|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
262-1033 |
7.29e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 92.81 E-value: 7.29e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 262 RNKTNEKLIAHLNVQVDFLQQANKELEKHIQELMETKETVTTEVVNLSNRNEKLCQELTEIDQLAQRLErHKEQVLETAD 341
Cdd:TIGR02168 216 KELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIE-ELQKELYALA 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 342 KELGEAKKEIKRNLCEMRNLEEKMSKLQWELDLSHKEKERLNSELllkSDLETVVHQLEQEKQRLSKKLQSFAVTERELT 421
Cdd:TIGR02168 295 NEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEEL---AELEEKLEELKEELESLEAELEELEAELEELE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 422 LEVERMRLEHGIKRRDKSPSRLDtfLKGIEEERDYYKKELEKLQHLIQRRSCAINYSAREKPPvvkcSEKGDCSTDVHLI 501
Cdd:TIGR02168 372 SRLEELEEQLETLRSKVAQLELQ--IASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE----AELKELQAELEEL 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 502 TRERDELQRMLERFEKYMEDIQSNVKLLTAERDKLNVLYKEAKEELSTLRKESTNSTSPNHLVSCVEKEKER------AL 575
Cdd:TIGR02168 446 EEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGlsgilgVL 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 576 SELRRITAEKE-----ALREKLKNIQERNavgKSDLEKTIEHLTyinhqlENEK-------YELQSKMLMMKETVESLEN 643
Cdd:TIGR02168 526 SELISVDEGYEaaieaALGGRLQAVVVEN---LNAAKKAIAFLK------QNELgrvtflpLDSIKGTEIQGNDREILKN 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 644 KSKLQAQKLSHVTGDSSHQKTemtslriVSEQLQRSL--DDCQHRLSIKRgeLESAQEQIKMLEQKLENLSHRMTVQSEE 721
Cdd:TIGR02168 597 IEGFLGVAKDLVKFDPKLRKA-------LSYLLGGVLvvDDLDNALELAK--KLRPGYRIVTLDGDLVRPGGVITGGSAK 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 722 THAmkktiGVMDKEKDflqetVDEKTEKIANLQESLLSKEKVIAQLKVTVAEYETSLNQLQETLTTRDREINSLRRQLDA 801
Cdd:TIGR02168 668 TNS-----SILERRRE-----IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLAR 737
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 802 SHKELDDVGKSREISFKENRRLQDDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENKDLLD 881
Cdd:TIGR02168 738 LEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNE 817
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 882 RF-------QMLHSRAEDWEVKAQQAEGENSSVRLELLSIDTERRHLRERVDLLEKEIQEHINAHHAYESQISSMAKAMS 954
Cdd:TIGR02168 818 EAanlrerlESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELE 897
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 955 QLEEELRRHESEKATMLGDVSSLRELCIKLDSGKDVMTQQLNSK--------SLELERAVAELENVKSESELLKKQLTNE 1026
Cdd:TIGR02168 898 ELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLqerlseeySLTLEEAEALENKIEDDEEEARRRLKRL 977
|
....*..
gi 568935809 1027 RQTIKNL 1033
Cdd:TIGR02168 978 ENKIKEL 984
|
|
| cc_Cep135_MBD |
cd22292 |
coiled-coil microtubule binding domain of centrosomal protein of 135 kDa (Cep135) and similar ... |
81-142 |
3.07e-18 |
|
coiled-coil microtubule binding domain of centrosomal protein of 135 kDa (Cep135) and similar proteins; Cep135, also called centrosomal protein 4, is involved in early centriole assembly, duplication, biogenesis, and formation. It is required for the recruitment of CEP295 to the proximal end of new-born centrioles at the centriolar microtubule wall during early S phase in a PLK4-dependent manner. This model corresponds to a conserved coiled-coil domain of Cep135, which is critical for microtubule binding.
Pssm-ID: 412088 [Multi-domain] Cd Length: 62 Bit Score: 79.53 E-value: 3.07e-18
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568935809 81 ENNELYLELMKLRECSDKHIKDLKTTLKKCSRETADLKFLNNQYVHKVKVLEKESKAKDEKI 142
Cdd:cd22292 1 ENNELHLELIKLKEESDAKIKDLKSSLRKLEHENADLRFLNSQYLHKIKVLEKESKAKSEKI 62
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
195-934 |
4.87e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.02 E-value: 4.87e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 195 IADLLQVADNRIQELQEEVQQLQEKLAQMEKGVLDYSKQIELREREIQRLSlaldggcspdvlsleTRNKTNEKLIAHLN 274
Cdd:TIGR02168 258 LTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILR---------------ERLANLERQLEELE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 275 VQVDFLQQANKELEKHIQELMETKETVTTEVVNLSNRNEKLCQELTEidqlAQRLERHKEQVLETADKELGEAKKEIKRN 354
Cdd:TIGR02168 323 AQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEE----LESRLEELEEQLETLRSKVAQLELQIASL 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 355 LCEMRNLEEKMSKLQWELDLSHKEKERLNSELLlKSDLETVVHQLEQEKQRLSKKLQSFAVTERELTLEVERMRL----- 429
Cdd:TIGR02168 399 NNEIERLEARLERLEDRRERLQQEIEELLKKLE-EAELKELQAELEELEEELEELQEELERLEEALEELREELEEaeqal 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 430 ------EHGIKRRDKSPSRLDTFLKGIEEERDYYKKELEKLQHLIQRRSCAIN----YSA---------------REKPP 484
Cdd:TIGR02168 478 daaereLAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISvdegYEAaieaalggrlqavvvENLNA 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 485 VVKC------SEKGDCS---TDVHLITRERDELQRMLERFEKYMEDIQSNVKLLTAERDKLNVL---------YKEAKEE 546
Cdd:TIGR02168 558 AKKAiaflkqNELGRVTflpLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlggvlvvddLDNALEL 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 547 LSTLRKESTNSTSPNHLV----SCVEKEKERALSELRRiTAEKEALREKLKNIQERNAVGK---SDLEKTIEHLTYINHQ 619
Cdd:TIGR02168 638 AKKLRPGYRIVTLDGDLVrpggVITGGSAKTNSSILER-RREIEELEEKIEELEEKIAELEkalAELRKELEELEEELEQ 716
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 620 LENEKYELQSKMLMMKETVESLENKSKLQAQKLshvtgdsshqktemtslrivsEQLQRSLDDCQHRLSIKRGELESAQE 699
Cdd:TIGR02168 717 LRKELEELSRQISALRKDLARLEAEVEQLEERI---------------------AQLSKELTELEAEIEELEERLEEAEE 775
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 700 QIKMLEQKLENLSHRMTVQSEETHAMKKTIGVMDKEKDFLQETVDEKTEKIANLQESLLSKEKVIAQLkvtvaeyETSLN 779
Cdd:TIGR02168 776 ELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDL-------EEQIE 848
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 780 QLQETLTTRDREINSLRRQLDASHKELDDVGKSREISFKENRRLQDDLATMARENQEISLELEAAVQEKEEMKSRVHKYI 859
Cdd:TIGR02168 849 ELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLE 928
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568935809 860 TEVSRWESLMAakekenkDLLDRFqmlhsrAEDWEVKAQQAEGENSsvrlellSIDTERRHLRERVDLLEKEIQE 934
Cdd:TIGR02168 929 LRLEGLEVRID-------NLQERL------SEEYSLTLEEAEALEN-------KIEDDEEEARRRLKRLENKIKE 983
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
196-884 |
1.03e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 76.25 E-value: 1.03e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 196 ADLLQVADNRIQELQEEVQQLQEKLAQMEKGVLDYSKQIELREREIQRLSLALDggcspdvlslETRNKTNEKLIAHLNV 275
Cdd:TIGR02168 364 EAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRE----------RLQQEIEELLKKLEEA 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 276 QVDFLQQANKELEKHIQELMETKETVTTEVVNLSNRNEKLCQELT----EIDQLAQRLerHKEQVLETADKELGEAKKEI 351
Cdd:TIGR02168 434 ELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDaaerELAQLQARL--DSLERLQENLEGFSEGVKAL 511
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 352 KRNLCEMRNLEEKMSKL-----QWELDLSHKEKERLNSelLLKSDLETVVHQLEQEKQRLSKKLQSFAVT-ERELTLEVE 425
Cdd:TIGR02168 512 LKNQSGLSGILGVLSELisvdeGYEAAIEAALGGRLQA--VVVENLNAAKKAIAFLKQNELGRVTFLPLDsIKGTEIQGN 589
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 426 RMRLEHGIKRRDKSPSRLDTFLKGIEEERDYykkeLEKLQHLIQRRSCAINYSAREKPPVVKCSEKGDCSTDVHLITRER 505
Cdd:TIGR02168 590 DREILKNIEGFLGVAKDLVKFDPKLRKALSY----LLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGS 665
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 506 D-------ELQRMLERFEKYMEDIQSNVKLLTAERDKLNVLYKEAKEELSTLRKEstnSTSPNHLVSCVEKEKERALSEL 578
Cdd:TIGR02168 666 AktnssilERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKE---LEELSRQISALRKDLARLEAEV 742
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 579 RRITAEKEALREKLKNIQERNAVGKSDLEKTIEHLtyinHQLENEKYELQSKMLMMKETVESL-ENKSKLQAqklshvtg 657
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEEL----AEAEAEIEELEAQIEQLKEELKALrEALDELRA-------- 810
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 658 dsshqktEMTSLRIVSEQLQRSLDDCQHRLSIKRGELESAQEQIKMLEQKLENLSHRMTVQSEETHAMKKTIGVMDKEKD 737
Cdd:TIGR02168 811 -------ELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERA 883
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 738 FLQETVDEKTEKIANLQESLLSKEKVIAQLKVTVAEYETSLNQLQETLTTRDREINSLRRQLDASHK-ELDDVGKSREIS 816
Cdd:TIGR02168 884 SLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSlTLEEAEALENKI 963
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568935809 817 FKENRRLQDDLATMARENQEISLELEAAVQEKEEMKSRvHKYITE-----VSRWESLMAAKEKENKDLLDRFQ 884
Cdd:TIGR02168 964 EDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKER-YDFLTAqkedlTEAKETLEEAIEEIDREARERFK 1035
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
568-1078 |
4.35e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.74 E-value: 4.35e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 568 EKEKERALSELRRITAEKEALREKLKNIQERNAVGKSDL---EKTIEHLTYINHQLENEKYELQSKMLMMKETVESLENK 644
Cdd:COG1196 224 ELEAELLLLKLRELEAELEELEAELEELEAELEELEAELaelEAELEELRLELEELELELEEAQAEEYELLAELARLEQD 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 645 SKLQAQKLSHVTGDSSHQKTEMTSLRIVSEQLQRSLDDCQHRLSIKRGELESAQEQIKMLEQKLENLSHRMTVQSEETHA 724
Cdd:COG1196 304 IARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEE 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 725 MKKTIGVMDKEKDFLQETVDEKTEKIANLQESLLSKEKVIAQLKVTVAEYETSLNQLQETLTTRDREINSLRRQLDASHK 804
Cdd:COG1196 384 LAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLE 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 805 ELDDVGKSREisfKENRRLQDDLATMARENQEISLELEAAVQ-----------EKEEMKSRVHKYITEVSRWESLMAAKE 873
Cdd:COG1196 464 LLAELLEEAA---LLEAALAELLEELAEAAARLLLLLEAEADyegflegvkaaLLLAGLRGLAGAVAVLIGVEAAYEAAL 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 874 KEnkDLLDRFQMLHSRAEDWEVKAQQAEGENSSVRLELLSIDTERRHLRERVDLLEKEIQEHINAHhayESQISSMAKAM 953
Cdd:COG1196 541 EA--ALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLV---ASDLREADARY 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 954 SQLEEELRRHESEKATMLGDVSSLRELCIKLDSGKDVMTQQLNSKSLELERAVAELENVKSESELLKKQLTNERQTIKNL 1033
Cdd:COG1196 616 YVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELEL 695
|
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 568935809 1034 ESLLATNRDKEFQSHLTSHEKDTEIQLLKEKLNLSESKLTTQSRE 1078
Cdd:COG1196 696 EEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEE 740
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
512-1121 |
6.08e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.47 E-value: 6.08e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 512 LERFEKYMEDIQSNVKLLTAERDKLNVLYKEAKEELSTLRKESTNstspnhlvscVEKEKERALSELRRITAEKEALREK 591
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSE----------LEEEIEELQKELYALANEISRLEQQ 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 592 LKNIQERnavgKSDLEKTIEHLTYINHQLENEKYELQSKMLMMKETVESLENKSKLQAQKLSHVTGDSSHQKTEMTSLRI 671
Cdd:TIGR02168 304 KQILRER----LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 672 VSEQLQRSLDDCQHRLSIKRGELESAQEQIKMLEQKLENL-----SHRMTVQSEETHAMKKTIGVMDKEKDFLQETVDEK 746
Cdd:TIGR02168 380 QLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLqqeieELLKKLEEAELKELQAELEELEEELEELQEELERL 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 747 TEKIANLQESLLSKEKVIAQLKVTVAEYETSLNQLQETLTTRDREINSLRRQLDASHKELDDVGK-SREISFKENRRLQD 825
Cdd:TIGR02168 460 EEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVlSELISVDEGYEAAI 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 826 DLATMARENQEISLELEAAVQE----KEEMKSRVHkYITEVSRWESLMAAKEKENKDLLDRFQMLHSRAEDWEVKAQQAE 901
Cdd:TIGR02168 540 EAALGGRLQAVVVENLNAAKKAiaflKQNELGRVT-FLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAL 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 902 G---ENSSVRLELLSIDTERRHLRERVDLLEKEiQEHINAHHAYESQISSMAKAMSQLEEELRRHESEKATMLGDVSSLR 978
Cdd:TIGR02168 619 SyllGGVLVVDDLDNALELAKKLRPGYRIVTLD-GDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELE 697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 979 ELCIKLDSGKDVMTQQL-------NSKSLELERAVAELENVKSESELLKKQLTNERQTIKNLESLLATNRDKEFQSHLTS 1051
Cdd:TIGR02168 698 KALAELRKELEELEEELeqlrkelEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEEL 777
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 1052 HEKDTEIQLLKEKLNLSESKLTTQSRETSMLRTKVTQLQTDYDNLKRQMsnEKYERIRKDLIEQAQRTAQ 1121
Cdd:TIGR02168 778 AEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERL--ESLERRIAATERRLEDLEE 845
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
291-1117 |
2.15e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.09 E-value: 2.15e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 291 IQELMETKETVTTEVVNLSNRNEKLCQELTEIDQLAQRLERHKEQVLETADKELGEAKKEIKRNLCEMRNLEEKMSKLQW 370
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 371 ELDLSHKEKERLNSELllkSDLETVVHQLEQEKQRLSKKL------QSFAVTERELTLEVERMRLEHGIKRRDKSPSRLD 444
Cdd:TIGR02169 245 QLASLEEELEKLTEEI---SELEKRLEEIEQLLEELNKKIkdlgeeEQLRVKEKIGELEAEIASLERSIAEKERELEDAE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 445 TFLKGIEEERDYYKKELEKLQHLIQRRScainysarekppvvkcsekgdcstdvhlitRERDELQRMLERFEKYMEDIQS 524
Cdd:TIGR02169 322 ERLAKLEAEIDKLLAEIEELEREIEEER------------------------------KRRDKLTEEYAELKEELEDLRA 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 525 NVKLLTAERDKLNVLYKEAKEELSTLRKESTNStspnhlvscvEKEKERALSELRRITAEKEALREKLKNIQERNAVGKS 604
Cdd:TIGR02169 372 ELEEVDKEFAETRDELKDYREKLEKLKREINEL----------KRELDRLQEELQRLSEELADLNAAIAGIEAKINELEE 441
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 605 DLEKTIEHLTYINHQLENEKYEL---QSKMLMMKETVESLENKSKLQAQKLSHVTGDSSHQKTEMTSLRIVSEQLQRSLD 681
Cdd:TIGR02169 442 EKEDKALEIKKQEWKLEQLAADLskyEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQ 521
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 682 DCQHRLSikrgELESAQEQ-IKMLEQKLENLSHRMTVQSEEThaMKKTIGVMdKEKDFLQETVDEKTEKIANLQESLLSK 760
Cdd:TIGR02169 522 GVHGTVA----QLGSVGERyATAIEVAAGNRLNNVVVEDDAV--AKEAIELL-KRRKAGRATFLPLNKMRDERRDLSILS 594
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 761 EKVIAQLKVTVAEYETSLNQ-----LQETLTTRDreINSLRRQL----------DASHKELDDVGKSREISFKEN--RRL 823
Cdd:TIGR02169 595 EDGVIGFAVDLVEFDPKYEPafkyvFGDTLVVED--IEAARRLMgkyrmvtlegELFEKSGAMTGGSRAPRGGILfsRSE 672
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 824 QDDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENKDLLDRFQMLHSRAEDWEVKAQqaege 903
Cdd:TIGR02169 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLS----- 747
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 904 nssvrlellSIDTERRHLRERVDLLEKEIQEhinahhaYESQISSMAKAMSQLEEELRRHESEKATmlGDVSSLRELCIK 983
Cdd:TIGR02169 748 ---------SLEQEIENVKSELKELEARIEE-------LEEDLHKLEEALNDLEARLSHSRIPEIQ--AELSKLEEEVSR 809
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 984 LDSGKDVMTQQLNSKSLELERAVAELENVKSESELLKKQLTNERQTIKNLESLLAtnrdkefqshltshEKDTEIQLLKE 1063
Cdd:TIGR02169 810 IEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKE--------------ELEEELEELEA 875
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....
gi 568935809 1064 KLNLSESKLTTQSRETSMLRTKVTQLQTDYDNLKRQMsnEKYERIRKDLIEQAQ 1117
Cdd:TIGR02169 876 ALRDLESRLGDLKKERDELEAQLRELERKIEELEAQI--EKKRKRLSELKAKLE 927
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
205-975 |
9.01e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.16 E-value: 9.01e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 205 RIQELQEEVQQLQEKLAQMEKGVLDYSK-QIELREREIQRLSLALdggcspdvLSLETRNKTNEKLIAHLNVQVDFLQQA 283
Cdd:TIGR02169 188 RLDLIIDEKRQQLERLRREREKAERYQAlLKEKREYEGYELLKEK--------EALERQKEAIERQLASLEEELEKLTEE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 284 NKELEKHIQELMETKETVTTEVVNLS----NRNEKLCQELTEIDQLAQRLERHKEQVLETADKELGEAKKEIKRNLCEMR 359
Cdd:TIGR02169 260 ISELEKRLEEIEQLLEELNKKIKDLGeeeqLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIE 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 360 NLEEKMSKLQWELD-LSHKEKERLNSELLLKSDLETVVHQLEQEKQRLSKKLQSFAVTEREL-TLEVERMRLEHGIKRRD 437
Cdd:TIGR02169 340 ELEREIEEERKRRDkLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREInELKRELDRLQEELQRLS 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 438 KSPSRLDTFLKGIEEERDYYKKELEKLQHLIQRRSCAINYSAREKPPVVKcsEKGDCSTDVHLITRERDELQRMLERFEK 517
Cdd:TIGR02169 420 EELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQ--ELYDLKEEYDRVEKELSKLQRELAEAEA 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 518 YMEDIQSNVKLLTAERDKLNVLYKEAKEELSTLRK---------ESTNSTSPNHLV--------SCVEKEKERALSELRR 580
Cdd:TIGR02169 498 QARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSvgeryataiEVAAGNRLNNVVveddavakEAIELLKRRKAGRATF 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 581 ITAEKEALREKLKNIQERNAVgksdLEKTIEHLTYINHQLENEKYELQSKMLmmketVESLENKSKLQAQ-KLSHVTGDS 659
Cdd:TIGR02169 578 LPLNKMRDERRDLSILSEDGV----IGFAVDLVEFDPKYEPAFKYVFGDTLV-----VEDIEAARRLMGKyRMVTLEGEL 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 660 SHQKTEMT-------SLRIVSEQLQRSLDDCQHRLSIKRGELESAQEQIKMLEQKLENLSHRMTVQSEETHAMKKTIGVM 732
Cdd:TIGR02169 649 FEKSGAMTggsraprGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQL 728
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 733 DKEKDFLQETVDEKTEKIANLQESLLSKEKVIAQLKVTVAEYETSLNQLQEtlttrdrEINSLRRQLdaSHKELDDVGKS 812
Cdd:TIGR02169 729 EQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEE-------ALNDLEARL--SHSRIPEIQAE 799
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 813 REISFKENRRLQDDLATMARENQEISLELEAAVQEKEEMKSRVHKyitevsrWESLMAAKEKENKDLLDRFQMLHSRAED 892
Cdd:TIGR02169 800 LSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRID-------LKEQIKSIEKEIENLNGKKEELEEELEE 872
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 893 WEVKAQQAEGENSSVRLELLSIDTERRHLRERVDLLEKEIQEHinahhayESQISSMAKAMSQLEEELRRHESEKATMLG 972
Cdd:TIGR02169 873 LEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKK-------RKRLSELKAKLEALEEELSEIEDPKGEDEE 945
|
...
gi 568935809 973 DVS 975
Cdd:TIGR02169 946 IPE 948
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
675-980 |
3.04e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.49 E-value: 3.04e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 675 QLQRSLDDCQHRLSIKRgeLESAQEQIKMLEQKLENLSHRMTVQSEEthamkktIGVMDKEKDFLQETVDEKTEKIANLQ 754
Cdd:COG1196 217 ELKEELKELEAELLLLK--LRELEAELEELEAELEELEAELEELEAE-------LAELEAELEELRLELEELELELEEAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 755 ESLLSKEKVIAQLKVTVAEYETSLNQLQETLTTRDREINSLRRQLDASHKELDDVGKSREISFKENRRLQDDLATMAREN 834
Cdd:COG1196 288 AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 835 QEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENKDLLDRFQMLHSRAEDWEVKAQQAEGENSSVRLELLSI 914
Cdd:COG1196 368 LEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA 447
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568935809 915 DTERRHLRERVDLLEKEIQEHINAHHAYESQISSMAKAMSQLEEELRRHESEKATMLGDVSSLREL 980
Cdd:COG1196 448 AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAA 513
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
77-813 |
6.56e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.46 E-value: 6.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 77 RLNKENNELYLELMKLR-ECSDKHIKDLKTTLKKCSRETADLKFLNNQYVHKVKVLEKESKAKDEKIQQLQEK--NLRAV 153
Cdd:TIGR02168 217 ELKAELRELELALLVLRlEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKElyALANE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 154 VQTPGGRKRNIAFRRQRMQIDepapPSEVSAYP--VPQPEDPYIADLLQVADnRIQELQEEVQQLQEKLAQMEKGVLDYS 231
Cdd:TIGR02168 297 ISRLEQQKQILRERLANLERQ----LEELEAQLeeLESKLDELAEELAELEE-KLEELKEELESLEAELEELEAELEELE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 232 KQIELREREIQRLSLALDGgCSPDVLSLETRNKTNEKLIAHLNVQVDFLQQANKELEKHIQELmETKETVTTevvnLSNR 311
Cdd:TIGR02168 372 SRLEELEEQLETLRSKVAQ-LELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA-ELKELQAE----LEEL 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 312 NEKLCQELTEIDQLAQRLERHKEQvLETADKELGEAKKEIKR---NLCEMRNLEEKMSKLQWELDLSHKEKERLNSELLL 388
Cdd:TIGR02168 446 EEELEELQEELERLEEALEELREE-LEEAEQALDAAERELAQlqaRLDSLERLQENLEGFSEGVKALLKNQSGLSGILGV 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 389 KSDLETVVHQLEQEKQR-LSKKLQSFAVTERELTLE----------VERMRLEHGIKRRDKSPSRLDTFLKGIEE----- 452
Cdd:TIGR02168 525 LSELISVDEGYEAAIEAaLGGRLQAVVVENLNAAKKaiaflkqnelGRVTFLPLDSIKGTEIQGNDREILKNIEGflgva 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 453 -ERDYYKKELEK-LQHLIQRRSC------AINYSAREKPPVVKCSEKGDCSTDVHLITRERD-------ELQRMLERFEK 517
Cdd:TIGR02168 605 kDLVKFDPKLRKaLSYLLGGVLVvddldnALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAktnssilERRREIEELEE 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 518 YMEDIQSNVKLLTAERDKLNVLYKEAKEELSTLRKE----STNSTSPNHLVSCVEKEKERALSELRRITAEKEALREKLK 593
Cdd:TIGR02168 685 KIEELEEKIAELEKALAELRKELEELEEELEQLRKEleelSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIE 764
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 594 NIQERNAVGKSDLEKTIEHLTYINHQLENEKYELQSkmlmMKETVESLENKSKLQAQKLSHVTGDSSHQKTEMTSLRIVS 673
Cdd:TIGR02168 765 ELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA----LREALDELRAELTLLNEEAANLRERLESLERRIAATERRL 840
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 674 EQLQRSLDDCQHRLSIKRGELESAQEQIKMLEQKLENLSHRMTVQSEETHAMKK-------TIGVMDKEKDFLQETVDEK 746
Cdd:TIGR02168 841 EDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSeleelseELRELESKRSELRRELEEL 920
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 747 TEK--------------IANLQESLLSKEKV---------------IAQLKVTVAEYETSLNQL---------------- 781
Cdd:TIGR02168 921 REKlaqlelrleglevrIDNLQERLSEEYSLtleeaealenkieddEEEARRRLKRLENKIKELgpvnlaaieeyeelke 1000
|
810 820 830
....*....|....*....|....*....|...
gi 568935809 782 -QETLTTRDREINSLRRQLDASHKELDDVGKSR 813
Cdd:TIGR02168 1001 rYDFLTAQKEDLTEAKETLEEAIEEIDREARER 1033
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
202-848 |
3.06e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.16 E-value: 3.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 202 ADNRIQELQEEVQQLQEKLAQMEKGVLDYSKQIELREREIQRLSLALDgGCSPDVLSLETRNKTNEKLIAHLNVQVDFLQ 281
Cdd:TIGR02169 306 LERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRD-KLTEEYAELKEELEDLRAELEEVDKEFAETR 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 282 QANKELEKHIQELMETKETVTTEVVNLSNRNEKLCQELTEIDQLAQRLE-----------------RHKEQVLETADKEL 344
Cdd:TIGR02169 385 DELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEakineleeekedkaleiKKQEWKLEQLAADL 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 345 GEAKKEIKRNLCEMRNLEEKMSKLQWELD--------LSHKEKERLNSELLLKSDLETV---VHQLEQEKQRLSKKLQS- 412
Cdd:TIGR02169 465 SKYEQELYDLKEEYDRVEKELSKLQRELAeaeaqaraSEERVRGGRAVEEVLKASIQGVhgtVAQLGSVGERYATAIEVa 544
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 413 ------FAVTERELT------------------LEVERMRLEHGIKRRDKSPSRLDTFLKGIEEERDYYKKELEKLQ--- 465
Cdd:TIGR02169 545 agnrlnNVVVEDDAVakeaiellkrrkagratfLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFKYVFGdtl 624
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 466 ----------HLIQRRSCAINYSAREKPPVVKCSEKGDCSTDVhLITRERDELQRMLERfekyMEDIQSNVKLLTAERDK 535
Cdd:TIGR02169 625 vvedieaarrLMGKYRMVTLEGELFEKSGAMTGGSRAPRGGIL-FSRSEPAELQRLRER----LEGLKRELSSLQSELRR 699
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 536 LNVLYKEAKEELSTLRKEstnstspnhlVSCVEKEKERALSELRRITAEKEALREKLKNIQERNAVGKSDLEKTIEHLTY 615
Cdd:TIGR02169 700 IENRLDELSQELSDASRK----------IGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEE 769
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 616 INHQLENEKYELQS--KMLMMKETVESLENKSKLQAQ------KLSHVTGDSSHQKTEMTSLRIVSEQLQRSLDDCQHRL 687
Cdd:TIGR02169 770 LEEDLHKLEEALNDleARLSHSRIPEIQAELSKLEEEvsrieaRLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQI 849
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 688 SIKR-------GELESAQEQIKMLEQKLENLSHRMTVQSEETHAMKKTIGVMDKEKDFLQETVDEKTEKIANLQESLLSK 760
Cdd:TIGR02169 850 KSIEkeienlnGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEAL 929
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 761 EKVIAQLK------VTVAEYETSLNQLQETLTTRDREINSLR-------RQLDASHKELDDVGKSREISFKENRRLQDDL 827
Cdd:TIGR02169 930 EEELSEIEdpkgedEEIPEEELSLEDVQAELQRVEEEIRALEpvnmlaiQEYEEVLKRLDELKEKRAKLEEERKAILERI 1009
|
730 740
....*....|....*....|.
