NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|578809937|ref|XP_006714543|]
View 

UPF0489 protein C5orf22 isoform X6 [Homo sapiens]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
COG5330 super family cl44214
Uncharacterized conserved protein, DUF2336 family [Function unknown];
23-71 6.65e-03

Uncharacterized conserved protein, DUF2336 family [Function unknown];


The actual alignment was detected with superfamily member COG5330:

Pssm-ID: 444118 [Multi-domain]  Cd Length: 351  Bit Score: 36.05  E-value: 6.65e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 578809937  23 LTEEDLVDIVDTR--IHQL-----EDLEATFAD-LCDGDDEETVQRWASNPG-------MESLV 71
Cdd:COG5330  103 LTDEDLVEIARSGsqEHLLaiarrPDLSEAVTDaLVERGDEEVVRALLANPGarlseasLERLV 166
 
Name Accession Description Interval E-value
COG5330 COG5330
Uncharacterized conserved protein, DUF2336 family [Function unknown];
23-71 6.65e-03

Uncharacterized conserved protein, DUF2336 family [Function unknown];


Pssm-ID: 444118 [Multi-domain]  Cd Length: 351  Bit Score: 36.05  E-value: 6.65e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 578809937  23 LTEEDLVDIVDTR--IHQL-----EDLEATFAD-LCDGDDEETVQRWASNPG-------MESLV 71
Cdd:COG5330  103 LTDEDLVEIARSGsqEHLLaiarrPDLSEAVTDaLVERGDEEVVRALLANPGarlseasLERLV 166
 
Name Accession Description Interval E-value
COG5330 COG5330
Uncharacterized conserved protein, DUF2336 family [Function unknown];
23-71 6.65e-03

Uncharacterized conserved protein, DUF2336 family [Function unknown];


Pssm-ID: 444118 [Multi-domain]  Cd Length: 351  Bit Score: 36.05  E-value: 6.65e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 578809937  23 LTEEDLVDIVDTR--IHQL-----EDLEATFAD-LCDGDDEETVQRWASNPG-------MESLV 71
Cdd:COG5330  103 LTDEDLVEIARSGsqEHLLaiarrPDLSEAVTDaLVERGDEEVVRALLANPGarlseasLERLV 166
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH