HIINHynekksrleEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLED---IKIKINELKDKH 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1104 KKlalelehergkltglgqSNAALREHNSI-LETALAKRE----ADLVQLNLQVQAVLQRKEEEDRQMKQLVQALQvSLE 1178
Cdd:PRK01156 546 DK-----------------YEEIKNRYKSLkLEDLDSKRTswlnALAVISLIDIETNRSRSNEIKKQLNDLESRLQ-EIE 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1179 KEKMEVNSLKEQMAAARIEAGHNRRHFKAATLELSEVKKELQAKEHLVQTLQAEVDELQIQDGKHSQEIAQFQTELAEAR 1258
Cdd:PRK01156 608 IGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSR 687
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 568935679 1259 TQLQLLQKKLDEQMSQQPTGSQEMEDLKWELDQKEREIQSLKQ 1301
Cdd:PRK01156 688 KALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKK 730
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
671-1321 |
8.01e-11 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 66.92 E-value: 8.01e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 671 EEFEGEREQLQKvadAAASLEQQLEQVKLTLFQRDQQLAALQQEHLDVIKQLTSTQEALQAKGQSL---DDLHTRYDELQ 747
Cdd:TIGR00618 190 KSLHGKAELLTL---RSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQeeqLKKQQLLKQLR 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 748 ARLEELQREADSREDAIHFLQNEKIVLEVALQSAKSdkEELDRGARRLEEDTEETSGLLEQL---RQDLAVKSNQVEHLQ 824
Cdd:TIGR00618 267 ARIEELRAQEAVLEETQERINRARKAAPLAAHIKAV--TQIEQQAQRIHTELQSKMRSRAKLlmkRAAHVKQQSSIEEQR 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 825 QETATLRKQMQKVKEQFVQQKVMVEAYRRdATSKDQLINELKATKKRLDSEMKELRQELIKLQGEKKTVEVEHSRlqkdM 904
Cdd:TIGR00618 345 RLLQTLHSQEIHIRDAHEVATSIREISCQ-QHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSA----F 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 905 SLVHQQMAELEGHLQSVQKERDEMEIHLQ-SLKFDKEQMIALTEANETLKKQIEELQQeaKKAITEQKQKMKRLgsdlss 983
Cdd:TIGR00618 420 RDLQGQLAHAKKQQELQQRYAELCAAAITcTAQCEKLEKIHLQESAQSLKEREQQLQT--KEQIHLQETRKKAV------ 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 984 aqkEMKTKHKAYENAVSILSRRLQEALASKEATDAELNQLRAQStGGSSDPVLHEKIRALEVELQNVGQSKILLEKELQE 1063
Cdd:TIGR00618 492 ---VLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQR-GEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQE 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1064 VITMTSQELEESREKVLELEDELQESRGFRRKIKRLEESNKKLALELEHERGKLTgLGQSNAALREHNSILETALAKREA 1143
Cdd:TIGR00618 568 IQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQ-PEQDLQDVRLHLQQCSQELALKLT 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1144 DLVQLNLQVqaVLQRKEEEDRQMKQLVQALQVSLEKEKMEVNSLKEQMAAARIEAGHNRRHFKAATLELSEVKKELQAKE 1223
Cdd:TIGR00618 647 ALHALQLTL--TQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIE 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1224 HLVQTLQAEvdeLQIQDGKHSQEIAQFQTELAEARTQLQLLQKKLDEQMSQQPTGSQEMEDLKWELDQKEREIQSLKQQL 1303
Cdd:TIGR00618 725 NASSSLGSD---LAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLL 801
|
650
....*....|....*...
gi 568935679 1304 DLTEQQGKKELEGTQQTL 1321
Cdd:TIGR00618 802 KTLEAEIGQEIPSDEDIL 819
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
736-1383 |
9.41e-11 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 66.92 E-value: 9.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 736 LDDLHTRYDELQARLEELQREADSREDAIHFLQNEKIVLEVALQSAKSDKEELDRGARRLEEDTEETSGLLEQLRQDLAv 815
Cdd:pfam02463 158 IEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNE- 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 816 ksNQVEHLQQETATLRKQMQKVKEQFVQQKVMVEAYRRDATSKDQLINELKATKKRLDSEMKELRQELIKLQGEKKTVEV 895
Cdd:pfam02463 237 --ERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEE 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 896 EHSRLQKdmslvhqQMAELEGHLQSVQKERDEMEihlQSLKFDKEQMIALTEANETLKKQIEELQQEAKKAITEQKQKMK 975
Cdd:pfam02463 315 KLKESEK-------EKKKAEKELKKEKEEIEELE---KELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESE 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 976 RLGSDLSSAQKEMKTKHKAYENAVSILSRRLQEALASKEATDAELNQLRAQSTGGSSDpVLHEKIRALEVELQNVGQSKI 1055
Cdd:pfam02463 385 RLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELK-QGKLTEEKEELEKQELKLLKD 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1056 LLEKELQEVITMTSQELEESREKVLELEDELQESRGFRRKIKRlEESNKKLALELEHERGKLTGLGQSNAALREhnsILE 1135
Cdd:pfam02463 464 ELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKAR-SGLKVLLALIKDGVGGRIISAHGRLGDLGV---AVE 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1136 TALAKRE-ADLVQLNLQVQAVLQRKEEEDRQMKQLVQALQVSLEKEKMEVN---SLKEQMAAARIEAGHNRRHFKAATLE 1211
Cdd:pfam02463 540 NYKVAIStAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPlksIAVLEIDPILNLAQLDKATLEADEDD 619
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1212 LSEVKKELQAKEHLVQTLQaEVDELQIQDGKHSQEIAQFQTELAEARTQLQLLQKKLDEQMSQQPTGSQEMEDLKW---- 1287
Cdd:pfam02463 620 KRAKVVEGILKDTELTKLK-ESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEIlrrq 698
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1288 ------ELDQKEREIQSLKQQLDLTEQQGKKELEGTQQTLQTIKSELEMVQEDLSETQKDKFMLQAKVSELKNNMKTLLQ 1361
Cdd:pfam02463 699 leikkkEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAE 778
|
650 660
....*....|....*....|..
gi 568935679 1362 QNQQLKLDLRRGAAKKKEPKGE 1383
Cdd:pfam02463 779 EREKTEKLKVEEEKEEKLKAQE 800
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
671-1174 |
1.50e-10 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 66.00 E-value: 1.50e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 671 EEFEGEREQLQKVADAAASLEQQLEQVKLTLFQRDQQLAALQ-------------QEHLDVIKqltstqEALQAKGQSLD 737
Cdd:pfam10174 268 EDREEEIKQMEVYKSHSKFMKNKIDQLKQELSKKESELLALQtkletltnqnsdcKQHIEVLK------ESLTAKEQRAA 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 738 DLHTRYDELQARLEELQREADSREDAIHFLQNEKIVLEVALQSAKSDKEELDRGARRLEEDTEEtsgLLEQLR---QDLA 814
Cdd:pfam10174 342 ILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIEN---LQEQLRdkdKQLA 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 815 VKSNQVEHLQQETATLRKQMQKVKEQFVQQKVMVEAYRRDATSKDQLINELKATKKRldsEMKELRQELIKLQGEKKTVE 894
Cdd:pfam10174 419 GLKERVKSLQTDSSNTDTALTTLEEALSEKERIIERLKEQREREDRERLEELESLKK---ENKDLKEKVSALQPELTEKE 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 895 VEHSRLQKDMSLVHQQMAELEGHLQS----VQKERDEMEIHLQSLKfdKEQMIALTE-ANETLKKQIEELQQEAKKAITE 969
Cdd:pfam10174 496 SSLIDLKEHASSLASSGLKKDSKLKSleiaVEQKKEECSKLENQLK--KAHNAEEAVrTNPEINDRIRLLEQEVARYKEE 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 970 QKQ---KMKRLGSDLSSAQKEMKTKHKAYENAVSILSRRLQEalASKEATDAELNQLRAQSTGGSsdpVLHEKIRALEVE 1046
Cdd:pfam10174 574 SGKaqaEVERLLGILREVENEKNDKDKKIAELESLTLRQMKE--QNKKVANIKHGQQEMKKKGAQ---LLEEARRREDNL 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1047 LQNVGQSKIlleKELQEVITMTSQELEESREKVLELEDELQESRGFRRKIKrlEESNKKLALELEHERGKLTglgqsnAA 1126
Cdd:pfam10174 649 ADNSQQLQL---EELMGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLR--AERRKQLEEILEMKQEALL------AA 717
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 568935679 1127 LREHNS---ILETALAKREADlvqlnlqVQAVLQRKEEEDRQMKQLVQALQ 1174
Cdd:pfam10174 718 ISEKDAniaLLELSSSKKKKT-------QEEVMALKREKDRLVHQLKQQTQ 761
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
506-1291 |
1.62e-10 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 66.15 E-value: 1.62e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 506 EQYQRLMAKVEDMQRNILSKDNTVHDLRQQMTALQSQLQQVQLERTTLTSKLQASQAEITSLQHARQWYQQQLTLAQEAR 585
Cdd:TIGR00618 176 DQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQ 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 586 VRLQGEMAHIQVGQMTQAGLLEHLklenvslshqltetqhrsikEKERIAVQLQSIEADMLDQEAAFVQIREAKTMVEED 665
Cdd:TIGR00618 256 LKKQQLLKQLRARIEELRAQEAVL--------------------EETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTE 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 666 LQRRLEEFEGEREQLQKVADAAASLEQQleqvkltlfqrDQQLAALQQEHldvikqltstqealqakgqsldDLHTRYDE 745
Cdd:TIGR00618 316 LQSKMRSRAKLLMKRAAHVKQQSSIEEQ-----------RRLLQTLHSQE----------------------IHIRDAHE 362
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 746 LQARLEELQREADSREDAIHFLQNEKIVLEVALQSAKSDKEELDRGARRLEEDTEETSglleQLRQDLAVKSNQVEHLQQ 825
Cdd:TIGR00618 363 VATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFR----DLQGQLAHAKKQQELQQR 438
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 826 ETATLRKQMQKVKEQFVQQKVMVEAYRRDATSKDQLINELKATKKRLDSEMKELRQELIKLQGEKKTVEVEHSRLQKDMs 905
Cdd:TIGR00618 439 YAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPAR- 517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 906 lvhQQMAELEGHLQSVQKERDEMEIHLQSLKFDKEQMIALTEANETLKKQIEELQQEAKKAiteqKQKMKRLGSDLssaq 985
Cdd:TIGR00618 518 ---QDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSIL----TQCDNRSKEDI---- 586
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 986 kemktkhkayENAVSILSRRLQEALASKEATDAELNQLRAQSTGGSSDPVLHEKIraleVELQNVGQSKILLEKEL-QEV 1064
Cdd:TIGR00618 587 ----------PNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVR----LHLQQCSQELALKLTALhALQ 652
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1065 ITMTSQELEESREKVLELEDELQESRgfRRKIKRLEESNKKLAL---ELEHERGKLTGLGQSNAALREHNSILETALAKR 1141
Cdd:TIGR00618 653 LTLTQERVREHALSIRVLPKELLASR--QLALQKMQSEKEQLTYwkeMLAQCQTLLRELETHIEEYDREFNEIENASSSL 730
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1142 EADLVQLNLQVQAVLQRKEEE-DRQMKQLVQALQVSLEKEKMEVNSLKEQMAAARiEAGHNRRHFKAATLELSEVKKELQ 1220
Cdd:TIGR00618 731 GSDLAAREDALNQSLKELMHQaRTVLKARTEAHFNNNEEVTAALQTGAELSHLAA-EIQFFNRLREEDTHLLKTLEAEIG 809
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568935679 1221 akehlvQTLQAEVDELQIQDGKHSQEIAQFQTELAEART---QLQLLQKKLDEQMSQQPTGSQEMEDLKWELDQ 1291
Cdd:TIGR00618 810 ------QEIPSDEDILNLQCETLVQEEEQFLSRLEEKSAtlgEITHQLLKYEECSKQLAQLTQEQAKIIQLSDK 877
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
514-1251 |
2.86e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 65.14 E-value: 2.86e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 514 KVEDMQRNiLSKDNTVHD-----LRQQMTALQSQLQQVQLERTTLTSKLQASQAEITSLQHARQWYQQQLtlaqEARVRL 588
Cdd:pfam15921 86 QVKDLQRR-LNESNELHEkqkfyLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHEL----EAAKCL 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 589 QGEMAHIQVGQMTQagllehlkLENVSLSHQLTETQHRSIKEKERIAVQLQSIEADMLDQ-------EAAFVQIREAKTM 661
Cdd:pfam15921 161 KEDMLEDSNTQIEQ--------LRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTmhfrslgSAISKILRELDTE 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 662 VEEdLQRRLEEFEGEREQLQKVADAAAS--LEQQLEQVKLTLFQRDQQLAALQQEHLDVIKQLTSTQEAL-----QAKGQ 734
Cdd:pfam15921 233 ISY-LKGRIFPVEDQLEALKSESQNKIEllLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLeiiqeQARNQ 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 735 S------LDDLHTRYDELQARLEELQReadSREDAIHFLQNEKIVLEVALQSAKSDKEELDRGARRLEEDTEETSGLLEQ 808
Cdd:pfam15921 312 NsmymrqLSDLESTVSQLRSELREAKR---MYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHK 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 809 LRQDLAVKSNQ--------------VEHLQQE-----------TATLRKQMQKVKEQFVQQKVMVEAYRRDATSKDQLIN 863
Cdd:pfam15921 389 REKELSLEKEQnkrlwdrdtgnsitIDHLRRElddrnmevqrlEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTA 468
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 864 ELKATKKRLDSEMKELRQELIKLQGEKKTVEVEHSRLQKDMSLVHQQMAELEGHLQSVQKERDEmeihLQSLKFDKEQMI 943
Cdd:pfam15921 469 QLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQE----LQHLKNEGDHLR 544
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 944 ALTEANETLKKQIEElQQEAKKAITEQKQKMKRLGSDLSSAQKEMKTKHKAYENAVSILSRRLQEALASKEATDAELNQL 1023
Cdd:pfam15921 545 NVQTECEALKLQMAE-KDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIREL 623
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1024 RAQSTggssdpvlheKIRALEVELQNVGQSKILLEKELQEVITMTSQELEESREKVLELEDELQE-SRGFRRKIKRLEES 1102
Cdd:pfam15921 624 EARVS----------DLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVlKRNFRNKSEEMETT 693
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1103 NKKLAL-------ELEHERGKLTGL-GQSNAALREHNSILETALAKR-EADLVQLNLQ-VQAVLQRKEEEDRQMKQLVQA 1172
Cdd:pfam15921 694 TNKLKMqlksaqsELEQTRNTLKSMeGSDGHAMKVAMGMQKQITAKRgQIDALQSKIQfLEEAMTNANKEKHFLKEEKNK 773
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1173 LQVSLEKEKMEVNSLKEQMAAARIEagHNRRHFKAATLELSEVKKELQAKE--HLVQTLQAEVDELQIQdgkHSQEIAQF 1250
Cdd:pfam15921 774 LSQELSTVATEKNKMAGELEVLRSQ--ERRLKEKVANMEVALDKASLQFAEcqDIIQRQEQESVRLKLQ---HTLDVKEL 848
|
.
gi 568935679 1251 Q 1251
Cdd:pfam15921 849 Q 849
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
820-1270 |
5.21e-10 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 64.02 E-value: 5.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 820 VEHLQQETATLRKQMQKVKEQFVQQKVMVEAYRRDATSKDQLINELKATKKRLDSEMKELRQELIKLQGEKKTVEVEHSR 899
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 900 LQkdmslVHQQMAELEGHLQSVQKERDEMEIHLQSLKFDKEQMialteanETLKKQIEELQQEAKKAITEQKQKMKRLGS 979
Cdd:COG4717 128 LP-----LYQELEALEAELAELPERLEELEERLEELRELEEEL-------EELEAELAELQEELEELLEQLSLATEEELQ 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 980 DLSSAQKEMKTKHKAYENAVSILSRRLQEALASKEATDAEL--NQLRAQSTGGSSDPVLHEKIRALEVELQNVGQSKILL 1057
Cdd:COG4717 196 DLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELeaAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTI 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1058 EKELQEVITMTSQELEESREKVLELEDELQESRGFRRKI----KRLEESNKKLALELEHERGKLTGLGQSNAALREHNSI 1133
Cdd:COG4717 276 AGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEeleeEELEELLAALGLPPDLSPEELLELLDRIEELQELLRE 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1134 LETalAKREADLVQLNLQVQAVLQRKEEEDRQMKQLVQALQVSLEKEKMEVNSLKEQMAAARIEAGHnrrhfKAATLELS 1213
Cdd:COG4717 356 AEE--LEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEE-----LLEALDEE 428
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 568935679 1214 EVKKELQAKEHLVQTLQAEVDELQIQDGKHSQEIAQFQT--ELAEARTQLQLLQKKLDE 1270
Cdd:COG4717 429 ELEEELEELEEELEELEEELEELREELAELEAELEQLEEdgELAELLQELEELKAELRE 487
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
648-1342 |
7.03e-10 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 63.91 E-value: 7.03e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 648 QEAAFVQIREAKTMVEEDLQRRLEEFEGEREQLQKVADAAASLEQ----------QLEQVKLTLFQ-RDQQLAALQQEHL 716
Cdd:TIGR00606 232 QLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSrkkqmekdnsELELKMEKVFQgTDEQLNDLYHNHQ 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 717 DVIK----QLTSTQEALQAKGQSLDDLHTRYDELQARLEELQREADSREDaiHFLQNEKIVLEVALQSaksDKEELDRGA 792
Cdd:TIGR00606 312 RTVRekerELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQE--HIRARDSLIQSLATRL---ELDGFERGP 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 793 --------------RRLEEDTEETSGLLEQLRQDLAVKSNQVEHLQQETATLRKQMQKVKEQFVQQK-----VMVEAYRR 853
Cdd:TIGR00606 387 fserqiknfhtlviERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQeelkfVIKELQQL 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 854 DATSKDQLINELKATKKRLDSEMKELRQELIKLQGEKKTVEVEHSRLQKDMSLVHQQMAELEGHLQSVQK----ERDEME 929
Cdd:TIGR00606 467 EGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQmemlTKDKMD 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 930 IHLQSLKFDKEQMIALTEANETL--KKQIEELQQEAKKAITEQKQKMKRLGSDLSSA---QKEMKTKHKAYENAVSILSR 1004
Cdd:TIGR00606 547 KDEQIRKIKSRHSDELTSLLGYFpnKKQLEDWLHSKSKEINQTRDRLAKLNKELASLeqnKNHINNELESKEEQLSSYED 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1005 RLQEALASkEATDAELNQLRAQSTGGSSD--------PVLHEKIRALEVELQN---VGQSKILLEKELQEVITMTSQELE 1073
Cdd:TIGR00606 627 KLFDVCGS-QDEESDLERLKEEIEKSSKQramlagatAVYSQFITQLTDENQSccpVCQRVFQTEAELQEFISDLQSKLR 705
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1074 ESREKVLELEDELQESRGFRRKIKRLEESNKKLALELEHE----RGKLTGLGQSNAALR----EHNSILETALAKRE-AD 1144
Cdd:TIGR00606 706 LAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEipelRNKLQKVNRDIQRLKndieEQETLLGTIMPEEEsAK 785
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1145 LVQLNLQVQAVLQRK-EEEDRQMKQLVQALQ-VSLEKEKMEVNSLKEQmaaarieaghNRRHFKAATLELSEVKKELQAK 1222
Cdd:TIGR00606 786 VCLTDVTIMERFQMElKDVERKIAQQAAKLQgSDLDRTVQQVNQEKQE----------KQHELDTVVSKIELNRKLIQDQ 855
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1223 EHLVQTLQAEVDEL---QIQDGKHSQEIAQFQTELAEARTQLQLLQKKLDEQMSQQPTGSQEMEDLKWELDQ-------- 1291
Cdd:TIGR00606 856 QEQIQHLKSKTNELkseKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEElisskets 935
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*...
gi 568935679 1292 ---KEREIQSLKQQLD----LTEQQGKKELEGTQQTLQTIKSELEMVQEDLSETQKDK 1342
Cdd:TIGR00606 936 nkkAQDKVNDIKEKVKnihgYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQ 993
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
612-1327 |
8.09e-10 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 63.59 E-value: 8.09e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 612 ENVSLSHQLTETQHRSIKEKERIAVQLQS-IEADMLDQEAAFVQIREAKTMVEEDLQRRLEEFEGEREQLQKvadaaaSL 690
Cdd:pfam05483 162 ETCARSAEKTKKYEYEREETRQVYMDLNNnIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKK------EI 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 691 EQQLEQVKLTLFQRDQQ------LAALQQEHLDVIKQLtstQEALQAKGQSLDDLHTRYDELQARLEELqreadsredai 764
Cdd:pfam05483 236 NDKEKQVSLLLIQITEKenkmkdLTFLLEESRDKANQL---EEKTKLQDENLKELIEKKDHLTKELEDI----------- 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 765 hflqneKIVLEVALQSAKSDKEELDRGARRLEEDTEETSGLLEQLRQDLAVKSNQVEHLQQETATLRKQMQKVKEQFVQQ 844
Cdd:pfam05483 302 ------KMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKN 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 845 KVMVEAYRRDATSKDQLINELKATKKRLDSEMKELRqeliKLQGEKKTVEVEHSRLQKDMSLVHQQMAELEGHLQSVQKE 924
Cdd:pfam05483 376 EDQLKIITMELQKKSSELEEMTKFKNNKEVELEELK----KILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKE 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 925 RDEMEIhlqslkfdkeQMIALTEANETLKKQIEELQQEAKKaiteQKQKMKRLGSDLSSAQKEMKTKHKAYENAVSILSR 1004
Cdd:pfam05483 452 IHDLEI----------QLTAIKTSEEHYLKEVEDLKTELEK----EKLKNIELTAHCDKLLLENKELTQEASDMTLELKK 517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1005 RLQEALASKEATDAELNQLRAqstggssdpvLHEKIRALEVELQNVgqskillEKELQEVITMTSQELEESREKVLELED 1084
Cdd:pfam05483 518 HQEDIINCKKQEERMLKQIEN----------LEEKEMNLRDELESV-------REEFIQKGDEVKCKLDKSEENARSIEY 580
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1085 ELQESRgfrRKIKRLEESNKKLALELEHERGKLTGLGQSNAALREHNSILETALAKREADLVQLNLQVQAVLQRKEEedr 1164
Cdd:pfam05483 581 EVLKKE---KQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEE--- 654
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1165 qmkqLVQALQVSLEKEKMEVNSLKEQMAAArieaghnrrhfKAATLELSEVKKELQAKehlvqtLQAEVDELQIQDGKHS 1244
Cdd:pfam05483 655 ----IIDNYQKEIEDKKISEEKLLEEVEKA-----------KAIADEAVKLQKEIDKR------CQHKIAEMVALMEKHK 713
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1245 QeiaQFQTELAEARTQLQLLQKKLDEQMSQQPTGSQEMEDLKWELdqkereiQSLKQQLDLTEQQGKKELEGTQQTLQTI 1324
Cdd:pfam05483 714 H---QYDKIIEERDSELGLYKNKEQEQSSAKAALEIELSNIKAEL-------LSLKKQLEIEKEEKEKLKMEAKENTAIL 783
|
...