gi 568935809 828 ATMARENQEISLELEAAVQEK 848
Cdd:TIGR02169 1010 EEYEKKKREVFMEAFEAINEN 1030
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
296-864 |
3.64e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.77 E-value: 3.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 296 ETKETVTTEVVNL---SNRNEKLCQELTEIDQLAQRLER------HKEQVLETADKELGEAKKEIKRNLCEMRNLEEKMS 366
Cdd:PRK03918 145 ESREKVVRQILGLddyENAYKNLGEVIKEIKRRIERLEKfikrteNIEELIKEKEKELEEVLREINEISSELPELREELE 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 367 KLQWELDLSHKEKERLNSELLLKSDLETVVHQLEQEKQRLSKKLQSFAVTERELTLEVERMRlehGIKRRDKSPSRLDTF 446
Cdd:PRK03918 225 KLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK---ELKEKAEEYIKLSEF 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 447 LKGIEEERDYYKKELEKLQHLIQRRSCAINYSAREKPPVVKCSEKGDCSTDVHLITRERDELQRMLERFEKYMEDIQSNV 526
Cdd:PRK03918 302 YEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRL 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 527 KLLTAErdKLNVLYKEAKEELSTLRKESTNSTSPNHLVSCVEKEKERALSELRRITAE-----KEALREKLKNIQERNAV 601
Cdd:PRK03918 382 TGLTPE--KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKcpvcgRELTEEHRKELLEEYTA 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 602 GKSDLEKTIEHLTYINHQLENEKYEL------QSKMLMMKETVESLEN-KSKLQAQKLSHVTGDSS-HQKTEMTSLRIVS 673
Cdd:PRK03918 460 ELKRIEKELKEIEEKERKLRKELRELekvlkkESELIKLKELAEQLKElEEKLKKYNLEELEKKAEeYEKLKEKLIKLKG 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 674 EqlQRSLDDCQHRLSIKRGELESAQEQIKMLEQKLENLSHRMTVQSEET-HAMKKTIGVMDKEKDFLQETVD------EK 746
Cdd:PRK03918 540 E--IKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESvEELEERLKELEPFYNEYLELKDaekeleRE 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 747 TEKIANLQESLLSKEKVIAQLKVTVAEYETSLNQL-----QETLTTRDREINSLRRQLDASHKELDDVGKSREISFKENR 821
Cdd:PRK03918 618 EKELKKLEEELDKAFEELAETEKRLEELRKELEELekkysEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLE 697
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 568935809 822 RLQDDLATMARENQEISLeLEAAVQEKEEMKSRVHKYITEVSR 864
Cdd:PRK03918 698 KLKEELEEREKAKKELEK-LEKALERVEELREKVKKYKALLKE 739
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
199-436 |
5.64e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.25 E-value: 5.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 199 LQVADNRIQELQEEVQQLQEKLAQMEKGVLDYSKQIELREREIQRLSLALdggcspdvLSLETRNKTNEKLIAHLNVQVD 278
Cdd:COG1196 241 LEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEE--------YELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 279 FLQQANKELEKHIQELMETKETVTTEVVNLSNRNEKLCQELTEIDQLAQRLERHKEQVLETADKELGEAKKEIKRNLCEM 358
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568935809 359 RNLEEKMSKLQWELDLSHKEKERLNSELLLKSDLETVVHQLEQEKQRLSKKLQSFAVTERELTLEVERMRLEHGIKRR 436
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE 470
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
568-1036 |
1.07e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.20 E-value: 1.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 568 EKEKERALSELRRITAEKEALREKLKNIQErnavgksdLEKTIEHLTYINHQLENEKYELQSKMLMMKETVESLENKSKL 647
Cdd:PRK02224 226 EEQREQARETRDEADEVLEEHEERREELET--------LEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDD 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 648 QAQKLSHVTGDSSHQKTEMTSLRIVSEQLQRSLDDCQHRLSIKRGELESAQEQIKMLEQKLENLSHRMTVQSEETHAMKK 727
Cdd:PRK02224 298 LLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEARE 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 728 TIGVMDKEKDFLQETVDEKTEKIANLQESLLSKEKVIAQLKVTVAEYETSLNQLQETLTTRDREINSLRRQLDASH---- 803
Cdd:PRK02224 378 AVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKcpec 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 804 -KELDDVGKSREISFKENRR--LQDDLATMARENQEIS---------LELEAAVQEKEEMKSRVHKYITEVsrwESLMAA 871
Cdd:PRK02224 458 gQPVEGSPHVETIEEDRERVeeLEAELEDLEEEVEEVEerleraedlVEAEDRIERLEERREDLEELIAER---RETIEE 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 872 KEKENKDLLDRFQMLHSRAEDWEVKAQQAEGENSSVRLELLSIDTERRHLRERVDLLEKeIQEHINAHHAYESQISSMA- 950
Cdd:PRK02224 535 KRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER-IRTLLAAIADAEDEIERLRe 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 951 --KAMSQLEEELRRHESEKATmlgdvsSLRELCIKLDsGKDVMTQQLNSKSLE--LERAVAELENVKSESELLKKQLTNE 1026
Cdd:PRK02224 614 krEALAELNDERRERLAEKRE------RKRELEAEFD-EARIEEAREDKERAEeyLEQVEEKLDELREERDDLQAEIGAV 686
|
490
....*....|
gi 568935809 1027 RQTIKNLESL 1036
Cdd:PRK02224 687 ENELEELEEL 696
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
569-913 |
1.34e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.22 E-value: 1.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 569 KEKERALSELRRiTAEKEalrEKLKNIQERnavgKSDLEKTIehLTYINHQLENEKYELQSKMLMMKETVESLENKSKLQ 648
Cdd:TIGR02168 196 NELERQLKSLER-QAEKA---ERYKELKAE----LRELELAL--LVLRLEELREELEELQEELKEAEEELEELTAELQEL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 649 AQKLShvtgdsshqktemtSLRIVSEQLQRSLDDCQHRLSIKRGELESAQEQIKMLEQKLENLSHRMTVQSEETHAMKKT 728
Cdd:TIGR02168 266 EEKLE--------------ELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 729 IGVMDKEKDFLQETVDEKTEKIANLQESLLSKEKVIAQLKVTVAEYETSLNQLQETLTTRDREINSLRRQLDASHKELDD 808
Cdd:TIGR02168 332 LDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLER 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 809 VGKSREISFKENRRLQDDLATMAREnqEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENKDLLDRFQMLHS 888
Cdd:TIGR02168 412 LEDRRERLQQEIEELLKKLEEAELK--ELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQA 489
|
330 340
....*....|....*....|....*
gi 568935809 889 RAEDWEVKAQQAEGENSSVRLELLS 913
Cdd:TIGR02168 490 RLDSLERLQENLEGFSEGVKALLKN 514
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
204-814 |
1.87e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.46 E-value: 1.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 204 NRIQELQEEVQQLQEKLAQMEKGVLDYSKQIELREREIQRLslaldggcspdvLSLETRNKTNEKLIAHLNVQVDFLQQA 283
Cdd:PRK03918 207 REINEISSELPELREELEKLEKEVKELEELKEEIEELEKEL------------ESLEGSKRKLEEKIRELEERIEELKKE 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 284 NKELEKHIQELMETKEtVTTEVVNLSNRNEKLCQELTEIDQLAQRLErhkeqvletadkelgEAKKEIKRNLCEMRNLEE 363
Cdd:PRK03918 275 IEELEEKVKELKELKE-KAEEYIKLSEFYEEYLDELREIEKRLSRLE---------------EEINGIEERIKELEEKEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 364 KMSKLQWELDLSHKEKERLNSELLLKSDLETVVHQLEQEKQRLSkklqsfavterELTLEVERMRLEHGIKRRDKspsrl 443
Cdd:PRK03918 339 RLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLT-----------GLTPEKLEKELEELEKAKEE----- 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 444 dtflkgIEEERDYYKKELEKLQHLIQRRSCAINYSArekppvvkcSEKGDCSTDVHLITRERDElqRMLERFEKYMEDIQ 523
Cdd:PRK03918 403 ------IEEEISKITARIGELKKEIKELKKAIEELK---------KAKGKCPVCGRELTEEHRK--ELLEEYTAELKRIE 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 524 SNVKLLTAERDKLNVLYKEAKEELSTLRKESTNSTSPNHLVSCVEKEKERALSELRRITAEKEALREKLKNIQERNAVGK 603
Cdd:PRK03918 466 KELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLK 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 604 SDLEKTIEhltyinhqLENEKYELQSKMLMMKETVESLENKSKlqaqklshvtgdsshqKTEMTSLRIVSEQLQR----- 678
Cdd:PRK03918 546 KELEKLEE--------LKKKLAELEKKLDELEEELAELLKELE----------------ELGFESVEELEERLKElepfy 601
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 679 ----SLDDCQHRLSIKRGELESAQEQIKMLEQKLENLSHRMTVQSEEthamkktigVMDKEKDFLQETVDEKTEKIANLQ 754
Cdd:PRK03918 602 neylELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKE---------LEELEKKYSEEEYEELREEYLELS 672
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 755 ESLLSKEKVIAQLKVTVAEYETSLNQLQETLTTRDREinslRRQLDASHKELDDVGKSRE 814
Cdd:PRK03918 673 RELAGLRAELEELEKRREEIKKTLEKLKEELEEREKA----KKELEKLEKALERVEELRE 728
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
778-1097 |
3.18e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.68 E-value: 3.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 778 LNQLQETLTTRDREINSLRRQLDASHKELDdvgKSREISFKENRRLQDDLATMARENQEISLELEAAVQEKEEMKSRVHK 857
Cdd:TIGR02168 188 LDRLEDILNELERQLKSLERQAEKAERYKE---LKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 858 YITEVSRWESLMAAKEKENKDLLDRFQMLHSRAEDWEVKAQQAEGENSSVRLELLSIDTERRHLRERVDLLEKEIQEhin 937
Cdd:TIGR02168 265 LEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAE--- 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 938 ahhaYESQISSMAKAMSQLEEELRRHESEKATMLGDVSSLRELCIKLDSGKDVMTQQLNSKSLELERAVAELENvksese 1017
Cdd:TIGR02168 342 ----LEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLER------ 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 1018 lLKKQLTNERQTIKNLESLLATNRDKEFQSHLTshEKDTEIQLLKEKLNLSESKLTTQSRETSMLRTKVTQLQTDYDNLK 1097
Cdd:TIGR02168 412 -LEDRRERLQQEIEELLKKLEEAELKELQAELE--ELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQ 488
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
397-979 |
3.50e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.56 E-value: 3.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 397 HQLEQEKQRLSKKLQSFAVTERELTLEVERMRLEHGIKRRDkspsRLDTFLKGIEEERDYYKKELEKLQHLIQRRScAIN 476
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELEAELEELEAELE----ELEAELAELEAELEELRLELEELELELEEAQ-AEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 477 YSARekppvvkcSEKGDCSTDVHLITRERDELQRMLERFEKYMEDIQSNVKLLTAERDKLNVLYKEAKEELSTLRKEstn 556
Cdd:COG1196 291 YELL--------AELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAE--- 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 557 stspnhlvscvEKEKERALSELRRITAEKEALREKLKNIQERNAVGKSDLEKTIEHLTYINHQLENEKYELQSKMLMMKE 636
Cdd:COG1196 360 -----------LAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEE 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 637 TVESLENKSKLQAQKLSHVTGDSSHQKTEMTSLRIVSEQLQRSLDDCQHRLSIKRGELESAQEQIKMLEQKLENLSHRmt 716
Cdd:COG1196 429 ALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGF-- 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 717 vqSEETHAMKKTIGVMDKEKDFLQETVDEKTEKIANLQESLLSKEKVIAQLKVTVAEYETSLNQLQETLTTRDREINSLR 796
Cdd:COG1196 507 --LEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRA 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 797 RQLDASHKELDDVGKSREISFKENRRLQDDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKEN 876
Cdd:COG1196 585 RAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTG 664
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 877 KDLLDRFQMLHSRAEDWEVKAQQAEGENSSVRLELLSIDTERRHLRERVDLLEKEIQEHINAHHAYESQISSMAKAMSQL 956
Cdd:COG1196 665 GSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEE 744
|
570 580
....*....|....*....|...
gi 568935809 957 EEELRRHESEKATMLGDVSSLRE 979
Cdd:COG1196 745 EELLEEEALEELPEPPDLEELER 767
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
203-894 |
5.93e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 53.87 E-value: 5.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 203 DNRIQELQEEVQQLQEKLAQMEKGVLDYSKQIELREREIQrlslaldggcspdvlSLETRNKTNEKLIAHLNvqvDFLQQ 282
Cdd:TIGR04523 32 DTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKIN---------------NSNNKIKILEQQIKDLN---DKLKK 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 283 ANKELEKHIQELMETKETVTTEVVNLSNrneklcqelteidqlaqrlerhKEQVLETADKELGEAKKEIKRNLCEMRNLE 362
Cdd:TIGR04523 94 NKDKINKLNSDLSKINSEIKNDKEQKNK----------------------LEVELNKLEKQKKENKKNIDKFLTEIKKKE 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 363 EKMSKLQWELDLSHKEKERLNSEL-LLKSDLETVVHQLEQEKQRLSKKLQSFAVTE------RELTLEVERMR-----LE 430
Cdd:TIGR04523 152 KELEKLNNKYNDLKKQKEELENELnLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKkkiqknKSLESQISELKkqnnqLK 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 431 HGIKRRDKSPSRLDTFLKGIEEERDYYKKELEKLQHLIQRRSCAINYSAREkppvVKCSEKGDCSTDVHLITRERDELQR 510
Cdd:TIGR04523 232 DNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKK----IKELEKQLNQLKSEISDLNNQKEQD 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 511 MLERFEKYMEDIQSNVKLLTAERDKLNVLYKEAKEELSTLRKESTNSTSPNhlvSCVEKEKERALSELRRITAEKEALRE 590
Cdd:TIGR04523 308 WNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESEN---SEKQRELEEKQNEIEKLKKENQSYKQ 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 591 KLKNIQERnavgKSDLEKTIEHLTYINHQLENEKYELQSKMLMMKETVESLENKSKLQAQKLSHVTGDSSHQKTEMTSLR 670
Cdd:TIGR04523 385 EIKNLESQ----INDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLD 460
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 671 IVSEQLQRSLDDCQHRLSIKRGELESAQEQIKMLEQKLENLSHRMTVQSEETHAMKKTIGVMDKEKDFLQETVDEKTEKI 750
Cdd:TIGR04523 461 NTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKI 540
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 751 ANLQESLLSKEKVI--AQLKVTVAEYETSLNQLQETLTTRDREINSLRRQLDASHKELDDVGKSREISFKENRRLQDDLA 828
Cdd:TIGR04523 541 SDLEDELNKDDFELkkENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELE 620
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568935809 829 TMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENKDLLDRFQMLHSRAEDWE 894
Cdd:TIGR04523 621 KAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDWL 686
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
822-1121 |
6.07e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.79 E-value: 6.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 822 RLQDDLATMarENQEISLELEAAVQEK-----EEMKSRVHKYIteVSRWESLMAAKEKENKDLLDrfqmLHSRAEDWEVK 896
Cdd:COG1196 190 RLEDILGEL--ERQLEPLERQAEKAERyrelkEELKELEAELL--LLKLRELEAELEELEAELEE----LEAELEELEAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 897 AQQAEGENSSVRLELLSIDTERRHLRERVDLLEKEIQEHINAHHAYESQISSMAKAMSQLEEELRRHESEKATMLGDVSS 976
Cdd:COG1196 262 LAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 977 LRELCIKLDSGKDVMTQQLNSKSLELERAVAELENVKSESELLKKQLTNERQTIKNLESLLATNRDKEFQSHLTSHEKDT 1056
Cdd:COG1196 342 LEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEE 421
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568935809 1057 EIQLLKEKLNLSESKLTTQSRETSMLRTKVTQLQTDYDNLKRQMSNEKYERIRKDLIEQAQRTAQ 1121
Cdd:COG1196 422 ELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
501-980 |
1.14e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 52.72 E-value: 1.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 501 ITRERDELQRMLERFEKYMEDIQSNVKLLTAERDKLNVLY---KEAKEELSTLRKESTNSTSPNHLVSCVEKEKERALSE 577
Cdd:TIGR04523 164 LKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLsnlKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 578 LRRITAEKEALREKLKNIQERNAVGKSDLEKTIEHLTYINHQLENEKYELQSKMLMMK-------------------ETV 638
Cdd:TIGR04523 244 KTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNnqkeqdwnkelkselknqeKKL 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 639 ESLENKSKLQAQKLSHVTGDSSHQKTEMTSLRIVSEQLQRSLDDCQHRLSIKRGELESAQEQIKMLEQKLENLSHRMTVQ 718
Cdd:TIGR04523 324 EEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQ 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 719 SEETHAMKKTIGVMDKEKDFLQETVDEKTEKIANLQESLLSKEKVIAQLKVTVAEYETSLNQLQETLTTRDREINSLRRQ 798
Cdd:TIGR04523 404 EKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQN 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 799 LDASHKELDDVGKsreisfkenrrlqdDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENKD 878
Cdd:TIGR04523 484 LEQKQKELKSKEK--------------ELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNK 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 879 LLDRFqmlhsRAEDWEVKAQQAEGENSSVRLELLSIDTERRHLRERVDLLEKEIQEHINAHHAYESQISSMAKAMSQLEE 958
Cdd:TIGR04523 550 DDFEL-----KKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKK 624
|
490 500
....*....|....*....|..
