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Conserved domains on  [gi|755542996|ref|XP_011242463|]
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trans-L-3-hydroxyproline dehydratase isoform X1 [Mus musculus]

Protein Classification

4-hydroxyproline epimerase; proline racemase family protein( domain architecture ID 1905033)

4-hydroxyproline epimerase catalyzes the epimerization of trans-4-hydroxy-L-proline (t4LHyp) to cis-4-hydroxy-D-proline (c4DHyp)| proline racemase family protein similar to trans-3-hydroxy-L-proline (t3LHyp) dehydratase (aka 4-hydroxyproline 2-epimerase) that catalyzes the dehydration of t3LHyp to delta(1)-pyrroline-2-carboxylate (Pyr2C), and the epimerization of trans-4-hydroxy-L-proline (t4LHyp) to cis-4-hydroxy-D-proline (c4DHyp)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Pro_racemase super family cl42407
Proline racemase; This family consists of proline racemase (EC 5.1.1.4) proteins which ...
 22-314 4.18e-133

Proline racemase; This family consists of proline racemase (EC 5.1.1.4) proteins which catalyze the interconversion of L- and D-proline in bacteria. This family also contains several similar eukaryotic proteins including Swiss:Q9NCP4 a sequence with B-cell mitogenic properties which has been characterized as a co-factor-independent proline racemase.


The actual alignment was detected with superfamily member pfam05544:

Pssm-ID: 478179  Cd Length: 325  Bit Score: 382.03  E-value: 4.18e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542996   22 VVDMHTGGEPLRIVHAGCPEVAGPTLLAKRRYMRQHLDYIRRRLVFEPRGHRDMYGAILVPSELPDAHLGVLFLHNEGYS 101
Cdd:pfam05544   1 VVDSHTEGEPGRVVVGGVPPLPGATMAEKRRYFARDHDHLRRFLMFEPRGHDMMSGALLVPPKRPDADAGVIFMEPSGYL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542996  102 SMCGHAVLALGRFALDFGLVPAPpkgAREAQVNIHCPCGLVTAFVECEGGRsCGPVRFHSVPAFVLASDLTVDVPGHGKV 181
Cdd:pfam05544  81 PMCGHNTIGVVTVLLETGIVPPQ---EPETRLNLETPAGLVEARAECRDGK-VERVSLRNVPSFVYALDVEVEVPGLGRV 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542996  182 LVDIAYGGAFYAFVSAEKLGLDVCSAKTRDLVDAASALTGAVKAQFKINHPESEDLGFLYGSILTDGKDAYsEEATTNIC 261
Cdd:pfam05544 157 RVDIAYGGNFYAIVDAEQLGFDIEPAEARELVAAGEKIRDALNEQLKVVHPENPDIRGVSHVQLTGPPTRA-EAHARNAV 235

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 755542996  262 VFADEQVDRSPTGSGVTARIALQYHKGLLQLNQTRAFKsSATGSVFTGCAVRL 314
Cdd:pfam05544 236 IIGPGAIDRSPCGTGTSARMAQLHAKGKLKVGETFVHE-SIIGSEFEGRVEGE 287
 
Name Accession Description Interval E-value
Pro_racemase pfam05544
Proline racemase; This family consists of proline racemase (EC 5.1.1.4) proteins which ...
 22-314 4.18e-133

Proline racemase; This family consists of proline racemase (EC 5.1.1.4) proteins which catalyze the interconversion of L- and D-proline in bacteria. This family also contains several similar eukaryotic proteins including Swiss:Q9NCP4 a sequence with B-cell mitogenic properties which has been characterized as a co-factor-independent proline racemase.


