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Conserved domains on  [gi|755498584|ref|XP_011237568|]
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filensin isoform X3 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG4913 super family cl25907
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
7-105 2.98e-07

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


The actual alignment was detected with superfamily member COG4913:

Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 53.00  E-value: 2.98e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584    7 FTEREVAALQNQLEEGREAVTHLQAQKAELQAQTTALEQAIKHAHECYDE----ELQLYNEQIENLRKEIEEAERSLERS 82
Cdd:COG4913   285 FAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGnggdRLEQLEREIERLERELEERERRRARL 364

                          90       100
                  ....*....|....*....|...
gi 755498584   83 SYDCRQLAVAQQTLRNELDRYHR 105
Cdd:COG4913   365 EALLAALGLPLPASAEEFAALRA 387
 
Name Accession Description Interval E-value
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
7-105 2.98e-07

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 53.00  E-value: 2.98e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584    7 FTEREVAALQNQLEEGREAVTHLQAQKAELQAQTTALEQAIKHAHECYDE----ELQLYNEQIENLRKEIEEAERSLERS 82
Cdd:COG4913   285 FAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGnggdRLEQLEREIERLERELEERERRRARL 364

                          90       100
                  ....*....|....*....|...
gi 755498584   83 SYDCRQLAVAQQTLRNELDRYHR 105
Cdd:COG4913   365 EALLAALGLPLPASAEEFAALRA 387
PRK09039 PRK09039
peptidoglycan -binding protein;
8-155 9.36e-06

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 47.65  E-value: 9.36e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584   8 TEREVAALQNQLEEGREAVTHLQAQKAELQAQTTALEQAIKHAhecyDEELQLYNEQIENLRKEIEEAERSLERSSYDCR 87
Cdd:PRK09039  93 AEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARA----LAQVELLNQQIAALRRQLAALEAALDASEKRDR 168

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584  88 Q-------------LAVAQQTlrNELDRYH-----RI---------IEIEGSRL---SSVFIETPISLITPSHGAplslg 137
Cdd:PRK09039 169 EsqakiadlgrrlnVALAQRV--QELNRYRseffgRLreilgdregIRIVGDRFvfqSEVLFPTGSAELNPEGQA----- 241

                        170
                 ....*....|....*...
gi 755498584 138 sSVKDLARAVQDITAAKP 155
Cdd:PRK09039 242 -EIAKLAAALIELAKEIP 258
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 1-102 9.72e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 41.97  E-value: 9.72e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584     1 MREEKLFTEREVAALQNQLEEGREAVTHLQAQKAELQAQTTALEQAIKHAHECYD---EELQLYNEQIENLRKEIEEAER 77
Cdd:TIGR02168  829 LERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAsleEALALLRSELEELSEELRELES 908

                           90       100
                   ....*....|....*....|....*
gi 755498584    78 SLERSSYDCRQLAVAQQTLRNELDR 102
Cdd:TIGR02168  909 KRSELRRELEELREKLAQLELRLEG 933
TPR_MLP1_2 pfam07926
TPR/MLP1/MLP2-like protein; The sequences featured in this family are similar to a region of ...
 10-101 5.45e-03

TPR/MLP1/MLP2-like protein; The sequences featured in this family are similar to a region of human TPR protein and to yeast myosin-like proteins 1 (MLP1) and 2 (MLP2). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores. TPR is thought to be a component of nuclear pore complex- attached intra-nuclear filaments, and is implicated in nuclear protein import. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerization of kinase domains or by targeting these kinases to the nuclear pore complex. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity.