gi 568935809 959 ELRRHESEKATMLGDVSSLREL 980
Cdd:TIGR04523 625 ENEKLSSIIKNIKSKKNKLKQE 646
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
570-1041 |
1.75e-06 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 52.13 E-value: 1.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 570 EKERALSELRRITAEKEALREKLKNIQERNAVGKSDLEKT-------------IEHLTYINHQLENEKYELQSKMLMMKE 636
Cdd:pfam10174 189 EAEMQLGHLEVLLDQKEKENIHLREELHRRNQLQPDPAKTkalqtviemkdtkISSLERNIRDLEDEVQMLKTNGLLHTE 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 637 -------TVESLENKSKLQAQKLSHVTGDSSHQKTEMTSLRIVSEQLQRSLDDC-QHRLSIK------------------ 690
Cdd:pfam10174 269 dreeeikQMEVYKSHSKFMKNKIDQLKQELSKKESELLALQTKLETLTNQNSDCkQHIEVLKesltakeqraailqtevd 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 691 --RGELESAQEQIKMLEQKLENLSHRMTVQSEETHAMKKTIGVMDKEKDFLQEtvdekteKIANLQESLLSKEKVIAQLK 768
Cdd:pfam10174 349 alRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQK-------KIENLQEQLRDKDKQLAGLK 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 769 VTVAEYE-------TSLNQLQETLTTRDREINSLRRQLDASHKE-LDDVGKSReisfKENRRLQDDLATMARENQEISLE 840
Cdd:pfam10174 422 ERVKSLQtdssntdTALTTLEEALSEKERIIERLKEQREREDRErLEELESLK----KENKDLKEKVSALQPELTEKESS 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 841 LEAAvqeKEEMKSRVHKYITEVSRWESLMAAKEKEnKDLLDRFQMLHSRAEDWEVKAQQAEGENSSVRLellsIDTERRH 920
Cdd:pfam10174 498 LIDL---KEHASSLASSGLKKDSKLKSLEIAVEQK-KEECSKLENQLKKAHNAEEAVRTNPEINDRIRL----LEQEVAR 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 921 LRERVDLLEKEIQEHINAHHAYESQISSMAKAMSQLEEELRRHESEKATMLGDVSSLRELCIK------LDSGKDVMTQQ 994
Cdd:pfam10174 570 YKEESGKAQAEVERLLGILREVENEKNDKDKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKkgaqllEEARRREDNLA 649
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 568935809 995 LNSKSLELERAVAELENVKSESELLKKQLTNERQTIKNLESLLATNR 1041
Cdd:pfam10174 650 DNSQQLQLEELMGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLR 696
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
740-980 |
3.05e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 3.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 740 QETVDEKTEKIANLQESLLSKEKVIAQLKVTVAEYETSLNQLQETLTTRDREINSLRRQLDASHKELDDVGKSREISFKE 819
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 820 NRRLQDDLATMARENQEISleleaavqekeemksrvhkyitEVSRWESLMAAKEKEnkDLLDRFQMLHSRAEdwevkAQQ 899
Cdd:COG4942 99 LEAQKEELAELLRALYRLG----------------------RQPPLALLLSPEDFL--DAVRRLQYLKYLAP-----ARR 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 900 AEGEnsSVRLELLSIDTERRHLRERVDLLEKEIQEHINAHHAYESQISSMAKAMSQLEEELRRHESEKATMLGDVSSLRE 979
Cdd:COG4942 150 EQAE--ELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
.
gi 568935809 980 L 980
Cdd:COG4942 228 L 228
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
534-1102 |
3.18e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.66 E-value: 3.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 534 DKLNVLYKEAKEELSTL------RKESTNSTSPNHLVSCVEKEKErALSELRRITAEKEALREKLKNIQERNAVGKSDLE 607
Cdd:pfam15921 245 DQLEALKSESQNKIELLlqqhqdRIEQLISEHEVEITGLTEKASS-ARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 608 KTIEHLtyinhqleneKYELQSKMLMMKETVESLENKSKLQAQKLSHVTGDSSHQKTEMTSLrivSEQLQRSLDDCQHRl 687
Cdd:pfam15921 324 STVSQL----------RSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNL---DDQLQKLLADLHKR- 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 688 sikRGELESAQEQIKMLEQK-------LENLSHRMTVQSEETHAMKKTIGVMDKEkdfLQETVDEKTEKIANLQESLLSK 760
Cdd:pfam15921 390 ---EKELSLEKEQNKRLWDRdtgnsitIDHLRRELDDRNMEVQRLEALLKAMKSE---CQGQMERQMAAIQGKNESLEKV 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 761 EKVIAQLKVTvaeyetslnqlQETLTTRDREINSLRRQLDASHKELDDVGKSREisfKENRRLQDDLATMARENQEISLE 840
Cdd:pfam15921 464 SSLTAQLEST-----------KEMLRKVVEELTAKKMTLESSERTVSDLTASLQ---EKERAIEATNAEITKLRSRVDLK 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 841 LEAAVQEKEEmKSRVHKYITEVSRWESLMAAKEKENKDLLDRFQML------HSR-AEDWEVKAQQAEGENSSVRLELLS 913
Cdd:pfam15921 530 LQELQHLKNE-GDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMtqlvgqHGRtAGAMQVEKAQLEKEINDRRLELQE 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 914 I-------DTERRHLRERVDLLEKEIQEHINAHHAYESQISSMAKAMSQLEEELRRHESEKATMLGDVSSL----RELCI 982
Cdd:pfam15921 609 FkilkdkkDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLkrnfRNKSE 688
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 983 KLDSGKDVMTQQLNSKSLELERAVAELENVKSE-------SELLKKQLTNERQTIKNLESLLatnrdKEFQSHLTSHEKd 1055
Cdd:pfam15921 689 EMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSdghamkvAMGMQKQITAKRGQIDALQSKI-----QFLEEAMTNANK- 762
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 568935809 1056 tEIQLLKEKLNLSESKLTTQSRETSMLRTKVTQLQTDYDNLKRQMSN 1102
Cdd:pfam15921 763 -EKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVAN 808
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
586-1095 |
8.83e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 50.22 E-value: 8.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 586 EALREKLKNIQER-NAVGKSDLEKTIEHLTYINHQLENEKyELQSKMLMMKETVESLENKSKLQAQKLSHVTGDSSHQKT 664
Cdd:pfam12128 237 MKIRPEFTKLQQEfNTLESAELRLSHLHFGYKSDETLIAS-RQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADA 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 665 EMTSLR----IVSEQLQRSLDDCQHRLSIKRGELESAQEQIKMLEQKLENLSHRMTVQSEETHAMKKTIG--------VM 732
Cdd:pfam12128 316 AVAKDRseleALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKeqnnrdiaGI 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 733 DKEKDFLQETVDEKTEKIANL---QESLLSKEKVIAQLKVTVAEYETSLNQLQETLTTRDREINS-LRRQLDASHKELDD 808
Cdd:pfam12128 396 KDKLAKIREARDRQLAVAEDDlqaLESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPeLLLQLENFDERIER 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 809 VGKSREISFKENRRLQDDLATM--ARENQEISL--------ELEAAVQEKEEM-----KSRVHKYITEVSRWESLMAAke 873
Cdd:pfam12128 476 AREEQEAANAEVERLQSELRQArkRRDQASEALrqasrrleERQSALDELELQlfpqaGTLLHFLRKEAPDWEQSIGK-- 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 874 kenkdLLDRfQMLHSRAEDWEVKAQQAEGENS--SVRLELLSIDTERRH-----LRERVDLLEKEIQEHINAHHAYESQi 946
Cdd:pfam12128 554 -----VISP-ELLHRTDLDPEVWDGSVGGELNlyGVKLDLKRIDVPEWAaseeeLRERLDKAEEALQSAREKQAAAEEQ- 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 947 ssMAKAMSQLEEELRRHESEKATMLGDVSSLRELCIKLDSGKDVMTQQLNSkslELERAVAELENVKSESELLKKQLTNE 1026
Cdd:pfam12128 627 --LVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAE---RKDSANERLNSLEAQLKQLDKKHQAW 701
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568935809 1027 RQTIKNLESLLATNRDKEFQShlTSHEKDTEIQLLKEKLNLSESKLTTQsretsmlrtkVTQLQTDYDN 1095
Cdd:pfam12128 702 LEEQKEQKREARTEKQAYWQV--VEGALDAQLALLKAAIAARRSGAKAE----------LKALETWYKR 758
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
504-1116 |
9.41e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.06 E-value: 9.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 504 ERDELQRMLERFEKYMEDIQSNVKLLTAERDKLNVLyKEAKEELSTLRKESTNSTSPNHLVSCVEKEKERALSELRRITA 583
Cdd:PRK03918 136 EIDAILESDESREKVVRQILGLDDYENAYKNLGEVI-KEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISS 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 584 EKEALREKLKNIQERnavgKSDLEKTIEHLTYINHQLENEKYELQSKMLMMKETVESLENKsKLQAQKLSHVTGDSSHQK 663
Cdd:PRK03918 215 ELPELREELEKLEKE----VKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEEL-KKEIEELEEKVKELKELK 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 664 TEMTSLRIVSEQLQRSLD---DCQHRLSIKRGELESAQEQIKmleqKLENLSHRMTVQSEETHAMKKTIGVMdKEKDFLQ 740
Cdd:PRK03918 290 EKAEEYIKLSEFYEEYLDelrEIEKRLSRLEEEINGIEERIK----ELEEKEERLEELKKKLKELEKRLEEL-EERHELY 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 741 ETVDEKTEKIANLQESL--LSKEKVIAQLKvtvaEYETSLNQLQETLTTRDREINSLRRQLDASHKELDDVGKSREISFK 818
Cdd:PRK03918 365 EEAKAKKEELERLKKRLtgLTPEKLEKELE----ELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPV 440
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 819 ENRRLQDD-----LATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAakekeNKDLLDRFQMLHSRAEDW 893
Cdd:PRK03918 441 CGRELTEEhrkelLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIK-----LKELAEQLKELEEKLKKY 515
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 894 EVKAQQAEGEnssvrlellsidtERRHLRERVDLLEKEI---QEHINAHHAYEsqissmaKAMSQLEEELRRHESEKATM 970
Cdd:PRK03918 516 NLEELEKKAE-------------EYEKLKEKLIKLKGEIkslKKELEKLEELK-------KKLAELEKKLDELEEELAEL 575
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 971 LGDVSSLRELCIKLDSGKDVMTQQLNSKSLELERAVAELENVKSESELLKKQLTNERQTIKNLESLLATNRdKEFQSHLT 1050
Cdd:PRK03918 576 LKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELR-KELEELEK 654
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568935809 1051 SHEKDTEIQLLKEKLNLSeSKLTTQSRETSMLRTKVTQLQTDYDNLKRQMSNEKYERIRKDLIEQA 1116
Cdd:PRK03918 655 KYSEEEYEELREEYLELS-RELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKA 719
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
175-1025 |
9.48e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.12 E-value: 9.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 175 EPAPPSEVSAYPVPQpedpYIADLLQVADNRIQELQE---EVQQLQEKLA-QMEKGVLDYskQIELREREIQRLSLAldg 250
Cdd:pfam15921 60 ELDSPRKIIAYPGKE----HIERVLEEYSHQVKDLQRrlnESNELHEKQKfYLRQSVIDL--QTKLQEMQMERDAMA--- 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 251 gcspDVLSLETRNKTNEKliahlnvqvdflqqanKELEKHIQELmETKETVTTEVVNLSNrneklcqelTEIDQLAQRLE 330
Cdd:pfam15921 131 ----DIRRRESQSQEDLR----------------NQLQNTVHEL-EAAKCLKEDMLEDSN---------TQIEQLRKMML 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 331 RHKEQVLET----ADKELGEAKKEIKRN---LCEMRNLEEKMSKLQWELDLSHKekerlnselLLKSDLETVVHQLEQEK 403
Cdd:pfam15921 181 SHEGVLQEIrsilVDFEEASGKKIYEHDsmsTMHFRSLGSAISKILRELDTEIS---------YLKGRIFPVEDQLEALK 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 404 QRLSKKLqsfavterELTLEVERMRLEHGIkrrdkspSRLDTFLKGIEEERDYYKKELEKLQHLIQrrscAINYSAREKP 483
Cdd:pfam15921 252 SESQNKI--------ELLLQQHQDRIEQLI-------SEHEVEITGLTEKASSARSQANSIQSQLE----IIQEQARNQN 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 484 PVVKCSEKGDCSTdvhlITRERDELQRMLERFEKYMEDIQSNVKLLTAErdklnvlYKEAKEELSTLRKESTNstspnhl 563
Cdd:pfam15921 313 SMYMRQLSDLEST----VSQLRSELREAKRMYEDKIEELEKQLVLANSE-------LTEARTERDQFSQESGN------- 374
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 564 vscVEKEKERALSELRRITAEKEALREKLKNIQERNaVGKSdleKTIEHLtyiNHQLENEKYELQSKMLMMKETveslen 643
Cdd:pfam15921 375 ---LDDQLQKLLADLHKREKELSLEKEQNKRLWDRD-TGNS---ITIDHL---RRELDDRNMEVQRLEALLKAM------ 438
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 644 KSKLQAQklshvtgdsshQKTEMTSLRIVSEQLQRslddcqhrLSIKRGELESAQEQIKMLEQKLEnlSHRMTVQSEETH 723
Cdd:pfam15921 439 KSECQGQ-----------MERQMAAIQGKNESLEK--------VSSLTAQLESTKEMLRKVVEELT--AKKMTLESSERT 497
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 724 AMKKTIGVMDKEKdflqeTVDEKTEKIANLQESLLSKEKVIAQLKVT---VAEYETSLNQLQETLTTRDREINSLRRQLD 800
Cdd:pfam15921 498 VSDLTASLQEKER-----AIEATNAEITKLRSRVDLKLQELQHLKNEgdhLRNVQTECEALKLQMAEKDKVIEILRQQIE 572
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 801 ASHKELDDVGKSREISFKENRRLQDDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRW-----ESLMAAKE-- 873
Cdd:pfam15921 573 NMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLvnagsERLRAVKDik 652
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 874 KENKDLLDRFQM----LHSRAEDWEV-------KAQQAEGENSSVRLELLSIDTERRHLRERVDLLEKEIQEHINAHHAY 942
Cdd:pfam15921 653 QERDQLLNEVKTsrneLNSLSEDYEVlkrnfrnKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGM 732
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 943 ESQISSMAKAMSQLEEELRRHESEKATMLGDVSSLRElcikldsGKDVMTQQLNSKSLELERAVAELENVKSESELLKKQ 1022
Cdd:pfam15921 733 QKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKE-------EKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEK 805
|
...