Pssm-ID: 398923  Cd Length: 325  Bit Score: 382.03  E-value: 4.18e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542996   22 VVDMHTGGEPLRIVHAGCPEVAGPTLLAKRRYMRQHLDYIRRRLVFEPRGHRDMYGAILVPSELPDAHLGVLFLHNEGYS 101
Cdd:pfam05544   1 VVDSHTEGEPGRVVVGGVPPLPGATMAEKRRYFARDHDHLRRFLMFEPRGHDMMSGALLVPPKRPDADAGVIFMEPSGYL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542996  102 SMCGHAVLALGRFALDFGLVPAPpkgAREAQVNIHCPCGLVTAFVECEGGRsCGPVRFHSVPAFVLASDLTVDVPGHGKV 181
Cdd:pfam05544  81 PMCGHNTIGVVTVLLETGIVPPQ---EPETRLNLETPAGLVEARAECRDGK-VERVSLRNVPSFVYALDVEVEVPGLGRV 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542996  182 LVDIAYGGAFYAFVSAEKLGLDVCSAKTRDLVDAASALTGAVKAQFKINHPESEDLGFLYGSILTDGKDAYsEEATTNIC 261
Cdd:pfam05544 157 RVDIAYGGNFYAIVDAEQLGFDIEPAEARELVAAGEKIRDALNEQLKVVHPENPDIRGVSHVQLTGPPTRA-EAHARNAV 235

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 755542996  262 VFADEQVDRSPTGSGVTARIALQYHKGLLQLNQTRAFKsSATGSVFTGCAVRL 314
Cdd:pfam05544 236 IIGPGAIDRSPCGTGTSARMAQLHAKGKLKVGETFVHE-SIIGSEFEGRVEGE 287
PrdF COG3938
Proline racemase/hydroxyproline epimerase [Amino acid transport and metabolism];
19-313 1.90e-119

Proline racemase/hydroxyproline epimerase [Amino acid transport and metabolism];


Pssm-ID: 443139  Cd Length: 335  Bit Score: 347.86  E-value: 1.90e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542996  19 ALSVVDMHTGGEPLRIVHAGCPEVAGPTLLAKRRYMRQHLDYIRRRLVFEPRGHRDMYGAILVPSELPDAHLGVLFLHNE 98
Cdd:COG3938    6 TITTIDAHTEGEPTRVVTGGVPPLPGNTMLEKRRYFAENYDWLRRLLMFEPRGHADMSGALLVPPTRPDADFGVIFMETS 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542996  99 GYSSMCGHAVLALGRFALDFGLVPAPPKgarEAQVNIHCPCGLVTAFVECEGGRsCGPVRFHSVPAFVLASDLTVDVPGH 178
Cdd:COG3938   86 GYLPMCGHGTIGVATVLLETGLVPMTEP---VTEVVLDTPAGLVRARAEVEDGK-VESVTFENVPSFVYALDVEVEVPGL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542996 179 GKVLVDIAYGGAFYAFVSAEKLGLDVCSAKTRDLVDAASALTGAVKAQFKINHPESEDLGFLYGSILTDgkDAYSEEATT 258
Cdd:COG3938  162 GTVTVDIAYGGNFYAIVDAQQLGLDLEPENARELIRLGLEIRDAANEQLEVVHPENPDINGVSHVEFTG--PPTDPDADA 239

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 755542996 259 -NICVFADEQVDRSPTGSGVTARIALQYHKGLLQLNQTRAFkSSATGSVFTGCAVR 313
Cdd:COG3938  240 rNAVVFGPGAIDRSPCGTGTSARMALLHARGELKVGETFVH-ESIIGSRFTGRILE 294
PRK13969 PRK13969
proline racemase; Provisional
 23-309 2.62e-73

proline racemase; Provisional


Pssm-ID: 184427 [Multi-domain]  Cd Length: 334  Bit Score: 230.13  E-value: 2.62e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542996  23 VDMHTGGEPLRIVHAGCPEVAGPTLLAKRRYMRQHLDYIRRRLVFEPRGHRDMYGAILVPSELPDAHLGVLFLHNEGYSS 102
Cdd:PRK13969  10 IDSHTMGEPTRIVVGGLPKIPGKTMAEKKEYLEENNDSLRTALMSEPRGHNDMFGSIYTEPADETADFGIIFMDGGGYLN 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542996 103 MCGHAVLALGRFALDFGLVPAPPKgarEAQVNIHCPCGLVTAFVECEGGRScGPVRFHSVPAFVLASDLTVDVPGHGKVL 182
Cdd:PRK13969  90 MCGHGSIGAATCAVETGIVKVEEP---YTHIKLEAPAGMINARVKVEDGKA-KEVSIVNVPAFLYKKDVEIDVPDYGKVT 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542996 183 VDIAYGGAFYAFVSAEKLGLDVCSAKTRDLVDAASALTGAVKAQFKINHPESE-----DLGFLYGsiltdgkDAYSEEAT 257
Cdd:PRK13969 166 LDISFGGSFFAIVDAEQLGIKISPANSQKLNDLGMKIRHAVNEQIEIKHPVLEhiktvDLVEIYD-------EAKHPDAD 238