gi 568935679 1325 KSE 1327
Cdd:pfam05483 784 KDK 786
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
626-1388 |
9.59e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 63.62 E-value: 9.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 626 RSIKEKERIAVQLQSIEADMLDQEAAFVQIREAKTMVEEDLQRRLEE---FEGER--EQLQKVADaaaslEQQLEQVKLT 700
Cdd:PTZ00121 1158 RKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAarkAEEERkaEEARKAED-----AKKAEAVKKA 1232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 701 LFQRDQQLAALQQEHLDVIKQLTSTQEALQAKgqsLDDLHTRYDELQARLEELQREADSREDAIHFLQNEkivlEVALQS 780
Cdd:PTZ00121 1233 EEAKKDAEEAKKAEEERNNEEIRKFEEARMAH---FARRQAAIKAEEARKADELKKAEEKKKADEAKKAE----EKKKAD 1305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 781 AKSDKEELDRGARRLEEDTEETSGLLEQLRQDLAVKSNQVEHLQQETATLRKQMQKVKEQFVQQKVMVEAYRRDATSKDQ 860
Cdd:PTZ00121 1306 EAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKK 1385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 861 LINELKATK--KRLDSEMKELRQELIKLQGEKKTV-EVEHSRLQKDMSLVHQQMAELEGHLQSVQKERDEMEIHLQSLKF 937
Cdd:PTZ00121 1386 KAEEKKKADeaKKKAEEDKKKADELKKAAAAKKKAdEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKK 1465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 938 DKEQMIAlteanETLKKQIEELQQ--EAKKAITEQKQKMKRlgsdlssAQKEMKTKHKAYENAVSILSRRLQEALASKEA 1015
Cdd:PTZ00121 1466 AEEAKKA-----DEAKKKAEEAKKadEAKKKAEEAKKKADE-------AKKAAEAKKKADEAKKAEEAKKADEAKKAEEA 1533
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1016 TDAElnQLRAQSTGGSSDPVLH-EKIRALEvELQNVGQSKilLEKELQEVITMTSQELEESREKVLELEDELQESRgfrr 1094
Cdd:PTZ00121 1534 KKAD--EAKKAEEKKKADELKKaEELKKAE-EKKKAEEAK--KAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEE---- 1604
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1095 KIKRLEESNKKlalelEHERGKLTGLGQSnaalrEHNSILETALAKREADLVQLNLQVqavlqRKEEEDRQMKQLVQALQ 1174
Cdd:PTZ00121 1605 KKMKAEEAKKA-----EEAKIKAEELKKA-----EEEKKKVEQLKKKEAEEKKKAEEL-----KKAEEENKIKAAEEAKK 1669
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1175 VSLEKEKMEvnslkeqmaAARIEAGHNRRHFKAATLELSEVKKELQAKEHLVQTLQaEVDELQIQDGKHSQEIAQFQTEL 1254
Cdd:PTZ00121 1670 AEEDKKKAE---------EAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKK-KAEELKKAEEENKIKAEEAKKEA 1739
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1255 AEARTQLQLLQKklDEQMSQQPTGSQEMEDLKWELDQKEREiQSLKQQLDLTEQQGKKELEgtqQTLQTIKSELEMVQED 1334
Cdd:PTZ00121 1740 EEDKKKAEEAKK--DEEEKKKIAHLKKEEEKKAEEIRKEKE-AVIEEELDEEDEKRRMEVD---KKIKDIFDNFANIIEG 1813
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*
gi 568935679 1335 LSE-TQKDKFMLQAKVSELKNNMKTLLQQNQQLKLDLRRGAAKKKEPKGESNSSS 1388
Cdd:PTZ00121 1814 GKEgNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEA 1868
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
722-966 |
1.55e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 61.70 E-value: 1.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 722 LTSTQEALQAKGQSLDDLHTRYDELQARLEELQREADSREDAIHFLQNEKIVLEVALQSAKSDKEELDRGARRLEEDTEE 801
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 802 TSGLLEQLRQDLAvksNQVEHLQQETATLRKQMQKVKEQFVQQKVMVEAYRRDATSKDQLINELKATKKRLDSEMKELRQ 881
Cdd:COG4942 95 LRAELEAQKEELA---ELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 882 ELIKLQGEKKTVEVEHSRLQKDMSLVHQQMAELEghlqsvqkerdemeihlQSLKFDKEQMIALTEANETLKKQIEELQQ 961
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKAERQKLLARLE-----------------KELAELAAELAELQQEAEELEALIARLEA 234
|
....*
gi 568935679 962 EAKKA 966
Cdd:COG4942 235 EAAAA 239
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
830-1303 |
2.66e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 62.24 E-value: 2.66e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 830 LRKQMQKVKEQFVQQKVMVEAYRRDATSKDQLiNELKATKKRLDSEMKELRQELikLQGEKKTVEVEHSRLQkdmslvhQ 909
Cdd:COG4913 240 AHEALEDAREQIELLEPIRELAERYAAARERL-AELEYLRAALRLWFAQRRLEL--LEAELEELRAELARLE-------A 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 910 QMAELEGHLQSVQKERDEMEIHLQSLKFDKEqmialteanETLKKQIEELQQEAKkaitEQKQKMKRLGSDLSSAQKEMK 989
Cdd:COG4913 310 ELERLEARLDALREELDELEAQIRGNGGDRL---------EQLEREIERLERELE----ERERRRARLEALLAALGLPLP 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 990 TKHKAYENAVSILSRRLQEALASKEATDAELNQLRAQSTGgssdpvLHEKIRALEVELQNVGQSKILLEKELQEVITMTS 1069
Cdd:COG4913 377 ASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRD------LRRELRELEAEIASLERRKSNIPARLLALRDALA 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1070 QELEESRE---------KVLELEDELQES-----RGFRRKI-----------KRLEESNKKLALELEHER---------- 1114
Cdd:COG4913 451 EALGLDEAelpfvgeliEVRPEEERWRGAiervlGGFALTLlvppehyaaalRWVNRLHLRGRLVYERVRtglpdperpr 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1115 -------GKL---------------------------------------TGLGQSNAALREHN--------SIL----ET 1136
Cdd:COG4913 531 ldpdslaGKLdfkphpfrawleaelgrrfdyvcvdspeelrrhpraitrAGQVKGNGTRHEKDdrrrirsrYVLgfdnRA 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1137 ALAKREADLVQLNLQVQAVLQRKEEEDRQMKQLVQALQVSLEKEKMEVNSLKEQMAAARIEAGHN-RRHFKAATLELSEV 1215
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAeLERLDASSDDLAAL 690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1216 KKELQAKEHLVQTLQAEVDELQIQDGKHSQEIAQFQTELAEARTQLQ------------LLQKKLDEQMSQQPTgSQEME 1283
Cdd:COG4913 691 EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEaaedlarlelraLLEERFAAALGDAVE-RELRE 769
|
570 580
....*....|....*....|
gi 568935679 1284 DLKWELDQKEREIQSLKQQL 1303
Cdd:COG4913 770 NLEERIDALRARLNRAEEEL 789
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1134-1444 |
3.23e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.00 E-value: 3.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1134 LETALAKREADLVQLNLQVQAVLQRKEEEDrQMKQLVQALQVslekekMEVNSLKEQMAAARIEAGHNRRHFKAATLELS 1213
Cdd:TIGR02168 191 LEDILNELERQLKSLERQAEKAERYKELKA-ELRELELALLV------LRLEELREELEELQEELKEAEEELEELTAELQ 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1214 EVKKELQAKEHLVQTLQAEVDELQIQDGKHSQEIAQFQTELAEARTQLQLLQKKLDEQMSQQPTGSQEMEDLKWELDQKE 1293
Cdd:TIGR02168 264 ELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELE 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1294 REIQSLKQQLDLTEQQGKK---ELEGTQQTLQTIKSELEMVQEDLSETQKDKFMLQAKVSELKNNMKTLLQQNQQLKLDL 1370
Cdd:TIGR02168 344 EKLEELKEELESLEAELEEleaELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEI 423
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568935679 1371 RRGAAKKKEPKGESNSSSPATPIKIPD----CPVPASLLEELLRPPPAVSKEPLKNLNNCLQQLKQEMDSLQRQMEEH 1444
Cdd:TIGR02168 424 EELLKKLEEAELKELQAELEELEEELEelqeELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENL 501
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
624-1358 |
3.34e-09 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 61.91 E-value: 3.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 624 QHRSIKEKERIAVQLQSIEADMLDQEAAFVQIREAKtmVEEDLQRRLEEFEGEREQLQKVADAAASLEQQLEQVKLTLFQ 703
Cdd:pfam02463 198 QELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLK--LNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENK 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 704 RDQQLAALQQEHLDVI-KQLTSTQEALQAKGQSLDDLHTRYDELQARLEELQREADSREDAIHFLQNEKIVLEV---ALQ 779
Cdd:pfam02463 276 EEEKEKKLQEEELKLLaKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIkreAEE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 780 SAKSDKEELDRGARRLEEDTEETSGLLEQLRQDLAVKSNQVE---HLQQETATLRKQMQKVKEQFVQQKVMVEAYRRDAT 856
Cdd:pfam02463 356 EEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELelkSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEE 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 857 SKDQLINELKATKKRLdsEMKELRQELIKLQGEKKTVEVEHSRLQKDMSLVHQQMAELEGHLQ---SVQKERDEMEIHLQ 933
Cdd:pfam02463 436 EESIELKQGKLTEEKE--ELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEersQKESKARSGLKVLL 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 934 SLKFDKEQMIALTEANETLKKQIEELQQEAK----------KAITEQKQKMKRLGSDLSSAQKEMKTKHK-------AYE 996
Cdd:pfam02463 514 ALIKDGVGGRIISAHGRLGDLGVAVENYKVAistavivevsATADEVEERQKLVRALTELPLGARKLRLLipklklpLKS 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 997 NAVSILSRRLQEALASKEATDAELNQLRAQSTGGSSDPVLHEKIRALEVELQNVGQ-SKILLEKELQEVITMTSQELEES 1075
Cdd:pfam02463 594 IAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRkGVSLEEGLAEKSEVKASLSELTK 673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1076 REKVLELEDELQESRGFRRKIKRLEESNKKLAL----ELEHERGKLTGLGQSNAALREHNSILETALAKREADLVQLNLQ 1151
Cdd:pfam02463 674 ELLEIQELQEKAESELAKEEILRRQLEIKKKEQrekeELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEE 753
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1152 VQAVLQRKEEEDRQMKQLVQALQVSLEKEKMEVNSLKEQMAAARIEAGHNRRHFKAATLELSEVKKELQAKEHLVQTLQA 1231
Cdd:pfam02463 754 KSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEE 833
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1232 EVDELQIQDGKhsqEIAQFQTELAEARTQLQLLQKKLDEQMSQQPTGSQEMEDLKWELDQKEREIQSLKQQLDLTEQQGK 1311
Cdd:pfam02463 834 ELEELALELKE---EQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLN 910
|
730 740 750 760
....*....|....*....|....*....|....*....|....*..
gi 568935679 1312 KELEGTQQTLQTIKSELEMVQEDLSETQKDKFMLQAKVSELKNNMKT 1358
Cdd:pfam02463 911 LLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEE 957
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
613-1387 |
4.92e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.31 E-value: 4.92e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 613 NVSLSHQLTETQHRSIKEKERiavqlqsiEADMLDQEAAFVQIREAKTMVEEDLQRRLEEFEGEREQLQK-VADAAASLE 691
Cdd:PTZ00121 1025 NIEKIEELTEYGNNDDVLKEK--------DIIDEDIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDnRADEATEEA 1096
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 692 QQL-EQVKLTLF-----QRDQQLAALQQEHLDVIKQLTSTQEALQAKgQSLDDLHTRYDELQARLEELQREADSR--EDA 763
Cdd:PTZ00121 1097 FGKaEEAKKTETgkaeeARKAEEAKKKAEDARKAEEARKAEDARKAE-EARKAEDAKRVEIARKAEDARKAEEARkaEDA 1175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 764 IHFLQNEK-IVLEVALQSAKSDKEELDRGARRLEED--TEETSGLLEQLRQDLAVKSNQVEHLQQETATLRKQMQKVKEQ 840
Cdd:PTZ00121 1176 KKAEAARKaEEVRKAEELRKAEDARKAEAARKAEEErkAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIR 1255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 841 FVQQKVMVEAYRRDATskdqlineLKATKKRLDSEMKElRQELIKLQGEKKTVEVEHSRLQKDMSLVHQQMAELEGHLQS 920
Cdd:PTZ00121 1256 KFEEARMAHFARRQAA--------IKAEEARKADELKK-AEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEE 1326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 921 VQKERDEMEIHLQSLKFDKEQMIALTEANETLKKQIEELQQEAKKAITEQKQKMKRLGSDLSSAQKEMKTKHKAYENAVS 1000
Cdd:PTZ00121 1327 AKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKK 1406
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1001 ilSRRLQEALASKEATDAELNQLRAQSTGGSSDPVLHEKIRALEV--ELQNVGQSKILLEKELQEVITMTSQELEESREK 1078
Cdd:PTZ00121 1407 --ADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAkkKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKK 1484
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1079 VLELEDELQESRGFRRKIKRLEESNKKlALELEHERGKLTGLGQSNAALREHNSILETALAKREADLVQLNLQV------ 1152
Cdd:PTZ00121 1485 ADEAKKKAEEAKKKADEAKKAAEAKKK-ADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELkkaeek 1563
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1153 -QAVLQRKEEEDRQMK-QLVQALQVSLEKEKMEVNSLKEQMAAARIEAGHNRRHFKAATLELSEVKKELQAKEHLVQTLQ 1230
Cdd:PTZ00121 1564 kKAEEAKKAEEDKNMAlRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEA 1643
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1231 AEV---DELQIQDGKHSQEIAQFQTELAEARTQLQLLQKKLDEQMSQQPTGSQEMEDLK--WELDQKEREIQSLKQQLDL 1305
Cdd:PTZ00121 1644 EEKkkaEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKkaEELKKKEAEEKKKAEELKK 1723
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1306 TEQQGKKELEGTQQTLQTIKSELEMVQEDLSETQK---DKFMLQAKVSELKNNMKTLLQQNQQLKLDLRRGAAKKKEPKG 1382
Cdd:PTZ00121 1724 AEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKiahLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDI 1803
|
....*
gi 568935679 1383 ESNSS 1387
Cdd:PTZ00121 1804 FDNFA 1808
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
637-1149 |
7.99e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 60.44 E-value: 7.99e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 637 QLQSIEADMLD-QEAAFVQIREAKTMVEE--DLQRRLEEFEGEREQLQKVADAAASLEQQLEQVKLTLFQRDQQLAALQQ 713
Cdd:PRK02224 252 ELETLEAEIEDlRETIAETEREREELAEEvrDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLE 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 714 EHLDVIKQLTSTQEALQakgQSLDDLHTRYDELQARLEELQREADSREDAIhflqnekivlevalQSAKSDKEELDRGAR 793
Cdd:PRK02224 332 ECRVAAQAHNEEAESLR---EDADDLEERAEELREEAAELESELEEAREAV--------------EDRREEIEELEEEIE 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 794 RLEE---DTEETSGLLEQLRQDLAvksNQVEHLQQETATLRKQMQKVKEQFVQQKVMVEAYRRDATSKDQLINELKATKK 870
Cdd:PRK02224 395 ELRErfgDAPVDLGNAEDFLEELR---EERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 871 RLDSEMKELRQELIKLQGEKKTVEVEHSRLqkdmslvhQQMAELEGHLQSVQKERDEME----IHLQSLKFDKEQMIALT 946
Cdd:PRK02224 472 EDRERVEELEAELEDLEEEVEEVEERLERA--------EDLVEAEDRIERLEERREDLEeliaERRETIEEKRERAEELR 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 947 EANETLKKQIEELQQEAKKAITEQKQKMKRLGsDLSSAQKEMKTKHKAYENAVSILSRRLQ-----EALASKEATDAELN 1021
Cdd:PRK02224 544 ERAAELEAEAEEKREAAAEAEEEAEEAREEVA-ELNSKLAELKERIESLERIRTLLAAIADaedeiERLREKREALAELN 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1022 QLRAQSTGGSSdpvlhEKIRALEVELQNVGQSKILLEKE-LQEVITMTSQELEESREKvlelEDELQESRG-FRRKIKRL 1099
Cdd:PRK02224 623 DERRERLAEKR-----ERKRELEAEFDEARIEEAREDKErAEEYLEQVEEKLDELREE----RDDLQAEIGaVENELEEL 693
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 568935679 1100 EESNKKLAlELEHERGKLtglgqsnAALREHNSILETALAKREADLVQLN 1149
Cdd:PRK02224 694 EELRERRE-ALENRVEAL-------EALYDEAEELESMYGDLRAELRQRN 735
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
629-1103 |
9.45e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 60.31 E-value: 9.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 629 KEKERIAVQLQSIEADMLDQEAAFVQIREAKTMVEEDLQ----RRLEEFEGEREQLQK----VADAAASLEQQLEQVKLT 700
Cdd:COG4913 295 AELEELRAELARLEAELERLEARLDALREELDELEAQIRgnggDRLEQLEREIERLEReleeRERRRARLEALLAALGLP 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 701 LFQRDQQLAALQQEHldvikqltstQEALQAKGQSLDDLHTRYDELQARLEELQREADSREDAIHFLQNEKIVLEVALQS 780
Cdd:COG4913 375 LPASAEEFAALRAEA----------AALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLA 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 781 AKS--------DKEELDRGARRLEEDTEETS------GLLEQLRQDLAVKSnqvEHLQQETATLRKQMQKVKEQFVQQKV 846
Cdd:COG4913 445 LRDalaealglDEAELPFVGELIEVRPEEERwrgaieRVLGGFALTLLVPP---EHYAAALRWVNRLHLRGRLVYERVRT 521
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 847 MVEAYRRDATSKDQLINEL------------------------------------------------------------- 865
Cdd:COG4913 522 GLPDPERPRLDPDSLAGKLdfkphpfrawleaelgrrfdyvcvdspeelrrhpraitragqvkgngtrhekddrrrirsr 601
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 866 -------KATKKRLDSEMKELRQELIKLQGEKKTVEVEHSRLQKDMSL--VHQQMAELEGHLQSVQKERDEMEIHLQSLK 936
Cdd:COG4913 602 yvlgfdnRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREAlqRLAEYSWDEIDVASAEREIAELEAELERLD 681
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 937 FDKEQMIALTEANETLKKQIEELQQEAKKAITEQKQKMKRLgSDLSSAQKEMKTKHKAYENAVSILSRRLQEALASKEAT 1016
Cdd:COG4913 682 ASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKEL-EQAEEELDELQDRLEAAEDLARLELRALLEERFAAALG 760
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1017 DAELNQLRAQstggssdpvLHEKIRALEVELQNVGQSKILLEKELQEVITMTSQELE---ESREKVLELEDELQESR--G 1091
Cdd:COG4913 761 DAVERELREN---------LEERIDALRARLNRAEEELERAMRAFNREWPAETADLDadlESLPEYLALLDRLEEDGlpE 831
|
570
....*....|..
gi 568935679 1092 FRRKIKRLEESN 1103
Cdd:COG4913 832 YEERFKELLNEN 843
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
392-1346 |
1.06e-08 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 60.19 E-value: 1.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 392 MESSLAEPQDELLQILKDkrrLEGQVEALSLEASQALQEKAELQAQLAALSTRLQAQVEHSHSSQQKQDSLSSEVDTLKQ 471
Cdd:pfam01576 62 MRARLAARKQELEEILHE---LESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEE 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 472 SCWDLERAMTDLQ---SMLEAKNASLASSNNDLQVAEEQYQRLMAKVEDMQRNILSKDNTVHDLRQQMTALQSQLQQVQL 548
Cdd:pfam01576 139 DILLLEDQNSKLSkerKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGEST 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 549 ERTTLTSKLQASQAEITSlQHARQWYQQQLTLAQEARVRLQGEMAHIQVGQMtQAGLLEHLK-LENVSLSHQLTETQHRS 627
Cdd:pfam01576 219 DLQEQIAELQAQIAELRA-QLAKKEEELQAALARLEEETAQKNNALKKIREL-EAQISELQEdLESERAARNKAEKQRRD 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 628 IKEK-ERIAVQLQsieaDMLDQEAAFVQIREAKTMVEEDLQRRLEE----FEGEREQL-QKVADAAASLEQQLEQVKLTL 701
Cdd:pfam01576 297 LGEElEALKTELE----DTLDTTAAQQELRSKREQEVTELKKALEEetrsHEAQLQEMrQKHTQALEELTEQLEQAKRNK 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 702 FQRDQQLAALQQEHLDVIKQLTSTQEALQAKGQSLDDLHTRYDELQARLEELQREADSREDAIHFLQNEKIVLEVALQSA 781
Cdd:pfam01576 373 ANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEA 452
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 782 KSDKEELDRGARRLEEDTEETSGLL-EQLRQDLAVkSNQVEHLQQETATLRKQMQKvkeqfvqqkvMVEAYRRDATSKDQ 860
Cdd:pfam01576 453 EGKNIKLSKDVSSLESQLQDTQELLqEETRQKLNL-STRLRQLEDERNSLQEQLEE----------EEEAKRNVERQLST 521
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 861 LINELKATKKRLDSEMKELRQeliklqgekktVEVEHSRLQKDMSLVHQQMAELEGHLQSVQKERDEMEIHLQSLKFDKE 940
Cdd:pfam01576 522 LQAQLSDMKKKLEEDAGTLEA-----------LEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLD 590
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 941 QmialteaNETLKKQIEELQQEAKKAITEQKQKMKRLGSDLSSAQKEMKTKhkayENAVSILSRRLQEALASKEATDAEL 1020
Cdd:pfam01576 591 H-------QRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREK----ETRALSLARALEEALEAKEELERTN 659
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1021 NQLRA--------QSTGGSSDPVLHEKIRALEVELQNVGQSKILLEKELQEV------ITMTSQELEESREKVLELEDEL 1086
Cdd:pfam01576 660 KQLRAemedlvssKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQATedaklrLEVNMQALKAQFERDLQARDEQ 739
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1087 QESrgfrrKIKRLEESNKKLALELEHERgkltglgqsnaalrEHNSILETALAKREADLVQLNLQVQAVLQRKEEEDRQM 1166
Cdd:pfam01576 740 GEE-----KRRQLVKQVRELEAELEDER--------------KQRAQAVAAKKKLELDLKELEAQIDAANKGREEAVKQL 800
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1167 KQLvQALQVSLEKEKMEVNSLKEQMAAARIEaghNRRHFKAATLELSEVKKELQAKEHLVQTLQAEVDELQ--------- 1237
Cdd:pfam01576 801 KKL-QAQMKDLQRELEEARASRDEILAQSKE---SEKKLKNLEAELLQLQEDLAASERARRQAQQERDELAdeiasgasg 876
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1238 ---IQDGKHSQE--IAQFQTELAEARTQLQLLQKK----------LDEQMSQQPTGSQEMEDLKWELDQKERE------- 1295
Cdd:pfam01576 877 ksaLQDEKRRLEarIAQLEEELEEEQSNTELLNDRlrkstlqveqLTTELAAERSTSQKSESARQQLERQNKElkaklqe 956
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1296 -------------------IQSLKQQLDLTEQ-------------------------------QGKKELEGTQQTLQTIK 1325
Cdd:pfam01576 957 megtvkskfkssiaaleakIAQLEEQLEQESRerqaanklvrrtekklkevllqvederrhadQYKDQAEKGNSRMKQLK 1036
|
1050 1060
....*....|....*....|.
gi 568935679 1326 SELEMVQEDLSETQKDKFMLQ 1346
Cdd:pfam01576 1037 RQLEEAEEEASRANAARRKLQ 1057
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
776-1333 |
1.79e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 59.28 E-value: 1.79e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 776 VALQSAKSDKEELDRGARRLEEDTEETS--GLLEQLRQDLAVKSNQVEHLQQETATLRKQMQKVKEqfvqqkvMVEAYRR 853
Cdd:PRK02224 176 LGVERVLSDQRGSLDQLKAQIEEKEEKDlhERLNGLESELAELDEEIERYEEQREQARETRDEADE-------VLEEHEE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 854 DATSKDQL---INELKATKKRLDSEMKELRQELIKLQGEKKTVEVEHSRLQKDMSL-------VHQQMAELEGHLQSVqk 923
Cdd:PRK02224 249 RREELETLeaeIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLddadaeaVEARREELEDRDEEL-- 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 924 eRDEMEIHLQSLKFDKEQMIALTEANETLKKQIEELQQEAK---KAITEQKQKMKRLGSDLSSAQKEMKTKHKAYENAVS 1000
Cdd:PRK02224 327 -RDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAeleSELEEAREAVEDRREEIEELEEEIEELRERFGDAPV 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1001 ILSR---RLQEALASKEATDAELNQLRAqsTGGSSDPVLHEKIRALEVEL-----QNVGQSKIL--LEKELQEVITMTSq 1070
Cdd:PRK02224 406 DLGNaedFLEELREERDELREREAELEA--TLRTARERVEEAEALLEAGKcpecgQPVEGSPHVetIEEDRERVEELEA- 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1071 ELEESREKVLELE---DELQESRGFRRKIKRLEESNKKLALELEHERGKLTGLGQSNAALREHNSILETALAKREADLVQ 1147
Cdd:PRK02224 483 ELEDLEEEVEEVEerlERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAE 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1148 LNLQVQAVLQRKEEEDRQMKQLVQALQvSLEKekmeVNSLKEQMAAARIEAGhNRRHFKAATLELSEVKKE-LQAKEHLV 1226
Cdd:PRK02224 563 AEEEAEEAREEVAELNSKLAELKERIE-SLER----IRTLLAAIADAEDEIE-RLREKREALAELNDERRErLAEKRERK 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1227 QTLQAEVDELQIQDGkhsqeiaqfQTELAEARTQLQLLQKKLDEQmsqqptgSQEMEDLKWELDQKEREIQSLKqqlDLT 1306
Cdd:PRK02224 637 RELEAEFDEARIEEA---------REDKERAEEYLEQVEEKLDEL-------REERDDLQAEIGAVENELEELE---ELR 697
|
570 580
....*....|....*....|....*..
gi 568935679 1307 EQqgKKELEGTQQTLQTIKSELEMVQE 1333
Cdd:PRK02224 698 ER--REALENRVEALEALYDEAEELES 722
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
619-844 |
2.18e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 59.16 E-value: 2.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 619 QLTETQHRSIKEKERIAvQLQSIEADMLDQEAAFVQIREAKTMVE----EDLQRRLEEFEGEREQLQkvaDAAASLEQQL 694
Cdd:COG4913 236 DLERAHEALEDAREQIE-LLEPIRELAERYAAARERLAELEYLRAalrlWFAQRRLELLEAELEELR---AELARLEAEL 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 695 EQVKltlfqrdQQLAALQQEHLDVIKQLtstqeaLQAKGQSLDDLHTRYDELQARLEELQREADSREDAIHFLQ----NE 770
Cdd:COG4913 312 ERLE-------ARLDALREELDELEAQI------RGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGlplpAS 378
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568935679 771 KIVLEVALQSAKSDKEELDRGARRLEEDTEETSGLLEQLRQDLAVKSNQVEHLQQETATLRKQMQKVKEQFVQQ 844
Cdd:COG4913 379 AEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEA 452
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
619-1355 |
5.59e-08 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 57.75 E-value: 5.59e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 619 QLTETQHRSIKEKERIAVQLQSiEADMLDQEAAFVQIREAKTMVEedlQRRLEeFEGEREQLQKVADAAASLEQQLeQVK 698
Cdd:TIGR00606 305 DLYHNHQRTVREKERELVDCQR-ELEKLNKERRLLNQEKTELLVE---QGRLQ-LQADRHQEHIRARDSLIQSLAT-RLE 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 699 LTLFQRDqqlaALQQEHLDVIKQLTSTQEALQAK--GQSLDDLHTRYDELQARLEELQreaDSREDAIHFLQNEKIVLEV 776
Cdd:TIGR00606 379 LDGFERG----PFSERQIKNFHTLVIERQEDEAKtaAQLCADLQSKERLKQEQADEIR---DEKKGLGRTIELKKEILEK 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 777 A---LQSAKSDKEELDRGARRLEEDTEETSGLLEQL-----RQDLAVKSNQVEHLQQETATLRKQMQKVKEQFVQQ---- 844
Cdd:TIGR00606 452 KqeeLKFVIKELQQLEGSSDRILELDQELRKAERELskaekNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLnhht 531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 845 --KVMVEAYRRDATSKDQLINELKA---------------------TKKRLDSEMKELRQELIKLQGEKKTVEVEHSRLQ 901
Cdd:TIGR00606 532 ttRTQMEMLTKDKMDKDEQIRKIKSrhsdeltsllgyfpnkkqledWLHSKSKEINQTRDRLAKLNKELASLEQNKNHIN 611
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 902 KDMSLVHQQMAELEGHLQSV---QKERDEMEIHLQSLKFDKEQMIALTEANETLKKQIEELQQEAK------KAITEQKQ 972
Cdd:TIGR00606 612 NELESKEEQLSSYEDKLFDVcgsQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQsccpvcQRVFQTEA 691
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 973 KMKRLGSDLSSAQKEMKTKHKAYENAVSILSRRLQEALASKEATDAELNQLRAQStggssdPVLHEKIRALEVELQ---- 1048
Cdd:TIGR00606 692 ELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEI------PELRNKLQKVNRDIQrlkn 765
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1049 NVGQSKILLE---------KELQEVITMTSQ---ELEESREKVLELEDELQESRGFRRkikrLEESNKKLAlELEHERGK 1116
Cdd:TIGR00606 766 DIEEQETLLGtimpeeesaKVCLTDVTIMERfqmELKDVERKIAQQAAKLQGSDLDRT----VQQVNQEKQ-EKQHELDT 840
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1117 LTGLGQSNAALREHNSILETALAKREADLVQLNLQVQAVLQRKEEEDRQMKQL---VQALQVSLEKEKMEVNSLKEQMA- 1192
Cdd:TIGR00606 841 VVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELsteVQSLIREIKDAKEQDSPLETFLEk 920
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1193 -AARIEAGHNRRHF--KAATLELSEVKKELQAKEHLVQTLqaevdELQIQDGKHSQeiaqfqteLAEARTQLQLLQKKLD 1269
Cdd:TIGR00606 921 dQQEKEELISSKETsnKKAQDKVNDIKEKVKNIHGYMKDI-----ENKIQDGKDDY--------LKQKETELNTVNAQLE 987
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1270 EQMSQQPTGSQEMEDLKWELDQKEREIQSLKQQLDLTEQQGK-KELEGTQQTLQTikselEMVQEDLSETQKDKFMLQAK 1348
Cdd:TIGR00606 988 ECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENElKEVEEELKQHLK-----EMGQMQVLQMKQEHQKLEEN 1062
|
....*..