gi 568935809 1023 LTN 1025
Cdd:pfam15921 806 VAN 808
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
124-711 |
1.50e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 1.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 124 YVHKVKVLEKESKAKDEKIQQLQEKNLRAVVQTpggRKRNIAFRRQRMQIDEpappsevsaypvpqpedpyIADLLQVAD 203
Cdd:COG1196 230 LLLKLRELEAELEELEAELEELEAELEELEAEL---AELEAELEELRLELEE-------------------LELELEEAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 204 NRIQELQEEVQQLQEKLAQMEKGVLDYSKQIELREREIQRLSLALDgGCSPDVLSLETRNKTNEKLIAHLNVQVDFLQQA 283
Cdd:COG1196 288 AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELE-ELEEELEELEEELEEAEEELEEAEAELAEAEEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 284 NKELEKHIQELMETKETVTTEVVNLSNRNEKLCQELTEIDQLAQRLERHKEQVLETADKELGEAKKEIKRNLCEMRNLEE 363
Cdd:COG1196 367 LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 364 KMSKLQWELDLSHKEKERLNSELLLKSDLETVVHQLEQEKQRLSKKLQSFAVTERELTLEVERMRLEHGIKRRDKSPSRL 443
Cdd:COG1196 447 AAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAV 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 444 DTFLKGIEEERDYYKKELEKLQHLIQRRSC-----AINYSAREKPPVVkcsekgdcsTDVHLITRERDELQRMLERFEKY 518
Cdd:COG1196 527 AVLIGVEAAYEAALEAALAAALQNIVVEDDevaaaAIEYLKAAKAGRA---------TFLPLDKIRARAALAAALARGAI 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 519 MEDIQSNVKLLTAERDKLNVLYKEAKEE-LSTLRKESTNSTSPNHLVSCVEKEKERALSELRRITAEKEAlREKLKNIQE 597
Cdd:COG1196 598 GAAVDLVASDLREADARYYVLGDTLLGRtLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSR-RELLAALLE 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 598 RNAVGKSDLEKTIEHLTYINHQLENEKYELQSKMLMMKETVESLENKSKLQAQKLSHVTGDSSHQKTEMTSLRIVSEQLQ 677
Cdd:COG1196 677 AEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEEL 756
|
570 580 590
....*....|....*....|....*....|....
gi 568935809 678 RSLDDcqhrlsikrgeLESAQEQIKMLEQKLENL 711
Cdd:COG1196 757 PEPPD-----------LEELERELERLEREIEAL 779
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
413-888 |
3.17e-05 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 48.36 E-value: 3.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 413 FAVTERELTLEVERMRlehgikRRDKSPSRLDTFLKGIEEERdyyKKELEKLQHLIQRRSCAINYSAREKPPVVKCSEKG 492
Cdd:PLN02939 23 FYLPSRRRLAVSCRAR------RRGFSSQQKKKRGKNIAPKQ---RSSNSKLQSNTDENGQLENTSLRTVMELPQKSTSS 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 493 DCSTDVHLITRERDELQRMLERFEKYMEDIQ-SNVKLltaerdklnvlykeakEELSTLRKestnSTSPNHLVscVEKEK 571
Cdd:PLN02939 94 DDDHNRASMQRDEAIAAIDNEQQTNSKDGEQlSDFQL----------------EDLVGMIQ----NAEKNILL--LNQAR 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 572 ERALSELRRITAEKEALREKLKNIQER----------NAVGKSDLEKTIEHLTYINHQLENE-------KYELQSKMLMM 634
Cdd:PLN02939 152 LQALEDLEKILTEKEALQGKINILEMRlsetdariklAAQEKIHVEILEEQLEKLRNELLIRgateglcVHSLSKELDVL 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 635 KETVESLENKSKLQAQKLSHVtgdsshQKTEMTSLRIVSEQ--LQRSLDDCQHRLSIKRGE-LESAQEQIKMLEQKLENL 711
Cdd:PLN02939 232 KEENMLLKDDIQFLKAELIEV------AETEERVFKLEKERslLDASLRELESKFIVAQEDvSKLSPLQYDCWWEKVENL 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 712 SHRMtvqSEETHAMKKTIGVMDKEKDfLQETVDEKTEKIANLQESLLSKEKV-IAQLKVTVAEyetslnqlqETLTTRDR 790
Cdd:PLN02939 306 QDLL---DRATNQVEKAALVLDQNQD-LRDKVDKLEASLKEANVSKFSSYKVeLLQQKLKLLE---------ERLQASDH 372
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 791 EINSLRRQLDASHKELDD-VGKSREISfkENRRLQDDLATMAREN-QEISLELEAAVQEKeEMKSRVHKYITEVSR---- 864
Cdd:PLN02939 373 EIHSYIQLYQESIKEFQDtLSKLKEES--KKRSLEHPADDMPSEFwSRILLLIDGWLLEK-KISNNDAKLLREMVWkrdg 449
|
490 500
....*....|....*....|....*.
gi 568935809 865 --WESLMAAKEKENKDLLDRFQMLHS 888
Cdd:PLN02939 450 riREAYLSCKGKNEREAVENFLKLTL 475
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
196-445 |
3.76e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 3.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 196 ADLLQVADNRIQELQEEVQQLQEKLAQMEKGVLDYSKQIELREREIQRLSLALDggcspdvlSLETRNKTNEKLIAHLNV 275
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIR--------ALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 276 QVDFLQQANKELEKHIQEL---METKETVTTEVVNLSNRNeklcqelteIDQLAQRLERHKEqvLETADKELGEakkEIK 352
Cdd:COG4942 91 EIAELRAELEAQKEELAELlraLYRLGRQPPLALLLSPED---------FLDAVRRLQYLKY--LAPARREQAE---ELR 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 353 RNLCEMRNLEEKMSKLQWELDLSHKEKERLNSEL-LLKSDLETVVHQLEQEKQRLSKKLQSFAVTERELTLEVERMRLEH 431
Cdd:COG4942 157 ADLAELAALRAELEAERAELEALLAELEEERAALeALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
250
....*....|....
gi 568935809 432 GIKRRDKSPSRLDT 445
Cdd:COG4942 237 AAAAERTPAAGFAA 250
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
586-1115 |
3.91e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.71 E-value: 3.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 586 EALREKLKNIQERNAVGKSDLEKTIEHLTYINHQLENEKYELQSKMLMMKETVESLENKSKLQAQKLSHVTGDSShqktE 665
Cdd:TIGR04523 78 KILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEK----E 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 666 MTSLRIVSEQLQRSLDDCQHRLSIKRGELESAQEQIKMLEQKLENLSHRMTV---QSEETHAMKKTIGVMDKEKDFLQET 742
Cdd:TIGR04523 154 LEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNlkkKIQKNKSLESQISELKKQNNQLKDN 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 743 VDEKTEKIANLQESLLSKEKVIAQLKVTVAEYETSLNQLQETLTTRDREINSLRRQLDASHKELDDVGKSREISFkeNRR 822
Cdd:TIGR04523 234 IEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDW--NKE 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 823 LQDDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENKDLLDRFQMLHSRAEDWEVKAQQAEG 902
Cdd:TIGR04523 312 LKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLES 391
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 903 ENSSVRLELLSIDTERRHLRERVDLLEKEIQEHINAHHAYESQISSMAKAMSQLEEElrrhESEKATMLGDVSSLRElci 982
Cdd:TIGR04523 392 QINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQ----DSVKELIIKNLDNTRE--- 464
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 983 KLDSGKDVMTQQLNSKSLELERAVAELENVKSESELLKKQLTNERQTIKNLESLLATNRDKEFQSHLTSHEKDTEIQLLK 1062
Cdd:TIGR04523 465 SLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLE 544
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 1063 EKLNLSESKLTTQSRETSM--LRTKVTQLQTDYDNLKRQMSN-----EKYERIRKDLIEQ 1115
Cdd:TIGR04523 545 DELNKDDFELKKENLEKEIdeKNKEIEELKQTQKSLKKKQEEkqeliDQKEKEKKDLIKE 604
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
204-995 |
5.09e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 47.73 E-value: 5.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 204 NRIQELQEEVQQLQEKLAQMEKGVLDYSKQIELREREIQRLS-LALDGGCSPDVLSLETRNKTNEKLIAHLNVQVDFLQQ 282
Cdd:TIGR00606 347 VEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSeRQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQE 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 283 ANKELEKHIQELMETKETvttEVVNLSNRNEKLCQELTEIDQLAQRLER--HKEQVLETADKELGEA---------KKEI 351
Cdd:TIGR00606 427 QADEIRDEKKGLGRTIEL---KKEILEKKQEELKFVIKELQQLEGSSDRilELDQELRKAERELSKAeknsltetlKKEV 503
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 352 KRNLCEMRNLEEKMSKLQWELDLSHKEKERLNSELLLKSDLETVVHQLEQEKQRLSKKLQSFA-VTERELTLEVERMRLE 430
Cdd:TIGR00606 504 KSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLgYFPNKKQLEDWLHSKS 583
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 431 HGIKRRDKSPSRLDTFLKGIEEERDYYKKELEKLQHLIQRRSCAINYSAREKPPVVKCsekGDCSTDVHLITRERDELQR 510
Cdd:TIGR00606 584 KEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDL---ERLKEEIEKSSKQRAMLAG 660
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 511 MLERFEKYMEDIQSNVKLLTAERDKLNVLYKEAKEELSTL----RKESTNSTSPNHLVSCVEKEKERAL-------SELR 579
Cdd:TIGR00606 661 ATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLqsklRLAPDKLKSTESELKKKEKRRDEMLglapgrqSIID 740
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 580 RITAEKEALREKLKNIQERNAVGKSDLEKTIEHLTYINHQLENEKyELQSKMLMMKETVESLENKSKLQAQKLSHVtgDS 659
Cdd:TIGR00606 741 LKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAK-VCLTDVTIMERFQMELKDVERKIAQQAAKL--QG 817
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 660 SHQKTEMTSLRIVSEQLQRSLDDCQHRLSIKRGELESAQEQIKMLEQKLENL-SHRMTVQSEETHAmkktiGVMDKEKDF 738
Cdd:TIGR00606 818 SDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELkSEKLQIGTNLQRR-----QQFEEQLVE 892
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 739 LQETVDEKTEKIANLQESLLSKEKViaqLKVTVAEYETSLNQLQETLTTRDREINSLRRQLDASHKELDDVGKsreisfk 818
Cdd:TIGR00606 893 LSTEVQSLIREIKDAKEQDSPLETF---LEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIEN------- 962
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 819 enrRLQDDLATMARENQEISLELEAAVQEKEEMKSRVHKyitEVSRWESLMAAKEKENKDLLDRFQMLHSRAEDWEVKAQ 898
Cdd:TIGR00606 963 ---KIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINE---DMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEE 1036
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 899 QAEGENSSVRLELLSIDTERRHLRERVDLLEKEIQEHINAHHAYESQISSMAKAMSqlEEELRRHESEKATMLGDVSSLR 978
Cdd:TIGR00606 1037 LKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELR--EPQFRDAEEKYREMMIVMRTTE 1114
|
810
....*....|....*..
gi 568935809 979 ELCIKLDSGKDVMTQQL 995
Cdd:TIGR00606 1115 LVNKDLDIYYKTLDQAI 1131
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
796-1042 |
6.80e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.96 E-value: 6.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 796 RRQLDASHKELDDVGKsrEISFKENRRLQDDLATMARENQEISLELE-------AAVQEKEEMKSRVHKYI--------- 859
Cdd:PRK02224 179 ERVLSDQRGSLDQLKA--QIEEKEEKDLHERLNGLESELAELDEEIEryeeqreQARETRDEADEVLEEHEerreeletl 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 860 -TEVSRWESLMAAKEKENKDLLDRFQMLHSRAEDWEVKAQQAEGENSSVRLELLSIDTERRHLRERVDLLEKEIQEHINA 938
Cdd:PRK02224 257 eAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 939 HHAYESQISSMAKAMSQLEEELRRHESEKATMLGDVSSLRELCIKLDSGKDVMTQQLNSKSLELERAVAELENVKSESEL 1018
Cdd:PRK02224 337 AQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEE 416
|
250 260
....*....|....*....|....
gi 568935809 1019 LKKQLTNERQTIKNLESLLATNRD 1042
Cdd:PRK02224 417 LREERDELREREAELEATLRTARE 440
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
202-412 |
1.01e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.98 E-value: 1.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 202 ADNRIQELQEEVQQLQEKLAQMEKGVLDYSKQIELREREIQRLSLALDggcspdvlSLETRNKTNEKLIAHLNVQVDflq 281
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELE--------ALQAEIDKLQAEIAEAEAEIE--- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 282 QANKELEKHIQELMETKETVTTEVVNLSNRNekLCQELTEIDQLAQRLERHKEQV--LETADKELGEAKKEIKRNLCEMR 359
Cdd:COG3883 83 ERREELGERARALYRSGGSVSYLDVLLGSES--FSDFLDRLSALSKIADADADLLeeLKADKAELEAKKAELEAKLAELE 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 568935809 360 NLEEKMSKLQWELDLSHKEKERlnsellLKSDLETVVHQLEQEKQRLSKKLQS 412
Cdd:COG3883 161 ALKAELEAAKAELEAQQAEQEA------LLAQLSAEEAAAEAQLAELEAELAA 207
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
195-372 |
1.64e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 1.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 195 IADLLQVADNRIQELQEEVQQLQEKLAQMEKGVLDYSKQIELREREIQRLSLALDggcspdvlSLETRNKTNEKLIAHLN 274
Cdd:COG4942 39 LEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA--------ELRAELEAQKEELAELL 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 275 VQ-------------------------VDFLQQANKELEKHIQELMETKETVTTEVVNLSNRNEKLCQELTEIDQLAQRL 329
Cdd:COG4942 111 RAlyrlgrqpplalllspedfldavrrLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAAL 190
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 568935809 330 ERHK---EQVLETADKELGEAKKEIKRNLCEMRNLEEKMSKLQWEL 372
Cdd:COG4942 191 EALKaerQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
204-355 |
1.75e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.53 E-value: 1.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 204 NRIQELQEEVQQLQEKLAQMEKGVLDYSKQIELREREIQRLSLALDggcspDVLSLETRNK------TNEKLIAHLNVQV 277
Cdd:COG1579 24 HRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIE-----EVEARIKKYEeqlgnvRNNKEYEALQKEI 98
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568935809 278 DFLQQANKELEKHIQELMETKETVTTEVVNLSNRNEKLCQELTEIDQLAQRLERHKEQVLETADKELGEAKKEIKRNL 355
Cdd:COG1579 99 ESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIPPEL 176
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
674-882 |
2.20e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 2.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 674 EQLQRSLDDCQHRLSIKRGELESAQEQIKMLEQKLENLSHRMTvqseethAMKKTIGVMDKEKDFLQETVDEKTEKIANL 753
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIA-------ALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 754 QESLLSKEKVIAQLKVTVAEYE-----------TSLNQLQETLTTRDREINSLRRQLDASHKELDDVGKSREisfkENRR 822
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGrqpplalllspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRA----ELEA 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 823 LQDDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENKDLLDR 882
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
740-1103 |
3.97e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 44.71 E-value: 3.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 740 QETVDEKTEKIANLQESLLSKEKVIAQLKVTVAEYETSLNQLQETLTTRDREINSLRRQLDASHKELDDVGKSREISFKE 819
Cdd:pfam05483 232 KKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMST 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 820 NRRLQDDLATMARENQEISLELEAAVQEKEEMKSRVHKYITE----VSRWESLMAAKEKENKDLLDRFQML--HSRAEDW 893
Cdd:pfam05483 312 QKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEfeatTCSLEELLRTEQQRLEKNEDQLKIItmELQKKSS 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 894 EVKAQQAEGENSSVRLE-----------LLSIDTERRHLRERVDLLEKEIQEHINAH----HAYESQISSMAKAMSQLEE 958
Cdd:pfam05483 392 ELEEMTKFKNNKEVELEelkkilaedekLLDEKKQFEKIAEELKGKEQELIFLLQARekeiHDLEIQLTAIKTSEEHYLK 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 959 ELRRHESEKATMLGDVSSLRELCIKLDSGKDVMTQQLNSKSLELERAVAELENVKSESELLKKQLTNERQTIKNLESLLA 1038
Cdd:pfam05483 472 EVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELE 551
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568935809 1039 TNRDKEFQSHltshekdteiQLLKEKLNLSESKLTTQSRETSMLRTKVTQLQTDYDNLKRQMSNE 1103
Cdd:pfam05483 552 SVREEFIQKG----------DEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENK 606
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
205-453 |
4.03e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 4.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 205 RIQELQEEVQQLQEklaqMEKGVLDYSKQIELREReIQRLSLALDggcspdvlSLETRNKTNEKLIAHLNVQvdFLQQAN 284
Cdd:COG4913 226 AADALVEHFDDLER----AHEALEDAREQIELLEP-IRELAERYA--------AARERLAELEYLRAALRLW--FAQRRL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 285 KELEKHIQELMETKETVTTEVVNLSNRNEKLcqeLTEIDQLAQRLERHKEQVLETADKE---LGEAKKEIKRNLcemRNL 361
Cdd:COG4913 291 ELLEAELEELRAELARLEAELERLEARLDAL---REELDELEAQIRGNGGDRLEQLEREierLERELEERERRR---ARL 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 362 EEKMSKLQWELDLSHKEKERLNSEL-LLKSDLETVVHQLEQEKQRLSKKLQSFAVTERELTLEVERMRlehgiKRRDKSP 440
Cdd:COG4913 365 EALLAALGLPLPASAEEFAALRAEAaALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLE-----RRKSNIP 439
|
250
....*....|...