Pssm-ID: 462316 [Multi-domain]  Cd Length: 129  Bit Score: 36.85  E-value: 5.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584   10 REVAALQNQLEEGREAVTHLQAQKAELQAQTTALEQAIKHAHECYDEELQL----------YNEQIENLRKEIEEAERSL 79
Cdd:pfam07926   1 AELSSLQSEIKRLKEEAADAEAQLQKLQEDLEKQAEIAREAQQNYERELVLhaedikalqaLREELNELKAEIAELKAEA 80

                          90       100
                  ....*....|....*....|....*.
gi 755498584   80 ERSSYDCRQ----LAVAQQTLRNELD 101
Cdd:pfam07926  81 ESAKAELEEseesWEEQKKELEKELS 106
ClyA_Cry6Aa-like cd22656
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes ...
 3-81 7.39e-03

Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes pesticidal Cry6Aa toxin from Bacillus thuringiensis, one of the many parasporal crystal (Cry) toxins produced during the sporulation phase of growth. Many of these proteins are toxic to numerous insect species and have been effectively used as proteinaceous insecticides to directly kill insect pests; some have been used to control insect growth on transgenic agricultural plants. Cry6Aa exists as a protoxin, which is activated by cleavage using trypsin. Structure studies for Cry6Aa support a mechanism of action by pore formation, similar to cytolysin A (ClyA)-type alpha pore-forming toxins (alpha-PFTs) such as HblB, and bioassay and mutation studies show that Cry6Aa is an active pore-forming toxin. Cry6Aa shows atypical features compared to other members of alpha-PFTs, including internal repeat sequences and small loop regions within major alpha helices.


Pssm-ID: 439154 [Multi-domain]  Cd Length: 309  Bit Score: 38.50  E-value: 7.39e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584   3 EEKLFTEREVAALQNQLEEGR-EAVTHLQAQKAELQAQTTALEQAIKHAHECYDEeLQLYNEQIENLRKEIEEAERSLER 81
Cdd:cd22656  172 EGGAIARKEIKDLQKELEKLNeEYAAKLKAKIDELKALIADDEAKLAAALRLIAD-LTAADTDLDNLLALIGPAIPALEK 250
 
Name Accession Description Interval E-value
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
7-105 2.98e-07

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 53.00  E-value: 2.98e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584    7 FTEREVAALQNQLEEGREAVTHLQAQKAELQAQTTALEQAIKHAHECYDE----ELQLYNEQIENLRKEIEEAERSLERS 82
Cdd:COG4913   285 FAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGnggdRLEQLEREIERLERELEERERRRARL 364

                          90       100
                  ....*....|....*....|...
gi 755498584   83 SYDCRQLAVAQQTLRNELDRYHR 105
Cdd:COG4913   365 EALLAALGLPLPASAEEFAALRA 387
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 8-201 1.07e-06

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 50.53  E-value: 1.07e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584   8 TEREVAALQNQLEEGREAVTHLQAQKAELQAQTTALEQAIKHAHecydEELQLYNEQIENLRKEIEEAERSLERSSydcR 87
Cdd:COG4942   25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA----RRIRALEQELAALEAELAELEKEIAELR---A 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584  88 QLAVAQQTLRNELDRYHRIIEIEGSRL---SSVFIETPISLITPSHGAP------LSLGSSVKDLARAVQDITAAKPRQK 158
Cdd:COG4942   98 ELEAQKEELAELLRALYRLGRQPPLALllsPEDFLDAVRRLQYLKYLAParreqaEELRADLAELAALRAELEAERAELE 177

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 755498584 159 ALPKSLPKRKEIIAQDKVE--ETLEDAPLKPPQEPKALQVERKAE 201
Cdd:COG4942  178 ALLAELEEERAALEALKAErqKLLARLEKELAELAAELAELQQEA 222
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
9-194 9.32e-06

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 48.23  E-value: 9.32e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584   9 EREVAALQNQLEEGREAVTHLQAQKAELQAQTTALEQAIKHAHECYDEELQLYNEQIENLRKEIEEAERSLERSSYDCRQ 88
Cdd:COG4717  145 PERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEE 224

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584  89 LAVAQQTLRNELDRYHRIIEIEgSRLSSVFIETPISLITPSHGAPLSLGSSVKDLARAVQDITA----------AKPRQK 158
Cdd:COG4717  225 LEEELEQLENELEAAALEERLK-EARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLAllflllarekASLGKE 303