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 755542996 258 -TNICVFADEQVDRSPTGSGVTARIALQYHKGLLQLNQtRAFKSSATGSVFTG 309
Cdd:PRK13969 239 yKNVVIFGQGQVDRSPCGTGTSAKMATLYAKGKLKVGE-EFVYESIIGTKFKG 290
 
Name Accession Description Interval E-value
Pro_racemase pfam05544
Proline racemase; This family consists of proline racemase (EC 5.1.1.4) proteins which ...
 22-314 4.18e-133

Proline racemase; This family consists of proline racemase (EC 5.1.1.4) proteins which catalyze the interconversion of L- and D-proline in bacteria. This family also contains several similar eukaryotic proteins including Swiss:Q9NCP4 a sequence with B-cell mitogenic properties which has been characterized as a co-factor-independent proline racemase.


Pssm-ID: 398923  Cd Length: 325  Bit Score: 382.03  E-value: 4.18e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542996   22 VVDMHTGGEPLRIVHAGCPEVAGPTLLAKRRYMRQHLDYIRRRLVFEPRGHRDMYGAILVPSELPDAHLGVLFLHNEGYS 101
Cdd:pfam05544   1 VVDSHTEGEPGRVVVGGVPPLPGATMAEKRRYFARDHDHLRRFLMFEPRGHDMMSGALLVPPKRPDADAGVIFMEPSGYL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542996  102 SMCGHAVLALGRFALDFGLVPAPpkgAREAQVNIHCPCGLVTAFVECEGGRsCGPVRFHSVPAFVLASDLTVDVPGHGKV 181
Cdd:pfam05544  81 PMCGHNTIGVVTVLLETGIVPPQ---EPETRLNLETPAGLVEARAECRDGK-VERVSLRNVPSFVYALDVEVEVPGLGRV 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542996  182 LVDIAYGGAFYAFVSAEKLGLDVCSAKTRDLVDAASALTGAVKAQFKINHPESEDLGFLYGSILTDGKDAYsEEATTNIC 261
Cdd:pfam05544 157 RVDIAYGGNFYAIVDAEQLGFDIEPAEARELVAAGEKIRDALNEQLKVVHPENPDIRGVSHVQLTGPPTRA-EAHARNAV 235

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 755542996  262 VFADEQVDRSPTGSGVTARIALQYHKGLLQLNQTRAFKsSATGSVFTGCAVRL 314
Cdd:pfam05544 236 IIGPGAIDRSPCGTGTSARMAQLHAKGKLKVGETFVHE-SIIGSEFEGRVEGE 287
PrdF COG3938
Proline racemase/hydroxyproline epimerase [Amino acid transport and metabolism];
19-313 1.90e-119

Proline racemase/hydroxyproline epimerase [Amino acid transport and metabolism];


