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Conserved domains on  [gi|767913247|ref|XP_011508652|]
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trafficking protein particle complex subunit 12 isoform X1 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 504-649 3.66e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 55.58  E-value: 3.66e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247 504 SRLGRVMYSMANCLLLMKDYVLAVEAYHSVIKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQDVekvtqkLDGLQGKIM 583
Cdd:COG4783    1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDN-PEAFALLGEILLQLGDLDEAIVLLHEA------LELDPDEPE 73

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767913247 584 VLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRH 649
Cdd:COG4783   74 ARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
PHA03169 super family cl27451
hypothetical protein; Provisional
 3-174 1.76e-07

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PHA03169:

Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 54.21  E-value: 1.76e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247   3 DAGGGEETPAPEAPHPPQLAPPEEQGLLFQEEtiDLGGDEFGSEENETASEGSSPlaDKLNEHMMESVliSDSPNSEGDA 82
Cdd:PHA03169  92 PSGSGSESVGSPTPSPSGSAEELASGLSPENT--SGSSPESPASHSPPPSPPSHP--GPHEPAPPESH--NPSPNQQPSS 165

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247  83 GDLGRVRDEAEPGGEGDPGPEPAGTPSPSGEADGDCAPEDAAPSSGGAPRQDAAREVPG----------SEAARPEQE-P 151
Cdd:PHA03169 166 FLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSpntqqaveheDEPTEPEREgP 245

                        170       180
                 ....*....|....*....|...
gi 767913247 152 PVAEPVPVCTIFSQRAPPASGDG 174
Cdd:PHA03169 246 PFPGHRSHSYTVVGWKPSTRPGG 268
PRK07003 super family cl35530
DNA polymerase III subunit gamma/tau;
93-264 1.46e-03

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK07003:

Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 41.76  E-value: 1.46e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247  93 EPGGEGDPGPEPAGTPSPSGEADgdcAPEDAAPSSGGAPRQDAAREVPG--SEAARPEQEPPVAEPVPVCTIfSQRAPPA 170
Cdd:PRK07003 359 EPAVTGGGAPGGGVPARVAGAVP---APGARAAAAVGASAVPAVTAVTGaaGAALAPKAAAAAAATRAEAPP-AAPAPPA 434

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247 171 SGDGFEPQMVKSPSF--GGASEASARTPPQVVQPSPSLSTFFGDTAASHSLASDFFDSFTTSAFISVSnpgaGSPAPASP 248
Cdd:PRK07003 435 TADRGDDAADGDAPVpaKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAA----TPAAVPDA 510

                        170
                 ....*....|....*.
gi 767913247 249 PPLAVPGTEGRPEPVA 264
Cdd:PRK07003 511 RAPAAASREDAPAAAA 526
 
Name Accession Description Interval E-value
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 504-649 3.66e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 55.58  E-value: 3.66e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247 504 SRLGRVMYSMANCLLLMKDYVLAVEAYHSVIKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQDVekvtqkLDGLQGKIM 583
Cdd:COG4783    1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDN-PEAFALLGEILLQLGDLDEAIVLLHEA------LELDPDEPE 73

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767913247 584 VLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRH 649
Cdd:COG4783   74 ARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
PHA03169 PHA03169
hypothetical protein; Provisional
 3-174 1.76e-07

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 54.21  E-value: 1.76e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247   3 DAGGGEETPAPEAPHPPQLAPPEEQGLLFQEEtiDLGGDEFGSEENETASEGSSPlaDKLNEHMMESVliSDSPNSEGDA 82
Cdd:PHA03169  92 PSGSGSESVGSPTPSPSGSAEELASGLSPENT--SGSSPESPASHSPPPSPPSHP--GPHEPAPPESH--NPSPNQQPSS 165

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247  83 GDLGRVRDEAEPGGEGDPGPEPAGTPSPSGEADGDCAPEDAAPSSGGAPRQDAAREVPG----------SEAARPEQE-P 151
Cdd:PHA03169 166 FLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSpntqqaveheDEPTEPEREgP 245

                        170       180
                 ....*....|....*....|...
gi 767913247 152 PVAEPVPVCTIFSQRAPPASGDG 174
Cdd:PHA03169 246 PFPGHRSHSYTVVGWKPSTRPGG 268
tol_pal_ybgF TIGR02795
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ...
 511-570 1.08e-04

tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.