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 755498584 159 ALPKSLPKRKEIIAQDKVEETLEDAPLKPPQEPKAL 194
Cdd:COG4717  304 AEELQALPALEELEEEELEELLAALGLPPDLSPEEL 339
PRK09039 PRK09039
peptidoglycan -binding protein;
8-155 9.36e-06

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 47.65  E-value: 9.36e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584   8 TEREVAALQNQLEEGREAVTHLQAQKAELQAQTTALEQAIKHAhecyDEELQLYNEQIENLRKEIEEAERSLERSSYDCR 87
Cdd:PRK09039  93 AEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARA----LAQVELLNQQIAALRRQLAALEAALDASEKRDR 168

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584  88 Q-------------LAVAQQTlrNELDRYH-----RI---------IEIEGSRL---SSVFIETPISLITPSHGAplslg 137
Cdd:PRK09039 169 EsqakiadlgrrlnVALAQRV--QELNRYRseffgRLreilgdregIRIVGDRFvfqSEVLFPTGSAELNPEGQA----- 241

                        170
                 ....*....|....*...
gi 755498584 138 sSVKDLARAVQDITAAKP 155
Cdd:PRK09039 242 -EIAKLAAALIELAKEIP 258
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
8-115 2.11e-05

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 47.07  E-value: 2.11e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584   8 TEREVAALQNQLEEGREAVTHLQAQKAELQAQTTALEQAIKhAHECYDEELQLyNEQIENLRKEIEEAERSLERSsydcR 87
Cdd:COG4717   86 KEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ-LLPLYQELEAL-EAELAELPERLEELEERLEEL----R 159

                         90       100
                 ....*....|....*....|....*...
gi 755498584  88 QLAVAQQTLRNELDRYHRIIEIEGSRLS 115
Cdd:COG4717  160 ELEEELEELEAELAELQEELEELLEQLS 187
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 9-102 2.51e-05

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 46.85  E-value: 2.51e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584   9 EREVAALQNQLEEGREAVTHLQAQKAELQAQTTALEQAIKHAhecyDEELQLYNEQIENLRKEIEEAERSLERSSYDCRQ 88
Cdd:COG1196  238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEEL----ELELEEAQAEEYELLAELARLEQDIARLEERRRE 313

                         90
                 ....*....|....
gi 755498584  89 LAVAQQTLRNELDR 102
Cdd:COG1196  314 LEERLEELEEELAE 327
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
9-108 6.14e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 45.68  E-value: 6.14e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584    9 EREVAALQNQLEEGREAVTHLQAQKAELQAQTTALEQAIKHAHECYD-EELQlynEQIENLRKEIEEaersLERSSYDCR 87
Cdd:COG4913   616 EAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDvASAE---REIAELEAELER----LDASSDDLA 688

                          90       100
                  ....*....|....*....|.
gi 755498584   88 QLAVAQQTLRNELDRYHRIIE 108
Cdd:COG4913   689 ALEEQLEELEAELEELEEELD 709
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
8-93 6.25e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 45.68  E-value: 6.25e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584    8 TEREVAALQNQLEEGREA---VTHLQAQKAELQAQTTALEQAIKhahECYDEELQLyNEQIENLRKEIEEAERSLERSSY 84
Cdd:COG4913   666 AEREIAELEAELERLDASsddLAALEEQLEELEAELEELEEELD---ELKGEIGRL-EKELEQAEEELDELQDRLEAAED 741


                  ....*....
gi 755498584   85 DCRQLAVAQ 93
Cdd:COG4913   742 LARLELRAL 750
COG2433 COG2433
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
8-113 7.07e-05

Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];


Pssm-ID: 441980 [Multi-domain]  Cd Length: 644  Bit Score: 45.23  E-value: 7.07e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584   8 TEREVAALQNQLEEGREAVTHLQAQKAELQAQTTALEQAIKHAHECY------DEELQLYNEQIENLRKEIEEAERSLER 81
Cdd:COG2433  411 EEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARSEErreirkDREISRLDREIERLERELEEERERIEE 490