gi 568935679 1349 VSELKNN 1355
Cdd:TIGR00606 1063 IDLIKRN 1069
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
393-771 |
1.35e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 56.31 E-value: 1.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 393 ESSLAEPQDELLQILKDKRRLEGQVEALSLeasqaLQEKAELQAQLAALSTR---LQAQVEHSHSSQQKQDSLSSEVDTL 469
Cdd:COG4717 101 EEELEELEAELEELREELEKLEKLLQLLPL-----YQELEALEAELAELPERleeLEERLEELRELEEELEELEAELAEL 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 470 KQSC--------WDLERAMTDLQSMLEAKNASLASSNNDLQVAEEQYQRLMAKVEDMQRNILSKD--NTVHDLRQQ---M 536
Cdd:COG4717 176 QEELeelleqlsLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAAleERLKEARLLlliA 255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 537 TALQSQLQQVQLERTTLTSKLQASQAEITSLQHARQWYQQQLTLAQEARVRLQGEMAHIQVGQMTQAGLLEHLKLENvSL 616
Cdd:COG4717 256 AALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPP-DL 334
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 617 SHQLTETQHRSIKEKERIAVQLQSIEADmLDQEAAFVQIRE----AKTMVEEDLQRRLEEFEGEREQLQKVADAAASLEQ 692
Cdd:COG4717 335 SPEELLELLDRIEELQELLREAEELEEE-LQLEELEQEIAAllaeAGVEDEEELRAALEQAEEYQELKEELEELEEQLEE 413
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 693 QL------------EQVKLTLFQRDQQLAALQQEHLDVIKQLTSTQEALQA--KGQSLDDLHTRYDELQARLEELQREAD 758
Cdd:COG4717 414 LLgeleellealdeEELEEELEELEEELEELEEELEELREELAELEAELEQleEDGELAELLQELEELKAELRELAEEWA 493
|
410
....*....|...
gi 568935679 759 SREDAIHFLQNEK 771
Cdd:COG4717 494 ALKLALELLEEAR 506
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
964-1354 |
2.89e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 55.41 E-value: 2.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 964 KKAITEQKQKMKRLGSDLSSAQKEMKTKhkayENAVSILSRRLQEALASKEATDAELNQLRAQSTGGSSDPV-------- 1035
Cdd:TIGR04523 25 KNIANKQDTEEKQLEKKLKTIKNELKNK----EKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKknkdkink 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1036 LHEKIRALEVELQNVGQSKILLEKE---LQEVITMTSQELEESREKVLELEDELQESRGFRRKIKRLEESNKKLALELEH 1112
Cdd:TIGR04523 101 LNSDLSKINSEIKNDKEQKNKLEVElnkLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEK 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1113 ERGKLTglgQSNAALREHNSILETALAKREAdLVQLNLQVQAVLQRKEEEDRQMKQLVQALQVSLEKEKMEVNSLKEQMA 1192
Cdd:TIGR04523 181 EKLNIQ---KNIDKIKNKLLKLELLLSNLKK-KIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLN 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1193 AARIEAGHNRRHFKAATLELSEVKKELQAKEHLVQTLQAEVDELQIQdgKHSQEIAQFQTELAEARTQLQLLQKKLDEQM 1272
Cdd:TIGR04523 257 QLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQ--KEQDWNKELKSELKNQEKKLEEIQNQISQNN 334
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1273 SQQPTGSQEMEDLKWELDQKEREIQSLKQQLDLTEQQGKKELEGTQQTLQTIKSeLEMVQEDL-SETQKDKFMLQAKVSE 1351
Cdd:TIGR04523 335 KIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKN-LESQINDLeSKIQNQEKLNQQKDEQ 413
|
...
gi 568935679 1352 LKN 1354
Cdd:TIGR04523 414 IKK 416
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
823-1337 |
3.74e-07 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 55.11 E-value: 3.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 823 LQQETATLRKQMQKVKEQFVQQKVMVEAYRRDATSKDQLINELKATKKRLDSEMKELRQEliklqgeKKTVEVEHSRLQK 902
Cdd:pfam05483 83 LYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQE-------NKDLIKENNATRH 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 903 DMSLVHQQMAELEGHLQSVQKERDEMEIHLQSLKFDKEQMIAlteanetlkkQIEELQQEAKKAITEQKQKMKRLGSDLS 982
Cdd:pfam05483 156 LCNLLKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMIL----------AFEELRVQAENARLEMHFKLKEDHEKIQ 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 983 SAQKEMKTKHKAYENAVSILSRRLQEalasKEATDAELNQLRAQSTGGSSDpvLHEKIRALEVELQNVGQSKILLEKELQ 1062
Cdd:pfam05483 226 HLEEEYKKEINDKEKQVSLLLIQITE----KENKMKDLTFLLEESRDKANQ--LEEKTKLQDENLKELIEKKDHLTKELE 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1063 EVitmtSQELEESREKVLELEDELQESRgfrRKIKRLEESNKKLALELEHERGK----LTGLGQSNAALREHNSILETAL 1138
Cdd:pfam05483 300 DI----KMSLQRSMSTQKALEEDLQIAT---KTICQLTEEKEAQMEELNKAKAAhsfvVTEFEATTCSLEELLRTEQQRL 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1139 AKREADLVQLNLQvqavLQRKEEEDRQMKQLVQALQVSLEKEKmevnslkeQMAAARIEAGHNRRHFKAATLELSEVKKE 1218
Cdd:pfam05483 373 EKNEDQLKIITME----LQKKSSELEEMTKFKNNKEVELEELK--------KILAEDEKLLDEKKQFEKIAEELKGKEQE 440
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1219 L----QAKEHLVQTLQAEVDELQIQDGKHSQEIAQFQTELAEARTQLQLLQKKLDEQMSQQPTGSQEMEDLKWELDQKER 1294
Cdd:pfam05483 441 LifllQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQE 520
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 568935679 1295 EIQSLKQQldltEQQGKKELEGTQQTLQTIKSELEMVQEDLSE 1337
Cdd:pfam05483 521 DIINCKKQ----EERMLKQIENLEEKEMNLRDELESVREEFIQ 559
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1070-1302 |
4.51e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.92 E-value: 4.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1070 QELEESREKVLELedelqesrgfRRKIKRLEESnKKLALELEHERGKLtglgqsnAALREHNSILETALAKREADLVQln 1149
Cdd:COG4913 235 DDLERAHEALEDA----------REQIELLEPI-RELAERYAAARERL-------AELEYLRAALRLWFAQRRLELLE-- 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1150 lqvqAVLQRKEEEDRQMKQLVQALQVSLEKEKMEVNSLKEQMAaariEAGHNRRhfKAATLELSEVKKELQAKEHLVQTL 1229
Cdd:COG4913 295 ----AELEELRAELARLEAELERLEARLDALREELDELEAQIR----GNGGDRL--EQLEREIERLERELEERERRRARL 364
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568935679 1230 QAEVDELQIQDGKHSQEIAQFQTELAEARTQLQLLQKKLDEQMSQQptgSQEMEDLKWELDQKEREIQSLKQQ 1302
Cdd:COG4913 365 EALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEA---EAALRDLRRELRELEAEIASLERR 434
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
396-889 |
5.35e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.54 E-value: 5.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 396 LAEPQDELLQILKDKRRLEGQVEALSLEASQalQEKAELQAQLAALSTRLQAQVEHSHSSQQKQDSLSSEVDTLKQSCWD 475
Cdd:COG4913 257 IRELAERYAAARERLAELEYLRAALRLWFAQ--RRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRG 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 476 LE-RAMTDLQSMLEAKNASLASSNNDLQVAEEQYQRLMAKV----EDMQRNILSKDNTVHDLRQQMTALQSQLQQVQLER 550
Cdd:COG4913 335 NGgDRLEQLEREIERLERELEERERRRARLEALLAALGLPLpasaEEFAALRAEAAALLEALEEELEALEEALAEAEAAL 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 551 TTLTSKLQASQAEITSLQH-----------ARQWYQQQLTLAqEARVRLQGEMahIQVG------QMTQAGLLEHLKLen 613
Cdd:COG4913 415 RDLRRELRELEAEIASLERrksniparllaLRDALAEALGLD-EAELPFVGEL--IEVRpeeerwRGAIERVLGGFAL-- 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 614 vSLshqLTETQH----RSIKEKERIAVQLQSIEADMLDQEAAFVQIrEAKTMVEE------DLQRRLEEFEGEREQLQKV 683
Cdd:COG4913 490 -TL---LVPPEHyaaaLRWVNRLHLRGRLVYERVRTGLPDPERPRL-DPDSLAGKldfkphPFRAWLEAELGRRFDYVCV 564
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 684 ADaaaslEQQLE----------QVKL--TLFQRD----------------QQLAALQQEhldvikqLTSTQEALQAKGQS 735
Cdd:COG4913 565 DS-----PEELRrhpraitragQVKGngTRHEKDdrrrirsryvlgfdnrAKLAALEAE-------LAELEEELAEAEER 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 736 LDDLHTRYDELQARLEELQREADSREDAIHFLQNEKIVLEV-----ALQSAKSDKEELDRGARRLEEDTEETSGLLEQLR 810
Cdd:COG4913 633 LEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELeaeleRLDASSDDLAALEEQLEELEAELEELEEELDELK 712
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 811 QDLAVKSNQVEHLQQETATLRKQMQ-KVKEQFVQQKVMVEAYRRDATSK---DQLINELKATKKRLDSEMKELRQELIKL 886
Cdd:COG4913 713 GEIGRLEKELEQAEEELDELQDRLEaAEDLARLELRALLEERFAAALGDaveRELRENLEERIDALRARLNRAEEELERA 792
|
...
gi 568935679 887 QGE 889
Cdd:COG4913 793 MRA 795
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
345-1026 |
5.52e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 54.59 E-value: 5.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 345 EISAEALGQFPSIKDVLQAAAAQHQDQNQEANGEVRSRRDSICSSVSMESSLAEPQDELLQIL-KDKRRLEGQVEALSLE 423
Cdd:TIGR00618 180 QLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHaYLTQKREAQEEQLKKQ 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 424 --ASQALQEKAELQAQLAALStRLQAQVEHshssQQKQDSLSSEVDTLKQSCWDLERAMTDLQSMLEAKNASLASSNNDL 501
Cdd:TIGR00618 260 qlLKQLRARIEELRAQEAVLE-ETQERINR----ARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHV 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 502 -QVAEEQYQRLMAKVEDMQRNILSKDNTVHDLRQ----QMTALQSQLQQVQLERTTLTSKLQASQAEITSLQHARqwyQQ 576
Cdd:TIGR00618 335 kQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIReiscQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQ---AT 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 577 QLTLAQEARVrLQGEMAHIQVGQMTQAGLLEHLKL--ENVSLSHQLTETQHRSIKEKERIAVQLQSIEADMLDQEAAFVQ 654
Cdd:TIGR00618 412 IDTRTSAFRD-LQGQLAHAKKQQELQQRYAELCAAaiTCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKA 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 655 IREAKTMVEEDLQRRLEEFEGEREQLQKVADAAASLEQQLEQVKLTLFQRDQQLAALQQEHLDVIKQLTSTQEALQAKGQ 734
Cdd:TIGR00618 491 VVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQ 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 735 SLDDLHTRYDELQARLEELQREADSREDAIHFLQNEKIVLEVALQSAKSDKEEldrgarrlEEDTEETSGLLEQLRQDLA 814
Cdd:TIGR00618 571 SFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQP--------EQDLQDVRLHLQQCSQELA 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 815 VKSNQVEHLQQETA--TLRKQMQKVKEQFVQQKVMVEAYRRDATSKDQLINELKATKKRLDSEMKELRQELIKLQGEKKT 892
Cdd:TIGR00618 643 LKLTALHALQLTLTqeRVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNE 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 893 VEVEHSRLQKDMSlvhqqmAELEGHLQSVQKERDEMEIHLQSLKFDKEQMIALTEANETLKKQIEELQQEAKKAITEQKQ 972
Cdd:TIGR00618 723 IENASSSLGSDLA------AREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREE 796
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....
gi 568935679 973 KMKRLGSDLSSAQKEMKTKHKAYENAVSILSRRLQEALASKEATDAELNQLRAQ 1026
Cdd:TIGR00618 797 DTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQ 850
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
736-894 |
8.59e-07 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 51.85 E-value: 8.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 736 LDDLHTRYDELQARLEELQREADSredaihfLQNEKIVLEVALQSAKSDKEELDRGARRLEEDTEETSGLLEQLRQDL-A 814
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAE-------LEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLgN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 815 VKSN-QVEHLQQETATLRKQMQKVKEQFVQQKVMVEAYRRDATSKDQLINELKAT----KKRLDSEMKELRQELIKLQGE 889
Cdd:COG1579 85 VRNNkEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAEleekKAELDEELAELEAELEELEAE 164
|
....*
gi 568935679 890 KKTVE 894
Cdd:COG1579 165 REELA 169
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
854-1308 |
1.33e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 53.38 E-value: 1.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 854 DATSKDQLINELKATKKR--LDSEMKELRQELIKLQGEKKTVEvehsRLQKDMSLVHQQMAELEGHLQSVQKErdemeih 931
Cdd:PRK11281 34 DLPTEADVQAQLDALNKQklLEAEDKLVQQDLEQTLALLDKID----RQKEETEQLKQQLAQAPAKLRQAQAE------- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 932 LQSLKFDkeqmiALTEANETLKKQ-IEELQQEakkaITEQKQKMKRLGSDLSSAQKEMKTKHKAYENAVSILSRRLQEal 1010
Cdd:PRK11281 103 LEALKDD-----NDEETRETLSTLsLRQLESR----LAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQR-- 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1011 askeatdaeLNQLRAQSTGG--SSDPVLHEKIRALEVELQNVGQSKILLEKELQ---EVITMTSQELEESREKVLELEDE 1085
Cdd:PRK11281 172 ---------LQQIRNLLKGGkvGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEgntQLQDLLQKQRDYLTARIQRLEHQ 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1086 LQESRGFRRKiKRLEESNKKLAlelEHERGKLTGLGQSNAALR---EHNSILETALAK---READLVQLNLQVQAVLQRK 1159
Cdd:PRK11281 243 LQLLQEAINS-KRLTLSEKTVQ---EAQSQDEAARIQANPLVAqelEINLQLSQRLLKateKLNTLTQQNLRVKNWLDRL 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1160 EEEDRQMKQLVQALQVSL--------EKEKM----EVNSLKEQMAAARIEaghnrrhfkaaTLELSEVKKELQAKEHLVQ 1227
Cdd:PRK11281 319 TQSERNIKEQISVLKGSLllsrilyqQQQALpsadLIEGLADRIADLRLE-----------QFEINQQRDALFQPDAYID 387
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1228 TLQAevdelqiqdgKHSQEiaqFQTELAEARTQLQLLQKKLDEQMSQQpTGSQEMEDLKWELDQKerEIQSLKQQLD--L 1305
Cdd:PRK11281 388 KLEA----------GHKSE---VTDEVRDALLQLLDERRELLDQLNKQ-LNNQLNLAINLQLNQQ--QLLSVSDSLQstL 451
|
...
gi 568935679 1306 TEQ 1308
Cdd:PRK11281 452 TQQ 454
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
531-769 |
1.83e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.07 E-value: 1.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 531 DLRQQMTALQSQLQQVQLERTTLTSKLQASQAEITSLQHARQWYQQQLTLAQEARVRLQGEMAHIQvgqmtqagllEHLK 610
Cdd:COG4942 31 QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR----------AELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 611 LENVSLSHQLTETQHRSIKEKERIAVQLQSIeADMLDQEAAFVQIREAktmveedLQRRLEEFEGEREQLQKVADAAASL 690
Cdd:COG4942 101 AQKEELAELLRALYRLGRQPPLALLLSPEDF-LDAVRRLQYLKYLAPA-------RREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568935679 691 EQQLEQVKLTLFQRDQQLAALQQEHLDVIKQLTSTQEALQAKGQSLDDLHTRYDELQARLEELQREADSREDAIHFLQN 769
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAAL 251
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
860-1006 |
2.73e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 50.31 E-value: 2.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 860 QLINELKATKKRLDSEMKELRQELIKLQGEKKTVEVEHSRLQKDMSLVHQQMAELEGHLQSVQKERD----EMEIHLQSL 935
Cdd:COG1579 24 HRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEyealQKEIESLKR 103
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568935679 936 KFDK--EQMIALTEANETLKKQIEELQQEAKKAITEQKQKMKRLGSDLSSAQKEMKTKHKAYENAVSILSRRL 1006
Cdd:COG1579 104 RISDleDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIPPEL 176
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
626-887 |
3.35e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 51.88 E-value: 3.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 626 RSIKEKERiavQLQSIEADMLDQEAAFVQIREAKTMV-----------EEDLQRRLEEFEGEREQLQKVADAAASLEQQL 694
Cdd:COG3096 843 QRRSELER---ELAQHRAQEQQLRQQLDQLKEQLQLLnkllpqanllaDETLADRLEELREELDAAQEAQAFIQQHGKAL 919
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 695 EQV--KLTLFQRD-QQLAALQQEHLdvikQLTSTQEALQAKGQSLDDLHTRydelqarleelqREADSREDAIHFLQ--- 768
Cdd:COG3096 920 AQLepLVAVLQSDpEQFEQLQADYL----QAKEQQRRLKQQIFALSEVVQR------------RPHFSYEDAVGLLGens 983
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 769 --NEKivLEVALQSAKSDKEELDRGARRLEEDTEETSGLLEQLRQDLAVKSNQVEHLQQEtatlrkqMQKVKEQFVQQKV 846
Cdd:COG3096 984 dlNEK--LRARLEQAEEARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQE-------LEELGVQADAEAE 1054
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 568935679 847 MVEAYRRD-----ATSKDQLINELKATKKRLDSEMKELRQELIKLQ 887
Cdd:COG3096 1055 ERARIRRDelheeLSQNRSRRSQLEKQLTRCEAEMDSLQKRLRKAE 1100
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
688-1128 |
3.89e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.31 E-value: 3.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 688 ASLEQQLEQVKLTLFQRDQQLAALQQEHLDV----IKQLTSTQEALQAKGQSLDDLHTRYDELQARLEELQREADSREDA 763
Cdd:COG4717 45 AMLLERLEKEADELFKPQGRKPELNLKELKEleeeLKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 764 IHFLQnekivlevALQSAKSDKEELDRGARRLEEdTEETSGLLEQLRQDLAVKSNQVEHLQQETATLRKQMQKVKEQFVQ 843
Cdd:COG4717 125 LQLLP--------LYQELEALEAELAELPERLEE-LEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQ 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 844 QkvMVEAYRRDATSKDQLINELKATKKRLDSEMKELRQELIKLQGEKKTVEVEHSRLqkdMSLVHQQMAELEGHLQSVQK 923
Cdd:COG4717 196 D--LAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARL---LLLIAAALLALLGLGGSLLS 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 924 ERDEME---------IHLQSLKFDKEQMIALTEANET-LKKQIEELQQEAKKAITEQKQKMKRLGSDLSSAQKEMKTKHK 993
Cdd:COG4717 271 LILTIAgvlflvlglLALLFLLLAREKASLGKEAEELqALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQ 350
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 994 AYENAVSILSRRLQEALASKE-------ATDAELNQLRAQSTGGSSDPVLHEKIRALEVELQNVG-----QSKILLEKEL 1061
Cdd:COG4717 351 ELLREAEELEEELQLEELEQEiaallaeAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLgeleeLLEALDEEEL 430
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568935679 1062 QEVITMTSQELEESREKVLELEDELQEsrgFRRKIKRLEESNK--KLALELEHERGKLTGLGQSNAALR 1128
Cdd:COG4717 431 EEELEELEEELEELEEELEELREELAE---LEAELEQLEEDGElaELLQELEELKAELRELAEEWAALK 496
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
567-983 |
5.94e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 51.11 E-value: 5.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 567 LQHARQWY--QQQLTLAQEARVRLQGEMAHIQVGQMTQAGLLE----HLKLENVSLSHQltetqhrsikEK-ERIAVQLQ 639
Cdd:COG3096 288 LELRRELFgaRRQLAEEQYRLVEMARELEELSARESDLEQDYQaasdHLNLVQTALRQQ----------EKiERYQEDLE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 640 SIEADMLDQEAAFVQIREAKTMVEEDLQRRLEEFEGEREQLqkvadaaASLEQQLEQvkltlfqrdQQLAALQQEHldVI 719
Cdd:COG3096 358 ELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQL-------ADYQQALDV---------QQTRAIQYQQ--AV 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 720 KQLTSTQEALQAKGQSLDDLHTRYDELQARLEEL--------QREADSREDAIHFLQN----EKIVLEVALQSAKSDKEE 787
Cdd:COG3096 420 QALEKARALCGLPDLTPENAEDYLAAFRAKEQQAteevleleQKLSVADAARRQFEKAyelvCKIAGEVERSQAWQTARE 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 788 LDRGARRLEEdteeTSGLLEQLRQDLAvKSNQVEHLQQETATLRKQMQKVKEQFVQQKVMVEAYRRDAtskDQLINELKA 867
Cdd:COG3096 500 LLRRYRSQQA----LAQRLQQLRAQLA-ELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAEL---EAQLEELEE 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 868 TKKRLDSEMKELRQELIKLQGEKKTVEVE-------HSRLQKDMSLVHQQMAelegHLQSVQKERDEMEIHLQSLKFDKE 940
Cdd:COG3096 572 QAAEAVEQRSELRQQLEQLRARIKELAARapawlaaQDALERLREQSGEALA----DSQEVTAAMQQLLEREREATVERD 647
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 568935679 941 QmiaLTEANETLKKQIEELQQEAKKAITEQKQKMKRLGSDLSS 983
Cdd:COG3096 648 E---LAARKQALESQIERLSQPGGAEDPRLLALAERLGGVLLS 687
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
393-844 |
6.37e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 6.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 393 ESSLAEPQDELLQILKDKRRLEGQVEALSLEASQALQEKAELQAQLAALSTRLQAQVEHSHS-----------SQQKQDS 461
Cdd:COG4913 344 EREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEalaeaeaalrdLRRELRE 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 462 LSSEVDTLKQSCWDLERAMTDLQSMLEAK----------------------------NASLASSNNDLQVAEEQYQRLMA 513
Cdd:COG4913 424 LEAEIASLERRKSNIPARLLALRDALAEAlgldeaelpfvgelievrpeeerwrgaiERVLGGFALTLLVPPEHYAAALR 503
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 514 KVEDmqrnilskdntvHDLRQQMTALQSQLQQVQLERT-----TLTSKLQASQAEitslqhARQWYQQQLTLAQE-ARVR 587
Cdd:COG4913 504 WVNR------------LHLRGRLVYERVRTGLPDPERPrldpdSLAGKLDFKPHP------FRAWLEAELGRRFDyVCVD 565
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 588 LQGEMAHIQVGqMTQAGLLEHLKlenvslshqltetQHRSIKEKERIAVQLQsIEADMLDQEAAFVQIREAKTMVEEDLQ 667
Cdd:COG4913 566 SPEELRRHPRA-ITRAGQVKGNG-------------TRHEKDDRRRIRSRYV-LGFDNRAKLAALEAELAELEEELAEAE 630
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 668 RRLEEFEGEREQLQKVADAAASLEQQLEQVKLTLfQRDQQLAALQQEhldvIKQLTSTQEALQAKGQSLDDLHTRYDELQ 747
Cdd:COG4913 631 ERLEALEAELDALQERREALQRLAEYSWDEIDVA-SAEREIAELEAE----LERLDASSDDLAALEEQLEELEAELEELE 705
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 748 ARLEELQREADSREDAIHFLQNEKIVLEVALQSAKSDKEELDR---GARRLEEDTEEtsgLLEQLRQDLavkSNQVEHLQ 824
Cdd:COG4913 706 EELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRallEERFAAALGDA---VERELRENL---EERIDALR 779
|
490 500
....*....|....*....|
gi 568935679 825 QETATLRKQMQKVKEQFVQQ 844
Cdd:COG4913 780 ARLNRAEEELERAMRAFNRE 799
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
781-1014 |
6.51e-06 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 51.21 E-value: 6.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 781 AKSDKEELDRGARRLEEDTEetsgLLEQLRQDLAVKSNQVEHLQqetatlrkqmqkVKEQFVQQKvmveayrrdaTSKDQ 860
Cdd:TIGR01612 1495 SKGCKDEADKNAKAIEKNKE----LFEQYKKDVTELLNKYSALA------------IKNKFAKTK----------KDSEI 1548
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 861 LINELKATKKRLDSEMKELRQELIKLQGEKKTVEVE---HSRLQKDMSLVHQQMAELEGHLQSVQ----------KERDE 927
Cdd:TIGR01612 1549 IIKEIKDAHKKFILEAEKSEQKIKEIKKEKFRIEDDaakNDKSNKAAIDIQLSLENFENKFLKISdikkkindclKETES 1628
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 928 MEIHLQSLKFDKE--QMIALTEANETLKKQIEELQQEaKKAITEQKQKMKRLGSDLSSAQKEMKTKHKAYEnaVSILSRR 1005
Cdd:TIGR01612 1629 IEKKISSFSIDSQdtELKENGDNLNSLQEFLESLKDQ-KKNIEDKKKELDELDSEIEKIEIDVDQHKKNYE--IGIIEKI 1705
|
....*....
gi 568935679 1006 LQEALASKE 1014
Cdd:TIGR01612 1706 KEIAIANKE 1714
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
658-876 |
7.20e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.79 E-value: 7.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 658 AKTMVEEDLQRRLEEFEGEREQLQKvadAAASLEQQLEQV--KLTLFQRDQQLAALQQEHLDVIKQLTSTQEALQAKGQS 735
Cdd:COG3206 158 AEAYLEQNLELRREEARKALEFLEE---QLPELRKELEEAeaALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAE 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 736 LDDLHTRYDELQARLEELQREAD--SREDAIHFLQNEKIVLEVALQSAKSD-----------KEELDRGARRLEedtEET 802
Cdd:COG3206 235 LAEAEARLAALRAQLGSGPDALPelLQSPVIQQLRAQLAELEAELAELSARytpnhpdvialRAQIAALRAQLQ---QEA 311
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568935679 803 SGLLEQLRQDLAVKSNQVEHLQQETATLRKQMQKVKEQFVQQKVMveayRRDATSKDQLINELKATKKRLDSEM 876
Cdd:COG3206 312 QRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRL----EREVEVARELYESLLQRLEEARLAE 381
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
734-1114 |
8.57e-06 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 50.07 E-value: 8.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 734 QSLDDLHTRYDELQARLEELQREADSredaihfLQNEKIVLEVALQSAKSDKEELDRGARRLEEDTEETSGLLEQLRQDL 813
Cdd:pfam19220 41 RELPQAKSRLLELEALLAQERAAYGK-------LRRELAGLTRRLSAAEGELEELVARLAKLEAALREAEAAKEELRIEL 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 814 AVKSNQVEHLQQETATLRKQMQKVKEQfvqqkvmVEAYRRDATSKDQLInelkatkKRLDSEMKELRQELIKLQGEKKtv 893
Cdd:pfam19220 114 RDKTAQAEALERQLAAETEQNRALEEE-------NKALREEAQAAEKAL-------QRAEGELATARERLALLEQENR-- 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 894 evehsRLQKDMSLVHQQMAELEGHLQSVQKERDEmeiHLQSLKFDKEQMIALTEANETLKKQIEELQQEAKKAITEQKQK 973
Cdd:pfam19220 178 -----RLQALSEEQAAELAELTRRLAELETQLDA---TRARLRALEGQLAAEQAERERAEAQLEEAVEAHRAERASLRMK 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 974 MKRLGSDLSSAQK---EMKTKHKAYENAVSILSRRLQEALASKEATDAELNQLRAQSTggssdpvlhekirALEVELQNV 1050
Cdd:pfam19220 250 LEALTARAAATEQllaEARNQLRDRDEAIRAAERRLKEASIERDTLERRLAGLEADLE-------------RRTQQFQEM 316
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568935679 1051 GQSKILLEKE---LQEVITMTSQELEESREKVLELEDELQE-SRGFRRKIKRLEESNKKLALELEHER 1114
Cdd:pfam19220 317 QRARAELEERaemLTKALAAKDAALERAEERIASLSDRIAElTKRFEVERAALEQANRRLKEELQRER 384
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
387-603 |
9.69e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 9.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 387 CSSVSMESSLAEPQDELLQILKDKRRLEGQVEALSLEASQALQEKAELQAQLAALSTRLQAQVEHSHSSQQKQDSLSSEV 466
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 467 DTLKQscwDLERAMTDLQSMLEA--------------KNASLASSNNDLQVAEEQYQRLMAKVEDMQRNILSKDNTVHDL 532
Cdd:COG4942 93 AELRA---ELEAQKEELAELLRAlyrlgrqpplalllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568935679 533 RQQMTALQSQLQQVQLERTTLTSKLQASQAEITSLQHARQWYQQQLTLAQEARVRLQGEMAHIQVGQMTQA 603
Cdd:COG4942 170 EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
723-1338 |
9.76e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 50.56 E-value: 9.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 723 TSTQEALQAKGQSLDDLHTRYDELQARLEELQREAdsredaiHFLQNEKIVLEVALQSAKSDKEELDRGARRLEEDTEET 802
Cdd:pfam01576 1 TRQEEEMQAKEEELQKVKERQQKAESELKELEKKH-------QQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQEL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 803 SGLLEQLRQDLAVKSNQVEHLQQETATLRKQMQKVKEQFVQQkvmvEAYRRdatskdqlinELKATKKRLDSEMKELRQE 882
Cdd:pfam01576 74 EEILHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEE----EAARQ----------KLQLEKVTTEAKIKKLEED 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 883 LIKLqgekktvEVEHSRLQKDMSLVHQQMAELEGHLqsvqKERDEMEIHLQSLKFDKEQMIalTEANETLKKQiEELQQE 962
Cdd:pfam01576 140 ILLL-------EDQNSKLSKERKLLEERISEFTSNL----AEEEEKAKSLSKLKNKHEAMI--SDLEERLKKE-EKGRQE 205
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 963 AKKAiteqKQKMKRLGSDLSSAQKEMKTKHKAYENAVSILSRRLQEALASKEATDAELNQLRaqstggssdpvlhEKIRA 1042
Cdd:pfam01576 206 LEKA----KRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNAL-------------KKIRE 268
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1043 LEVELQnvgqskillekELQEVITMTSQELEESREKVLELEDELQESRGfrrkikRLEESNKKLALELEHERGKLTGLGQ 1122
Cdd:pfam01576 269 LEAQIS-----------ELQEDLESERAARNKAEKQRRDLGEELEALKT------ELEDTLDTTAAQQELRSKREQEVTE 331
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1123 SNAALREHNSILETALakreADLVQLNLQVQAVLQRKEEEDRQMKQLVQALQVSLEKEKMEVNSLKEQMAAARIEAGHNR 1202
Cdd:pfam01576 332 LKKALEEETRSHEAQL----QEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKR 407
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1203 RHFKAATLEL----SEVKKELQAKEHLVQTLQAEVDELQIQDGKHSQEIAQFQTELAEARTQLQLLQKKLDEQMSQQPTg 1278
Cdd:pfam01576 408 KKLEGQLQELqarlSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLN- 486
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1279 sqemedLKWELDQKEREIQSLKQQLDlTEQQGKKELEGTQQTLQTIKSELEMVQEDLSET 1338
Cdd:pfam01576 487 ------LSTRLRQLEDERNSLQEQLE-EEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGT 539
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
791-1357 |
1.07e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.04 E-value: 1.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 791 GARRLEEDTEetsGLLEQLRQDLAVKSNQVEH-----LQQETATLRKQMQKVKEQfvqqkvmveaYRRDATSKDQLINEL 865
Cdd:PRK02224 177 GVERVLSDQR---GSLDQLKAQIEEKEEKDLHerlngLESELAELDEEIERYEEQ----------REQARETRDEADEVL 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 866 KATKKRLDsEMKELRQELIKLQGEKKTVEVEHSRLQKDMSLVHQQMAELEghlqsvqKERDEMeihLQSLKFDKEQMIAL 945
Cdd:PRK02224 244 EEHEERRE-ELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELE-------EERDDL---LAEAGLDDADAEAV 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 946 TEANETLKKQIEELQQEakkaITEQKQKMKRLGSDLSSAQKEMKTkhkayenavsiLSRRLQEALASKEATDAELNQLRA 1025
Cdd:PRK02224 313 EARREELEDRDEELRDR----LEECRVAAQAHNEEAESLREDADD-----------LEERAEELREEAAELESELEEARE 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1026 QSTGGSSD-PVLHEKIRALEVELQNVGQSKILLEKELQEVitmtSQELEESREKVLELEDELQESRGFRRKIKRLEESnk 1104
Cdd:PRK02224 378 AVEDRREEiEELEEEIEELRERFGDAPVDLGNAEDFLEEL----REERDELREREAELEATLRTARERVEEAEALLEA-- 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1105 klaleleherGKLTGLGQSnaalREHNSILETALAKREadlvqlnlqvqavlqRKEEEDRQMKQLvQALQVSLEKEKMEV 1184
Cdd:PRK02224 452 ----------GKCPECGQP----VEGSPHVETIEEDRE---------------RVEELEAELEDL-EEEVEEVEERLERA 501
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1185 NSLKEqmAAARIEAGHNRRhfKAATLELSEVKKELQAKEHLVQTLQAEVDELQIQDGKHSQEIAQFQTELAEARTQLQLL 1264
Cdd:PRK02224 502 EDLVE--AEDRIERLEERR--EDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAEL 577
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1265 QKKLDEqMSQQPTGSQEMEDLKWELDQKEREIQSLKQQL-DLTEQQG------------KKELEGT---------QQTLQ 1322
Cdd:PRK02224 578 NSKLAE-LKERIESLERIRTLLAAIADAEDEIERLREKReALAELNDerrerlaekrerKRELEAEfdearieeaREDKE 656
|
570 580 590
....*....|....*....|....*....|....*
gi 568935679 1323 TIKSELEMVQEDLSETQKDKFMLQAKVSELKNNMK 1357
Cdd:PRK02224 657 RAEEYLEQVEEKLDELREERDDLQAEIGAVENELE 691
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
813-1026 |
1.10e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 1.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 813 LAVKSNQVEHLQQETATLRKQMQKVKEQFVQQKVMVEAYRRDATSKDQLINELKATKKRLDSEMKELRQELIKLQGEKKT 892
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 893 VEVEHSRLQKDMS--LVHQQMAELEGHL------QSVQKERDEMEIHLQSLKFDKEQMIALTEANETLKKQIEELQQEAK 964
Cdd:COG4942 95 LRAELEAQKEELAelLRALYRLGRQPPLalllspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568935679 965 K---AITEQKQKMKRlgsdLSSAQKEMKTKHKAYENAVSILSRRLQEALASKEATDAELNQLRAQ 1026
Cdd:COG4942 175 EleaLLAELEEERAA----LEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
374-1043 |
1.33e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.84 E-value: 1.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 374 EANGEVRSRRDSICSSV--------SMESSLAEPQDELLQILKDKRR-LEGQVEALSLEASQALQekaeLQAQLAALSTR 444
Cdd:pfam12128 287 ELNQLLRTLDDQWKEKRdelngelsAADAAVAKDRSELEALEDQHGAfLDADIETAAADQEQLPS----WQSELENLEER 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 445 LQAQVEHSHSSQQKQDSLSSEVDtlKQSCWDLERAMTDLQSMLEAKNASLASSNNDLQVAE----EQYQRLMAKVEDMQR 520
Cdd:pfam12128 363 LKALTGKHQDVTAKYNRRRSKIK--EQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALEselrEQLEAGKLEFNEEEY 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 521 NILSKDNTVH----------DLRQQMTALQSQLQQVQLERTTLTSKLQASQAEITSLQHARQWYQQQLTLAQEARVRLQG 590
Cdd:pfam12128 441 RLKSRLGELKlrlnqatatpELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQS 520
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 591 EMAHIQVGQMTQAG-LLEHLKLENVSLSHQL-----TETQHRSIKEKERIAVQ-------------LQSIEA-DMLDQEA 650
Cdd:pfam12128 521 ALDELELQLFPQAGtLLHFLRKEAPDWEQSIgkvisPELLHRTDLDPEVWDGSvggelnlygvkldLKRIDVpEWAASEE 600
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 651 afvQIREAKTMVEEDLQRRLEEFEGEREQLQKVADAAASLEQQLEQVKLTLFQRDQQLAAL----QQEHLDVIKQLTSTQ 726
Cdd:pfam12128 601 ---ELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLfdekQSEKDKKNKALAERK 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 727 EALQAKGQSLD-DLHTRYDELQARLEELQReaDSREDAIHFLQNEKIV---LEVALQSAKSDKEELDRGARRleedteET 802
Cdd:pfam12128 678 DSANERLNSLEaQLKQLDKKHQAWLEEQKE--QKREARTEKQAYWQVVegaLDAQLALLKAAIAARRSGAKA------EL 749
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 803 SGLLEQLRQDLA---VKSNQVEHLQQETATLRKQMQKVkeqfvqqkvmvEAYRRDATSKDQLINE--------LKATKKR 871
Cdd:pfam12128 750 KALETWYKRDLAslgVDPDVIAKLKREIRTLERKIERI-----------AVRRQEVLRYFDWYQEtwlqrrprLATQLSN 818
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 872 LDSEMKELRQELIKLQGEKKTvevehsRLQKDMSLVHQQMAELEGHLQSVQKERDEMEiHLQSLKFDKEQMIALTEANET 951
Cdd:pfam12128 819 IERAISELQQQLARLIADTKL------RRAKLEMERKASEKQQVRLSENLRGLRCEMS-KLATLKEDANSEQAQGSIGER 891
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 952 LkKQIEELQQEAKKAITEQKQKMKRLgsdlssaqKEMKTKHKAYENAVSILSRRLQEALASKEATDAELNQLRAQSTGGS 1031
Cdd:pfam12128 892 L-AQLEDLKLKRDYLSESVKKYVEHF--------KNVIADHSGSGLAETWESLREEDHYQNDKGIRLLDYRKLVPYLEQW 962
|
730
....*....|..
gi 568935679 1032 SDPVLHEKIRAL 1043
Cdd:pfam12128 963 FDVRVPQSIMVL 974
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
746-1356 |
1.56e-05 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 49.82 E-value: 1.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 746 LQARLEELQREADSredaihfLQNEKIVLEVALQSAK-------SDKEELDRGARRleEDTEETSGLLEQLRQDlavksn 818
Cdd:pfam10174 1 LQAQLRDLQRENEL-------LRRELDIKESKLGSSMnsiktfwSPELKKERALRK--EEAARISVLKEQYRVT------ 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 819 qvehlQQETATLRKQMQKVKEQFVQQKVMVEAYRRDATSKDQLINELKATKKRLDSEMKELRQEliklqgekktveveHS 898
Cdd:pfam10174 66 -----QEENQHLQLTIQALQDELRAQRDLNQLLQQDFTTSPVDGEDKFSTPELTEENFRRLQSE--------------HE 126
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 899 RLQKDMSLVHQQMAELEGHLQSvqkerdemeihlqslkfdkeQMIALTEANETLKKQIEELQqeakkaiteqkqkMKRLG 978
Cdd:pfam10174 127 RQAKELFLLRKTLEEMELRIET--------------------QKQTLGARDESIKKLLEMLQ-------------SKGLP 173
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 979 SDLSSAQKEMKTKHKAYENAVSILSRRLQEALASKEATDAELNQLRAQSTGGSSDPVLHEKIRALEVELQNVGQSKILLE 1058
Cdd:pfam10174 174 KKSGEEDWERTRRIAEAEMQLGHLEVLLDQKEKENIHLREELHRRNQLQPDPAKTKALQTVIEMKDTKISSLERNIRDLE 253
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1059 KELQEVITMTSQELEESREKVLELEDELQESRGFRRKIKRLEESNKKLALELEHERGKLTGLGQSNAALREHNSILETAL 1138
Cdd:pfam10174 254 DEVQMLKTNGLLHTEDREEEIKQMEVYKSHSKFMKNKIDQLKQELSKKESELLALQTKLETLTNQNSDCKQHIEVLKESL 333
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1139 AKREadlvqlnlQVQAVLQRKeeedrqmkqlVQALQVSLEKEKMEVNSLKEQMAAARIEAGhnrrhfkAATLELSEVKKE 1218
Cdd:pfam10174 334 TAKE--------QRAAILQTE----------VDALRLRLEEKESFLNKKTKQLQDLTEEKS-------TLAGEIRDLKDM 388
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1219 LQAKEHLVQTLQAEVDELQIQdgkhsqeiaqfqteLAEARTQLQLLQKKLDEQMSQQPTGSQEMEDLKWELDQKEREIQS 1298
Cdd:pfam10174 389 LDVKERKINVLQKKIENLQEQ--------------LRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEEALSEKERIIER 454
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 568935679 1299 LKQQLDLTEQQGKKELEGTQQTLQTIKSELEMVQEDLSETQKDKFMLQAKVSELKNNM 1356
Cdd:pfam10174 455 LKEQREREDRERLEELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSG 512
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1187-1354 |
1.70e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 1.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1187 LKEQMAA-ARIEAGHNRrhFKAATLELSEVKK-----ELQAKEHLVQTLQAEVDELQIQDGKHSQEIAQFQTELAEARTQ 1260
Cdd:COG4913 247 AREQIELlEPIRELAER--YAAARERLAELEYlraalRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1261 LQLLQKKLDEQmsqqptGSQEMEDLKWELDQKERE--------------IQSLKQQLDLTEQQGKKELEGTQQTLQTIKS 1326
Cdd:COG4913 325 LDELEAQIRGN------GGDRLEQLEREIERLEREleererrrarlealLAALGLPLPASAEEFAALRAEAAALLEALEE 398
|
170 180
....*....|....*....|....*...
gi 568935679 1327 ELEMVQEDLSETQKDKFMLQAKVSELKN 1354
Cdd:COG4913 399 ELEALEEALAEAEAALRDLRRELRELEA 426
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
944-1195 |
2.32e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 2.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 944 ALTEANETLKKQIEELQQEakkaITEQKQKMKRLGSDLSSAQKEMKtkhkAYENAVSILSRRLQEALASKEATDAELNQL 1023
Cdd:COG4942 17 AQADAAAEAEAELEQLQQE----IAELEKELAALKKEEKALLKQLA----ALERRIAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1024 RAQstggssdpvlhekIRALEVELQNvgqskilLEKELQEVITMTSQELEESREKVLELEDELQESRGFRRKIKRLEESN 1103
Cdd:COG4942 89 EKE-------------IAELRAELEA-------QKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPAR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1104 KKLALELEHERGKLTGLGQSNAALREHNSILETALAKREADLVQLNLQVQAVLQRKEEEDRQMKQLVQALQVSLEKEKME 1183
Cdd:COG4942 149 REQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
250
....*....|..
gi 568935679 1184 VNSLKEQMAAAR 1195
Cdd:COG4942 229 IARLEAEAAAAA 240
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
1038-1303 |
2.51e-05 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 47.99 E-value: 2.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1038 EKIRALEvelqnvgQSKILLE---KELQEVITMTSQELEESREKvlELEDelqesrgFRRKIKRLEESNKKLALELEHER 1114
Cdd:pfam00038 18 DKVRFLE-------QQNKLLEtkiSELRQKKGAEPSRLYSLYEK--EIED-------LRRQLDTLTVERARLQLELDNLR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1115 gkltglgqsnAALREHNSILETALAKR---EADLVQLNLQVQAVLQRKEEEDRQMKQLVQALQVSLEKEKMEVNSLKEQM 1191
Cdd:pfam00038 82 ----------LAAEDFRQKYEDELNLRtsaENDLVGLRKDLDEATLARVDLEAKIESLKEELAFLKKNHEEEVRELQAQV 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1192 AAARIEAGHNrrhfKAATLELSEVKKELQA---------KEHLVQTLQAEVDELQIQDGKHSQEIAQFQTELAEARTQLQ 1262
Cdd:pfam00038 152 SDTQVNVEMD----AARKLDLTSALAEIRAqyeeiaaknREEAEEWYQSKLEELQQAAARNGDALRSAKEEITELRRTIQ 227
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 568935679 1263 LLQKKLDEQMSQ-----------QPTGSQEMEDLKWELDQKEREIQSLKQQL 1303
Cdd:pfam00038 228 SLEIELQSLKKQkaslerqlaetEERYELQLADYQELISELEAELQETRQEM 279
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
607-1114 |
2.69e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.98 E-value: 2.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 607 EHLKLENVSLSHqLTETQHRSIKEKERIAVQLQSIE----ADMLDQEAAFVQIREAKTMVEEdlQRRLEEFEGEREQLQK 682
Cdd:PTZ00121 1253 EIRKFEEARMAH-FARRQAAIKAEEARKADELKKAEekkkADEAKKAEEKKKADEAKKKAEE--AKKADEAKKKAEEAKK 1329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 683 VADAA---ASLEQQLEQVKLTLFQRDQQLAALQQEHLDVIKQLTSTQ----EALQAKGQSL---DDLHTRYDELQARLEE 752
Cdd:PTZ00121 1330 KADAAkkkAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAkkkaDAAKKKAEEKkkaDEAKKKAEEDKKKADE 1409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 753 LQREADSREDAIhflQNEKIVLEVALQSAKSDKEELDRGARRLEEDTEETSGLLEQLRQdlAVKSNQVEHLQQEtATLRK 832
Cdd:PTZ00121 1410 LKKAAAAKKKAD---EAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKK--AEEAKKADEAKKK-AEEAK 1483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 833 QMQKVKEQFVQQKVMVEAYRRDATSKDQLINELKATKKRLDSEMKELRQ-----ELIKLQGEKKTVEV---EHSRLQKDM 904
Cdd:PTZ00121 1484 KADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEakkadEAKKAEEKKKADELkkaEELKKAEEK 1563
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 905 SLVHQQMAELEGH---------LQSVQKERDE--MEIHLQSLKFDKEQMIALTEAN---ETLKKQIEELQQEAKKAITEQ 970
Cdd:PTZ00121 1564 KKAEEAKKAEEDKnmalrkaeeAKKAEEARIEevMKLYEEEKKMKAEEAKKAEEAKikaEELKKAEEEKKKVEQLKKKEA 1643
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 971 KQKMKrlGSDLSSAQKEMKTKHKAYENAVSILSRRLQEALASKEATDAELNQLRAQStggssdpvlHEKIRALEVELQNV 1050
Cdd:PTZ00121 1644 EEKKK--AEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEA---------EEAKKAEELKKKEA 1712
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568935679 1051 GQSKILLE-KELQEVITMTSQELEESREKVLELEDELQESRGFRRKIKRLEESNKKLALELEHER 1114
Cdd:PTZ00121 1713 EEKKKAEElKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEK 1777
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
782-1340 |
3.03e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 48.89 E-value: 3.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 782 KSDKEELDRGARRLEEDTEETSGLLEQLRQ---------DLAVKSNQVEHLQQETATLRKQMQKVKEQFVQQKVM---VE 849
Cdd:TIGR01612 1121 KNLDQKIDHHIKALEEIKKKSENYIDEIKAqindledvaDKAISNDDPEEIEKKIENIVTKIDKKKNIYDEIKKLlneIA 1200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 850 AYRRDATSKDQLINELKATKKRLDSEMKElrqeliKLQGEKKTVEVEHSRLQ---KDMSLVHQQMAELEGHLQSVQKERD 926
Cdd:TIGR01612 1201 EIEKDKTSLEEVKGINLSYGKNLGKLFLE------KIDEEKKKSEHMIKAMEayiEDLDEIKEKSPEIENEMGIEMDIKA 1274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 927 EMEI-----------HLQSLKFDK------EQMIALTEANETlKKQIEELQQEAKKAITEQKQKMKRLGSDLSSAQ---- 985
Cdd:TIGR01612 1275 EMETfnishdddkdhHIISKKHDEnisdirEKSLKIIEDFSE-ESDINDIKKELQKNLLDAQKHNSDINLYLNEIAniyn 1353
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 986 -------KEMKTKHKAYENAVSILSRRLQEALASKEA------TDAELNQLRAQSTGGSSDPVLHEKIralevelQNVGQ 1052
Cdd:TIGR01612 1354 ilklnkiKKIIDEVKEYTKEIEENNKNIKDELDKSEKlikkikDDINLEECKSKIESTLDDKDIDECI-------KKIKE 1426
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1053 SKILLEKELQEVITMTsQELEESREKVLELEDELQESRGFRRKIKRLEESNKKLAL-----ELEHERGKLTGL---GQSN 1124
Cdd:TIGR01612 1427 LKNHILSEESNIDTYF-KNADENNENVLLLFKNIEMADNKSQHILKIKKDNATNDHdfninELKEHIDKSKGCkdeADKN 1505
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1125 AALREHNSILETALAKREADLVQLNLQVQ---AVLQRKEEEDRQMKQLVQAL-QVSLEKEKME--VNSLKEQMAAARIEA 1198
Cdd:TIGR01612 1506 AKAIEKNKELFEQYKKDVTELLNKYSALAiknKFAKTKKDSEIIIKEIKDAHkKFILEAEKSEqkIKEIKKEKFRIEDDA 1585
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1199 GHNRRHFKAAT-------------LELSEVKKELQAKEHLVQTLQAEVDELQIQdgkhSQEiaqfqTELAEARTQLQLLQ 1265
Cdd:TIGR01612 1586 AKNDKSNKAAIdiqlslenfenkfLKISDIKKKINDCLKETESIEKKISSFSID----SQD-----TELKENGDNLNSLQ 1656
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1266 KKLDEQMSQQptgsQEMEDLKWELDQKEREIQSLKQQLDlteqQGKKE-----LEGTQQTLQTIKSELEMVQEDLSETQK 1340
Cdd:TIGR01612 1657 EFLESLKDQK----KNIEDKKKELDELDSEIEKIEIDVD----QHKKNyeigiIEKIKEIAIANKEEIESIKELIEPTIE 1728
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
562-798 |
3.74e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 48.41 E-value: 3.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 562 AEITSLQHARQWYQQQLTLAQEARVRLQGEMAHIQVGQ------MTQAGLL--EHLKLENVSLSHQLTETQH-------- 625
Cdd:COG3096 836 AELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLqllnklLPQANLLadETLADRLEELREELDAAQEaqafiqqh 915
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 626 -RSIKEKERIAVQLQS----IEADMLDQEAAFVQIREAKTMVE--EDLQRRLEEF--EGEREQLQKVADAAASLEQQLEQ 696
Cdd:COG3096 916 gKALAQLEPLVAVLQSdpeqFEQLQADYLQAKEQQRRLKQQIFalSEVVQRRPHFsyEDAVGLLGENSDLNEKLRARLEQ 995
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 697 VKLTLFQRDQQLAALQQEHLDVIKQLTSTQEALQAKGQSLDDLHTRYDELQARL-----EELQREADSREDAIHFLQNEK 771
Cdd:COG3096 996 AEEARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQELEELGVQAdaeaeERARIRRDELHEELSQNRSRR 1075
|
250 260
....*....|....*....|....*..
gi 568935679 772 IVLEVALQSAKSDKEELDRGARRLEED 798
Cdd:COG3096 1076 SQLEKQLTRCEAEMDSLQKRLRKAERD 1102
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1045-1310 |
5.05e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.09 E-value: 5.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1045 VELQNVGQSKILlekelqeVITMTSQELEESREKVLELEDELQESRgFRRKIKRLEESNKKLALELEHERGKLTglgQSN 1124
Cdd:COG3206 127 LTVEPVKGSNVI-------EISYTSPDPELAAAVANALAEAYLEQN-LELRREEARKALEFLEEQLPELRKELE---EAE 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1125 AALREHnsiletalaKREADLVQLNLQVQAVLQRKEEEDRQmkqlVQALQVSLEKEKMEVNSLKEQMAAARIEAGHN--- 1201
Cdd:COG3206 196 AALEEF---------RQKNGLVDLSEEAKLLLQQLSELESQ----LAEARAELAEAEARLAALRAQLGSGPDALPELlqs 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1202 ------RRHFKAATLELSEVKKELQAKEHLVQTLQAEVDELQIQDGKHSQEI-AQFQTELAEARTQLQLLQKKLDE---Q 1271
Cdd:COG3206 263 pviqqlRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRIlASLEAELEALQAREASLQAQLAQleaR 342
|
250 260 270
....*....|....*....|....*....|....*....
gi 568935679 1272 MSQQPTGSQEMEDLKWELDQKEREIQSLKQQLDLTEQQG 1310
Cdd:COG3206 343 LAELPELEAELRRLEREVEVARELYESLLQRLEEARLAE 381
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1035-1270 |
5.15e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 47.70 E-value: 5.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1035 VLHEKIRALEVELQNVgQSKILLEKELQEVI-TMTSQELEESREKVlelEDELQESRGFRRKIKRLEESNKKLALELEHE 1113
Cdd:PHA02562 178 ELNQQIQTLDMKIDHI-QQQIKTYNKNIEEQrKKNGENIARKQNKY---DELVEEAKTIKAEIEELTDELLNLVMDIEDP 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1114 RGKLTGLGQSNAALREhnsilETALAKREADLVQLNLQVQAVLQRKEEEDRQM---KQLVQALQVSLEKEKMEVNSLKEQ 1190
Cdd:PHA02562 254 SAALNKLNTAAAKIKS-----KIEQFQKVIKMYEKGGVCPTCTQQISEGPDRItkiKDKLKELQHSLEKLDTAIDELEEI 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1191 MaaarIEAGHNRRHFKAATLELSEVKKELQAKEHLVQTLQAEVDELQIQDGKHSQEIAQFQTELAEARTQLQLLQKKLDE 1270
Cdd:PHA02562 329 M----DEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYH 404
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
903-1324 |
6.35e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 47.20 E-value: 6.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 903 DMSLVHQQMAELEGHLQSVQKERDEmeihlqslkfdkeqmiaLTEANETLKKQIEELQQEAKKAiteqKQKMKRLGSDLS 982
Cdd:pfam07888 21 DMLLVVPRAELLQNRLEECLQERAE-----------------LLQAQEAANRQREKEKERYKRD----REQWERQRRELE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 983 SAQKEMKTKHKAYENAVSILSRRLQEALASKEATDAELNQLRAQSTGGSsdpvlhEKIRALEVELQNVGQSKILLEKELQ 1062
Cdd:pfam07888 80 SRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAAHE------ARIRELEEDIKTLTQRVLERETELE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1063 EVitmtsqeLEESREKVLELEDELQESRGFRRKIKRLEESNKKLALELEHERGKLTGLGQSNAALREHNSILETALAKRe 1142
Cdd:pfam07888 154 RM-------KERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTA- 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1143 adlvqlnlqvqavlQRKEEEDRQMKQLVQALQVSLEKEKMEVNSLKEQMAAARIEAGHNRRHFKAATLELSEVKKEL--- 1219
Cdd:pfam07888 226 --------------HRKEAENEALLEELRSLQERLNASERKVEGLGEELSSMAAQRDRTQAELHQARLQAAQLTLQLada 291
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1220 ------------QAKEHLVQTLQAEVDELQiqdgKHSQEIAQFQTELAEARTQLQLLQKKLdeqmsqqptgSQEMEDLKW 1287
Cdd:pfam07888 292 slalregrarwaQERETLQQSAEADKDRIE----KLSAELQRLEERLQEERMEREKLEVEL----------GREKDCNRV 357
|
410 420 430
....*....|....*....|....*....|....*..