Pssm-ID: 188247 [Multi-domain]  Cd Length: 117  Bit Score: 42.27  E-value: 1.08e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767913247  511 YSMANCLLLMKDYVLAVEAYHSVIKYYPEQE--PQLLSGIGRISLQIGDIKTAEKYFQDVEK 570
Cdd:TIGR02795  41 YWLGEAYYAQGDYADAAKAFLAVVKKYPKSPkaPDALLKLGMSLQELGDKEKAKATLQQVIK 102
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
93-264 1.46e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 41.76  E-value: 1.46e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247  93 EPGGEGDPGPEPAGTPSPSGEADgdcAPEDAAPSSGGAPRQDAAREVPG--SEAARPEQEPPVAEPVPVCTIfSQRAPPA 170
Cdd:PRK07003 359 EPAVTGGGAPGGGVPARVAGAVP---APGARAAAAVGASAVPAVTAVTGaaGAALAPKAAAAAAATRAEAPP-AAPAPPA 434

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247 171 SGDGFEPQMVKSPSF--GGASEASARTPPQVVQPSPSLSTFFGDTAASHSLASDFFDSFTTSAFISVSnpgaGSPAPASP 248
Cdd:PRK07003 435 TADRGDDAADGDAPVpaKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAA----TPAAVPDA 510

                        170
                 ....*....|....*.
gi 767913247 249 PPLAVPGTEGRPEPVA 264
Cdd:PRK07003 511 RAPAAASREDAPAAAA 526
 
Name Accession Description Interval E-value
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 504-649 3.66e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 55.58  E-value: 3.66e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247 504 SRLGRVMYSMANCLLLMKDYVLAVEAYHSVIKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQDVekvtqkLDGLQGKIM 583
Cdd:COG4783    1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDN-PEAFALLGEILLQLGDLDEAIVLLHEA------LELDPDEPE 73

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767913247 584 VLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRH 649
Cdd:COG4783   74 ARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
508-664 1.65e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 55.78  E-value: 1.65e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247 508 RVMYSMANCLLLMKDYVLAVEAYHSVIKYYPEqEPQLLSGIGRISLQIGDIKTAEKYFQDVEKVTQKLdglqgkIMVLMN 587
Cdd:COG0457    9 EAYNNLGLAYRRLGRYEEAIEDYEKALELDPD-DAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------AEALNN 81

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767913247 588 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRHYlheSVLFNLTTMYE 664
Cdd:COG0457   82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDA---DALYNLGIALE 155
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 499-688 5.95e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 54.74  E-value: 5.95e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247 499 IRLWRSRLGR------VMYSMANCLLLMKDYVLAVEAYHSVIKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQDVEKVT 572
Cdd:COG2956   62 IRIHQKLLERdpdraeALLELAQDYLKAGLLDRAEELLEKLLELDPDD-AEALRLLAEIYEQEGDWEKAIEVLERLLKLG 140

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247 573 QKldglqgKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRHYlh 652
Cdd:COG2956  141 PE------NAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYL-- 212

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 767913247 653 eSVLFNLTTMYElESSRSMQKKQALLEAVAGKEGDS 688
Cdd:COG2956  213 -PALPRLAELYE-KLGDPEEALELLRKALELDPSDD 246
PHA03169 PHA03169
hypothetical protein; Provisional
 3-174 1.76e-07

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 54.21  E-value: 1.76e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247   3 DAGGGEETPAPEAPHPPQLAPPEEQGLLFQEEtiDLGGDEFGSEENETASEGSSPlaDKLNEHMMESVliSDSPNSEGDA 82
Cdd:PHA03169  92 PSGSGSESVGSPTPSPSGSAEELASGLSPENT--SGSSPESPASHSPPPSPPSHP--GPHEPAPPESH--NPSPNQQPSS 165