                         90       100       110
                 ....*....|....*....|....*....|..
gi 755498584  82 ssydcrqlavaqqtLRNELDRYHRIIEIEGSR 113
Cdd:COG2433  491 --------------LKRKLERLKELWKLEHSG 508
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
9-105 9.25e-04

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 41.68  E-value: 9.25e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584   9 EREVAALQNQLEEGREAVTHLQAQKAELQAQTTALEQaikhahecyDEELQLYNEQIENLRKEIEEAERSLERssydcrq 88
Cdd:COG4717  431 EEELEELEEELEELEEELEELREELAELEAELEQLEE---------DGELAELLQELEELKAELRELAEEWAA------- 494

                         90
                 ....*....|....*..
gi 755498584  89 LAVAQQTLRNELDRYHR 105
Cdd:COG4717  495 LKLALELLEEAREEYRE 511
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 9-108 9.66e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 41.85  E-value: 9.66e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584   9 EREVAALQNQLEEGREAVTHLQAQKAELQAQTTALEQAIKHAhecyDEELQLYNEQIENLRKEIEEAERSLERSSYDCRQ 88
Cdd:COG1196  280 ELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEEL----EEELAELEEELEELEEELEELEEELEEAEEELEE 355

                         90       100
                 ....*....|....*....|
gi 755498584  89 LAVAQQTLRNELDRYHRIIE 108
Cdd:COG1196  356 AEAELAEAEEALLEAEAELA 375
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 1-102 9.72e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 41.97  E-value: 9.72e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584     1 MREEKLFTEREVAALQNQLEEGREAVTHLQAQKAELQAQTTALEQAIKHAHECYD---EELQLYNEQIENLRKEIEEAER 77
Cdd:TIGR02168  829 LERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAsleEALALLRSELEELSEELRELES 908

                           90       100
                   ....*....|....*....|....*
gi 755498584    78 SLERSSYDCRQLAVAQQTLRNELDR 102
Cdd:TIGR02168  909 KRSELRRELEELREKLAQLELRLEG 933
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 1-102 1.12e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 41.46  E-value: 1.12e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584   1 MREEKLFTEREVAALQNQLEEGREAVTHLQAQKAELQAQTTALEQAIKHAhecyDEELQLYNEQIENLRKEIEEAERSLE 80
Cdd:COG1196  286 AQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEEL----EEELEELEEELEEAEEELEEAEAELA 361

                         90       100
                 ....*....|....*....|..
gi 755498584  81 RSSydcRQLAVAQQTLRNELDR 102
Cdd:COG1196  362 EAE---EALLEAEAELAEAEEE 380
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
8-167 1.21e-03

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 41.54  E-value: 1.21e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584   8 TEREVAALQNQLEEGREAVTHLQAQKAELQAQTTALEQAIKHAHECYDEELQlyNEQIENLRKEIEEAERSL--ERSSYD 85
Cdd:COG3206  210 LSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQ--SPVIQQLRAQLAELEAELaeLSARYT 287

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584  86 CRQLAVaqQTLRNELDRYHRIIEIEGSRLSSvfietpislitpshgaplSLGSSVKDLARAVQDITAAKPRQKALPKSLP 165
Cdd:COG3206  288 PNHPDV--IALRAQIAALRAQLQQEAQRILA------------------SLEAELEALQAREASLQAQLAQLEARLAELP 347


                 ..
gi 755498584 166 KR 167
Cdd:COG3206  348 EL 349
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
2-94 1.46e-03

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 40.66  E-value: 1.46e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584   2 REEKLFTEREVAALQNQLEEGREAVTHLQAQKAELQAQTTALEQAIKHAHECY---DEELQLYNEQIENLRKEIEEAERS 78
Cdd:COG4372   93 QAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIaerEEELKELEEQLESLQEELAALEQE 172

                         90
                 ....*....|....*.
gi 755498584  79 LERSSYDCRQLAVAQQ 94
Cdd:COG4372  173 LQALSEAEAEQALDEL 188
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
1-128 2.05e-03