gi 568935679 1288 ELDQKEREIQSLKQQLDLTEQQGKKELEGTQQTLQTI 1324
Cdd:pfam07888 358 QLSESRRELQELKASLRVAQKEKEQLQAEKQELLEYI 394
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
784-1379 |
6.46e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 47.79 E-value: 6.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 784 DKEELDRGARRLEEDTEETSGLLEQLRQDLAVKSNQVEHLQQETATLRKQMQKVkeQFVQQKVMVEAYRRDATSKDqLIN 863
Cdd:pfam05483 72 NSEGLSRLYSKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQEL--QFENEKVSLKLEEEIQENKD-LIK 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 864 ELKATK---KRLDSEMKELRQELIKLQGEKKTVEVEHSRLQKDMSLVHQQMAELEghlqsVQKERDEMEIHLQsLKFDKE 940
Cdd:pfam05483 149 ENNATRhlcNLLKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELR-----VQAENARLEMHFK-LKEDHE 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 941 QMIALTEANETLKKQIEELQQEAKKAITEQKQKMKrlgsDLSSAQKEMKTKHKAYENAVSILSRRLQEALASKEATDAEL 1020
Cdd:pfam05483 223 KIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMK----DLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKEL 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1021 NQLR-AQSTGGSSDPVLHEKIRALEVELQNVGQSKILLEKELQEVITMTSQELEESREKVLELEDELqesRGFRRKIKRL 1099
Cdd:pfam05483 299 EDIKmSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELL---RTEQQRLEKN 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1100 EESNKKLALELEHERGKLTGLGQSNAALREHNSILETALAKREAdLVQLNLQVQAVLQRKEEEDRQMKQLVQAlqvsleK 1179
Cdd:pfam05483 376 EDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEK-LLDEKKQFEKIAEELKGKEQELIFLLQA------R 448
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1180 EKmEVNSLKEQMAAARIEAGHNRRhfkaatlELSEVKKELQAKEHLVQTLQAEVDELQIQDGKHSQEIAQFQTELAEART 1259
Cdd:pfam05483 449 EK-EIHDLEIQLTAIKTSEEHYLK-------EVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQE 520
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1260 QLqLLQKKLDEQMSQQPTGSQEMEdlkwelDQKEREIQSLKQQLDLTEQQGKKELEGTQQTLQTIKSELEMVQEDLSETQ 1339
Cdd:pfam05483 521 DI-INCKKQEERMLKQIENLEEKE------MNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILE 593
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 568935679 1340 KDKFMLQAKVselKNNMKTLLQQNQQLKLDLRRGAAKKKE 1379
Cdd:pfam05483 594 NKCNNLKKQI---ENKNKNIEELHQENKALKKKGSAENKQ 630
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
388-905 |
7.17e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.42 E-value: 7.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 388 SSVSMESSLAEPQDELLQILKDKrrlEGQVEALSLEASQALQEKAELQAQLAALstrlQAQVEHSHSSQQKQDS-LSSEV 466
Cdd:pfam15921 254 SQNKIELLLQQHQDRIEQLISEH---EVEITGLTEKASSARSQANSIQSQLEII----QEQARNQNSMYMRQLSdLESTV 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 467 DTLKQSCWDLERAMTD----LQSMLEAKNASLASSNNDL-QVAEE------QYQRLMAKVEDMQRNILSKDNTVHDLRQQ 535
Cdd:pfam15921 327 SQLRSELREAKRMYEDkieeLEKQLVLANSELTEARTERdQFSQEsgnlddQLQKLLADLHKREKELSLEKEQNKRLWDR 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 536 MTALQSQLQQVQLERTTLTSKLQASQAEITSLQHARQ-WYQQQLTLAQ---EARVRLQGEMAHIQVGQMTQAGLLEHLKL 611
Cdd:pfam15921 407 DTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQgQMERQMAAIQgknESLEKVSSLTAQLESTKEMLRKVVEELTA 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 612 ENVSL--SHQLTETQHRSIKEKERiAVQLQSIEADMLDQEAAF-VQIREAKTMVEEDLQRRLEEFEGEREQLQKVADAAA 688
Cdd:pfam15921 487 KKMTLesSERTVSDLTASLQEKER-AIEATNAEITKLRSRVDLkLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIE 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 689 SLEQQLEQVKLTLFQRDQQLAALQQEHLDVIKQLTSTQEALQAKGQSLDDLHTRYDELQARLEELQRE-------ADSRE 761
Cdd:pfam15921 566 ILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEkvklvnaGSERL 645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 762 DAIHFLQNEK--IVLEVA-----LQSAKSDKEELDRGARRLEEDTEETSGLL-----------EQLRQDLAVKSNQVEHL 823
Cdd:pfam15921 646 RAVKDIKQERdqLLNEVKtsrneLNSLSEDYEVLKRNFRNKSEEMETTTNKLkmqlksaqselEQTRNTLKSMEGSDGHA 725
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 824 QQETATLRKQMQKVKEQFVQQKVMVEAYRRDATSKDQLINELKATKKRLDSEMKELRQELIKLQGEKKTVEVEHSRLQKD 903
Cdd:pfam15921 726 MKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEK 805
|
..
gi 568935679 904 MS 905
Cdd:pfam15921 806 VA 807
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1170-1379 |
7.17e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 7.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1170 VQALQVSLEKEKMEVNSLKEQMAAARIEAGHNRRHFKAATLELSEVKKELQAKEHLVQTLQAEVDELQiqdgkhsQEIAQ 1249
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALE-------AELAE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1250 FQTELAEARTQLQLLQKKLDEQM-SQQPTGSQEMEDLKW---ELDQKEREIQSLKQQLDLTEQQGkKELEGTQQTLQTIK 1325
Cdd:COG4942 88 LEKEIAELRAELEAQKEELAELLrALYRLGRQPPLALLLspeDFLDAVRRLQYLKYLAPARREQA-EELRADLAELAALR 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 568935679 1326 SELEMVQEDLSETQKDKFMLQAKVSELKNNMKTLLQQNQQLKLDLRRGAAKKKE 1379
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQ 220
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
781-1445 |
7.78e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 47.66 E-value: 7.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 781 AKSDKEELDRGARRLEEDTEETSGLLEQLRQDLAVKSNQVEHLQQETATLRKQMQKVKEQFVQQKVMVEAyrrdATSKDQ 860
Cdd:TIGR00618 185 EFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEE----QLKKQQ 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 861 LINELKATKKRLDSEMKELR--QELIKLQGEKKTVEVEHSRLQKdmslVHQQMAELEGHLQSVQKERDEMEIHLQSLKFD 938
Cdd:TIGR00618 261 LLKQLRARIEELRAQEAVLEetQERINRARKAAPLAAHIKAVTQ----IEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQ 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 939 KEQMIALTEANETLKKQIEELQQEAKKA--ITEQKQKMKRLGSDLSsAQKEMKTKHKAYENAVSILSRRLQEALASKEAT 1016
Cdd:TIGR00618 337 QSSIEEQRRLLQTLHSQEIHIRDAHEVAtsIREISCQQHTLTQHIH-TLQQQKTTLTQKLQSLCKELDILQREQATIDTR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1017 DAELNQLRAQSTGGSSDPVLHEKIRAL-EVELQNVGQSKILLEKELQEVITMTSQELEESREKVLELEDELQESRGFRRK 1095
Cdd:TIGR00618 416 TSAFRDLQGQLAHAKKQQELQQRYAELcAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLAR 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1096 IKRLEESNKKLALELEHERGKLTGLGQSNA------ALREHNSILETALAKREADLVQLNLQvqavLQRKEEEDRQMKQL 1169
Cdd:TIGR00618 496 LLELQEEPCPLCGSCIHPNPARQDIDNPGPltrrmqRGEQTYAQLETSEEDVYHQLTSERKQ----RASLKEQMQEIQQS 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1170 VQALQVSLEKEKMEVNSLKEQMAAARIEAGHNRRHFKAATLELSEVKKELQAKEHLVQtlqaevdeLQIQDGKHSQEIAQ 1249
Cdd:TIGR00618 572 FSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQD--------VRLHLQQCSQELAL 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1250 FQTELAeaRTQLQLLQKKLDEQMSQqptgSQEMEDLKWELDQ-KEREIQSLKQQLdlteqqgKKELEGTQQTLQTIKSEL 1328
Cdd:TIGR00618 644 KLTALH--ALQLTLTQERVREHALS----IRVLPKELLASRQlALQKMQSEKEQL-------TYWKEMLAQCQTLLRELE 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1329 EMVQEDLSETQKDKFMLQAKVSELKNNMKTLLQQNQQLKLDLRrgaAKKKEPKGESNSSSPATPIKIpdcpvpaslleel 1408
Cdd:TIGR00618 711 THIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQAR---TVLKARTEAHFNNNEEVTAAL------------- 774
|
650 660 670
....*....|....*....|....*....|....*..
gi 568935679 1409 lrpppavskeplkNLNNCLQQLKQEMDSLQRQMEEHT 1445
Cdd:TIGR00618 775 -------------QTGAELSHLAAEIQFFNRLREEDT 798
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
581-803 |
7.82e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 7.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 581 AQEARVRLQGEMAHIQVGQMTQAGLLEHLKLENVSLSHQLTETQhRSIKEKERiavQLQSIEADMLDQEAafvQIREAKT 660
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALE-RRIAALAR---RIRALEQELAALEA---ELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 661 MVEEdLQRRLEEfegEREQLQKVADAAASLEQQlEQVKLTLFQRD--------QQLAALQQEHLDVIKQLTSTQEALQAK 732
Cdd:COG4942 91 EIAE-LRAELEA---QKEELAELLRALYRLGRQ-PPLALLLSPEDfldavrrlQYLKYLAPARREQAEELRADLAELAAL 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568935679 733 GQSL----DDLHTRYDELQARLEELQREADSREDAIHFLQNEKIVLEVALQSAKSDKEELDRGARRLEEDTEETS 803
Cdd:COG4942 166 RAELeaerAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
767-1301 |
8.69e-05 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 47.04 E-value: 8.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 767 LQNEKIVLEValqSAKSDKEELDRGARRLEEDTEETSGLLEQLRQDLAVKSNQvEHLQQETatLRKQMQKVKeqfvQQKV 846
Cdd:pfam05557 14 LQNEKKQMEL---EHKRARIELEKKASALKRQLDRESDRNQELQKRIRLLEKR-EAEAEEA--LREQAELNR----LKKK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 847 MVEAYRRDATSKDQLINELKATKKRLDSEMKELRQELIKLQGEKKTVEVEHSRLQKDMSLVHQQMAELE---GHLQSVQK 923
Cdd:pfam05557 84 YLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEqlrQNLEKQQS 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 924 ERDEMEIHLQSLKFD---KEQMIALTEANETLKKQIEELQQEAKKAITEQKQ--KMKRLGSDLSSAQKEMKTKHKAYENA 998
Cdd:pfam05557 164 SLAEAEQRIKELEFEiqsQEQDSEIVKNSKSELARIPELEKELERLREHNKHlnENIENKLLLKEEVEDLKRKLEREEKY 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 999 vsilsrrlQEALAS----KEATDAELNQLR--AQSTGGS--SDPVLHEKIRALEVELQNVGQSKILLE---KELQEVITM 1067
Cdd:pfam05557 244 --------REEAATleleKEKLEQELQSWVklAQDTGLNlrSPEDLSRRIEQLQQREIVLKEENSSLTssaRQLEKARRE 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1068 TSQELEESREKVLELEDELQESRGFRRKIKR---------------LEESNKKLALElEHERGKLTGLGQSNAALRE--- 1129
Cdd:pfam05557 316 LEQELAQYLKKIEDLNKKLKRHKALVRRLQRrvllltkerdgyraiLESYDKELTMS-NYSPQLLERIEEAEDMTQKmqa 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1130 HNSILETALAKREADLVQLNLQVQAVlqrkEEEDRQMKQLVQALQVSLEKEkmEVNSLKEQMAAARIEAGHNRRHFKaaT 1209
Cdd:pfam05557 395 HNEEMEAQLSVAEEELGGYKQQAQTL----ERELQALRQQESLADPSYSKE--EVDSLRRKLETLELERQRLREQKN--E 466
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1210 LELSEVKKELQAKEHLVQT--LQAEVDELQIQDGKHSQEIAQFQTELAEARTQLQLLQKKLDEQMSQQPTGS----QEME 1283
Cdd:pfam05557 467 LEMELERRCLQGDYDPKKTkvLHLSMNPAAEAYQQRKNQLEKLQAEIERLKRLLKKLEDDLEQVLRLPETTStmnfKEVL 546
|
570
....*....|....*...
gi 568935679 1284 DLKWELDQKEREIQSLKQ 1301
Cdd:pfam05557 547 DLRKELESAELKNQRLKE 564
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
746-1097 |
9.92e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 46.81 E-value: 9.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 746 LQARLEELQREadsREDAIHFLQNEKIVLEVALQSAKSDKEELDRGARRLEEDTEETSGLLEQLRQDLavksNQVEHLQQ 825
Cdd:pfam07888 32 LQNRLEECLQE---RAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKH----EELEEKYK 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 826 ETATLRKQMQKVKEQFVQQKVMVEAYRRDATSKDQLINELKATKkrlDSEMKELRQELIKLQGEKKTVEVEHSRLQKDMS 905
Cdd:pfam07888 105 ELSASSEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLER---ETELERMKERAKKAGAQRKEEEAERKQLQAKLQ 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 906 LVHQQMAELEGHLQSVQKERDEMEIHLQSLKFDKEQMIALTEANETLKKQIEELQQEakkaiteqkqkmkrlgsdLSSAQ 985
Cdd:pfam07888 182 QTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEE------------------LRSLQ 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 986 KEMktkhKAYENAVSILSRRLQEALASKEATDAELNQLR---AQSTGGSSDPVLHEKiralevelqnVGQSKILLEKE-L 1061
Cdd:pfam07888 244 ERL----NASERKVEGLGEELSSMAAQRDRTQAELHQARlqaAQLTLQLADASLALR----------EGRARWAQEREtL 309
|
330 340 350
....*....|....*....|....*....|....*.
gi 568935679 1062 QEVITMTSQELEESREKVLELEDELQESRGFRRKIK 1097
Cdd:pfam07888 310 QQSAEADKDRIEKLSAELQRLEERLQEERMEREKLE 345
|
|
| CCDC73 |
pfam15818 |
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil ... |
819-1245 |
1.12e-04 |
|
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil containing proteins. The function is not known. The alternative name is sarcoma antigen NY-SAR-79.
Pssm-ID: 464893 [Multi-domain] Cd Length: 1048 Bit Score: 46.86 E-value: 1.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 819 QVEHLQQETATLRKQMQKVKEQFVQQKVMVEAYRRDATSKDQLINELKatkkrlDSEMKELRQELIKLQGEKKTVEVEHS 898
Cdd:pfam15818 43 QKETLQNQKETLAKQHKEAMAVFKKQLQMKMCALEEEKGKYQLATEIK------EKEIEGLKETLKALQVSKYSLQKKVS 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 899 RLQKDMSLVHQQMAELEGHLQSVQKERDEMEIHLQSLKFDKEQMIALTEANETLKKQIEELQQEAKKAITEQKQKMKRLG 978
Cdd:pfam15818 117 EMEQKLQLHLLAKEDHHKQLNEIEKYYATITGQFGLVKENHGKLEQNVQEAIQLNKRLSALNKKQESEICSLKKELKKVT 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 979 SDLSSAQKEMKTKHKAYENAVSILSRRLQEaLASKEATDAELNQlraqstggssdpVLHEKIRALEVELQNVGQS----K 1054
Cdd:pfam15818 197 SDLIKSKVTCQYKMGEENINLTIKEQKFQE-LQERLNMELELNK------------KINEEITHIQEEKQDIIISfqhmQ 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1055 ILLEKELQEVITMTSqELEESREK--VLELEDELQesrgfRRKIKRLEEsnKKLALELEHERGKLTGLGQSNAALREHNS 1132
Cdd:pfam15818 264 QLLQQQTQANTEMEA-ELKALKENnqTLERDNELQ-----REKVKENEE--KFLNLQNEHEKALGTWKKHVEELNGEINE 335
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1133 ILETALAKREADLVQLNLQVQAVLQRKEEEDRQMKQLVQALQVS--LEKEKMEVNSLKEQMAAARIEaGHNRRHFKAATL 1210
Cdd:pfam15818 336 IKNELSSLKETHIKLQEHYNKLCNQKKFEEDKKFQNVPEVNNENseMSTEKSENLIIQKYNSEQEIR-EENTKSFCSDTE 414
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 568935679 1211 ELSEVKKELQAKE--------HLVQTLQAEVDELQIQDGKHSQ 1245
Cdd:pfam15818 415 YRETEKKKGPPVEeiiiedlqVLEKSFKNEIDTSVPQDKNQSE 457
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
945-1107 |
1.15e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 46.69 E-value: 1.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 945 LTEANETLKKQIEELQQEA----KKAITEQKQKMKRLGSDLSSAQKEMKTKHKAYENAVSILSRRLQEALASKEATDAEL 1020
Cdd:PRK12704 33 IKEAEEEAKRILEEAKKEAeaikKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEEL 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1021 NQLRAQstggssdpvLHEKIRALEVELQNVGQSKILLEKELQEVITMTSqelEESREKVLE-LEDELQESRGfrRKIKRL 1099
Cdd:PRK12704 113 EKKEKE---------LEQKQQELEKKEEELEELIEEQLQELERISGLTA---EEAKEILLEkVEEEARHEAA--VLIKEI 178
|
....*...
gi 568935679 1100 EESNKKLA 1107
Cdd:PRK12704 179 EEEAKEEA 186
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1189-1356 |
1.58e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.30 E-value: 1.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1189 EQMAAARIEAGHNRRHFKAATLELSEVKKELQAKEHLVQTLQAEVDELQIQDGKHSQEIaqfqtELAEARTQLQLLQKKL 1268
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQ-----ELEALEAELAELPERL 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1269 DEQMSQQptgsQEMEDLKWELDQKEREIQSLKQQLDLTEQQG----KKELEGTQQTLQTIKSELEMVQEDLSETQKDKFM 1344
Cdd:COG4717 149 EELEERL----EELRELEEELEELEAELAELQEELEELLEQLslatEEELQDLAEELEELQQRLAELEEELEEAQEELEE 224
|
170
....*....|..
gi 568935679 1345 LQAKVSELKNNM 1356
Cdd:COG4717 225 LEEELEQLENEL 236
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
681-972 |
1.67e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 45.66 E-value: 1.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 681 QKVADAAASLEQQLEQVKLTLFQRDQQLAALQQEHLDVIKQLTSTQEALQAKGQSLDDLHTRYDELQARLEELQREADSR 760
Cdd:COG4372 20 PKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQA 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 761 EDAIHFLQNEKIVLEVALQSAKSDKEELDRGARRLEEDTEETSGLLEQLRQDLAVKSNQVEHLQQETATLRKQMQKVKEQ 840
Cdd:COG4372 100 QEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEA 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 841 FVQQKVMVEAYRRDATSKDQLINELKATKKRLDSEMKELRQELIKLQGEKKTVEVEHSRLQKDMSLVHQQMAELEGHLQS 920
Cdd:COG4372 180 EAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKE 259
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 568935679 921 VQKERDEMEIHLQSLKFDKEQMIALTEANETLKKQIEELQQEAKKAITEQKQ 972
Cdd:COG4372 260 IEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIG 311
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
609-1145 |
1.77e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 46.43 E-value: 1.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 609 LKLENVSLSHQLTETQHRSI-KEKERIAVQLQSIEADMLDQEAAFVQIREAKTM----------VEEDLQRRLEE---FE 674
Cdd:PRK01156 197 LELENIKKQIADDEKSHSITlKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMknryeseiktAESDLSMELEKnnyYK 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 675 GEREQLQKVADAAA-----------SLEQQLEQVKLTLFQRDQQLaalqQEHLDVIKQLtstqEALQAKGQSLDDLHTRY 743
Cdd:PRK01156 277 ELEERHMKIINDPVyknrnyindyfKYKNDIENKKQILSNIDAEI----NKYHAIIKKL----SVLQKDYNDYIKKKSRY 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 744 DELQARLEELQREADSREDAIHFLQNEKIVLEVALQSAKSDKEELDRGARRLEEDTEETSGLLEQLRQDLAVKSNQVEHL 823
Cdd:PRK01156 349 DDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSL 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 824 QQETATLRKQMQKVKEQFV----QQKVMVEAYRRDATSKDQLINELKATKKRLDSEMKELRQELIKLQGEKKTVEVEHSR 899
Cdd:PRK01156 429 NQRIRALRENLDELSRNMEmlngQSVCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEY 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 900 LQKDMslVHQQMAElEGHLQSVQKERDEMEIHLQSLKFDKEQMIALTEANETLKkqIEELQQEAkkaiTEQKQKMKRLGS 979
Cdd:PRK01156 509 LESEE--INKSINE-YNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSLK--LEDLDSKR----TSWLNALAVISL 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 980 -DLSSAQKEMKTKHKAYENAVSilsrRLQEalaskeatdAELNQLRAQSTGGSSDPVLHEKIRALEVELQNVGQSKILLE 1058
Cdd:PRK01156 580 iDIETNRSRSNEIKKQLNDLES----RLQE---------IEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIE 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1059 KeLQEVItmtsQELEESREKVLELEDELQEsrgFRRKIKRLEESNKKLALELEHERGKLTGLGQSNAALREHNSILETAL 1138
Cdd:PRK01156 647 K-LRGKI----DNYKKQIAEIDSIIPDLKE---ITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRI 718
|
....*..
gi 568935679 1139 AKREADL 1145
Cdd:PRK01156 719 NDINETL 725
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
717-1358 |
1.87e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 46.05 E-value: 1.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 717 DVIKQLTST-------QEALQAKGQSLDDLHTRYDELQARLEELQREADSREDAIHFLQNEKIVLEVALQSAKSDKEEld 789
Cdd:PRK01156 173 DVIDMLRAEisnidylEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDM-- 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 790 rgARRLEEDTEETSGLLE-QLRQDLAVKSNQVEHLQQETATLRKQMQKVKEQFvqqkvmveAYRRDATSKDQLINELKAT 868
Cdd:PRK01156 251 --KNRYESEIKTAESDLSmELEKNNYYKELEERHMKIINDPVYKNRNYINDYF--------KYKNDIENKKQILSNIDAE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 869 KKRLDSEMKELrqeliklqgekktvevehSRLQKDmslvHQQMAELeghlqsvQKERDEMEIHLQSLKFDKEQMIALTEA 948
Cdd:PRK01156 321 INKYHAIIKKL------------------SVLQKD----YNDYIKK-------KSRYDDLNNQILELEGYEMDYNSYLKS 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 949 NETLKKQIEELQQEAKKAITEqkqkmkrlgsdlssaqkemktkhkayenavsiLSRRLQEALASKEATDAELNQLRAQST 1028
Cdd:PRK01156 372 IESLKKKIEEYSKNIERMSAF--------------------------------ISEILKIQEIDPDAIKKELNEINVKLQ 419
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1029 GGSSD-PVLHEKIRALEVELQNVGQSKILLEKELQEVITMTSQELEESREKVlelEDELQESRGFRRKIKRLEESNKKLA 1107
Cdd:PRK01156 420 DISSKvSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKSNHII---NHYNEKKSRLEEKIREIEIEVKDID 496
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1108 LELEHERGkltglgqsnaalrehnsiLETALAKREadlvqlnlqvqavLQRKEEEDRQMKqlvqALQVSLEKEKMEVNSL 1187
Cdd:PRK01156 497 EKIVDLKK------------------RKEYLESEE-------------INKSINEYNKIE----SARADLEDIKIKINEL 541
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1188 KEqmAAARIEAGHNRrhFKAATLElsevkkELQAKEHLVQTLQAEVDELQIQDGKHSQEiaQFQTELAEARTQLQLLQKK 1267
Cdd:PRK01156 542 KD--KHDKYEEIKNR--YKSLKLE------DLDSKRTSWLNALAVISLIDIETNRSRSN--EIKKQLNDLESRLQEIEIG 609
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1268 LDEQMSQQPTGSQEMEDLKWELDQKEREIQSLKQQLDltEQQGK--------KELEGTQQTLQTIKSELEMVQEDLSETQ 1339
Cdd:PRK01156 610 FPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIE--KLRGKidnykkqiAEIDSIIPDLKEITSRINDIEDNLKKSR 687
|
650
....*....|....*....
gi 568935679 1340 KDKFMLQAKVSELKNNMKT 1358
Cdd:PRK01156 688 KALDDAKANRARLESTIEI 706
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
871-1015 |
2.05e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.53 E-value: 2.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 871 RLDSEMKELRQELIKLQGEKKTVEVEHSRLQKDMSLVHQQMAELEGHLQSVQKERDEMEIHLQSLKFDKEQMiALTEANE 950
Cdd:COG1579 21 RLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEYE-ALQKEIE 99
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568935679 951 TLKKQIEEL---QQEAKKAITEQKQKMKRLGSDLSSAQKEMKTKHKAYENAVSILSRRLQEALASKEA 1015
Cdd:COG1579 100 SLKRRISDLedeILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREE 167
|
|
| ClyA_Cry6Aa-like |
cd22656 |
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes ... |
1211-1341 |
2.22e-04 |
|
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes pesticidal Cry6Aa toxin from Bacillus thuringiensis, one of the many parasporal crystal (Cry) toxins produced during the sporulation phase of growth. Many of these proteins are toxic to numerous insect species and have been effectively used as proteinaceous insecticides to directly kill insect pests; some have been used to control insect growth on transgenic agricultural plants. Cry6Aa exists as a protoxin, which is activated by cleavage using trypsin. Structure studies for Cry6Aa support a mechanism of action by pore formation, similar to cytolysin A (ClyA)-type alpha pore-forming toxins (alpha-PFTs) such as HblB, and bioassay and mutation studies show that Cry6Aa is an active pore-forming toxin. Cry6Aa shows atypical features compared to other members of alpha-PFTs, including internal repeat sequences and small loop regions within major alpha helices.