gi 568935809 441 SRLDTFLKGIEEE 453
Cdd:COG4913 440 ARLLALRDALAEA 452
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
569-805 |
5.01e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 5.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 569 KEKERALSELRRITAEKEALREKLKNIQERNAVGKSDLEKTIEHLTYINHQLENEKYELQSKMLMMKETVESLENKSKLQ 648
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 649 AQKLSHVTGDSSHQKTEMTSLRIVSeqlQRSLDDCQHRLSIKRGELESAQEQIKMLEQKLENLShrmtvqseethAMKKT 728
Cdd:COG4942 103 KEELAELLRALYRLGRQPPLALLLS---PEDFLDAVRRLQYLKYLAPARREQAEELRADLAELA-----------ALRAE 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568935809 729 IgvmDKEKDFLQETVDEKTEKIANLQESLLSKEKVIAQLKVTVAEYETSLNQLQETLTTRDREINSLRRQLDASHKE 805
Cdd:COG4942 169 L---EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
696-882 |
5.16e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.67 E-value: 5.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 696 SAQEQIKMLEQKLENLSHRMTVQSEETHAMKKTIGVMDKEKDFLQETVDEKTEKIANLQESLLSKEKVIAQLKVTVAE-- 773
Cdd:COG3883 13 FADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEra 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 774 ---YET--SLNQLQETLTTRD-----REINSLRRQLDASHKELDDVGKSREISFKENRRLQDDLATMARENQEISLELEA 843
Cdd:COG3883 93 ralYRSggSVSYLDVLLGSESfsdflDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAE 172
|
170 180 190
....*....|....*....|....*....|....*....
gi 568935809 844 AVQEKEEMKSRVHKYITEVSRWESLMAAKEKENKDLLDR 882
Cdd:COG3883 173 LEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
569-968 |
5.22e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 5.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 569 KEKERALSELRRITAEKEALREKLKNIQERNAVGKSDLEKTIEHLTYinHQLENEKYELQSKMLMMKETVESLENKSKLQ 648
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL--LPLYQELEALEAELAELPERLEELEERLEEL 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 649 AQklshvtgdsshQKTEMTSLRIVSEQLQRSLDDCQHRLSI-KRGELESAQEQIKMLEQKLENLSHRMTVQSEETHAMKK 727
Cdd:COG4717 159 RE-----------LEEELEELEAELAELQEELEELLEQLSLaTEEELQDLAEELEELQQRLAELEEELEEAQEELEELEE 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 728 TIG--VMDKEKDFLQETVDEKTE--KIANLQESLLSKEKVIAQLKVTVAEYETSLNQLQETLTTRdreinsLRRQLDASH 803
Cdd:COG4717 228 ELEqlENELEAAALEERLKEARLllLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLL------LAREKASLG 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 804 KELDDVGKSREISFKENRRLQDDLAtmarenqEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMA-----AKEKENKD 878
Cdd:COG4717 302 KEAEELQALPALEELEEEELEELLA-------ALGLPPDLSPEELLELLDRIEELQELLREAEELEEelqleELEQEIAA 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 879 LLDRFQM-----LHSRAEDWEvKAQQAEGENSSVRLELLSIDTERRHLRERVDL--LEKEIQEHINAHHAYESQISSMAK 951
Cdd:COG4717 375 LLAEAGVedeeeLRAALEQAE-EYQELKEELEELEEQLEELLGELEELLEALDEeeLEEELEELEEELEELEEELEELRE 453
|
410
....*....|....*..
gi 568935809 952 AMSQLEEELRRHESEKA 968
Cdd:COG4717 454 ELAELEAELEQLEEDGE 470
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
639-844 |
5.71e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 5.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 639 ESLENKSKLQAQKLSHVTGDSSHQKTEMTSLRIVSEQLQRSLDDCQHRLSIKRGELESAQEQIKMLEQKLENLSHRMT-- 716
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAel 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 717 ----------------VQSEETHAMKKTIGVMDKEKDFLQETVDEKTEKIANLQESLLSKEKVIAQLKVTVAEYETSLNQ 780
Cdd:COG4942 110 lralyrlgrqpplallLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAA 189
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568935809 781 LQETLTTRDREINSLRRQLDASHKELDDVGKSREisfkenrRLQDDLATMARENQEISLELEAA 844
Cdd:COG4942 190 LEALKAERQKLLARLEKELAELAAELAELQQEAE-------ELEALIARLEAEAAAAAERTPAA 246
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
759-1008 |
7.90e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.28 E-value: 7.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 759 SKEKVIAQLKVTVAEYETSLNQLQETLTTRDREINSLRRQLDASHKELDDVGKSREISFKENRRLQDDLATMARENQEIS 838
Cdd:COG3883 20 AKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSG 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 839 leleaavqekeemksrvhkyiTEVSRWESLMAAKEKEnkDLLDRFQML-----HSRAEDWEVKAQQAEgenssvrlells 913
Cdd:COG3883 100 ---------------------GSVSYLDVLLGSESFS--DFLDRLSALskiadADADLLEELKADKAE------------ 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 914 IDTERRHLRERVDLLEKEIQEHINAHHAYESQISSMAKAMSQLEEELRRHESEKATMLGDVSSLRELCIKLDSGKDVMTQ 993
Cdd:COG3883 145 LEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAA 224
|
250
....*....|....*
gi 568935809 994 QLNSKSLELERAVAE 1008
Cdd:COG3883 225 AAAAAAAAAAAAAAA 239
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
718-959 |
7.94e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 7.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 718 QSEETHAMKKTIGVMDKEKDFLQETVDEKTEKIANLQESLLSKEKVIAQLKVTVAEYETSLNQLQETLTTRDREINSLRR 797
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 798 QLDASHKELDDVgksreisfkenrrlqddLATMARENQEISLELEAAVQEKEEMKSRVHkYITEVSRW-ESLMAAKEKEN 876
Cdd:COG4942 98 ELEAQKEELAEL-----------------LRALYRLGRQPPLALLLSPEDFLDAVRRLQ-YLKYLAPArREQAEELRADL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 877 KDLLDRFQMLHSRAEDWEVKAQQAEGENSSVRLELLSIDTERRHLRERVDLLEKEIQEHINAHHAYESQISSMAKAMSQL 956
Cdd:COG4942 160 AELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
...
gi 568935809 957 EEE 959
Cdd:COG4942 240 AER 242
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
359-638 |
9.13e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 43.38 E-value: 9.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 359 RNLEEKMSKLQwELDLSHKE--KERLNSELLLKsdletvVHQLEQEKQRLSKKLQSFA---VTERELTLEVERMRLEHGI 433
Cdd:PRK05771 16 SYKDEVLEALH-ELGVVHIEdlKEELSNERLRK------LRSLLTKLSEALDKLRSYLpklNPLREEKKKVSVKSLEELI 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 434 KRRDKSPSRLDTFLKGIEEERDYYKKELEKLQHLIQRRSCAINYSarekPPVVKcsEKGDCSTDVHLITRERDELQRMLE 513
Cdd:PRK05771 89 KDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGNFD----LDLSL--LLGFKYVSVFVGTVPEDKLEELKL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 514 RFEKYMEDIQSNVK-----LLTAERDKLNVLYKEAKEeLSTLRKESTNSTSPNHLVScvekekeRALSELRRITAEKEAL 588
Cdd:PRK05771 163 ESDVENVEYISTDKgyvyvVVVVLKELSDEVEEELKK-LGFERLELEEEGTPSELIR-------EIKEELEEIEKERESL 234
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 568935809 589 REKLKNIQERNAvgksDLEKTIEHLTYInhqlENEKYELQSKMLMMKETV 638
Cdd:PRK05771 235 LEELKELAKKYL----EELLALYEYLEI----ELERAEALSKFLKTDKTF 276
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
199-386 |
9.40e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 9.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 199 LQVADNRIQELQEEVQQLQEKLAQMEKGVLDYSKQIELREREIqrlslaldggcspDVLSLETRnktneklIAHLNVQVD 278
Cdd:COG4913 619 LAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEI-------------DVASAERE-------IAELEAELE 678
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 279 FLQQAN---KELEKHIQELMETKETVTTEVVNLSNRNEKLCQELTEIDQLAQRLERHKEQVLETADKELGEAKKEIKRNL 355
Cdd:COG4913 679 RLDASSddlAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAA 758
|
170 180 190
....*....|....*....|....*....|.
gi 568935809 356 CEMRNLEEKMSKLQWELDLSHKEKERLNSEL 386
Cdd:COG4913 759 LGDAVERELRENLEERIDALRARLNRAEEEL 789
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
334-891 |
1.04e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 43.35 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 334 EQVLETADKELGEAKKEIKRNLCEMRNLEEKMSKLQWELDLSHKEKERLNSELLLKSDLETVVHQLEQEKQRLSKKLQSF 413
Cdd:PRK01156 189 EEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSME 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 414 AVTERELT-LEVERMRLEHgikrrdkspsrlDTFLKGIEEERDY--YKKELEKLQHLIQRRSCAIN-YSAREKppvvKCS 489
Cdd:PRK01156 269 LEKNNYYKeLEERHMKIIN------------DPVYKNRNYINDYfkYKNDIENKKQILSNIDAEINkYHAIIK----KLS 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 490 EKGDCSTDVHLITRERDELQRMLERFEKYMEDIQSNVKLLTAERDKLNVLYKEAK----EELSTLRKESTNSTSPNHLVS 565
Cdd:PRK01156 333 VLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIErmsaFISEILKIQEIDPDAIKKELN 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 566 CVEKEKERALSELRRITAEKEALREKLKNIQERNAV----------GKSDLEKTIEHLtyINHqLENEKYELQSKMLMMK 635
Cdd:PRK01156 413 EINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMlngqsvcpvcGTTLGEEKSNHI--INH-YNEKKSRLEEKIREIE 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 636 ETVESLENKSKLQAQKLSHV-TGDSSHQKTEMTSLRIVSEQLQRSLDDcQHRLSIKRGELESAQEQIKMLeqKLENLSHR 714
Cdd:PRK01156 490 IEVKDIDEKIVDLKKRKEYLeSEEINKSINEYNKIESARADLEDIKIK-INELKDKHDKYEEIKNRYKSL--KLEDLDSK 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 715 MTvqseETHAMKKTIGVMDKEKdfLQETVDEKTEKIANLQESLLSKEKVIAQLKVTVAEYETSLNQLQETLTTRDREINS 794
Cdd:PRK01156 567 RT----SWLNALAVISLIDIET--NRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQE 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 795 LRRQLDASHKELDDVGKsrEISFKENRrlQDDLATMARENQEISLELeaavqekEEMKSRVHKYITEVSRWESLMAAKEK 874
Cdd:PRK01156 641 NKILIEKLRGKIDNYKK--QIAEIDSI--IPDLKEITSRINDIEDNL-------KKSRKALDDAKANRARLESTIEILRT 709
|
570
....*....|....*..