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 40.77  E-value: 2.05e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584   1 MREEKLFTEREVAALQNQLEEGREAVTHLQAQKAELQAQttaLEQAIKHAHECYDEELQLYNEQIENLRKEIEEAERSLE 80
Cdd:COG3206  268 LRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQ---LQQEAQRILASLEAELEALQAREASLQAQLAQLEARLA 344

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 755498584  81 RSSydcrQLAVAQQTLRNELDRYHRIIE-----IEGSRLSSVFIETPISLITP 128
Cdd:COG3206  345 ELP----ELEAELRRLEREVEVARELYEsllqrLEEARLAEALTVGNVRVIDP 393
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 9-95 2.14e-03

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 40.20  E-value: 2.14e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584   9 EREVAALQNQLEEGREAVTHLQAQKAELQAQTTALEQAIKHAhecyDEELQLYNEQIENLRKEIEEAERSLERSSYDCRQ 88
Cdd:COG3883   15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNEL----QAELEALQAEIDKLQAEIAEAEAEIEERREELGE 90


                 ....*..
gi 755498584  89 LAVAQQT 95
Cdd:COG3883   91 RARALYR 97
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 6-114 2.26e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 40.81  E-value: 2.26e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584     6 LFTEREVAALQNQLEEGREAVTHLQAQKAELQAQTTALEQAIKHAhecyDEELQLYNEQIENLRKEIEEAERSLERSSYD 85
Cdd:TIGR02168  673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQL----RKELEELSRQISALRKDLARLEAEVEQLEER 748

                           90       100
                   ....*....|....*....|....*....
gi 755498584    86 CRQLAVAQQTLRNELDRYHRIIEIEGSRL 114
Cdd:TIGR02168  749 IAQLSKELTELEAEIEELEERLEEAEEEL 777
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 10-98 2.49e-03

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 40.71  E-value: 2.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584   10 REVAALQNQLEEGREAVTHLQAQKAELQAQTTALEQAIKHAHECYDEELQlynEQIENLRKEIE---EAERSLERSSYDC 86
Cdd:COG3096   843 QRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNKLLPQANLLADETLA---DRLEELREELDaaqEAQAFIQQHGKAL 919

                          90
                  ....*....|..
gi 755498584   87 RQLAVAQQTLRN 98
Cdd:COG3096   920 AQLEPLVAVLQS 931
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 1-108 2.80e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 40.43  E-value: 2.80e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584     1 MREEKLFTEREVAALQNQLEEGREAVTHLQAQKAELQ-------AQTTALEQAIKHAHE---CYDEELQLYNEQIENLRK 70
Cdd:TIGR02168  251 AEEELEELTAELQELEEKLEELRLEVSELEEEIEELQkelyalaNEISRLEQQKQILRErlaNLERQLEELEAQLEELES 330

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 755498584    71 EIEEAERSLERSSYDCRQLAVAQQTLRNELDRYHRIIE 108
Cdd:TIGR02168  331 KLDELAEELAELEEKLEELKEELESLEAELEELEAELE 368
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
10-105 3.29e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 39.75  E-value: 3.29e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584  10 REVAALQNQLEEGREAVTHLQAQ-----KAELQAQTTALEQAIKHAHECYDEELQLYNEQIENLRKEIEEAERSLER--S 82
Cdd:COG4717  388 RAALEQAEEYQELKEELEELEEQleellGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQleE 467

                         90       100
                 ....*....|....*....|...
gi 755498584  83 SYDCRQLAVAQQTLRNELDRYHR 105
Cdd:COG4717  468 DGELAELLQELEELKAELRELAE 490
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 8-199 3.52e-03

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 40.05  E-value: 3.52e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584     8 TEREVAALQNQLEEGREAVTHLQAQKAELQAQTTALEQAIKHAH-ECYDEELQLYNEQIENLRKEIEEAERSLERSSYDC 86
Cdd:TIGR02169  749 LEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRiPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEK 828