Pssm-ID: 439154 [Multi-domain] Cd Length: 309 Bit Score: 45.05 E-value: 2.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1211 ELSEVKKELQAkehLVQTLQAEVDELQIQDGKHSQEIAQFQTELAEARTQLQLLQKKLDEQMSQ--QPTGSQEMEDLKWE 1288
Cdd:cd22656 111 ELEEAKKTIKA---LLDDLLKEAKKYQDKAAKVVDKLTDFENQTEKDQTALETLEKALKDLLTDegGAIARKEIKDLQKE 187
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 568935679 1289 LDQKEREI-QSLKQQLDLTEQQGKKElEGTQQTLQTIKSELEMVQEDLSETQKD 1341
Cdd:cd22656 188 LEKLNEEYaAKLKAKIDELKALIADD-EAKLAAALRLIADLTAADTDLDNLLAL 240
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
835-1015 |
2.41e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 45.54 E-value: 2.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 835 QKVKEQFVQQKVMVEAYRRDA-TSKDQLINELKatkkrldSEMKELRQELIKlqgEKKTVEVEHSRLQKDmslVHQQMAE 913
Cdd:PRK12704 31 AKIKEAEEEAKRILEEAKKEAeAIKKEALLEAK-------EEIHKLRNEFEK---ELRERRNELQKLEKR---LLQKEEN 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 914 LEGHLQSVQKERDEMEIHLQSLkfdkeqmialteanETLKKQIEELQQEAKKAITEQKQKMKRLgSDLSSAQ-KEM---K 989
Cdd:PRK12704 98 LDRKLELLEKREEELEKKEKEL--------------EQKQQELEKKEEELEELIEEQLQELERI-SGLTAEEaKEIlleK 162
|
170 180
....*....|....*....|....*...
gi 568935679 990 TKHKAYENAVSILSRRLQEA--LASKEA 1015
Cdd:PRK12704 163 VEEEARHEAAVLIKEIEEEAkeEADKKA 190
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
563-1304 |
2.69e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 45.72 E-value: 2.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 563 EITSLQHARQWYQQQLTLAQEARVRLQGEMAhiqvgqmTQAGLLEHLKLENVSLSHQLTETQhrsikEKERIAVQLQSIE 642
Cdd:PRK04863 287 EALELRRELYTSRRQLAAEQYRLVEMARELA-------ELNEAESDLEQDYQAASDHLNLVQ-----TALRQQEKIERYQ 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 643 ADMLDQEAAFvqirEAKTMVEEDLQRRLEEFEGEREQLQKVADAAASleqQLEQVKLTLfqRDQQLAALQQEHldVIKQL 722
Cdd:PRK04863 355 ADLEELEERL----EEQNEVVEEADEQQEENEARAEAAEEEVDELKS---QLADYQQAL--DVQQTRAIQYQQ--AVQAL 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 723 TSTQEALQAKGQSLDDLHTRYDELQARLEELQREADSREDAIHFLQNEKIVLEVALQSAKS-----DKEELDRGARRLEE 797
Cdd:PRK04863 424 ERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKiagevSRSEAWDVARELLR 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 798 DTEETSGL---LEQLRQDLAvKSNQVEHLQQETATLRKQMQKVKEQFVQQKVMVEAYRRDAtskDQLINELKATKKRLDS 874
Cdd:PRK04863 504 RLREQRHLaeqLQQLRMRLS-ELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEEL---EARLESLSESVSEARE 579
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 875 EMKELRQELIKLQGEKKTVE------------VEHSRLQ-----KDMSLVHQQMAELEGHLQSVQKERDEMEihlqslkf 937
Cdd:PRK04863 580 RRMALRQQLEQLQARIQRLAarapawlaaqdaLARLREQsgeefEDSQDVTEYMQQLLERERELTVERDELA-------- 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 938 dkeqmialtEANETLKKQIEELQQEAKKAITEQKQKMKRLGSDLSSAQKEMKTKHKA-YENA----------VSILSRrL 1006
Cdd:PRK04863 652 ---------ARKQALDEEIERLSQPGGSEDPRLNALAERFGGVLLSEIYDDVSLEDApYFSAlygparhaivVPDLSD-A 721
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1007 QEALASKEAT-------DAELNQLRAqstgGSSDPVLHEKIRALEVELQNVGQSKI----LLEKELQEvitmtsQELEES 1075
Cdd:PRK04863 722 AEQLAGLEDCpedlyliEGDPDSFDD----SVFSVEELEKAVVVKIADRQWRYSRFpevpLFGRAARE------KRIEQL 791
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1076 REKVLELEDELQESRGFRRKIKRLEES-----NKKLAL--------ELEHERGKLTGLGQSNAALREHNSILETALAKRE 1142
Cdd:PRK04863 792 RAEREELAERYATLSFDVQKLQRLHQAfsrfiGSHLAVafeadpeaELRQLNRRRVELERALADHESQEQQQRSQLEQAK 871
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1143 ADLVQLN--------LQVQAVLQRKEEEDRQMKQL------VQALQVSLEKEKMEVNSLK------EQMAAARIEAGHNR 1202
Cdd:PRK04863 872 EGLSALNrllprlnlLADETLADRVEEIREQLDEAeeakrfVQQHGNALAQLEPIVSVLQsdpeqfEQLKQDYQQAQQTQ 951
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1203 RHFKAATLELSEVkkeLQAKEHL----VQTLQAEVDELQIQdgkHSQEIAQFQTELAEARTQLQLLQKKLDEQmsqqptg 1278
Cdd:PRK04863 952 RDAKQQAFALTEV---VQRRAHFsyedAAEMLAKNSDLNEK---LRQRLEQAEQERTRAREQLRQAQAQLAQY------- 1018
|
810 820
....*....|....*....|....*.
gi 568935679 1279 SQEMEDLKWELDQKEREIQSLKQQLD 1304
Cdd:PRK04863 1019 NQVLASLKSSYDAKRQMLQELKQELQ 1044
|
|
| PRK06975 |
PRK06975 |
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed |
666-781 |
2.71e-04 |
|
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Pssm-ID: 235899 [Multi-domain] Cd Length: 656 Bit Score: 45.48 E-value: 2.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 666 LQRRLEEFEGEREQLQKVADA-AASLEQQLEQVKLTLFQRDQQLAALQqehldviKQLTSTQEALQAKGQSLDDLHTRYD 744
Cdd:PRK06975 344 LNRKVDRLDQELVQRQQANDAqTAELRVKTEQAQASVHQLDSQFAQLD-------GKLADAQSAQQALEQQYQDLSRNRD 416
|
90 100 110
....*....|....*....|....*....|....*..
gi 568935679 745 ELQarLEELQREADSREDAIHFLQNEKIVLEvALQSA 781
Cdd:PRK06975 417 DWM--IAEVEQMLSSASQQLQLTGNVQLALI-ALQNA 450
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
430-990 |
2.86e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 45.50 E-value: 2.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 430 EKAELQAQLAALSTRLQaQVEHSHSSQQKQdsLSSEVDTLKQSCWDLERAMTDLQSMLEAKNASLASSNNDLQVAEEQYQ 509
Cdd:pfam05557 3 ELIESKARLSQLQNEKK-QMELEHKRARIE--LEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 510 RLMAKVEDMQRNILSKDNTVHDLRQQMTALQSqlqqvqlERTTLTSKLQASQAEITSLQHARQWYQQQLtlaQEARVRLQ 589
Cdd:pfam05557 80 LKKKYLEALNKKLNEKESQLADAREVISCLKN-------ELSELRRQIQRAELELQSTNSELEELQERL---DLLKAKAS 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 590 GEMAHIQVGQMTQAGLLEH-LKLENVSLSHQLTETQHRSIK----EKERIAvQLQSIEADMLDQEAAFVQIREAKTMVEE 664
Cdd:pfam05557 150 EAEQLRQNLEKQQSSLAEAeQRIKELEFEIQSQEQDSEIVKnsksELARIP-ELEKELERLREHNKHLNENIENKLLLKE 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 665 ---DLQRRLEEFEGEREQLQKVADAAASLEQQLEQVK-------LTLFQRD---QQLAALQQEHLDVIKQLTSTQEALQA 731
Cdd:pfam05557 229 eveDLKRKLEREEKYREEAATLELEKEKLEQELQSWVklaqdtgLNLRSPEdlsRRIEQLQQREIVLKEENSSLTSSARQ 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 732 KGQSLDDLHTRYDELQARLEELQREADSREDAIHFLQNEKIVL-------EVALQSAKSD------KEELDRGARRLEED 798
Cdd:pfam05557 309 LEKARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLtkerdgyRAILESYDKEltmsnySPQLLERIEEAEDM 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 799 TEETSGLLEQLRQDLAVKSNQVEHLQQETATLRKQMQKVKEQfvQQKVMVEAYRRDATSKDQLINELKATKKRLDSEMKE 878
Cdd:pfam05557 389 TQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQALRQQ--ESLADPSYSKEEVDSLRRKLETLELERQRLREQKNE 466
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 879 L-----RQELIKLQGEKKTVEVEHSrlQKDMSLVHQQMAELeghLQSVQKERDEMEIHLQSLKFDKEQMIALteaNETLK 953
Cdd:pfam05557 467 LemeleRRCLQGDYDPKKTKVLHLS--MNPAAEAYQQRKNQ---LEKLQAEIERLKRLLKKLEDDLEQVLRL---PETTS 538
|
570 580 590
....*....|....*....|....*....|....*..
gi 568935679 954 KQIEELQQEAKKAITEQKQKMKRLGSDLSSAQKEMKT 990
Cdd:pfam05557 539 TMNFKEVLDLRKELESAELKNQRLKEVFQAKIQEFRD 575
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
629-840 |
2.93e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 2.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 629 KEKERIAVQLQSIEADMLDQEAAFVQIREAKTMVEEDLQRRLEEFEGEREQLQKVADAAASLEQQLEQVKLTLFQRDQQL 708
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 709 AAL-----QQEHLDVIKQLTSTQEALQAK------GQSLDDLHTRYDELQARLEELQREADSredaihfLQNEKIVLEVA 777
Cdd:COG4942 107 AELlralyRLGRQPPLALLLSPEDFLDAVrrlqylKYLAPARREQAEELRADLAELAALRAE-------LEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568935679 778 LQSAKSDKeeldrgaRRLEEDTEETSGLLEQLRQDLAVKSNQVEHLQQETATLRKQMQKVKEQ 840
Cdd:COG4942 180 LAELEEER-------AALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
441-989 |
3.19e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 45.48 E-value: 3.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 441 LSTRLQAQVEHSHSSQQKQDSLSSEVDTLKQScwdLERAMTDLQSMLEaknaslassnnDLQVAEEqyqrlmakvedmqr 520
Cdd:pfam05483 273 LEEKTKLQDENLKELIEKKDHLTKELEDIKMS---LQRSMSTQKALEE-----------DLQIATK-------------- 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 521 nilskdnTVHDLRQQMTALQSQLQQVQLERTTLTSKLQASqaeITSLQHARQWYQQQLTLAQEARVRLQGEMAH--IQVG 598
Cdd:pfam05483 325 -------TICQLTEEKEAQMEELNKAKAAHSFVVTEFEAT---TCSLEELLRTEQQRLEKNEDQLKIITMELQKksSELE 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 599 QMTQAGLLEHLKLENVSLSHQLTETQHRSIKEKERIAVQLQSIEADMLdqeaAFVQIREAKTmveEDLQRRLEEFE-GER 677
Cdd:pfam05483 395 EMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELI----FLLQAREKEI---HDLEIQLTAIKtSEE 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 678 EQLQKVADAAASLE-QQLEQVKLTLFQRDQQL--AALQQEHLDVIKQLTSTQEALQAKGQSLDDLHTRYDELQARLEELQ 754
Cdd:pfam05483 468 HYLKEVEDLKTELEkEKLKNIELTAHCDKLLLenKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLR 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 755 READS-REDAIHFLQNEKIVLEVALQSAKSDKEELDRGARRLEEDTEETSGLLEQLRQdlavKSNQVEHLQQETATLRKQ 833
Cdd:pfam05483 548 DELESvREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIEN----KNKNIEELHQENKALKKK 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 834 MQKVKEQFVQQKVMVEAYRRDATSKDQLINELKATKKRlDSEMKELRQELIKLQGEKKTVEVEHS-RLQKDMSL-----V 907
Cdd:pfam05483 624 GSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQK-EIEDKKISEEKLLEEVEKAKAIADEAvKLQKEIDKrcqhkI 702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 908 HQQMAELEGHLQSVQKERDEMEIHLQSLKFDKEQMIALTEANETLKKQIEELQQEAKKAI---TEQKQKMKRLGSDLSSA 984
Cdd:pfam05483 703 AEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLeieKEEKEKLKMEAKENTAI 782
|
....*
gi 568935679 985 QKEMK 989
Cdd:pfam05483 783 LKDKK 787
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
746-1339 |
3.20e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 45.20 E-value: 3.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 746 LQARLEELQREADSREDAIHFLQNEKIVLEVALQSAKSDKEELDRGARRLEEDTEETSGLLEQLRQDLAVKSNQVEHLQQ 825
Cdd:pfam10174 72 LQLTIQALQDELRAQRDLNQLLQQDFTTSPVDGEDKFSTPELTEENFRRLQSEHERQAKELFLLRKTLEEMELRIETQKQ 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 826 ETATLRKQMQKVKEqFVQQKVMVEAYRRDATSKDQLINELKATKKRLDSEMKELRQELIKLQgekktvEVEHSRLQ---- 901
Cdd:pfam10174 152 TLGARDESIKKLLE-MLQSKGLPKKSGEEDWERTRRIAEAEMQLGHLEVLLDQKEKENIHLR------EELHRRNQlqpd 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 902 -KDMSLVHQQMAELEGHLQSVQKERDEMEIHLQSLKfdKEQMIALTEANETLKkQIEELQQEAKKaiteQKQKMKRLGSD 980
Cdd:pfam10174 225 pAKTKALQTVIEMKDTKISSLERNIRDLEDEVQMLK--TNGLLHTEDREEEIK-QMEVYKSHSKF----MKNKIDQLKQE 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 981 LSSAQKEMKTKHKAYENAVSILSRRLQEALASKEATDAElnQLRAQstggssdpVLHEKIRALEVELQnvgqskillekE 1060
Cdd:pfam10174 298 LSKKESELLALQTKLETLTNQNSDCKQHIEVLKESLTAK--EQRAA--------ILQTEVDALRLRLE-----------E 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1061 LQEVITMTSQELEESREKVLELEDELQESRGF----RRKIKRLEESNKKLALELEHERGKLTGLGQSNAALREHNSILET 1136
Cdd:pfam10174 357 KESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMldvkERKINVLQKKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDT 436
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1137 ALAKREADLVQLNLQVQAVLQRKEEEDRQ--------------MKQLVQALQVSLEKEKMEVNSLKEQMAAARIEAGHNR 1202
Cdd:pfam10174 437 ALTTLEEALSEKERIIERLKEQREREDRErleeleslkkenkdLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKD 516
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1203 RHFKAATLELSEVKKELQAKEHLVQTLQ-AEVDE------------LQIQDGKHSQEIAQFQTE-------LAEARTQLQ 1262
Cdd:pfam10174 517 SKLKSLEIAVEQKKEECSKLENQLKKAHnAEEAVrtnpeindrirlLEQEVARYKEESGKAQAEverllgiLREVENEKN 596
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1263 LLQKKLDE-------QMSQQPTGSQEMEDLKWELDQKEREI--QSLKQQLDLTEQQGKKELEGTQQTLQTIKSELEMVQE 1333
Cdd:pfam10174 597 DKDKKIAElesltlrQMKEQNKKVANIKHGQQEMKKKGAQLleEARRREDNLADNSQQLQLEELMGALEKTRQELDATKA 676
|
....*.
gi 568935679 1334 DLSETQ 1339
Cdd:pfam10174 677 RLSSTQ 682
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
945-1352 |
3.42e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.49 E-value: 3.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 945 LTEANETLKKQIEELQQeakkAITEQKQKMKRLGSDLSSAQKEMKTKHKAYENAVSILSRRLQEALASK-------EATD 1017
Cdd:pfam15921 94 LNESNELHEKQKFYLRQ----SVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKclkedmlEDSN 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1018 AELNQLRAQSTggSSDPVLHEkIRALEVELQNVGQSKIlleKELQEVITMTSQELEESREKVL-ELEDELQESRGfrrKI 1096
Cdd:pfam15921 170 TQIEQLRKMML--SHEGVLQE-IRSILVDFEEASGKKI---YEHDSMSTMHFRSLGSAISKILrELDTEISYLKG---RI 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1097 KRLEESNKKLALELEHERGKLtglgqsnaaLREHNSILETALAKREADLVQLNLQVQAVLQRKEEEDRQMKQLVQALQVS 1176
Cdd:pfam15921 241 FPVEDQLEALKSESQNKIELL---------LQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQ 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1177 LEKEKMEVNSLKEQMAAARIEAGHNRRHFKAatlELSEVKKELQAKEHLVQTLQAEVDELQIQDGKHSQEIAQFQTELAE 1256
Cdd:pfam15921 312 NSMYMRQLSDLESTVSQLRSELREAKRMYED---KIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHK 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1257 ARTQLQLlQKKLDEQMSQQPTG-SQEMEDLKWELDQKEREIQSLKQQLDLTEQQGKKELEGTQQTLQTIKSELEMVQEDL 1335
Cdd:pfam15921 389 REKELSL-EKEQNKRLWDRDTGnSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLT 467
|
410
....*....|....*..
gi 568935679 1336 SETQKDKFMLQAKVSEL 1352
Cdd:pfam15921 468 AQLESTKEMLRKVVEEL 484
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
397-757 |
3.55e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 45.33 E-value: 3.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 397 AEPQDELL-QILKDKRRLEGQVEALSLEASQAL---QEKAELQAQLAALSTRLQAQVEH------SHSSQQKQDSLSSEV 466
Cdd:COG3096 277 ANERRELSeRALELRRELFGARRQLAEEQYRLVemaRELEELSARESDLEQDYQAASDHlnlvqtALRQQEKIERYQEDL 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 467 DtlkqscwDLERAMTDLQSMLEAKNASLASSNNDLQVAEEQYQRLMAKVEDMQRNILSKDNTVHDLRQQMTALQSQLQQV 546
Cdd:COG3096 357 E-------ELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTRAIQYQQAVQALEKARALC 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 547 QLERTTLTS---KLQASQAEITSLQHARQWYQQQLTLAQEAR----------VRLQGEMAHIQVGQMTQAGLLEHLKLEN 613
Cdd:COG3096 430 GLPDLTPENaedYLAAFRAKEQQATEEVLELEQKLSVADAARrqfekayelvCKIAGEVERSQAWQTARELLRRYRSQQA 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 614 VSlshQLTETQHRSIKEKERIAVQLQSIEADMLDQEAAFVQIREAKTMVEEDLQRRLEEFEGEREQLQKVADAAASLEQQ 693
Cdd:COG3096 510 LA---QRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQ 586
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568935679 694 LEQVKltlfQRDQQLA-----------ALQQEHLDVIKQLTSTQEALQAKGQSLDDLH---TRYDELQARLEELQREA 757
Cdd:COG3096 587 LEQLR----ARIKELAarapawlaaqdALERLREQSGEALADSQEVTAAMQQLLEREReatVERDELAARKQALESQI 660
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
390-1289 |
3.67e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.17 E-value: 3.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 390 VSMESSLAEPQDELLQILKDKRRLEGQVEALSLEASQALQEKAELQAQLAALSTRLQAQVEHSHSSQQKQDSLSSEVDTL 469
Cdd:pfam01576 225 AELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEAL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 470 KqscwdleramTDLQSMLEAKNAslassNNDLQVAEEQYQRLMAKVedMQRNILSKDNTVHDLRQQMTALQSqlqqvqle 549
Cdd:pfam01576 305 K----------TELEDTLDTTAA-----QQELRSKREQEVTELKKA--LEEETRSHEAQLQEMRQKHTQALE-------- 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 550 rtTLTSKLQASQAEITSLQHARQwyqqqltlaqearvRLQGEMAHIQVgqmtqagllehlklENVSLSHQLTETQHRsik 629
Cdd:pfam01576 360 --ELTEQLEQAKRNKANLEKAKQ--------------ALESENAELQA--------------ELRTLQQAKQDSEHK--- 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 630 eKERIAVQLQSIEADMLDQEAAFVQIREAKTMVEEDLQRRLEEFEGEREQLQKVADAAASLEQQLEQVKLTLFQRDQQ-- 707
Cdd:pfam01576 407 -RKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQkl 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 708 -----LAALQQEHLDVIKQLTSTQEALQAKGQSLDDLHTRYDELQARLEELQREADSREDAIHFLQNEKIVLEVALQSAK 782
Cdd:pfam01576 486 nlstrLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKA 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 783 SDKEELDRGARRLEEDTEETSGLLEQLRQDLavksNQVEHLQQETATLRKQMQKVKEQFVQQKVMVEAYRRD----ATSK 858
Cdd:pfam01576 566 AAYDKLEKTKNRLQQELDDLLVDLDHQRQLV----SNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREketrALSL 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 859 DQLINELKATKKRLDSEMKELRQELIKLQGEKKTV-----EVEHSR--LQKDMSLVHQQMAELEGHLQSVQKERDEMEIH 931
Cdd:pfam01576 642 ARALEEALEAKEELERTNKQLRAEMEDLVSSKDDVgknvhELERSKraLEQQVEEMKTQLEELEDELQATEDAKLRLEVN 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 932 LQSLKFDKEQMI-ALTEANE----TLKKQIEELQQEAKKAITEQKQKM---KRLGSDLSSAQKEMKTKHKAYENAVSILs 1003
Cdd:pfam01576 722 MQALKAQFERDLqARDEQGEekrrQLVKQVRELEAELEDERKQRAQAVaakKKLELDLKELEAQIDAANKGREEAVKQL- 800
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1004 RRLQEALASKEATDAELNQLRAQSTGGSSDPvlHEKIRALEVELQNVGQSKILLEKELQEVITMTSQELEESREKVLELE 1083
Cdd:pfam01576 801 KKLQAQMKDLQRELEEARASRDEILAQSKES--EKKLKNLEAELLQLQEDLAASERARRQAQQERDELADEIASGASGKS 878
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1084 DELQESRGFRRKIKRLEESNKKLALELEHERGKLTGLGQSNAALREHNSILETALAKREADLVQLNLQVQAVLQRKEEED 1163
Cdd:pfam01576 879 ALQDEKRRLEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQLTTELAAERSTSQKSESARQQLERQNKELKAKLQEME 958
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1164 RQMKQLVQALQVSLEKekmEVNSLKEQMAAARIEAGHNRRHFKAATLELSEVKKELQAKEHLVQTLQAEVDELQIQDGKH 1243
Cdd:pfam01576 959 GTVKSKFKSSIAALEA---KIAQLEEQLEQESRERQAANKLVRRTEKKLKEVLLQVEDERRHADQYKDQAEKGNSRMKQL 1035
|
890 900 910 920
....*....|....*....|....*....|....*....|....*.
gi 568935679 1244 SQEIAQFQTELAEARTQLQLLQKKLDEQMSQQPTGSQEMEDLKWEL 1289
Cdd:pfam01576 1036 KRQLEEAEEEASRANAARRKLQRELDDATESNESMNREVSTLKSKL 1081
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
556-881 |
4.03e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 45.33 E-value: 4.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 556 KLQASQAEITS-LQHARQWyqqqLTLAQEArVRLQGEMAHIQ--VGQMTQAGLLEHLKLENVSLSHQLTETQ-HRSIKEK 631
Cdd:COG3096 317 ELSARESDLEQdYQAASDH----LNLVQTA-LRQQEKIERYQedLEELTERLEEQEEVVEEAAEQLAEAEARlEAAEEEV 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 632 ERIAVQLqsieADMldQEAAFVQ-------------IREAKTMVE------EDLQRRLEEFegeREQLQKVADAAASLEQ 692
Cdd:COG3096 392 DSLKSQL----ADY--QQALDVQqtraiqyqqavqaLEKARALCGlpdltpENAEDYLAAF---RAKEQQATEEVLELEQ 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 693 QLEQVKLTLFQRDQQLAALQQEHLDVIK-QLTSTQEALQAKGQSLDDLHTRYDELQARLEELQREADSREDAIHFLQnek 771
Cdd:COG3096 463 KLSVADAARRQFEKAYELVCKIAGEVERsQAWQTARELLRRYRSQQALAQRLQQLRAQLAELEQRLRQQQNAERLLE--- 539
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 772 ivlEVALQSAK--SDKEELDRGARRLEEDTEETSGLLEQLRQDLAVKSNQVEHLQQETATLRKQ----------MQKVKE 839
Cdd:COG3096 540 ---EFCQRIGQqlDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARapawlaaqdaLERLRE 616
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 568935679 840 Q-------------FVQQkvMVEAYRRDATSKDQLInelkATKKRLDSEMKELRQ 881
Cdd:COG3096 617 QsgealadsqevtaAMQQ--LLEREREATVERDELA----ARKQALESQIERLSQ 665
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
668-840 |
4.51e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 4.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 668 RRLEEFEGEREQLQKVADAAASLEQQLEQVKLTLFQRDQQLAALQQEhldvIKQLTSTQEALQAKgQSLDDLHTRYDELQ 747
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAE----LEELREELEKLEKL-LQLLPLYQELEALE 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 748 ARLEELQREADSREDAIHFLQNEKIVLEVALQSAKSDKEELDRGARRLEEDTEETsglLEQLRQDLAVKSNQVEHLQQET 827
Cdd:COG4717 139 AELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEE---LQDLAEELEELQQRLAELEEEL 215
|
170
....*....|...
gi 568935679 828 ATLRKQMQKVKEQ 840
Cdd:COG4717 216 EEAQEELEELEEE 228
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
679-896 |
4.65e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.44 E-value: 4.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 679 QLQKVADAAASLEQQLEQVKLTLFQRDQQLAALQQEHLDVIKQLTSTQEALQAKGQSLDDLHTRYDELQARLEELQREAD 758
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 759 SREDAIHFLQnekivlevALQSAKSDKEELDRGA--RRLEEDTEETSGLLEQLRQDLAVKSNQVEHLQQETATLRKQMQK 836
Cdd:COG3883 97 RSGGSVSYLD--------VLLGSESFSDFLDRLSalSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEA 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 837 VKEQFVQQKvmveayrrdaTSKDQLINELKATKKRLDSEMKELRQELIKLQGEKKTVEVE 896
Cdd:COG3883 169 AKAELEAQQ----------AEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAA 218
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1170-1329 |
4.78e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.37 E-value: 4.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1170 VQALQVSLEKEKMEVNSLKEQMAAARIEAGHNRRHFKAATLELSEVKKELQAKEHLVQTLQA--EVDELQIQDGKHSQEI 1247
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEAriKKYEEQLGNVRNNKEY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1248 AQFQTELAEARTQLQLLQKKLDEQMSQQPTGSQEMEDLKWELDQKEREIQSLKQQLDLTEQQGKKELEGTQQTLQTIKSE 1327
Cdd:COG1579 92 EALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAK 171
|
..