gi 568935809 875 ENKDLLDRFQMLHSRAE 891
Cdd:PRK01156 710 RINELSDRINDINETLE 726
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
704-823 |
1.17e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.92 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 704 LEQKLENLSHRMTVQSEEThaMKKTIGVMDKEKDFLQETVDEKTEKIANLQESLLSKEKVIAQLKVTVAEYETSLNQLQE 783
Cdd:COG2433 378 IEEALEELIEKELPEEEPE--AEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARS 455
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 568935809 784 TLTT---RDREINSLRRQLDASHKELDDVGKSREISFKENRRL 823
Cdd:COG2433 456 EERReirKDREISRLDREIERLERELEEERERIEELKRKLERL 498
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
674-875 |
1.36e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 674 EQLQRSLDDCQHRLSIKRGELESAQEQIKMLEQKLENLSHRMTVQSEETHAMKKTIGVMDKEKDFLQETVDEKTEKIANL 753
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAEL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 754 ------------------QESLLSKEKVIAQLKVTVAEYETSLNQLQETLTtrdrEINSLRRQLDASHKELDDVGKSREi 815
Cdd:COG4942 110 lralyrlgrqpplalllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLA----ELAALRAELEAERAELEALLAELE- 184
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 816 sfKENRRLQDDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKE 875
Cdd:COG4942 185 --EERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
265-471 |
1.45e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 1.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 265 TNEKLIAHLNVQVDFLQQANKELEKHIQELmETKETVTTEVVNLSNRNEKLCQELTEIDQLAQRLERHKEQV--LETADK 342
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEAL-EAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELerLDASSD 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 343 ELGEAKKEIKRnlcemrnLEEKMSKLQWELDLSHKEKERLNSELllksdletvvHQLEQEKQRLSKKLQSFAVTER-ELT 421
Cdd:COG4913 686 DLAALEEQLEE-------LEAELEELEEELDELKGEIGRLEKEL----------EQAEEELDELQDRLEAAEDLARlELR 748
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 568935809 422 LEVERMRLEHGIKRRDKSPSR-LDTFLKGIEEERDYYKKELEKLQHLIQRR 471
Cdd:COG4913 749 ALLEERFAAALGDAVERELREnLEERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
662-847 |
1.86e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.12 E-value: 1.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 662 QKTEMTSLRIVSEQLQRSLDDCQHRLSIKRGELESAQEQIKMLEQKLENLSHRMTVQSEETHAMKKTIG----------- 730
Cdd:COG3883 21 KQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGeraralyrsgg 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 731 --------------------------VMDKEKDFLQETVDEKtEKIANLQESLlskEKVIAQLKVTVAEYETSLNQLQET 784
Cdd:COG3883 101 svsyldvllgsesfsdfldrlsalskIADADADLLEELKADK-AELEAKKAEL---EAKLAELEALKAELEAAKAELEAQ 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568935809 785 LTTRDREINSLRRQLDASHKELDDVGKSREISFKENRRLQDDLATMARENQEISLELEAAVQE 847
Cdd:COG3883 177 QAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 239
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
362-1034 |
1.97e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.47 E-value: 1.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 362 EEKMSKLQWELDLSHKEKERLNSELllkSDLETVVHQLEQEKQRLSKKLQsfavTERELTLEVERMRLEHGIKrrdksps 441
Cdd:pfam01576 4 EEEMQAKEEELQKVKERQQKAESEL---KELEKKHQQLCEEKNALQEQLQ----AETELCAEAEEMRARLAAR------- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 442 rldtflkgieeerdyyKKELEKLQHLIQRRscainysarekppvvkCSEKGDCSTDVHlitRERDELQRMLERFEKYMED 521
Cdd:pfam01576 70 ----------------KQELEEILHELESR----------------LEEEEERSQQLQ---NEKKKMQQHIQDLEEQLDE 114
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 522 IQSNVKLLTAERDKLNVLYKEAKEELSTLRKEstnstspNHLVSCVEKEKERALSELRRITAEKEALREKLKNIQERNAV 601
Cdd:pfam01576 115 EEAARQKLQLEKVTTEAKIKKLEEDILLLEDQ-------NSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEA 187
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 602 GKSDL-------EKTIEHLTYINHQLENEKYELQSKMLMMKETVESLENKSKLQAQKLSHVTGDSSHQKTEMTSLRIVSE 674
Cdd:pfam01576 188 MISDLeerlkkeEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIR 267
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 675 QLQRSLDDCQHRLSIKRGELESAQEQIKMLEQKLENLshrmtvqseethamkktigvmdkeKDFLQETVDekteKIANLQ 754
Cdd:pfam01576 268 ELEAQISELQEDLESERAARNKAEKQRRDLGEELEAL------------------------KTELEDTLD----TTAAQQ 319
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 755 ESLLSKEKVIAQLKVTVAEYETSLN-QLQETLTTRDREINSLRRQLDASHKELDDVGKSREISFKENRRLQDDLATMARE 833
Cdd:pfam01576 320 ELRSKREQEVTELKKALEEETRSHEaQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQA 399
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 834 NQEIS---LELEAAVQE-----------KEEMKSRVHKYITEVSRWESLMAAKEKENKDLLDRFQMLHSRAEDWEVKAQQ 899
Cdd:pfam01576 400 KQDSEhkrKKLEGQLQElqarlseserqRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQE 479
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 900 AEGENSSVRLELLSIDTERRHLRERVDllekeiqEHINAHHAYESQISSMAKAMSQLEEELRRhesekatMLGDVSSLRE 979
Cdd:pfam01576 480 ETRQKLNLSTRLRQLEDERNSLQEQLE-------EEEEAKRNVERQLSTLQAQLSDMKKKLEE-------DAGTLEALEE 545
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*
gi 568935809 980 LCIKLDSGKDVMTQQLNSKSLELERAVAELENVKSESELLKKQLTNERQTIKNLE 1034
Cdd:pfam01576 546 GKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLE 600
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
500-1038 |
2.25e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.36 E-value: 2.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 500 LITRERDELQRMLERFEKYMEDIQSNVKLLTA---ERDKLNVLYKEAKEELSTLRKESTNSTSPNHLVSCVEKEKERALS 576
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENIEELIKEKEKELEEvlrEINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEG 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 577 ELRRITAEKEALREKLKNIQERnavgKSDLEKTIEHLTYINhqlenEKYELQSKMLMMKETVESLENKSKLQAQKLSHVT 656
Cdd:PRK03918 253 SKRKLEEKIRELEERIEELKKE----IEELEEKVKELKELK-----EKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEI 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 657 GDSSHQKTEMTSLRIVSEQLQRSLDDCQHRLSIKRGELEsAQEQIKMLEQKLENLSHRMTVQSEEThaMKKTIGVMDKEK 736
Cdd:PRK03918 324 NGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHE-LYEEAKAKKEELERLKKRLTGLTPEK--LEKELEELEKAK 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 737 DFLQETVDEKTEKIANLQESLLSKEKVIAQLKVT-------------------VAEYETSLNQLQETLTTRDREINSLRR 797
Cdd:PRK03918 401 EEIEEEISKITARIGELKKEIKELKKAIEELKKAkgkcpvcgrelteehrkelLEEYTAELKRIEKELKEIEEKERKLRK 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 798 QLDASHKELddvgkSREISFKENRRLQDDLATMARENQEISLE-LEAAVQEKEEMKSRVHKYITEVSR----------WE 866
Cdd:PRK03918 481 ELRELEKVL-----KKESELIKLKELAEQLKELEEKLKKYNLEeLEKKAEEYEKLKEKLIKLKGEIKSlkkelekleeLK 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 867 SLMAAKEKENKDLLDRFQMLHSRAEDW------EVKAQQAEGENSSVR-LELLSIDTERRHLRERVDLLEKEIQEHINAH 939
Cdd:PRK03918 556 KKLAELEKKLDELEEELAELLKELEELgfesveELEERLKELEPFYNEyLELKDAEKELEREEKELKKLEEELDKAFEEL 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 940 HAYESQISSMAKAMSQL-----EEELRRHESEKATMLGDVSSLRELCIKLDSGKDVMTQQLNskslELERAVAELENVKS 1014
Cdd:PRK03918 636 AETEKRLEELRKELEELekkysEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLE----KLKEELEEREKAKK 711
|
570 580
....*....|....*....|....*..
gi 568935809 1015 ESELLKK---QLTNERQTIKNLESLLA 1038
Cdd:PRK03918 712 ELEKLEKaleRVEELREKVKKYKALLK 738
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
264-1072 |
2.29e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 42.27 E-value: 2.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 264 KTNEKLIAHLNVQVDFLQQANKELEKHIQELMETKETVTTEVVNLSNRNEKLCQELTEIDQLAQRLERHKEQVLETADKE 343
Cdd:pfam02463 180 EETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 344 LGEAKKEIKRNLCEMRNLEEKMSKLQWELDLSHKEKERLNSELLL------KSDLETVVHQLEQEKQRLSKKLQSFAVTE 417
Cdd:pfam02463 260 IEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKlerrkvDDEEKLKESEKEKKKAEKELKKEKEEIEE 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 418 RELTLEVERMRLEHGIKRRDKSPSRLDTFLKGIEEERDYYKKELEKLQHLIQRRSCAINYSAREKPPVVKCSEKGDcstd 497
Cdd:pfam02463 340 LEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELAR---- 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 498 vHLITRERDELQRMLERFEKYMEDIQSNVKLLTAERDKLNVLYKEAKEELSTLRKESTNSTSPNHLVSCVEKEKERALSE 577
Cdd:pfam02463 416 -QLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQK 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 578 LRRITAEKEALREKLKNIQERNAVGKSDLEKTIEHLTYINHQLEnekyELQSKMLMMKETVESLENKSKLQAQKLSHVTG 657
Cdd:pfam02463 495 LEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAV----ENYKVAISTAVIVEVSATADEVEERQKLVRAL 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 658 DSSHQKTEMTSLRIVSEQLQRSLDDCQHRLSIKRGELESAQEQIKMLEQKLENL----SHRMTVQSEETHAMKKTIGVMD 733
Cdd:pfam02463 571 TELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVvegiLKDTELTKLKESAKAKESGLRK 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 734 KEKDFLQETVDEKTEKIANLQESLLSKEKVIAQLKVTVAEYETSLNQLQETLTTRDREINSLRRQLDAshKELDDVGKSR 813
Cdd:pfam02463 651 GVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLE--AEELLADRVQ 728
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 814 EISFKENRRLQDDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENKDLLDRFQMLHSRAEDW 893
Cdd:pfam02463 729 EAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEE 808
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 894 EVKAQQAEGENSSVRLELLSIDTERRHLRERVDLLEKEIQEHINAHHAYESQissmakaMSQLEEELRRHESEKATMLGD 973
Cdd:pfam02463 809 ELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLE-------EEITKEELLQELLLKEEELEE 881
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 974 VSSLRELCIKLDsgKDVMTQQLNSKSLELERAVAELENVKSESELLKKQLTNERQTiKNLESLLATNRDKEFQSHLTSHE 1053
Cdd:pfam02463 882 QKLKDELESKEE--KEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEE-EPEELLLEEADEKEKEENNKEEE 958
|
810
....*....|....*....
gi 568935809 1054 KDTEIQLLKEKLNLSESKL 1072
Cdd:pfam02463 959 EERNKRLLLAKEELGKVNL 977
|
|
| HAP1_N |
pfam04849 |
HAP1 N-terminal conserved region; This family represents an N-terminal conserved region found ... |
207-423 |
2.60e-03 |
|
HAP1 N-terminal conserved region; This family represents an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologs. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntington's disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34.
Pssm-ID: 461455 [Multi-domain] Cd Length: 309 Bit Score: 41.16 E-value: 2.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 207 QELQEEVQQLQEKLAQMEKGVLDYSKQIELREREIQRLSLALDGGCSPDVLSLETRNKtNEKLIAHLNVQVDFLQQANKE 286
Cdd:pfam04849 97 SVLTERNEALEEQLGSAREEILQLRHELSKKDDLLQIYSNDAEESETESSCSTPLRRN-ESFSSLHGCVQLDALQEKLRG 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 287 LEKhiqelmetketvttevvnlsnRNEKLCQELTEIDQLAQRLERHKEQVLETADKELGEAKKEIKrnlcemrNLEEKMS 366
Cdd:pfam04849 176 LEE---------------------ENLKLRSEASHLKTETDTYEEKEQQLMSDCVEQLSEANQQMA-------ELSEELA 227
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 568935809 367 KLQWELDLSHKEKERLNSELLlksDLETVVHQLEQEKQRLSKKLQSFAVTERELTLE 423
Cdd:pfam04849 228 RKMEENLRQQEEITSLLAQIV---DLQHKCKELGIENEELQQHLQASKEAQRQLTSE 281
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
914-1121 |
2.95e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 2.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 914 IDTERRHLRERVDLLEKEIQEHINAHH--AYESQISSMAKAMSQLEEELRRHESEKATMLGDVSSLRElciKLDSGKDVM 991
Cdd:COG3206 180 LEEQLPELRKELEEAEAALEEFRQKNGlvDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRA---QLGSGPDAL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 992 TQQLNSKslELERAVAELENVKSESELLKKQLTNERQTIKNLESLLATNR---DKEFQSHLTSHEKDTEIQLLKEK-LNL 1067
Cdd:COG3206 257 PELLQSP--VIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRaqlQQEAQRILASLEAELEALQAREAsLQA 334
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 568935809 1068 SESKLTTQSRETSMLRTKVTQLQTDYDNLKRQMSN--EKYERIRkdlIEQAQRTAQ 1121
Cdd:COG3206 335 QLAQLEARLAELPELEAELRRLEREVEVARELYESllQRLEEAR---LAEALTVGN 387
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
674-1116 |
3.41e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.43 E-value: 3.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 674 EQLQRSLDDCQHRLSIKRGELESAQEQIKMLEQKLENLS---HRMTVQSEETHAMKKTIGVMDKEKDFLQETV------D 744
Cdd:PRK01156 200 ENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKsalNELSSLEDMKNRYESEIKTAESDLSMELEKNnyykelE 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 745 EKTEKIAN---------------LQESLLSKEKVIAQLKVTVAEYETSLNQLQETLTTRDREINSLRRQLDASHK----- 804
Cdd:PRK01156 280 ERHMKIINdpvyknrnyindyfkYKNDIENKKQILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKSRYDDLNNQilele 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 805 --ELDDVGKSREISFK------ENRRLQDDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKEN 876
Cdd:PRK01156 360 gyEMDYNSYLKSIESLkkkieeYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENL 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 877 KDLLDRFQMLHSRA------------------EDWEVKAQQAEGENSSVRLELLSIDTERRHLRERVDLLE-KEIQEHIN 937
Cdd:PRK01156 440 DELSRNMEMLNGQSvcpvcgttlgeeksnhiiNHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLEsEEINKSIN 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 938 AHHAYESQISSMAKAMSQLEEELRRH-------ESEKATMLGDVSSLRELCIK------------LDSGKDVMTQQLN-- 996
Cdd:PRK01156 520 EYNKIESARADLEDIKIKINELKDKHdkyeeikNRYKSLKLEDLDSKRTSWLNalavislidietNRSRSNEIKKQLNdl 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 997 -------------------SKSLELERAVAELENVKSESELLKKQLTNERQTIKNLESLLATNRDKE-FQSHLTSHEKDT 1056
Cdd:PRK01156 600 esrlqeieigfpddksyidKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIpDLKEITSRINDI 679
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 1057 EiqllkEKLNLSESKLTTQSRETSMLRTKVTQLQTDYDNLKRQMSNEKYERIRKDLIEQA 1116
Cdd:PRK01156 680 E-----DNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKKIKKA 734
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
194-423 |
3.71e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 3.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 194 YIADLLQV----ADNRIQELQEEVQQLQEKLAQMEKGVLDYskqielREREiqrlslaldggcspDVLSLETRNKTNEKL 269
Cdd:COG3206 161 YLEQNLELrreeARKALEFLEEQLPELRKELEEAEAALEEF------RQKN--------------GLVDLSEEAKLLLQQ 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 270 IAHLNVQVDFLQQANKELEKHIQELMETKETVTTEVVNLSN--RNEKLCQELTEID-QLAQRLERHKEQ--VLETADKEL 344
Cdd:COG3206 221 LSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQspVIQQLRAQLAELEaELAELSARYTPNhpDVIALRAQI 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 345 GEAKKEIKRNLCE-MRNLEEKMSKLQWELDLSHKEKERLNSELLLKSDLETVVHQLEQEKQRLSKKLQSFAVTERELTLE 423
Cdd:COG3206 301 AALRAQLQQEAQRiLASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLA 380
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
280-492 |
3.75e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 3.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 280 LQQANKELEKHIQELMETKETVTTEVVNLSNRNEKLCQEL----TEIDQLAQRLERHKEQvLETADKELGEAKKEIKRNL 355
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIraleQELAALEAELAELEKE-IAELRAELEAQKEELAELL 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 356 CEM---------------RNLEEKMSKLQWELDLSHKEKERLNSELLLKSDLETVVHQLEQEKQRLSKKLQsfavterel 420
Cdd:COG4942 111 RALyrlgrqpplalllspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLA--------- 181
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568935809 421 TLEVERMRLEHGIKRRDKSPSRLDTFLKGIEEERDYYKKELEKLQHLIQRRSCAINYSAREKPPVVKCSEKG 492
Cdd:COG4942 182 ELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKG 253
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
317-894 |
3.80e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.56 E-value: 3.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 317 QELTEIDQLAQRLERHKEQVLETADkELGEAKKEIKRNLCEMRNLEEKMSKLQWELDLSHKEKERLNSELllkSDLETVV 396
Cdd:PRK02224 213 SELAELDEEIERYEEQREQARETRD-EADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEV---RDLRERL 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 397 HQLEQEKqrlskklqsfavTERELTLEVERMRLEHGIKRRDKSPSRLDTFLKGIEEERdyykkeLEKLQHLIQRRSCAIN 476
Cdd:PRK02224 289 EELEEER------------DDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECR------VAAQAHNEEAESLRED 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 477 YSAREKPPVVKCSEKGDCSTDVHLITRERDELQRMLERFEKYMEDIQSNVKLLTAERDKLNVLYKEAKEELSTLRKEstn 556
Cdd:PRK02224 351 ADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRER--- 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 557 stspnhlvscvEKEKERALSELRRITAEKEALREKLKNIQERNAVGKSDLEKTIEhltyinhQLENEKYELQSKMLMMKE 636
Cdd:PRK02224 428 -----------EAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIE-------EDRERVEELEAELEDLEE 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 637 TVESLENKSKlQAQKLshvtgdsSHQKTEMTSLRIVSEQLQRSLDDCQHRLSIKRGELESAQEQIKMLEQKLENLSHRMT 716
Cdd:PRK02224 490 EVEEVEERLE-RAEDL-------VEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAA 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 717 VQSEETHAMKKTIGVMDKEkdflQETVDEKTEKIANLQESLlskekviaqlkVTVAEYETSLNQLQETLTTRDrEINSLR 796
Cdd:PRK02224 562 EAEEEAEEAREEVAELNSK----LAELKERIESLERIRTLL-----------AAIADAEDEIERLREKREALA-ELNDER 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 797 RQldaSHKELDDVGKSREISFKENR--RLQDDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLmAAKEK 874
Cdd:PRK02224 626 RE---RLAEKRERKRELEAEFDEARieEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEEL-RERRE 701
|
570 580
....*....|....*....|
gi 568935809 875 ENKDLLDRFQMLHSRAEDWE 894
Cdd:PRK02224 702 ALENRVEALEALYDEAEELE 721
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
325-468 |
4.08e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.38 E-value: 4.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 325 LAQRLERHKEQVLETADKELGEAKKEIKRNLCEMrnlEEKMSKLQweldlshKEKERLNSElllKSDLETVVHQLEQEKQ 404
Cdd:COG2433 378 IEEALEELIEKELPEEEPEAEREKEHEERELTEE---EEEIRRLE-------EQVERLEAE---VEELEAELEEKDERIE 444
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568935809 405 RLSKKLQSFAVTEREltleveRMRLEHGIKRRDKSPSRLDTFLKGIEEERDYYKKELEKLQHLI 468
Cdd:COG2433 445 RLERELSEARSEERR------EIRKDREISRLDREIERLERELEEERERIEELKRKLERLKELW 502
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
177-353 |
4.32e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.97 E-value: 4.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 177 APPSEVSAYPVPQPEDPYIADL----------LQVADNRIQELQEEVQQLQEKLAQMEKGVLDYSKQIELREREIQRLSL 246
Cdd:COG3883 7 AAPTPAFADPQIQAKQKELSELqaeleaaqaeLDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERRE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 247 ALD--------GGCSPDVLS----------LETRNKTNEKLIAHLNVQVDFLQQANKELEKHIQELMETKETVTTEVVNL 308
Cdd:COG3883 87 ELGeraralyrSGGSVSYLDvllgsesfsdFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAEL 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 568935809 309 SNRNEKLCQELTEIDQLAQRLERHKEQVLETADKELGEAKKEIKR 353
Cdd:COG3883 167 EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
197-395 |
4.51e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 4.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 197 DLLQVADNRIQELQEEVQQLQEKLAQMEKGVLDYSKQIELREREIQRLSLALDggcspdVLSLETRNKTNEKLIAHLNVQ 276
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ------LLPLYQELEALEAELAELPER 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 277 VDFLQQANKELEKHIQELMETKEtvttevvnlsnrneklcqeltEIDQLAQRLERHKEQVLETADKELGEAKKEIKRNLC 356
Cdd:COG4717 148 LEELEERLEELRELEEELEELEA---------------------ELAELQEELEELLEQLSLATEEELQDLAEELEELQQ 206
|
170 180 190
....*....|....*....|....*....|....*....