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247  83 GDLGRVRDEAEPGGEGDPGPEPAGTPSPSGEADGDCAPEDAAPSSGGAPRQDAAREVPG----------SEAARPEQE-P 151
Cdd:PHA03169 166 FLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSpntqqaveheDEPTEPEREgP 245

                        170       180
                 ....*....|....*....|...
gi 767913247 152 PVAEPVPVCTIFSQRAPPASGDG 174
Cdd:PHA03169 246 PFPGHRSHSYTVVGWKPSTRPGG 268
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
508-680 1.93e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 52.70  E-value: 1.93e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247 508 RVMYSMANCLLLMKDYVLAVEAYHSVIKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQdvekvtQKLDGLQGKIMVLMN 587
Cdd:COG0457   43 EALYNLGLAYLRLGRYEEALADYEQALELDPDD-AEALNNLGLALQALGRYEEALEDYD------KALELDPDDAEALYN 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247 588 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRHYLHESVLFNLTTMYELES 667
Cdd:COG0457  116 LGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEV 195

                        170
                 ....*....|...
gi 767913247 668 SRSMQKKQALLEA 680
Cdd:COG0457  196 LLALLLALEQALR 208
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 511-653 9.19e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 47.80  E-value: 9.19e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247 511 YSMANCLLLMKDYVLAVEAYHSVIKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQDVEKVTQKldglqgKIMVLMNSAF 590
Cdd:COG2956   12 YFKGLNYLLNGQPDKAIDLLEEALELDPET-VEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLELAQ 84

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767913247 591 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPR--HYLHE 653
Cdd:COG2956   85 DYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEnaHAYCE 149
PHA03264 PHA03264
envelope glycoprotein D; Provisional
 91-205 1.65e-05

envelope glycoprotein D; Provisional


Pssm-ID: 223029 [Multi-domain]  Cd Length: 416  Bit Score: 47.69  E-value: 1.65e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247  91 EAEPGGEGDPGPEpAGTPSPSGEADGDcAPEDAAPSSGGAPRQDAAREVPGSEAARPEQEPPvAEPVPvctifsqrAPPA 170
Cdd:PHA03264 259 EESKGYEPPPAPS-GGSPAPPGDDRPE-AKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAG-GEPKP--------GPPR 327

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 767913247 171 SGdgfePQMVKsPSFGGASEASARTPPQVVQPSPS 205
Cdd:PHA03264 328 PA----PDADR-PEGWPSLEAITFPPPTPATPAVP 357
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 504-570 4.98e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 43.06  E-value: 4.98e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767913247 504 SRLGRVMYSMANCLLLMKDYVLAVEAYHSVIKYYPEQE--PQLLSGIGRISLQIGDIKTAEKYFQDVEK 570
Cdd:COG1729   27 PLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkaPDALLKLGLSYLELGDYDKARATLEELIK 95
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 515-613 5.27e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 44.18  E-value: 5.27e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247 515 NCLLLMKDYVLAVEAYHSVIKYYPEqEPQLLSGIGRISLQIGDIKTAEKYFQDVekvtqkLDGLQGKIMVLMNSAFLHLG 594
Cdd:COG5010   62 NLYNKLGDFEESLALLEQALQLDPN-NPELYYNLALLYSRSGDKDEAKEYYEKA------LALSPDNPNAYSNLAALLLS 134

                         90
                 ....*....|....*....
gi 767913247 595 QNNFAEAHRFFTEILRMDP 613
Cdd:COG5010  135 LGQDDEAKAALQRALGTSP 153
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 4-202 8.14e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 46.13  E-value: 8.14e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247   4 AGGGEETPAP-------EAPHPPQLAPPEEQGllfqeetidlggdefGSEENETASEGSSPLADKLNEHMMESVLISDSP 76
Cdd:PRK07764 594 AAGGEGPPAPassgppeEAARPAAPAAPAAPA---------------APAPAGAAAAPAEASAAPAPGVAAPEHHPKHVA 658