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584    87 RQLAVAQQTLRNELDRYHRIIEIEGSRLSSV--FIETPISLITPSHGAPLSLGSSVKDLARAVQD----ITAAKPRQKAL 160
Cdd:TIGR02169  829 EYLEKEIQELQEQRIDLKEQIKSIEKEIENLngKKEELEEELEELEAALRDLESRLGDLKKERDEleaqLRELERKIEEL 908

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*..
gi 755498584   161 PKSLPKRKEIIAQDKV--------EETLEDAPLKPPQEPKALQVERK 199
Cdd:TIGR02169  909 EAQIEKKRKRLSELKAklealeeeLSEIEDPKGEDEEIPEEELSLED 955
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
9-105 3.81e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 39.90  E-value: 3.81e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584    9 EREVAALQNQLEEGREAVTHLQAQKAELQAQTTALEQAIKHAHECYDE-------------ELQLYNEQIENLRKEIEEA 75
Cdd:COG4913   691 EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAaedlarlelrallEERFAAALGDAVERELREN 770

                          90       100       110
                  ....*....|....*....|....*....|.
gi 755498584   76 -ERSLERSSydcRQLAVAQQTLRNELDRYHR 105
Cdd:COG4913   771 lEERIDALR---ARLNRAEEELERAMRAFNR 798
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
2-105 3.94e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 39.90  E-value: 3.94e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584    2 REEKLftEREVAALQNQLEEGREAVTHLQAQKAELQAQTTALEQAIKHAHECYDEELQLYNEQIENLRKEIEEAERSLer 81
Cdd:COG4913   339 RLEQL--EREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAAL-- 414

                          90       100
                  ....*....|....*....|....
gi 755498584   82 ssydcRQLAVAQQTLRNELDRYHR 105
Cdd:COG4913   415 -----RDLRRELRELEAEIASLER 433
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 8-80 4.46e-03

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 38.75  E-value: 4.46e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584   8 TEREVAALQNQLE--------------EGREAVTHLQAQKAELQAQTTALEQAIKHAHECYDEELQLYNEQIENLRKEIE 73
Cdd:COG1579   87 NNKEYEALQKEIEslkrrisdledeilELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAERE 166


                 ....*..
gi 755498584  74 EAERSLE 80
Cdd:COG1579  167 ELAAKIP 173
TPR_MLP1_2 pfam07926
TPR/MLP1/MLP2-like protein; The sequences featured in this family are similar to a region of ...
 10-101 5.45e-03

TPR/MLP1/MLP2-like protein; The sequences featured in this family are similar to a region of human TPR protein and to yeast myosin-like proteins 1 (MLP1) and 2 (MLP2). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores. TPR is thought to be a component of nuclear pore complex- attached intra-nuclear filaments, and is implicated in nuclear protein import. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerization of kinase domains or by targeting these kinases to the nuclear pore complex. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity.


Pssm-ID: 462316 [Multi-domain]  Cd Length: 129  Bit Score: 36.85  E-value: 5.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584   10 REVAALQNQLEEGREAVTHLQAQKAELQAQTTALEQAIKHAHECYDEELQL----------YNEQIENLRKEIEEAERSL 79
Cdd:pfam07926   1 AELSSLQSEIKRLKEEAADAEAQLQKLQEDLEKQAEIAREAQQNYERELVLhaedikalqaLREELNELKAEIAELKAEA 80

                          90       100
                  ....*....|....*....|....*.
gi 755498584   80 ERSSYDCRQ----LAVAQQTLRNELD 101
Cdd:pfam07926  81 ESAKAELEEseesWEEQKKELEKELS 106
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 4-108 6.53e-03

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 39.28  E-value: 6.53e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584     4 EKLFTEREVAALQNQLEEGREAVTHLQAQKAELQAQTTALEQAIKHAHE----CYDEELQLYNEQIENLRKEIEEAERSL 79
Cdd:TIGR02169  231 EKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKkikdLGEEEQLRVKEKIGELEAEIASLERSI 310