gi 568935809 357 EMRNLEEKMSKLQWELDLSHKEKERLNSELLLKSDLETV 395
Cdd:COG4717 207 RLAELEEELEEAQEELEELEEELEQLENELEAAALEERL 245
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
195-468 |
6.55e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.77 E-value: 6.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 195 IADLLQVADNRIQELQEEVQQLQEKLAQMEKgvldYSKQIELREREIQRLSLALDggcspdvlSLETRNKTNEKLIAHLN 274
Cdd:TIGR04523 344 ISQLKKELTNSESENSEKQRELEEKQNEIEK----LKKENQSYKQEIKNLESQIN--------DLESKIQNQEKLNQQKD 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 275 VQVDFLQQANKELEKHIQELMETKETVTTEVVNLSNRNEKLCQELTEIDQLAQRLE----------RHKEQVLETADKEL 344
Cdd:TIGR04523 412 EQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLEtqlkvlsrsiNKIKQNLEQKQKEL 491
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 345 GEAKKEIKRNLCEMRNLEEKMSKLQWELDLSHKEKERLNSElllKSDLETVVHQLEQEKQRLSKKLQSFAVTERELTLEV 424
Cdd:TIGR04523 492 KSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESE---KKEKESKISDLEDELNKDDFELKKENLEKEIDEKNK 568
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 568935809 425 ERMRLEHGIKRRDKSPSRLDTFLKGIEEERDYYKKELEKLQHLI 468
Cdd:TIGR04523 569 EIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKI 612
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
197-429 |
7.34e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.44 E-value: 7.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 197 DLLQVADNRIQELQEEVQQLQEKLAQMekgvldySKQIELREREIQRLSLALdggcspdvLSLETRNKTNEKLIAHLNVQ 276
Cdd:TIGR02169 709 QELSDASRKIGEIEKEIEQLEQEEEKL-------KERLEELEEDLSSLEQEI--------ENVKSELKELEARIEELEED 773
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 277 VDFLQQANKELEKHIQElmetketvttevvnlsNRNEKLCQELTEIDQLAQRLE---RHKEQVLETADKELGEAKKEIKR 353
Cdd:TIGR02169 774 LHKLEEALNDLEARLSH----------------SRIPEIQAELSKLEEEVSRIEarlREIEQKLNRLTLEKEYLEKEIQE 837
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 354 NLCEMRNLEEKMSKLQWELDLSHKEKERLNSELLLKS----DLETVVHQLEQEKQRLSKKLQSFAVTERELTLEVERMRL 429
Cdd:TIGR02169 838 LQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEaalrDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRK 917
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
233-470 |
7.82e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 40.31 E-value: 7.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 233 QIELREREIQRLSLALDggcspdvlSLETRNKTNEKLIAHLNVQVDFLQQANKELEKHIQELMETKETVTTEV------- 305
Cdd:COG1196 219 KEELKELEAELLLLKLR--------ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELeeaqaee 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 306 VNLSNRNEKLCQELTEIDQLAQRLERHKEQV---LETADKELGEAKKEIKRNLCEMRNLEEKMSKLQWELDLSHKEKERL 382
Cdd:COG1196 291 YELLAELARLEQDIARLEERRRELEERLEELeeeLAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 383 NSELL--LKSDLETVVHQLEQEKQRLSKKLQSFAVTERELTLEVERMRLEHGIKRRDKSPSRLDTFLKGIEEERDYYKKE 460
Cdd:COG1196 371 EAELAeaEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450
|
250
....*....|
gi 568935809 461 LEKLQHLIQR 470
Cdd:COG1196 451 EAELEEEEEA 460
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
943-1122 |
7.86e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.43 E-value: 7.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 943 ESQISSMAKAMSQLEEELRRHESEKATMLGDVSSLRElcikldsgkdvmtqQLNSKSLELERAVAELENVKSESELLKKQ 1022
Cdd:TIGR02168 224 ELELALLVLRLEELREELEELQEELKEAEEELEELTA--------------ELQELEEKLEELRLEVSELEEEIEELQKE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 1023 LTNERQTIKNLESLLATNRDKEFQSHLTSHEKDTEIQLLKEKLNLSESKLTTQSRETSMLRTKVTQLQTDYDNL--KRQM 1100
Cdd:TIGR02168 290 LYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELeaELEE 369
|
170 180
....*....|....*....|..
gi 568935809 1101 SNEKYERIRKDLIEQAQRTAQM 1122
Cdd:TIGR02168 370 LESRLEELEEQLETLRSKVAQL 391
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
504-719 |
8.53e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 8.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 504 ERDELQRMLERFEKYMEDIQSNVKLLTAERDKLNVLYKEAKEELSTLRKEstnstspnhlVSCVEKEKERALSELRRITA 583
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARR----------IRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 584 EKEALREKLKNIQER---------------------NAVGKSDLEKTIEHLTYINHQLENEKYELQSKMLMMKETVESLE 642
Cdd:COG4942 91 EIAELRAELEAQKEElaellralyrlgrqpplalllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568935809 643 NKSKLQAQKLSHVTGDSSHQKTEMTSLRIVSEQLQRSLDDCQHRLSIKRGELESAQEQIKMLEQKLENLSHRMTVQS 719
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
220-1089 |
8.55e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 40.42 E-value: 8.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 220 LAQMEKGVLDYSKQIELREREIQRLSLALDGGCS--PDVLSLETRNKTNEKLIAHLNVQVDFLQQANKELEKHIQELMET 297
Cdd:TIGR00606 188 LETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEirDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 298 KETVTT---EVVNLSNRNEKLCQ-----------ELTEIDQLAQRLERHKEQVLETADKELGEAKKEIKRNLCEMRNLEE 363
Cdd:TIGR00606 268 DNEIKAlksRKKQMEKDNSELELkmekvfqgtdeQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLV 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 364 KMSKLQWELDLSHKEKERLNSELL---LKSDLETVVHQLEQEKQ----------RLSKKLQSFAVTERELTlEVERMRLE 430
Cdd:TIGR00606 348 EQGRLQLQADRHQEHIRARDSLIQslaTRLELDGFERGPFSERQiknfhtlvieRQEDEAKTAAQLCADLQ-SKERLKQE 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 431 HGIKRRDKSPSRLDTflkgIEEERDYYKKELEKLQHLIQ-------------RRSCAINYSAREKPPVVKCSEKGDCSTD 497
Cdd:TIGR00606 427 QADEIRDEKKGLGRT----IELKKEILEKKQEELKFVIKelqqlegssdrilELDQELRKAERELSKAEKNSLTETLKKE 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 498 VHLITRERDELQRMLERFEKYMEDI----QSNVKLLTAERDKLNVLYK------EAKEELSTLRKESTNSTSPNHLVSCV 567
Cdd:TIGR00606 503 VKSLQNEKADLDRKLRKLDQEMEQLnhhtTTRTQMEMLTKDKMDKDEQirkiksRHSDELTSLLGYFPNKKQLEDWLHSK 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 568 EKEKERALSELRRITAEKEALREKLKNIQERNAVGKSDLEKTIEHLTYI--NHQLENEKYELQSKMLMMKETVESLENKS 645
Cdd:TIGR00606 583 SKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVcgSQDEESDLERLKEEIEKSSKQRAMLAGAT 662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 646 KLQAQKLSHVTGDSSHQKTEMTSLRIVSEQLQRSLDDCQHRLSIKRGELESAQEQIKMLEQKLENLSHRMTVQSEETHAM 725
Cdd:TIGR00606 663 AVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLK 742
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 726 KKTIGV-----------MDKEKDFL--QETVDEKTEKIANLQESLLSKEKVIAQLKVTVAEYETSLNQLQETLTTRD--R 790
Cdd:TIGR00606 743 EKEIPElrnklqkvnrdIQRLKNDIeeQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDldR 822
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 791 EINSLRRQLDASHKELDDVGKSREISFKENRRLQDDLATMARENQEIS---LELEAAVQEKEEMKSRVHKYITEVSrwES 867
Cdd:TIGR00606 823 TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKsekLQIGTNLQRRQQFEEQLVELSTEVQ--SL 900
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 868 LMAAKEKENKDLLDRfQMLHSRAEDWEVKAQQAEGENSSVRLELLSIDTERRHLRERVDLLEKEIQEHINAH-HAYESQI 946
Cdd:TIGR00606 901 IREIKDAKEQDSPLE-TFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYlKQKETEL 979
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 947 SSMAKAMSQLEEELRRHESEKATMLGDVSSLRElcikldsGKDVMTQQLNSKSLELERAVAELENVKSESELLKKQLTNE 1026
Cdd:TIGR00606 980 NTVNAQLEECEKHQEKINEDMRLMRQDIDTQKI-------QERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQM 1052
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568935809 1027 RQTIKNLESLLATNRDKEFQSHLTSHEKDTEIQLLKEKLNLSESKLTTQSRETSMLRTKVTQL 1089
Cdd:TIGR00606 1053 KQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKYREMMIVMRTTEL 1115
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
505-1111 |
9.34e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.10 E-value: 9.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 505 RDELQRMLERFEKYMEDIQSNVKLLTAERDKLNVLYKEAKEELSTLRKEstnstspnhlvscVEKEKERALSELRRITAE 584
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQE-------------MQMERDAMADIRRRESQS 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 585 KEALREKLKNIQERNAVGKSDLEKTIEHltyinhqlENEKYELQSKMLMMKETVESlENKSKLQaqKLSHVTGDSSHQKT 664
Cdd:pfam15921 140 QEDLRNQLQNTVHELEAAKCLKEDMLED--------SNTQIEQLRKMMLSHEGVLQ-EIRSILV--DFEEASGKKIYEHD 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 665 EMTSL--RIVSEQLQRSLDDCQHRLSIKRGELESAQEQIKMLEQKLENlshrmtvqseethamkKTIGVMDKEKDFLQET 742
Cdd:pfam15921 209 SMSTMhfRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQN----------------KIELLLQQHQDRIEQL 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 743 VDEKTEKIANLQESLLSKEkviAQLKVTVAEYETSLNQLQETLTTRDREINSLRRQLDASHKELDDVGKSREISFKEnrr 822
Cdd:pfam15921 273 ISEHEVEITGLTEKASSAR---SQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEE--- 346
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 823 LQDDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENKDLLDRfQMLHSRAEDwevkaqqaeg 902
Cdd:pfam15921 347 LEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDR-DTGNSITID---------- 415
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 903 ensSVRLELLSIDTERRHLRERVDLLEKEIQEHINAHHAYESQISSMAKAMSQLEEELrrhESEKATMLGDVSSLRELCI 982
Cdd:pfam15921 416 ---HLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQL---ESTKEMLRKVVEELTAKKM 489
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935809 983 KLDSGKDV---MTQQLNSKSLELERAVAELENVKSESELLKKQLtnerQTIKNLESLLATNRDKEFQSHLTSHEKDTEIQ 1059
Cdd:pfam15921 490 TLESSERTvsdLTASLQEKERAIEATNAEITKLRSRVDLKLQEL----QHLKNEGDHLRNVQTECEALKLQMAEKDKVIE 565
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 568935809 1060 LLKEKLNLSESKLTTQSRETSMLRTKVTQLQTDYDNLKRQMSNEKYERIRKD 1111
Cdd:pfam15921 566 ILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKD 617
|
|
| |