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247  77 NSEGDAGDLGRVRDEAEPGGEGD-PGPEPAGTPSPSGEADGDCAPEDAA-------PSSGGAPR---QDAAREVPGSEAA 145
Cdd:PRK07764 659 VPDASDGGDGWPAKAGGAAPAAPpPAPAPAAPAAPAGAAPAQPAPAPAAtppagqaDDPAAQPPqaaQGASAPSPAADDP 738

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 767913247 146 RPEQEPPVAEPVPVCTIFSQRAPPASGDGFEPQMVKSPSFGGASEASARTPPQVVQP 202
Cdd:PRK07764 739 VPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDD 795
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 74-208 8.87e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 45.75  E-value: 8.87e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247  74 DSPNSEGDAGDLGRVRDEAEPGG--EGDPGPEPAGTPSPSGEADGDCAPEDAAPSSGGAPRQDAAREVPGSEAARPEQEP 151
Cdd:PRK07764 630 AGAAAAPAEASAAPAPGVAAPEHhpKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATP 709

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767913247 152 PVA-------EPVPVCTIFSQRAPPASGDGFEPQMVKSPSFGGASEASARTPPQVVQPSPSLST 208
Cdd:PRK07764 710 PAGqaddpaaQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAA 773
tol_pal_ybgF TIGR02795
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ...
 511-570 1.08e-04

tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.


Pssm-ID: 188247 [Multi-domain]  Cd Length: 117  Bit Score: 42.27  E-value: 1.08e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767913247  511 YSMANCLLLMKDYVLAVEAYHSVIKYYPEQE--PQLLSGIGRISLQIGDIKTAEKYFQDVEK 570
Cdd:TIGR02795  41 YWLGEAYYAQGDYADAAKAFLAVVKKYPKSPkaPDALLKLGMSLQELGDKEKAKATLQQVIK 102
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 492-682 1.09e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 45.37  E-value: 1.09e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247 492 QEGRQASIRLWRSRLGRVMYSMANCLLLMKDYVLAVEAYHSVIKYYPEqEPQLLSGIGRISLQIGDIKTAEKYFQDVEKV 571
Cdd:COG3914   63 AAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPD-NAEALFNLGNLLLALGRLEEALAALRRALAL 141

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247 572 TQKLdglqgkIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRH-Y 650
Cdd:COG3914  142 NPDF------AEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNaD 215

                        170       180       190
                 ....*....|....*....|....*....|..
gi 767913247 651 LHESVLFnltTMYELESSRSMQKKQALLEAVA 682
Cdd:COG3914  216 AHSNLLF---ALRQACDWEVYDRFEELLAALA 244
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 89-205 1.91e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 44.98  E-value: 1.91e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247  89 RDEAEPGGEGDPGPEPAGTPSPSGEADGDCAPEDAAPSSGGAPRQDAAREVPGSEAARPEQEPPVAEPVPVCTIFSQRAP 168
Cdd:PRK07764 377 RLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSP 456

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 767913247 169 PASGDGFEPQMVKSPSFGGASEASARTPPQVVQPSPS 205
Cdd:PRK07764 457 PPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAA 493
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 517-613 3.26e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 40.75  E-value: 3.26e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247 517 LLLMKDYVLAVEAYHSVIKYYPEQE--PQLLSGIGRISLQIGDIKTAEKYFQDVEKV---TQKLDglqgkiMVLMNSAFL 591
Cdd:COG1729    3 LLKAGDYDEAIAAFKAFLKRYPNSPlaPDALYWLGEAYYALGDYDEAAEAFEKLLKRypdSPKAP------DALLKLGLS 76