                           90       100
                   ....*....|....*....|....*....
gi 755498584    80 ERSSYDCRQLAVAQQTLRNELDRYHRIIE 108
Cdd:TIGR02169  311 AEKERELEDAEERLAKLEAEIDKLLAEIE 339
ClyA_Cry6Aa-like cd22656
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes ...
 3-81 7.39e-03

Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes pesticidal Cry6Aa toxin from Bacillus thuringiensis, one of the many parasporal crystal (Cry) toxins produced during the sporulation phase of growth. Many of these proteins are toxic to numerous insect species and have been effectively used as proteinaceous insecticides to directly kill insect pests; some have been used to control insect growth on transgenic agricultural plants. Cry6Aa exists as a protoxin, which is activated by cleavage using trypsin. Structure studies for Cry6Aa support a mechanism of action by pore formation, similar to cytolysin A (ClyA)-type alpha pore-forming toxins (alpha-PFTs) such as HblB, and bioassay and mutation studies show that Cry6Aa is an active pore-forming toxin. Cry6Aa shows atypical features compared to other members of alpha-PFTs, including internal repeat sequences and small loop regions within major alpha helices.


Pssm-ID: 439154 [Multi-domain]  Cd Length: 309  Bit Score: 38.50  E-value: 7.39e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584   3 EEKLFTEREVAALQNQLEEGR-EAVTHLQAQKAELQAQTTALEQAIKHAHECYDEeLQLYNEQIENLRKEIEEAERSLER 81
Cdd:cd22656  172 EGGAIARKEIKDLQKELEKLNeEYAAKLKAKIDELKALIADDEAKLAAALRLIAD-LTAADTDLDNLLALIGPAIPALEK 250
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 2-102 7.41e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 38.76  E-value: 7.41e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584   2 REEKLFTEREVAALQNQLEEGREAVTHLQAQKAELQAQTTAL---EQAIKHAHECYDEELQLYNEQIENLRKEIEEAERS 78
Cdd:COG1196  245 EAELEELEAELEELEAELAELEAELEELRLELEELELELEEAqaeEYELLAELARLEQDIARLEERRRELEERLEELEEE 324

                         90       100
                 ....*....|....*....|....
gi 755498584  79 LERSSYDCRQLAVAQQTLRNELDR 102
Cdd:COG1196  325 LAELEEELEELEEELEELEEELEE 348
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
 24-102 8.15e-03

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 38.67  E-value: 8.15e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 755498584    24 EAVTHLQAQKAELQAQTTALeQAIKHAHECYDEELQLYNEQIENLRKEIEEAERSLERSSYDCRQLAVAQQTLRNELDR 102
Cdd:pfam12128  594 EWAASEEELRERLDKAEEAL-QSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNK 671
EmrA COG1566
Multidrug resistance efflux pump EmrA [Defense mechanisms];
2-82 9.68e-03

Multidrug resistance efflux pump EmrA [Defense mechanisms];


Pssm-ID: 441174 [Multi-domain]  Cd Length: 331  Bit Score: 38.11  E-value: 9.68e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584   2 REEKLFTEREVAalQNQLEEGREAVTHLQAQKAELQAQTTALEQAIKhahecYDEELQLYNEQIENLRKEIEEAERSLER 81
Cdd:COG1566  135 RYQALYKKGAVS--QQELDEARAALDAAQAQLEAAQAQLAQAQAGLR-----EEEELAAAQAQVAQAEAALAQAELNLAR 207


                 .
gi 755498584  82 S 82
Cdd:COG1566  208 T 208
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 8-108 9.76e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 38.38  E-value: 9.76e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755498584   8 TEREVAALQNQLEEGREAVTHLQAQKAELQAQTTALEQAIKHAhecyDEELQLYNEQIENLRKEIEEAERSLERSSydcR 87
Cdd:COG1196  300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEEL----EEELEEAEEELEEAEAELAEAEEALLEAE---A 372

                         90       100
                 ....*....|....*....|.
gi 755498584  88 QLAVAQQTLRNELDRYHRIIE 108
Cdd:COG1196  373 ELAEAEEELEELAEELLEALR 393
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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