Pssm-ID: 443139  Cd Length: 335  Bit Score: 347.86  E-value: 1.90e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542996  19 ALSVVDMHTGGEPLRIVHAGCPEVAGPTLLAKRRYMRQHLDYIRRRLVFEPRGHRDMYGAILVPSELPDAHLGVLFLHNE 98
Cdd:COG3938    6 TITTIDAHTEGEPTRVVTGGVPPLPGNTMLEKRRYFAENYDWLRRLLMFEPRGHADMSGALLVPPTRPDADFGVIFMETS 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542996  99 GYSSMCGHAVLALGRFALDFGLVPAPPKgarEAQVNIHCPCGLVTAFVECEGGRsCGPVRFHSVPAFVLASDLTVDVPGH 178
Cdd:COG3938   86 GYLPMCGHGTIGVATVLLETGLVPMTEP---VTEVVLDTPAGLVRARAEVEDGK-VESVTFENVPSFVYALDVEVEVPGL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542996 179 GKVLVDIAYGGAFYAFVSAEKLGLDVCSAKTRDLVDAASALTGAVKAQFKINHPESEDLGFLYGSILTDgkDAYSEEATT 258
Cdd:COG3938  162 GTVTVDIAYGGNFYAIVDAQQLGLDLEPENARELIRLGLEIRDAANEQLEVVHPENPDINGVSHVEFTG--PPTDPDADA 239

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 755542996 259 -NICVFADEQVDRSPTGSGVTARIALQYHKGLLQLNQTRAFkSSATGSVFTGCAVR 313
Cdd:COG3938  240 rNAVVFGPGAIDRSPCGTGTSARMALLHARGELKVGETFVH-ESIIGSRFTGRILE 294
PRK13969 PRK13969
proline racemase; Provisional
 23-309 2.62e-73

proline racemase; Provisional


Pssm-ID: 184427 [Multi-domain]  Cd Length: 334  Bit Score: 230.13  E-value: 2.62e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542996  23 VDMHTGGEPLRIVHAGCPEVAGPTLLAKRRYMRQHLDYIRRRLVFEPRGHRDMYGAILVPSELPDAHLGVLFLHNEGYSS 102
Cdd:PRK13969  10 IDSHTMGEPTRIVVGGLPKIPGKTMAEKKEYLEENNDSLRTALMSEPRGHNDMFGSIYTEPADETADFGIIFMDGGGYLN 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542996 103 MCGHAVLALGRFALDFGLVPAPPKgarEAQVNIHCPCGLVTAFVECEGGRScGPVRFHSVPAFVLASDLTVDVPGHGKVL 182
Cdd:PRK13969  90 MCGHGSIGAATCAVETGIVKVEEP---YTHIKLEAPAGMINARVKVEDGKA-KEVSIVNVPAFLYKKDVEIDVPDYGKVT 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542996 183 VDIAYGGAFYAFVSAEKLGLDVCSAKTRDLVDAASALTGAVKAQFKINHPESE-----DLGFLYGsiltdgkDAYSEEAT 257
Cdd:PRK13969 166 LDISFGGSFFAIVDAEQLGIKISPANSQKLNDLGMKIRHAVNEQIEIKHPVLEhiktvDLVEIYD-------EAKHPDAD 238

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 755542996 258 -TNICVFADEQVDRSPTGSGVTARIALQYHKGLLQLNQtRAFKSSATGSVFTG 309
Cdd:PRK13969 239 yKNVVIFGQGQVDRSPCGTGTSAKMATLYAKGKLKVGE-EFVYESIIGTKFKG 290
PRK13971 PRK13971
4-hydroxyproline epimerase;
23-321 5.72e-58

4-hydroxyproline epimerase;


Pssm-ID: 184428  Cd Length: 333  Bit Score: 190.55  E-value: 5.72e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542996  23 VDMHTGGEPLRIVHAGCPEVAGPTLLAKRRYMRQHLDYIRRRLVFEPRGHRDMYGAILVPSELPDAHLGVLFLHNEGYSS 102
Cdd:PRK13971   9 IDAHTCGNPVRLVAGGGPLLQGATMSEKRAHFLREYDWIRTGLMFEPRGHDMMSGSILYPPTRPDCDFAILFIETSGCLP 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542996 103 MCGHAVLALGRFALDFGLVpaPPKgaREAQVNIHCPCGLVTAFVECEGGRSCGpVRFHSVPAFVLASDLTVDVPGHGKVL 182
Cdd:PRK13971  89 MCGHGTIGTVTAAIEEGLV--TPK--TPGKLRLDTPAGLVDIEYEQDGEKVES-VRLTNVPSYLAAEDLEVEIPGLGPLK 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542996 183 VDIAYGGAFYAFVSAEK--LGLDVCSAKtrDLVDAASALTGAVKAQFKINHPESEDLGFLYGSILTDgkDAYSEEATTNI 260
Cdd:PRK13971 164 VDVAYGGNFYAIVEPQEnfPGLDHYSAS--DILRWSPVLRQALNEKYEFVHPEDPRIRGVSHVLWTG--KPISPGADARN 239