                         90       100
                 ....*....|....*....|..
gi 767913247 592 HLGQNNFAEAHRFFTEILRMDP 613
Cdd:COG1729   77 YLELGDYDKARATLEELIKKYP 98
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
516-614 3.38e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 40.15  E-value: 3.38e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247 516 CLLLMKDYVLAVEAYHSVIKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQdvekvTQKLDglQGKIMVLMNSAFLHLGQ 595
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDN-ADALNNLGLLLLEQGRYDEAIALEK-----ALKLD--PNNAEALLNLAELLLEL 72

                         90
                 ....*....|....*....
gi 767913247 596 NNFAEAHRFFTEILRMDPR 614
Cdd:COG3063   73 GDYDEALAYLERALELDPS 91
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 91-206 3.63e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 43.82  E-value: 3.63e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247  91 EAEPGGEGDPGPEPAGTPSPSGEADGDCAPEDAAPSSGGAPRQDAAREVPGSEAARPEQEPPVAEPVPVCTIFSQRAPPA 170
Cdd:PRK07764 393 APAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAA 472

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 767913247 171 SGDGfEPQMVKSPSFGGASEASARTPPQVVQPSPSL 206
Cdd:PRK07764 473 APEP-TAAPAPAPPAAPAPAAAPAAPAAPAAPAGAD 507
PHA03379 PHA03379
EBNA-3A; Provisional
 1-204 4.95e-04

EBNA-3A; Provisional


Pssm-ID: 223066 [Multi-domain]  Cd Length: 935  Bit Score: 43.51  E-value: 4.95e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247   1 MEDAGGGEET----------PAPEAPHPPQLAPPEEqgLLFQEETIDLGGDEFGSEENETASEGSSPLADklnEHMMESV 70
Cdd:PHA03379 391 LMRAGKLTERarealekasePTYGTPRPPVEKPRPE--VPQSLETATSHGSAQVPEPPPVHDLEPGPLHD---QHSMAPC 465

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247  71 LISDSPNS---EGDAGDLgrvrdeaEPGGEGDPGPEPAGTPSPSGEAdgdCAPEDAAPSsggaprqdaarEVPGSEAARP 147
Cdd:PHA03379 466 PVAQLPPGplqDLEPGDQ-------LPGVVQDGRPACAPVPAPAGPI---VRPWEASLS-----------QVPGVAFAPV 524

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767913247 148 EQEPPVAEPVPVCTIFSQR----APPA---SGDGfEPQMVKSPSFGGASEASARTPPQVVQPSP 204
Cdd:PHA03379 525 MPQPMPVEPVPVPTVALERpvcpAPPLiamQGPG-ETSGIVRVRERWRPAPWTPNPPRSPSQMS 587
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
553-650 5.61e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.38  E-value: 5.61e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247 553 LQIGDIKTAEKYFQDVekvtQKLDGlqGKIMVLMNSAFLHLGQNNFAEAHRFfTEILRMDPRNAVANNNAAVCLLYLGKL 632
Cdd:COG3063    3 LKLGDLEEAEEYYEKA----LELDP--DNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDY 75

                         90
                 ....*....|....*...
gi 767913247 633 KDSLRQLEAMVQQDPRHY 650
Cdd:COG3063   76 DEALAYLERALELDPSAL 93
PHA03247 PHA03247
large tegument protein UL36; Provisional
 10-221 6.26e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.39  E-value: 6.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247   10 TPAPEAPHPPQLAPPEEQGLLFQEEtidlGGDEFGSEENETASEGSSPLADKLNEHMMESVLISDS---------PNSEG 80
Cdd:PHA03247 2615 SPLPPDTHAPDPPPPSPSPAANEPD----PHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQAssppqrprrRAARP 2690

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247   81 DAGDLGRVRDEAEPGGEGDPGPEPA--GTPSPSGEADGDCAPEdAAPSSGGAPRQDAAREVPGSEAARPEQEPPVAEPVP 158
Cdd:PHA03247 2691 TVGSLTSLADPPPPPPTPEPAPHALvsATPLPPGPAAARQASP-ALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAP 2769