gi 568935679 1328 LE 1329
Cdd:COG1579 172 IP 173
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
788-1081 |
5.82e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 44.12 E-value: 5.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 788 LDRGARRLEEDTEETSGLLEQLRQDLAVKSNQVEHLQQETATLRKQMQKVKEQFVQQKVMVEAYRRDATSKDQLINELKA 867
Cdd:COG4372 29 LSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 868 TKKRLDSEMKELRQELIKLQGEKKTVEVEHSRLQKDMSLVHQQMAELEGHLQSVQKERDEMEIHLQSLKfdkeqmiaLTE 947
Cdd:COG4372 109 EAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALS--------EAE 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 948 ANETLKKQIEELQQEAKKAITEQKQKMKRLGSDLSSAQKEMKTKHKAYENAVSILSRRLQEALASKEATDAELNQLRAQS 1027
Cdd:COG4372 181 AEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEI 260
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 568935679 1028 TGGSSDPVLHEKIRALEVELQNVGQSKILLEKELQEVITMTSQELEESREKVLE 1081
Cdd:COG4372 261 EELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALE 314
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
628-803 |
6.24e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.00 E-value: 6.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 628 IKEKERIAVQLQS---IEADMLDQEAafvqIREAKtmveEDLQRRLEEFEGE-REQLQKVADaaasLEQQLEQVKLTLFQ 703
Cdd:PRK12704 33 IKEAEEEAKRILEeakKEAEAIKKEA----LLEAK----EEIHKLRNEFEKElRERRNELQK----LEKRLLQKEENLDR 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 704 RDQQLAALQQEHLDVIKQLTSTQEALQAKGQSLDDLHTrydELQARLEELQreADSREDAihflqnEKIVLEVALQSAKS 783
Cdd:PRK12704 101 KLELLEKREEELEKKEKELEQKQQELEKKEEELEELIE---EQLQELERIS--GLTAEEA------KEILLEKVEEEARH 169
|
170 180
....*....|....*....|
gi 568935679 784 DKEELdrgARRLEEDTEETS 803
Cdd:PRK12704 170 EAAVL---IKEIEEEAKEEA 186
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
742-1026 |
6.65e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.34 E-value: 6.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 742 RYDELQARLEELQ--READSREDAIHFLQNEKIVLEvalqsaksDKEELDRgaRRLEEDTEEtsglLEQLRQ-DLAVKSN 818
Cdd:pfam17380 310 REVERRRKLEEAEkaRQAEMDRQAAIYAEQERMAME--------RERELER--IRQEERKRE----LERIRQeEIAMEIS 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 819 QVEHLQQetatLRKQMQKVKEQFVQQKVMVEAYRRDATSKDQLINELKATKKRLDSEMKELRQELIKLQGEKKTVEVEHS 898
Cdd:pfam17380 376 RMRELER----LQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERV 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 899 RLQkdmslvhqqmaELEGHLQSVQKERDEMEIHLQSLKFDKEQMiALTEANETLKKQIEELQQEAKKAITEQKQKMKRLg 978
Cdd:pfam17380 452 RLE-----------EQERQQQVERLRQQEEERKRKKLELEKEKR-DRKRAEEQRRKILEKELEERKQAMIEEERKRKLL- 518
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 568935679 979 sdlssaQKEMKTKHKA-YENAvsilSRRLQEALASKEATDAELNQLRAQ 1026
Cdd:pfam17380 519 ------EKEMEERQKAiYEEE----RRREAEEERRKQQEMEERRRIQEQ 557
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
389-520 |
6.85e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 43.80 E-value: 6.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 389 SVSMESSLAEPQDELLQILKDKRRLEGQVEALSLEASQALQEKAELQAQLAA---LSTRLQAQVEhshssqqkqdSLSSE 465
Cdd:PRK09039 76 NQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSekqVSARALAQVE----------LLNQQ 145
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 568935679 466 VDTLKQSCWDLERAMTDLQSMLEAKNASLASSNNDLQVAeeqyqrLMAKVEDMQR 520
Cdd:PRK09039 146 IAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA------LAQRVQELNR 194
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
1054-1329 |
8.49e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 43.79 E-value: 8.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1054 KILLEKELQEVITMTSQELEESREKVLELEDELQES--RGFRRKIKRLEESNKKLALELEHERGKLTGLGQSNAALREHN 1131
Cdd:COG5185 233 EALKGFQDPESELEDLAQTSDKLEKLVEQNTDLRLEklGENAESSKRLNENANNLIKQFENTKEKIAEYTKSIDIKKATE 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1132 SILE-TALAKREADLVQLNLQVQAVLQRKEEEdrqMKQLVQALQVSLEKEKMEVNSLKEQMAAARIEAghnrrHFKAATL 1210
Cdd:COG5185 313 SLEEqLAAAEAEQELEESKRETETGIQNLTAE---IEQGQESLTENLEAIKEEIENIVGEVELSKSSE-----ELDSFKD 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1211 ELSEVKKEL-QAKEHLVQTLQAEVDELQIQDGKHSQEIAQFQTELAEARTQLQLLQKKLDE-----QMSQQPTGSQEMED 1284
Cdd:COG5185 385 TIESTKESLdEIPQNQRGYAQEILATLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLNEliselNKVMREADEESQSR 464
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 568935679 1285 LKWELDQKEREIQSLKQQLDLTEQQGKKELEGTQQTLQTIKSELE 1329
Cdd:COG5185 465 LEEAYDEINRSVRSKKEDLNEELTQIESRVSTLKATLEKLRAKLE 509
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1210-1356 |
9.50e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.60 E-value: 9.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1210 LELSEVKKELQAKEHLVQTLQAEVDELQIQDGKHSQEIAQFQTELAEARTQLQLLQKKL---------DEQMSQQPTGSQ 1280
Cdd:COG1579 10 LDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIeevearikkYEEQLGNVRNNK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1281 EMEDLKWELDQKEREIQSL-KQQLDLTEQQGKKE---------LEGTQQTLQTIKSELEmvqEDLSETQKDKFMLQAKVS 1350
Cdd:COG1579 90 EYEALQKEIESLKRRISDLeDEILELMERIEELEeelaeleaeLAELEAELEEKKAELD---EELAELEAELEELEAERE 166
|
....*.
gi 568935679 1351 ELKNNM 1356
Cdd:COG1579 167 ELAAKI 172
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
374-965 |
1.07e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.51 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 374 EANGEVRSRRDSICSSVSMESSLAEPQDELLQILKDKRRLEGQVEALSLEASQALQEKAELQAqLAALSTRLQAQVEhsh 453
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE-LKEEIEELEKELE--- 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 454 ssqqkqdSLSSEVDTLKQSCWDLERAMTDLQSMLEaKNASLASSNNDLQVAEEQYQRL---MAKVEDMQRNILSKDNTVH 530
Cdd:PRK03918 249 -------SLEGSKRKLEEKIRELEERIEELKKEIE-ELEEKVKELKELKEKAEEYIKLsefYEEYLDELREIEKRLSRLE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 531 DLRQQMTALQSQLQQVQLERTTLTSKLQASQAEITSLQHARQWYQQQLTLAQEARvRLQGEMAHIQVgqmtqagllEHLK 610
Cdd:PRK03918 321 EEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELE-RLKKRLTGLTP---------EKLE 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 611 LENVSLSHQLTETQHRSIKEKERIAvQLQSIEADMldqEAAFVQIREAKT--------MVEEDLQRRLEEFEGEREQLQK 682
Cdd:PRK03918 391 KELEELEKAKEEIEEEISKITARIG-ELKKEIKEL---KKAIEELKKAKGkcpvcgreLTEEHRKELLEEYTAELKRIEK 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 683 VADAAASLEQQL--EQVKLTLFQRDQQLAALQQEHLDVIKQLTS-----TQEALQAKGQSLDDLHTRYDELQARLEELQR 755
Cdd:PRK03918 467 ELKEIEEKERKLrkELRELEKVLKKESELIKLKELAEQLKELEEklkkyNLEELEKKAEEYEKLKEKLIKLKGEIKSLKK 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 756 EADSREDaihfLQNEKIVLEVALQSAKSDKEELDRGARRLE-EDTEETSGLLEQLrqdlavksnqvEHLQQETATLRKQM 834
Cdd:PRK03918 547 ELEKLEE----LKKKLAELEKKLDELEEELAELLKELEELGfESVEELEERLKEL-----------EPFYNEYLELKDAE 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 835 QKVKEQFVQQKvmveayrRDATSKDQLINELKATKKRLdsemKELRQELIKLqgEKKTVEVEHSRLQKDMSLVHQQMAEL 914
Cdd:PRK03918 612 KELEREEKELK-------KLEEELDKAFEELAETEKRL----EELRKELEEL--EKKYSEEEYEELREEYLELSRELAGL 678
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 568935679 915 EGHLQSVQKERDEMEIHLQSLKFDKEQMIALTEANETLKKQIEELQQEAKK 965
Cdd:PRK03918 679 RAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREK 729
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
615-905 |
1.19e-03 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 43.48 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 615 SLSHQLTETQHRSIKEK---ERIAVQLQSieADMLDQEAAFVQIREAktmveEDLQRRLEEFEGEREqlqkvADAAASLE 691
Cdd:pfam05667 230 GLASRLTPEEYRKRKRTkllKRIAEQLRS--AALAGTEATSGASRSA-----QDLAELLSSFSGSST-----TDTGLTKG 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 692 QQLEQVKLTLFQRDQQLAAlqqehlDVIKQLTSTQEALQAKGQ-SLDDLHTRYDELQARLEELQREADSredaihflqne 770
Cdd:pfam05667 298 SRFTHTEKLQFTNEAPAAT------SSPPTKVETEEELQQQREeELEELQEQLEDLESSIQELEKEIKK----------- 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 771 kivLEVALQSAKSDKEELDRGARRLEEDTEETSGLLEQLRQDlavkSNQVEHLQQETATLRKQMQKVKEQFVQQKV-MVE 849
Cdd:pfam05667 361 ---LESSIKQVEEELEELKEQNEELEKQYKVKKKTLDLLPDA----EENIAKLQALVDASAQRLVELAGQWEKHRVpLIE 433
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 568935679 850 AYRRDATSKDQLINE--LKATK-KRLDSEMKELRQELIKLQGEKKTVEVEHSRLQKDMS 905
Cdd:pfam05667 434 EYRALKEAKSNKEDEsqRKLEEiKELREKIKEVAEEAKQKEELYKQLVAEYERLPKDVS 492
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1132-1321 |
1.35e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 43.36 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1132 SILETALAKREADLVQLN-LQVQ-AVLQRKEEEDRQMKQLVQALQVSL------EKEKMEVNSLKEQMAAArieaghnrr 1203
Cdd:PRK11281 22 LSSAFARAASNGDLPTEAdVQAQlDALNKQKLLEAEDKLVQQDLEQTLalldkiDRQKEETEQLKQQLAQA--------- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1204 hfkaaTLELSEVKKELQAkehlvqtLQAEVDELQIQDGKhSQEIAQFQTELAEARTQLQLLQKKLDEQMSQQPTGSQEME 1283
Cdd:PRK11281 93 -----PAKLRQAQAELEA-------LKDDNDEETRETLS-TLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPE 159
|
170 180 190
....*....|....*....|....*....|....*...
gi 568935679 1284 DLKWELDQKEREIQSLKQQLDlTEQQGKKELEGTQQTL 1321
Cdd:PRK11281 160 RAQAALYANSQRLQQIRNLLK-GGKVGGKALRPSQRVL 196
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
923-1358 |
1.41e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 1.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 923 KERDEMEIHLQSLKFDKEQMIALTEANETLKKQIEELQQEaKKAITEQKQKMKRLGSDLSSAQKEMKTKHKayenaVSIL 1002
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAE-LEELREELEKLEKLLQLLPLYQELEALEAE-----LAEL 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1003 SRRLQEALASKEATDAELNQLRAQSTggssdpVLHEKIRALEVELQNVGQSKILLEKELQEVITMTSQELEESREKVLEL 1082
Cdd:COG4717 145 PERLEELEERLEELRELEEELEELEA------ELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEA 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1083 EDELQESRgfrRKIKRLEESNKKLALELEHERGKLTGLGQSNAALREHNSILETALAKREADLVQLNLQVQAVL-QRKEE 1161
Cdd:COG4717 219 QEELEELE---EELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLfLLLAR 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1162 EDRQMKQLVQALQVSLEKEKMEVNSLKEQMAAARIEAGHNRRHFKAATLELSEVKKELQAKEHLVQTLQAEVDELQIQdg 1241
Cdd:COG4717 296 EKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIA-- 373
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1242 khsqeiAQFQTELAEARTQLQLLQKKLDEQMSQQptgsQEMEDLKWELDQKEREIQSLKQQLDLTEqqgkkelegtqqtl 1321
Cdd:COG4717 374 ------ALLAEAGVEDEEELRAALEQAEEYQELK----EELEELEEQLEELLGELEELLEALDEEE-------------- 429
|
410 420 430
....*....|....*....|....*....|....*..
gi 568935679 1322 qtIKSELEMVQEDLSETQKDKFMLQAKVSELKNNMKT 1358
Cdd:COG4717 430 --LEEELEELEEELEELEEELEELREELAELEAELEQ 464
|
|
| AAA_13 |
pfam13166 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
877-1285 |
1.53e-03 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.
Pssm-ID: 463796 [Multi-domain] Cd Length: 712 Bit Score: 43.13 E-value: 1.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 877 KELRQELIKLQGEKKTVEVehsrLQKDMSLVHQQMAELEGHLQSVQKERDEMEIHLQSLKFDKEQmiALTEANETLKKQI 956
Cdd:pfam13166 68 RDFVEENLSEQGEIKPIFT----LGEESIEIQEKIAKLKKEIKDHEEKLDAAEANLQKLDKEKEK--LEADFLDECWKKI 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 957 eelqqeAKKAITEQKQKMKRLGSDLSSAQKEMKTKHKAYENAVSILSRRLQEA------------LASKEATDAELNQLR 1024
Cdd:pfam13166 142 ------KRKKNSALSEALNGFKYEANFKSRLLREIEKDNFNAGVLLSDEDRKAalatvfsdnkpeIAPLTFNVIDFDALE 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1025 AQSTGGSSDPVLHEKIRALEVELQN---VGQSkILLEKELQEVITMTSQELEESREKvlELEDELQESrgFRRKIKRLEE 1101
Cdd:pfam13166 216 KAEILIQKVIGKSSAIEELIKNPDLadwVEQG-LELHKAHLDTCPFCGQPLPAERKA--ALEAHFDDE--FTEFQNRLQK 290
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1102 SNKKLALELEHERGKLTGLgqsnAALREHNSILETALAKREADLVQLNLQVQAVLQRKEEEDRQMKQLVQALQVSLEKEK 1181
Cdd:pfam13166 291 LIEKVESAISSLLAQLPAV----SDLASLLSAFELDVEDIESEAEVLNSQLDGLRRALEAKRKDPFKSIELDSVDAKIES 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1182 M--EVNSLKEQMAAarieagHNRR--HFKAATlelSEVKKELQAkeHLVQTLQAEVDELQIQDGKHSQEIAQFQTELAEA 1257
Cdd:pfam13166 367 IndLVASINELIAK------HNEItdNFEEEK---NKAKKKLRL--HLVEEFKSEIDEYKDKYAGLEKAINSLEKEIKNL 435
|
410 420 430
....*....|....*....|....*....|.
gi 568935679 1258 RTQLQLLQKK---LDEQMSQQPTGSQEMEDL 1285
Cdd:pfam13166 436 EAEIKKLREEikeLEAQLRDHKPGADEINKL 466
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1168-1309 |
1.62e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 42.58 E-value: 1.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1168 QLVQALQVSLEKEKMEVNSLKEQMAAARIEAGHNRRHFKAATLELSEVKKELQAKEHLVQTLQAEVDELQIQDGKHSQEI 1247
Cdd:COG4372 24 ILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEEL 103
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568935679 1248 AQFQTELAEARTQLQLLQKKLDEQMSQQPTGSQEMEDLKWELDQKEREIQSLKQQLDLTEQQ 1309
Cdd:COG4372 104 ESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEE 165
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
819-981 |
1.68e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.83 E-value: 1.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 819 QVEHLQQETATLRKQMQKVKEQFVQQKVMVEAYRRDATSKDQLINELKATKKRLDSEMKELRQELIKLQGEKKTV--EVE 896
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVrnNKE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 897 HSRLQKDMSLVHQQMAELEGHLQSVQKERDEMEIHLQSLKFDKEQMIA-LTEANETLKKQIEELQQEAKKAITEQKQKMK 975
Cdd:COG1579 91 YEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAeLEEKKAELDEELAELEAELEELEAEREELAA 170
|
....*.
gi 568935679 976 RLGSDL 981
Cdd:COG1579 171 KIPPEL 176
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1077-1379 |
1.87e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.04 E-value: 1.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1077 EKVLELEDELQESRGFRRKIKRLEE-------SNKKLALELEHERGKLTGLGQSNAALREHNSILETALAKREADLVQLN 1149
Cdd:pfam02463 153 ERRLEIEEEAAGSRLKRKKKEALKKlieetenLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYL 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1150 LQVQAVLQRKEEEDRQMKQLVQALQVSLEKEKMEVNSLKEQMAAARIEAGHNRRHFKAATLELSEVKKELQAKEHLVQTL 1229
Cdd:pfam02463 233 KLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDD 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1230 QAEVDELQIQDGKHS-------QEIAQFQTELAEARTQLQLLQKKLDEQMSQQPTGSQEMEDLKWELDQKEREIQS---- 1298
Cdd:pfam02463 313 EEKLKESEKEKKKAEkelkkekEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSaakl 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1299 ---LKQQLDLTEQQGKKELEGTQQTLQTIKSELEMVQEDLSETQKDKFMLQAKVSELKNNMKTLLQQNQQLKLDLRRGAA 1375
Cdd:pfam02463 393 keeELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSED 472
|
....
gi 568935679 1376 KKKE 1379
Cdd:pfam02463 473 LLKE 476
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
678-896 |
1.93e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 42.69 E-value: 1.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 678 EQLQKVADAAASLEQQLEQVKLTLFQRDQQLAALQQEHLDVIKQLTSTQEalqakgqsldDLHTRYDELQARLEELQREA 757
Cdd:PHA02562 181 QQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAK----------TIKAEIEELTDELLNLVMDI 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 758 DSREDAIHFLQNEKIVLEVALQSAKSD-------------KEELDRGARRLEEDTEETSGLLEQLRqDLAVKSNQVEHLQ 824
Cdd:PHA02562 251 EDPSAALNKLNTAAAKIKSKIEQFQKVikmyekggvcptcTQQISEGPDRITKIKDKLKELQHSLE-KLDTAIDELEEIM 329
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568935679 825 QETATLRKQMQKVKEQFVQQKVMVEAYRRDATSKDQLINELKATKKRLDSEMKELRQELIKLQGEKKTVEVE 896
Cdd:PHA02562 330 DEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE 401
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
412-597 |
1.99e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 1.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 412 RLEGQVEALSLEASQALQEKAELQAQLAALSTRLQAQVEHSHSSQQKQDSLSSEVDTLKQSCW--DLERAMTDLQSMLEA 489
Cdd:COG3206 202 RQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPViqQLRAQLAELEAELAE 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 490 KNASLASSNNDLQVAEEQYQRLMAKVEDMQRNILSkdntvhDLRQQMTALQSQLQQVQLERTTLTSKLQ---ASQAEITS 566
Cdd:COG3206 282 LSARYTPNHPDVIALRAQIAALRAQLQQEAQRILA------SLEAELEALQAREASLQAQLAQLEARLAelpELEAELRR 355
|
170 180 190
....*....|....*....|....*....|....*
gi 568935679 567 LQH----ARQWYQQQLTLAQEARVRLQGEMAHIQV 597
Cdd:COG3206 356 LERevevARELYESLLQRLEEARLAEALTVGNVRV 390
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
677-999 |
2.14e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 42.58 E-value: 2.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 677 REQLQKVADAAASLEQQLEQVKltlfqRDQQLAALQQEhlDVIKQLTSTQEAL----QAKGQSLDDLHTRYDELQArlee 752
Cdd:PLN02939 99 RASMQRDEAIAAIDNEQQTNSK-----DGEQLSDFQLE--DLVGMIQNAEKNIlllnQARLQALEDLEKILTEKEA---- 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 753 LQREADsredaihflqnekiVLEVALqsakSDKEELDRGARRLEEDTEETSGLLEQLRQDLAVKSnqvEHLQQETATLRK 832
Cdd:PLN02939 168 LQGKIN--------------ILEMRL----SETDARIKLAAQEKIHVEILEEQLEKLRNELLIRG---ATEGLCVHSLSK 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 833 QMQKVKEQFVQQKvmveayrrdatskdqliNELKATKKRLdSEMKELRQELIKLQGEKKTVEVEHSRLQKDMSLVHQQMA 912
Cdd:PLN02939 227 ELDVLKEENMLLK-----------------DDIQFLKAEL-IEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVS 288
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 913 ELEGHLQSVQKER-DEMEIHLQSLKFDKEQMIALTEANETLKKQIEELQQEAKKAITEQ---------KQKMKRLGSDLS 982
Cdd:PLN02939 289 KLSPLQYDCWWEKvENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKfssykvellQQKLKLLEERLQ 368
|
330
....*....|....*..
gi 568935679 983 SAQKEMKTKHKAYENAV 999
Cdd:PLN02939 369 ASDHEIHSYIQLYQESI 385
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
606-926 |
2.16e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 42.20 E-value: 2.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 606 LEHLKLENVSLSHQLTETQHRSIKEKERIAVQLQSIEADMLDQEAAFVQIREAKTMVEEDLQRRLEEFEGEREQLQKVAD 685
Cdd:COG4372 15 LFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 686 AAASLEQQLEQVKLTLFQRDQQLAALQQEHLDVIKQLTSTQEALQAKGQSLDDLHTRYDELQARLEELQREADSREDAIH 765
Cdd:COG4372 95 ELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQ 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 766 FLQNEKIVLEVALQSAKSDKEELDRGARRLEEDTEETSGLLEQLRQDLAVKSNQVEHLQQETATLRK-QMQKVKEQFVQQ 844
Cdd:COG4372 175 ALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDAlELEEDKEELLEE 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 845 KVMVEAYRRDATSKDQLINELKATKKRLDSEMKELRQELIKLQGEKKTVEVEHSRLQKDMSLVHQQMAELEGHLQSVQKE 924
Cdd:COG4372 255 VILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAI 334
|
..
gi 568935679 925 RD 926
Cdd:COG4372 335 LL 336
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
830-1033 |
2.44e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 2.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 830 LRKQMQKVKEQFVQQKVMVEAYRRDatskdQLINELKATKKRLDSEMKELRQELIKLQGEKKTVEVEHSRLQKDMSLVHQ 909
Cdd:COG3206 180 LEEQLPELRKELEEAEAALEEFRQK-----NGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPD 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 910 QMAELEGH--LQSVQKERDEMEIHLQSL--KFDKE--QMIALTEANETLKKQIEELQQEAKKAITEQKQKMKRLGSDLSS 983
Cdd:COG3206 255 ALPELLQSpvIQQLRAQLAELEAELAELsaRYTPNhpDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQA 334
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 568935679 984 AQKEMKTKHKAY---ENAVSILSRRLQEALASKEATDAELNQLRAQSTGGSSD 1033
Cdd:COG3206 335 QLAQLEARLAELpelEAELRRLEREVEVARELYESLLQRLEEARLAEALTVGN 387
|
|
| HMMR_N |
pfam15905 |
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ... |
1074-1334 |
2.68e-03 |
|
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464932 [Multi-domain] Cd Length: 329 Bit Score: 41.72 E-value: 2.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1074 ESREKVLELEDELQESRGFRRKIKRLEESNKKLALE----------LEHERGKLTGlgQSNAALREHNSILE--TALAKR 1141
Cdd:pfam15905 53 ARKVKSLELKKKSQKNLKESKDQKELEKEIRALVQErgeqdkrlqaLEEELEKVEA--KLNAAVREKTSLSAsvASLEKQ 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1142 EADLVQLNlqvqAVLQRKEEEDRQMKQL------VQALQVSLEKEKMEVNSLKEQMAAARIEAGHNRRHFKA--ATLE-- 1211
Cdd:pfam15905 131 LLELTRVN----ELLKAKFSEDGTQKKMsslsmeLMKLRNKLEAKMKEVMAKQEGMEGKLQVTQKNLEHSKGkvAQLEek 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1212 LSEVKKELQAKEHLVQTLQAEVDELQI---QDGKHSQEIAQFQTELAEARTQLQLLQKKLDEQMSQQptgSQEMEDLKWE 1288
Cdd:pfam15905 207 LVSTEKEKIEEKSETEKLLEYITELSCvseQVEKYKLDIAQLEELLKEKNDEIESLKQSLEEKEQEL---SKQIKDLNEK 283
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 568935679 1289 LDQKEREIQSLKQQLDLTEQQGKKELEGTQQTLQTIKSELEMVQED 1334
Cdd:pfam15905 284 CKLLESEKEELLREYEEKEQTLNAELEELKEKLTLEEQEHQKLQQK 329
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
818-1142 |
2.94e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.03 E-value: 2.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 818 NQVEHLQQETATLRKQMQKVKEQFVQQKVM---VEAYRRDATSKDQLINELKATKKRLDSEMK----------ELRQELI 884
Cdd:pfam17380 272 NQLLHIVQHQKAVSERQQQEKFEKMEQERLrqeKEEKAREVERRRKLEEAEKARQAEMDRQAAiyaeqermamERERELE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 885 KLQGEKKTVEVEHSRlQKDMSLVHQQMAELEgHLQSVQKERDEMEihLQSLKFDKEQMIALTEANETLKKQIEELQQEAK 964
Cdd:pfam17380 352 RIRQEERKRELERIR-QEEIAMEISRMRELE-RLQMERQQKNERV--RQELEAARKVKILEEERQRKIQQQKVEMEQIRA 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 965 KAITEQKQKMKRLGSDLSSAQKEMKTKHKAYENAVSILsrRLQEALASKEATDAELNQLRAQSTGGSSDPVLHEKIRALE 1044
Cdd:pfam17380 428 EQEEARQREVRRLEEERAREMERVRLEEQERQQQVERL--RQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERK 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1045 VELQNVGQSKILLEKELQEvitmtsqeleesREKVLELEDELQESRGFRRKIKRLEESNK--KLALELEHERGKLTGLGQ 1122
Cdd:pfam17380 506 QAMIEEERKRKLLEKEMEE------------RQKAIYEEERRREAEEERRKQQEMEERRRiqEQMRKATEERSRLEAMER 573
|
330 340
....*....|....*....|
gi 568935679 1123 SNAALREhnsILETALAKRE 1142
Cdd:pfam17380 574 EREMMRQ---IVESEKARAE 590
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1043-1340 |
3.06e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.80 E-value: 3.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1043 LEVELQNVGQSKILLEKELQEVITMTSQELEESREKVLELEDELQEsrgFRRKIKRLEESNKKLALELEHERGKLTGLGQ 1122
Cdd:pfam07888 32 LQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRE---LESRVAELKEELRQSREKHEELEEKYKELSA 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1123 SNAALREHNSILETALAKREADLVQLNLQVQAVLQR---KEEEDRQMKQLVQALQVSLEKEKMEVNSLKEQMAAARIEAG 1199
Cdd:pfam07888 109 SSEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRvleRETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELR 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1200 HNRRHFKAATLELSEVKKELQAKEHLVQTLQAEVDELQIQDGKHSQEIAQF---QTELAEARTQLQLLQKKLDEQMSQQP 1276
Cdd:pfam07888 189 SLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELrslQERLNASERKVEGLGEELSSMAAQRD 268
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568935679 1277 TGSQEMEDLKWELDQKEREIQSLKQQLDLTEQQGKKELEGTQQTLQTIKSELEMVQEDLSETQK 1340
Cdd:pfam07888 269 RTQAELHQARLQAAQLTLQLADASLALREGRARWAQERETLQQSAEADKDRIEKLSAELQRLEE 332
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
705-903 |
3.12e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.74 E-value: 3.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 705 DQQLAALQQEHLDVIKQLTSTQEALQAKGQSLDDLHTRYDELQARLEELQREADSREDAIhflqnekivlEVALQSAKSD 784
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEI----------AEAEAEIEER 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 785 KEELDRGARRLEEdTEETSGLLEQLR-----QDLAVKSNQVEHLQQETATLRKQMQKVKEQFVQQKVMVEAYRRDAtskD 859
Cdd:COG3883 85 REELGERARALYR-SGGSVSYLDVLLgsesfSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAEL---E 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 568935679 860 QLINELKATKKRLDSEMKELRQELIKLQGEKKTVEVEHSRLQKD 903
Cdd:COG3883 161 ALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAE 204
|
|
| KpsE |
COG3524 |
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis]; |
1212-1339 |
3.29e-03 |
|
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442746 [Multi-domain] Cd Length: 370 Bit Score: 41.76 E-value: 3.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1212 LSEVKKELQAKEHLVQTLQAEVDELQIQDG---------KHSQEIAQFQTELAEARTQLQLLQKKLDEQMSQqptgsqem 1282
Cdd:COG3524 179 VRFAEEEVERAEERLRDAREALLAFRNRNGildpeataeALLQLIATLEGQLAELEAELAALRSYLSPNSPQ-------- 250
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568935679 1283 edlkweLDQKEREIQSLKQQLD-----LTEQQGKKELEGTQQTLQTIKSELEMVQEDLSETQ 1339
Cdd:COG3524 251 ------VRQLRRRIAALEKQIAaerarLTGASGGDSLASLLAEYERLELEREFAEKAYTSAL 306
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
575-833 |
3.63e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.82 E-value: 3.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 575 QQQLTLAQEARVRLQGEMAHIQVGQMTQAGL--LEHLKLENVSLSHQLTETQhRSIKEKERIAVQLQSIEADMLDQEAAF 652
Cdd:PRK11281 42 QAQLDALNKQKLLEAEDKLVQQDLEQTLALLdkIDRQKEETEQLKQQLAQAP-AKLRQAQAELEALKDDNDEETRETLST 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 653 VQIREaktmveedLQRRLEEFEGEREQLQKVADAA----ASLEQQLEQVKLTLF---QRDQQLAALQQEHLDVIKQLTST 725
Cdd:PRK11281 121 LSLRQ--------LESRLAQTLDQLQNAQNDLAEYnsqlVSLQTQPERAQAALYansQRLQQIRNLLKGGKVGGKALRPS 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 726 QEA-LQAKGQSLD-----------------DLHT-RYDELQARLEELQREADSREDAIH---FLQNEKIVLEV----ALQ 779
Cdd:PRK11281 193 QRVlLQAEQALLNaqndlqrkslegntqlqDLLQkQRDYLTARIQRLEHQLQLLQEAINskrLTLSEKTVQEAqsqdEAA 272
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 780 SAKSD---KEELDRGAR---RLEEDTEETSGLleqLRQDLAVKsNQVEHLQQETATLRKQ 833
Cdd:PRK11281 273 RIQANplvAQELEINLQlsqRLLKATEKLNTL---TQQNLRVK-NWLDRLTQSERNIKEQ 328
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
401-981 |
3.67e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.96 E-value: 3.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 401 DELLQILKD---KRRLEGQVEALSLEASQALQEKAELQAQLAALSTrLQAQVEHSHSSQQKQDSLSSEVDTLKQSCWDLE 477
Cdd:TIGR00606 560 DELTSLLGYfpnKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQ-NKNHINNELESKEEQLSSYEDKLFDVCGSQDEE 638
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 478 RAMTDLQSMLEAKNASLASSNNDLQVAEEQYQRLMAKVED---MQRNILSKDNTVHDLRQQMTALQSQLQQVQLERTTLT 554
Cdd:TIGR00606 639 SDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSccpVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESEL 718
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 555 SKLQASQAEITSLQHARQ-WYQQQLTLAQEARVRLQG---EMAHIQVGQMTQAGLLEHLKLENVSLSHQLT-----ETQH 625
Cdd:TIGR00606 719 KKKEKRRDEMLGLAPGRQsIIDLKEKEIPELRNKLQKvnrDIQRLKNDIEEQETLLGTIMPEEESAKVCLTdvtimERFQ 798
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 626 RSIKEKERIAVQLQSiEADMLDQEAAFVQIREAKTMVEEDLQRRLEEFEGER---EQLQKVADAAASLEQQLEQVKLTLF 702
Cdd:TIGR00606 799 MELKDVERKIAQQAA-KLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRkliQDQQEQIQHLKSKTNELKSEKLQIG 877
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 703 QRDQQLAALQQEHLDVIKQLTSTQEAL-QAKGQSLDDLHTRYDELQARLEELQREADSREDAIHFLQNEKIVLEVALQSA 781
Cdd:TIGR00606 878 TNLQRRQQFEEQLVELSTEVQSLIREIkDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYM 957
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 782 KSDKEELDRGARRLEEDTEetsglleqlrQDLAVKSNQVEHLQQETATLRKQMQKVKEQFVQQKVMVEAYRRDAT--SKD 859
Cdd:TIGR00606 958 KDIENKIQDGKDDYLKQKE----------TELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTlrKRE 1027
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 860 QLINELKATKKRLDSEMKELR-----QELIKLQGEKKTVEVEHsrlqkdmSLVHQQMAELEGHLQSVQKERDEMEIHLQS 934
Cdd:TIGR00606 1028 NELKEVEEELKQHLKEMGQMQvlqmkQEHQKLEENIDLIKRNH-------VLALGRQKGYEKEIKHFKKELREPQFRDAE 1100
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 568935679 935 LKFdKEQMIALT---EANETLKKQIEELQQEAKKAITEQKQKMKRLGSDL 981
Cdd:TIGR00606 1101 EKY-REMMIVMRtteLVNKDLDIYYKTLDQAIMKFHSMKMEEINKIIRDL 1149
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
679-840 |
4.03e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.68 E-value: 4.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 679 QLQKVADAAASLEQQLEQVKLTLFQRDQQLAALQQEHLDVIKQLTSTQEALQAKGQSLDDLHTRYDELQARLEEL--QRE 756
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVrnNKE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 757 ADSREDAIHFLQNEKIVLEVALQSAKSDKEEldrgarrLEEDTEETSGLLEQLRQDLAVKSNQvehLQQETATLRKQMQK 836
Cdd:COG1579 91 YEALQKEIESLKRRISDLEDEILELMERIEE-------LEEELAELEAELAELEAELEEKKAE---LDEELAELEAELEE 160
|
....