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 755542996 261 CVFA-DEQVDRSPTGSGVTARIALQYHKGllQLNQTRAF-KSSATGSVFTGC---AVRL------LPSNGGY 321
Cdd:PRK13971 240 AVFYgDKAIDRSPCGTGTSARMAQLAAKG--KLKVGDEFvHESIIGSLFEGRveaAATVggrpaiLPSIEGW 309
PRK13970 PRK13970
4-hydroxyproline epimerase;
20-325 1.66e-30

4-hydroxyproline epimerase;


Pssm-ID: 172473  Cd Length: 311  Bit Score: 117.82  E-value: 1.66e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542996  20 LSVVDMHTGGEPLRIVHAGCPEVAGPTLLAKRRYMRQHLDYIRRRLVFEPRGHRDMYGAILVPSELPDAHLGVLFLHNEG 99
Cdd:PRK13970   5 IQIIDSHTGGEPTRLVVSGFPSLGGGTMAERRDVLAREHDRYRTACILEPRGSDVLVGALLCEPVSPDAAAGVIFFNNSG 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542996 100 YSSMCGHAVLALGRFALDFGLVpAPpkGAREaqvnIHCPCGLVTAFVECEGGrscgpVRFHSVPAFVLASDLTVDVPGHG 179
Cdd:PRK13970  85 YLGMCGHGTIGVVRTLHHMGRI-GP--GVHR----IETPVGTVEATLHDDLS-----VSVRNVLAYRHAKDVVVDVPGYG 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542996 180 KVLVDIAYGGAFYAFVSAEklGLDVCSAKTRDLVDAASA---------LTGAVKAQfkINH-------PESEDLGFlygs 243
Cdd:PRK13970 153 PVKGDIAWGGNWFFLISDH--GQRVAGDNVAALTAYASAvragleragITGANGGE--IDHielfaddPEHDSRSF---- 224

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542996 244 ILTDGKdAYseeattnicvfadeqvDRSPTGSGVTARIALQYHKGLLQLNQTRAfKSSATGSVFTGCAVRllpSNGGYKN 323
Cdd:PRK13970 225 VLCPGH-AY----------------DRSPCGTGTSAKLACLAADGKLAPGVVWR-QASVIGSVFSASYAA---AEGGIVP 283


                 ..
gi 755542996 324 TV 325
Cdd:PRK13970 284 TI 285
PrpF pfam04303
PrpF protein; PrpF is a protein found in the 2-methylcitrate pathway. It is structurally ...
 78-203 4.03e-04

PrpF protein; PrpF is a protein found in the 2-methylcitrate pathway. It is structurally similar to DAP epimerase and proline racemase. This protein is likely to acts to isomerize trans-aconitate to cis-aconitate.


Pssm-ID: 398133  Cd Length: 384  Bit Score: 41.77  E-value: 4.03e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542996   78 AILVPSELPDAHLGVLF----LHNE--GYSSMCGHAVLALGRFALDFGLVPA---PPKG---AREAQVNIHcpcGLVTAF 145
Cdd:pfam04303  67 VIISKSSDPDHDVDYLFgqvsIDEPfvDWTGNCGNLSAAVGPFAIEAGLVDAariPHRGvtaVRIWQVNIG---KTIIAH 143

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755542996  146 VECEGG--RSCGPVRFHSVPA--------FVLASDL-------------TVDVPGHGKVLVDIAYGGAFYAFVSAEKLGL 202
Cdd:pfam04303 144 VPVPNGqvQEEGDFEIDGVPFpaaevaleFLDPADDgtgamfptgnlidDLDVPGLGTIEATCINAGIPTVFVDAEALGY 223


                  .
gi 755542996  203 D 203
Cdd:pfam04303 224 T 224
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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