gi 568935679 837 VKEQ 840
Cdd:COG1579 161 LEAE 164
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
988-1239 |
4.77e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 4.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 988 MKTKHKAYENAVSILSRRLQEALASKEATDAELNQLRAQStgGSSDpvlhekiralevelqnvgqskillekeLQEVITM 1067
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKN--GLVD---------------------------LSEEAKL 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1068 TSQELEESREKVLELEDELQESRGFRRKIKRLEESNKKLALELEHErgkltglgQSNAALREHNSILETALAKREADLVQ 1147
Cdd:COG3206 217 LLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQS--------PVIQQLRAQLAELEAELAELSARYTP 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1148 LNLQVQAVLQRKEEEDRQMKQLVQALQVSLEKE----KMEVNSLKEQMAAARIEAghnrRHFKAATLELSEVKKELQAKE 1223
Cdd:COG3206 289 NHPDVIALRAQIAALRAQLQQEAQRILASLEAElealQAREASLQAQLAQLEARL----AELPELEAELRRLEREVEVAR 364
|
250
....*....|....*.
gi 568935679 1224 HLVQTLQAEVDELQIQ 1239
Cdd:COG3206 365 ELYESLLQRLEEARLA 380
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
774-910 |
4.98e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.38 E-value: 4.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 774 LEVALQSAKSDKEELDRGARRLEEDTEETSglLEQLRQDLAVKSNQVEHLQQETATLRKQMQKVKEQfvqqkvmVEAYRR 853
Cdd:COG2433 378 IEEALEELIEKELPEEEPEAEREKEHEERE--LTEEEEEIRRLEEQVERLEAEVEELEAELEEKDER-------IERLER 448
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 854 DATS-KDQLINELKATKK--RLDSEMKELRQELIKLQGEKKTVEVEHSRLQKDMSLVHQQ 910
Cdd:COG2433 449 ELSEaRSEERREIRKDREisRLDREIERLERELEEERERIEELKRKLERLKELWKLEHSG 508
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
393-732 |
5.50e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.44 E-value: 5.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 393 ESSLAEPQDELLQ--------ILKDKRRLEGQVEALSLEASQALQEKAELQAQLAALSTRLQAQVEHSHSSQqkqdslss 464
Cdd:PRK11281 50 KQKLLEAEDKLVQqdleqtlaLLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTL-------- 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 465 evdTLKQscwdLERAMTDLQSMLEAKNASLASSNNDLQVAEEQYQR----LMAKVEDMQ--RNILSKDNT-----VHDLR 533
Cdd:PRK11281 122 ---SLRQ----LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERaqaaLYANSQRLQqiRNLLKGGKVggkalRPSQR 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 534 QQMTALQSQLQQVQLERTTLT---SKLQA---SQAEITSLQHARQwyQQQLTLAQEA--RVRL------------QGEMA 593
Cdd:PRK11281 195 VLLQAEQALLNAQNDLQRKSLegnTQLQDllqKQRDYLTARIQRL--EHQLQLLQEAinSKRLtlsektvqeaqsQDEAA 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 594 HIQVGQMTQAGLLEHLKL---------ENVSLSHQ----------LTETQhRSIKEKerIAV-------------QLQSI 641
Cdd:PRK11281 273 RIQANPLVAQELEINLQLsqrllkateKLNTLTQQnlrvknwldrLTQSE-RNIKEQ--ISVlkgslllsrilyqQQQAL 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 642 EADMLDQEAAfVQIreaktmveEDLqrRLEEFE--GEREQLQKVADAAASLEQQlEQVKLTLFQRDQ--QLAALQQEHLD 717
Cdd:PRK11281 350 PSADLIEGLA-DRI--------ADL--RLEQFEinQQRDALFQPDAYIDKLEAG-HKSEVTDEVRDAllQLLDERRELLD 417
|
410 420 430
....*....|....*....|....*....|...
gi 568935679 718 VI------------------KQLTSTQEALQAK 732
Cdd:PRK11281 418 QLnkqlnnqlnlainlqlnqQQLLSVSDSLQST 450
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
870-1199 |
5.58e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 41.10 E-value: 5.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 870 KRLDSEMKELRQELIKLQGEK-KTVEVEHSRLQKDMSLVHQQMAELEGHLQSVQKERDEmeIHLQSLKFDKEQMIALTEA 948
Cdd:COG5185 206 SIKESETGNLGSESTLLEKAKeIINIEEALKGFQDPESELEDLAQTSDKLEKLVEQNTD--LRLEKLGENAESSKRLNEN 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 949 NETLKKQIEEL---------QQEAKKAITEQKQKMKRLGSDLSSAQKEMKTKHKAY------ENAVSILSRRLQEALASK 1013
Cdd:COG5185 284 ANNLIKQFENTkekiaeytkSIDIKKATESLEEQLAAAEAEQELEESKRETETGIQnltaeiEQGQESLTENLEAIKEEI 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1014 EATDAELNQLRAQSTGGSSDPVLHEKIRALEVELQNVGQSKILLEKELQEVITMTSQELEESREKVLELEDELQESrgfr 1093
Cdd:COG5185 364 ENIVGEVELSKSSEELDSFKDTIESTKESLDEIPQNQRGYAQEILATLEDTLKAADRQIEELQRQIEQATSSNEEV---- 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1094 rkikrleeSNKKLALELEHERGKLTGLGQSNAALREHNSILETALAKREADlvqLNLQVQAVLQRKEEEDRQMKQLVQAL 1173
Cdd:COG5185 440 --------SKLLNELISELNKVMREADEESQSRLEEAYDEINRSVRSKKED---LNEELTQIESRVSTLKATLEKLRAKL 508
|
330 340
....*....|....*....|....*.
gi 568935679 1174 QVSLEKEKMEVNSLKEQMAAARIEAG 1199
Cdd:COG5185 509 ERQLEGVRSKLDQVAESLKDFMRARG 534
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
1210-1313 |
5.59e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.22 E-value: 5.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1210 LELSEVKKELQAKEHLVQTLQAEVDELQI-QDGKHSQEIAQFQTELAEARTQLQLLQKKLDEQMSQqptgSQEMEDLKWE 1288
Cdd:COG0542 404 MEIDSKPEELDELERRLEQLEIEKEALKKeQDEASFERLAELRDELAELEEELEALKARWEAEKEL----IEEIQELKEE 479
|
90 100
....*....|....*....|....*
gi 568935679 1289 LDQKEREIQSLKQQLDLTEQQGKKE 1313
Cdd:COG0542 480 LEQRYGKIPELEKELAELEEELAEL 504
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1206-1392 |
5.82e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.97 E-value: 5.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1206 KAATLELSEVKKELQAKEHLVQTLQAEVDELQIQDGKHSQEIAQFQTELAEARTQLQLLQKKLDEQMSQQPT-------- 1277
Cdd:COG3883 26 SELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRsggsvsyl 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1278 ----GSQEMEDLKWELDQKEREIQSLKQQLDLTEQQgKKELEGTQQTLQTIKSELEMVQEDLSETQKDkfmLQAKVSELK 1353
Cdd:COG3883 106 dvllGSESFSDFLDRLSALSKIADADADLLEELKAD-KAELEAKKAELEAKLAELEALKAELEAAKAE---LEAQQAEQE 181
|
170 180 190
....*....|....*....|....*....|....*....
gi 568935679 1354 NNMKTLLQQNQQLKLDLRRGAAKKKEPKGESNSSSPATP 1392
Cdd:COG3883 182 ALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAA 220
|
|
| WEMBL |
pfam05701 |
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ... |
910-1351 |
6.41e-03 |
|
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".
Pssm-ID: 461718 [Multi-domain] Cd Length: 562 Bit Score: 40.78 E-value: 6.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 910 QMAELEghLQSVQKERDEMEIHLQSLKFDKEQMIaltEANETLKKQIEELQQEAKKAITEQKQKMKrlgsDLSSAQKEMK 989
Cdd:pfam05701 38 KLVELE--LEKVQEEIPEYKKQSEAAEAAKAQVL---EELESTKRLIEELKLNLERAQTEEAQAKQ----DSELAKLRVE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 990 TKHKAYENAVSILSR--------RLQEALASKEATDAELNQLRAQStggssDPVLHEKIRALEVELQNVGQSKiLLEKEL 1061
Cdd:pfam05701 109 EMEQGIADEASVAAKaqlevakaRHAAAVAELKSVKEELESLRKEY-----ASLVSERDIAIKRAEEAVSASK-EIEKTV 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1062 QEvITMTSQELEESREKVLELEDELQESRgfRRKIKRLEESNKKLALELEHERGKLTGLGQSNAALREHNSILETALAKR 1141
Cdd:pfam05701 183 EE-LTIELIATKESLESAHAAHLEAEEHR--IGAALAREQDKLNWEKELKQAEEELQRLNQQLLSAKDLKSKLETASALL 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1142 EADLVQLNLQVQAVLQRKEEEDRQMKQLVQALQVSLEKEKMEVNSLKEQMAAARIEAghNRRHFKAATLElSEVKKElqa 1221
Cdd:pfam05701 260 LDLKAELAAYMESKLKEEADGEGNEKKTSTSIQAALASAKKELEEVKANIEKAKDEV--NCLRVAAASLR-SELEKE--- 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1222 kehlvqtlQAEVDELQIQDGKHSQEIAQFQTELAEARTQLQLLQKKLDEqmsqqptGSQEMEDLKWELDQKEREIQSLKQ 1301
Cdd:pfam05701 334 --------KAELASLRQREGMASIAVSSLEAELNRTKSEIALVQAKEKE-------AREKMVELPKQLQQAAQEAEEAKS 398
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 568935679 1302 QLDLTEQQ---GKKELEGTQQTLQTIKSELEMVQedlsetqkdKFMLQAKVSE 1351
Cdd:pfam05701 399 LAQAAREElrkAKEEAEQAKAAASTVESRLEAVL---------KEIEAAKASE 442
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
393-593 |
6.45e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.58 E-value: 6.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 393 ESSLAEPQDELLQILKDKRRLEGQVEALSLEASQALQEKAELQAQLAALSTRL----------QAQVEHSHSSQQKQDSL 462
Cdd:COG3883 22 QKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIaeaeaeieerREELGERARALYRSGGS 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 463 SSEVDTLK--QSCWDLERAMTDLQSMLEAKNASLASSNNDLQVAEEQYQRLMAKVEDMQRNILSKDNTVHDLRQQMTALQ 540
Cdd:COG3883 102 VSYLDVLLgsESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQE 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 568935679 541 SQLQQVQLERTTLTSKLQASQAEITSLQHARQWYQQQLTLAQEARVRLQGEMA 593
Cdd:COG3883 182 ALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAA 234
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
677-1027 |
6.51e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.05 E-value: 6.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 677 REQLQKVADAAASLEQQLEQVKLTLfqrdQQLaalqQEHLDVIKQLTSTQEALQAKGQSLDDLHTRYDELQARLEELQRE 756
Cdd:PRK11281 38 EADVQAQLDALNKQKLLEAEDKLVQ----QDL----EQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDD 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 757 ADSredaihflqnekivlevalqsakSDKEELD-RGARRLEEDTEETSGLLEQLRQDLAVKSNQVehlqqetATLRKQMQ 835
Cdd:PRK11281 110 NDE-----------------------ETRETLStLSLRQLESRLAQTLDQLQNAQNDLAEYNSQL-------VSLQTQPE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 836 KVkeqfvqQKVMVEAYRRdatsKDQLINELKATKkrldSEMKELRQELI-KLQGEKKTVEvehsrLQKDmslvhQQMAEL 914
Cdd:PRK11281 160 RA------QAALYANSQR----LQQIRNLLKGGK----VGGKALRPSQRvLLQAEQALLN-----AQND-----LQRKSL 215
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 915 EGH--LQSV-QKERDEMEIHLQSLkfdkEQMIAL--TEANEtlkKQIEELQQEAKKAITeQKQKMKRLGSDLssAQKEMK 989
Cdd:PRK11281 216 EGNtqLQDLlQKQRDYLTARIQRL----EHQLQLlqEAINS---KRLTLSEKTVQEAQS-QDEAARIQANPL--VAQELE 285
|
330 340 350
....*....|....*....|....*....|....*...
gi 568935679 990 TKHKayenavsiLSRRLQealaskEATDaELNQLRAQS 1027
Cdd:PRK11281 286 INLQ--------LSQRLL------KATE-KLNTLTQQN 308
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
756-972 |
6.68e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.58 E-value: 6.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 756 EADSREDAIHFLQNEKIVLEVALQSAKSDKEELDRGARRLEEDTEETSGLLEQLRQDLAVKSNQVEHLQQETATLRKQMQ 835
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 836 KVKEQFVQQKVM------------VEAYRRDATSKDQLINELKATKKRLDSEMKELRQELIKLQGEKKTVEVEHSRLQkd 903
Cdd:COG3883 97 RSGGSVSYLDVLlgsesfsdfldrLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELE-- 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568935679 904 mslvhQQMAELEGHLQSVQKERDEMEIHLQSLKFDKEQMIALTEANETLKKQIEELQQEAKKAITEQKQ 972
Cdd:COG3883 175 -----AQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 238
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
743-976 |
7.29e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 40.77 E-value: 7.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 743 YDELQARLEELQREADSRedaihflQNEKIVLEVAL-QSAKSDKEELDRGARRLEEDTEETSGLLEQLRQDLAVKSNQVE 821
Cdd:PHA02562 200 YNKNIEEQRKKNGENIAR-------KQNKYDELVEEaKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIE 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 822 HLQQETATLRKQ------MQKVKEQfvqQKVMVEAyrrdATSKDQLINELKATKKRLDsEMKELRQELIKLQGEKKTvev 895
Cdd:PHA02562 273 QFQKVIKMYEKGgvcptcTQQISEG---PDRITKI----KDKLKELQHSLEKLDTAID-ELEEIMDEFNEQSKKLLE--- 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 896 ehsrLQKDMSLVHQQMAELEGHLQSVQKErdemeihlqslkfdkeqMIALTEANETLKKQIEELQQEaKKAITEQKQKMK 975
Cdd:PHA02562 342 ----LKNKISTNKQSLITLVDKAKKVKAA-----------------IEELQAEFVDNAEELAKLQDE-LDKIVKTKSELV 399
|
.
gi 568935679 976 R 976
Cdd:PHA02562 400 K 400
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
850-1319 |
7.46e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.09 E-value: 7.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 850 AYRRDATSKDQLI-------NELKATKKRLDSE---MKELRQELIKLQGEKKTVEVEHSRLQKDMSLVhQQMAELEGHLQ 919
Cdd:COG3096 272 DYMRHANERRELSeralelrRELFGARRQLAEEqyrLVEMARELEELSARESDLEQDYQAASDHLNLV-QTALRQQEKIE 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 920 SVQKERDEMEIHLQslkfdkEQMIALTEANEtlkkQIEELQQEAKKAiteqKQKMKRLGSDLSSAQK---EMKTKHKAYE 996
Cdd:COG3096 351 RYQEDLEELTERLE------EQEEVVEEAAE----QLAEAEARLEAA----EEEVDSLKSQLADYQQaldVQQTRAIQYQ 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 997 NAVSILSR---RLQEALASKEATDAELNQLRAQstggssdpvlhekiralevelqnvgqskillekelqevitmtsqeLE 1073
Cdd:COG3096 417 QAVQALEKaraLCGLPDLTPENAEDYLAAFRAK---------------------------------------------EQ 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1074 ESREKVLELEDELQESRGFRRKIKRLEESNKKLALELEHERGkltgLGQSNAALREHNSIletalakreadlvqlnlqvQ 1153
Cdd:COG3096 452 QATEEVLELEQKLSVADAARRQFEKAYELVCKIAGEVERSQA----WQTARELLRRYRSQ-------------------Q 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1154 AVLQRKEEEDRQMKQLVQALQvslekekmevnslkEQMAAARIEAGHNRRHFK--AATLELSEVKKELQAKEHLVQTLQA 1231
Cdd:COG3096 509 ALAQRLQQLRAQLAELEQRLR--------------QQQNAERLLEEFCQRIGQqlDAAEELEELLAELEAQLEELEEQAA 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1232 EVDELQIQDGKHSQEIAQFQTELA-------EARTQLQllqkKLDEQMSQQPTGSQEMEDLKWELDQKEREIQSLKQQLD 1304
Cdd:COG3096 575 EAVEQRSELRQQLEQLRARIKELAarapawlAAQDALE----RLREQSGEALADSQEVTAAMQQLLEREREATVERDELA 650
|
490
....*....|....*
gi 568935679 1305 LTEQQGKKELEGTQQ 1319
Cdd:COG3096 651 ARKQALESQIERLSQ 665
|
|
| PTZ00440 |
PTZ00440 |
reticulocyte binding protein 2-like protein; Provisional |
795-1113 |
9.33e-03 |
|
reticulocyte binding protein 2-like protein; Provisional
Pssm-ID: 240419 [Multi-domain] Cd Length: 2722 Bit Score: 40.97 E-value: 9.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 795 LEEDTEETSGLLEQLRQDLAVKSNQVEHLQQETATLRKQMQKVKEqfvqqkvMVEAyrrdatskdqLINELKATKKRLDS 874
Cdd:PTZ00440 1040 IEEKVDQYISLLEKMKTKLSSFHFNIDIKKYKNPKIKEEIKLLEE-------KVEA----------LLKKIDENKNKLIE 1102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 875 EMKELRQELIKLQGEKKTVEVEHSRLQKDMSLVHQQMAELEGHLQSVQKER------DEMEIHLQSLKFDK--EQMIALT 946
Cdd:PTZ00440 1103 IKNKSHEHVVNADKEKNKQTEHYNKKKKSLEKIYKQMEKTLKELENMNLEDitlnevNEIEIEYERILIDHivEQINNEA 1182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 947 EANETLKKQIE----ELQQEAKKAITEQKQKMKRLgsDLSSAQKEMKTKHKAYENAVSILSRRLQEALASKEATDAELNQ 1022
Cdd:PTZ00440 1183 KKSKTIMEEIEsykkDIDQVKKNMSKERNDHLTTF--EYNAYYDKATASYENIEELTTEAKGLKGEANRSTNVDELKEIK 1260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1023 LRAQSTGGSSdPVLHEKIRALEVELQNVGQ--SKILLEKELQEVITMTSQELEESREKVLELEDELQESRGFRRKIKRLE 1100
Cdd:PTZ00440 1261 LQVFSYLQQV-IKENNKMENALHEIKNMYEflISIDSEKILKEILNSTKKAEEFSNDAKKELEKTDNLIKQVEAKIEQAK 1339
|
330
....*....|...
gi 568935679 1101 ESNKKLALELEHE 1113
Cdd:PTZ00440 1340 EHKNKIYGSLEDK 1352
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
630-1200 |
9.90e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 40.51 E-value: 9.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 630 EKERIAVQLQSIEADMLDQEAAFVQIREAKTMVEEDLQRRLEEFE------------GEREQLQKVADAAASLEQQLEQV 697
Cdd:pfam07111 102 ELDALAVAEKAGQAEAEGLRAALAGAEMVRKNLEEGSQRELEEIQrlhqeqlssltqAHEEALSSLTSKAEGLEKSLNSL 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 698 KLTLFQRDQQLAALQQEHLDVIKQLTSTQEALQAKGQSLDDLHTRYdelqarleelqreadsredaihflqNEKIVLEVA 777
Cdd:pfam07111 182 ETKRAGEAKQLAEAQKEAELLRKQLSKTQEELEAQVTLVESLRKYV-------------------------GEQVPPEVH 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 778 LQSAKSDKEELDRGARRLEEDTEETSGLLEQLRqdlaVKSNQVEH---LQQETATLRKQMQKVKEQFVQQKV--MVEAYR 852
Cdd:pfam07111 237 SQTWELERQELLDTMQHLQEDRADLQATVELLQ----VRVQSLTHmlaLQEEELTRKIQPSDSLEPEFPKKCrsLLNRWR 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 853 RDATSkdqLINELKATKKRLDSEMKELRQELIKLQGEKKTVEVEHSRLQkdmslvhqqmaeleghlQSVQKERDEMEIHL 932
Cdd:pfam07111 313 EKVFA---LMVQLKAQDLEHRDSVKQLRGQVAELQEQVTSQSQEQAILQ-----------------RALQDKAAEVEVER 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 933 QSLKFDKEQMIALTEANETLKKQIEELQQEAKKAITEQKQKMKRLGSDLSSAQkEMKTKHKAYENAVSILSRRLQeALAS 1012
Cdd:pfam07111 373 MSAKGLQMELSRAQEARRRQQQQTASAEEQLKFVVNAMSSTQIWLETTMTRVE-QAVARIPSLSNRLSYAVRKVH-TIKG 450
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1013 KEATDAELNQLRAQSTGGSsdPVLHEKIRALEVELQNVGQSKILLEKELQEVITMTSQELEESREKVLELEDELQE-SRG 1091
Cdd:pfam07111 451 LMARKVALAQLRQESCPPP--PPAPPVDADLSLELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEAERQQLSEvAQQ 528
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1092 FRRKIKRLEESNKKLALELEHERGKLTGLGQSNAALR----EHNSILETALAKREADL-VQLNLQVQAVLQRKEEEDRQM 1166
Cdd:pfam07111 529 LEQELQRAQESLASVGQQLEVARQGQQESTEEAASLRqeltQQQEIYGQALQEKVAEVeTRLREQLSDTKRRLNEARREQ 608
|
570 580 590
....*....|....*....|....*....|....*..
gi 568935679 1167 KQLVQAL---QVSLEKEKMEVNSLKEQMAAARIEAGH 1200
Cdd:pfam07111 609 AKAVVSLrqiQHRATQEKERNQELRRLQDEARKEEGQ 645
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1134-1274 |
1.00e-02 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.52 E-value: 1.00e-02
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935679 1134 LETALAKREADLVQLNLQVQAVLQRKEEEDRQMKQL---VQALQVSLEKEKMEVNSLKEQMAA--ARIEAGHNRRHFKAA 1208
Cdd:COG1579 15 LDSELDRLEHRLKELPAELAELEDELAALEARLEAAkteLEDLEKEIKRLELEIEEVEARIKKyeEQLGNVRNNKEYEAL 94
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568935679 1209 TLELSEVKKELQAKEHLVQTLQAEVDELQIQDGKHSQEIAQFQTELAEARTQLQLLQKKLDEQMSQ 1274
Cdd:COG1579 95 QKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEE 160
|
|
| |