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767913247  159 vctifsqrAPPASGDGFEPQMVKSPSFGGASEASArTPPQVVQPSPSLSTFFGDTAASHSLAS 221
Cdd:PHA03247 2770 --------APPAAPAAGPPRRLTRPAVASLSESRE-SLPSPWDPADPPAAVLAPAAALPPAAS 2823
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 517-697 7.03e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.15  E-value: 7.03e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247  517 LLLMKDYVLAVEAYHSVIKYYPEqEPQLLSGIGRISLQIGDIKTAEKYFQDV-EKVTQKLDGLQGKIMVlmnsaflHLGQ 595
Cdd:TIGR02917 203 LLSLGNIELALAAYRKAIALRPN-NIAVLLALATILIEAGEFEEAEKHADALlKKAPNSPLAHYLKALV-------DFQK 274

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247  596 NNFAEAHRFFTEILRMDPRNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRhyLHESVLfnLTTMYELESSRSMQkKQ 675
Cdd:TIGR02917 275 KNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPN--SHQARR--LLASIQLRLGRVDE-AI 349

                         170       180
                  ....*....|....*....|..
gi 767913247  676 ALLEAVAGKegDSFNTQCLKLA 697
Cdd:TIGR02917 350 ATLSPALGL--DPDDPAALSLL 369
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
5-205 1.22e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 42.17  E-value: 1.22e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247   5 GGGEETPAPEAPHPPQLAPPEEQGLLFQEETidlggdefgseeneTASEGSSPLADKLNEHMMESVLISDSPNSEGDAGd 84
Cdd:PRK12323 368 SGGGAGPATAAAAPVAQPAPAAAAPAAAAPA--------------PAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEA- 432

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247  85 LGRVRDEAEPGGEGDPGPEPAGTPSPSGeadgdcAPEDAAPSSGGAPRQDA---AREVPGSEAARPEQEPPVAEPVPVCt 161
Cdd:PRK12323 433 LAAARQASARGPGGAPAPAPAPAAAPAA------AARPAAAGPRPVAAAAAaapARAAPAAAPAPADDDPPPWEELPPE- 505

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 767913247 162 iFSQRAPPASGDGFEPQMVKSPSFGGASEASARTPPQVVQPSPS 205
Cdd:PRK12323 506 -FASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAA 548
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
93-264 1.46e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 41.76  E-value: 1.46e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247  93 EPGGEGDPGPEPAGTPSPSGEADgdcAPEDAAPSSGGAPRQDAAREVPG--SEAARPEQEPPVAEPVPVCTIfSQRAPPA 170
Cdd:PRK07003 359 EPAVTGGGAPGGGVPARVAGAVP---APGARAAAAVGASAVPAVTAVTGaaGAALAPKAAAAAAATRAEAPP-AAPAPPA 434

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247 171 SGDGFEPQMVKSPSF--GGASEASARTPPQVVQPSPSLSTFFGDTAASHSLASDFFDSFTTSAFISVSnpgaGSPAPASP 248
Cdd:PRK07003 435 TADRGDDAADGDAPVpaKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAA----TPAAVPDA 510

                        170
                 ....*....|....*.
gi 767913247 249 PPLAVPGTEGRPEPVA 264
Cdd:PRK07003 511 RAPAAASREDAPAAAA 526
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 12-217 1.56e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.08  E-value: 1.56e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247   12 APEAPHPPQLAPPEEQGLLFQEETIDLGGDEFGSEENETASEGSSPLADKLNEHMMESVLISDSPNSEGDAGDLGRVRDE 91
Cdd:PHA03307   18 GEFFPRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAP 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247   92 AEPGGEGDPGPEPAGTPSPsgeadgdcaPEDAAPSSGGAPRQDAARevpgSEAARPEQEPPVAepvpvctifSQRAPPAS 171
Cdd:PHA03307   98 ASPAREGSPTPPGPSSPDP---------PPPTPPPASPPPSPAPDL----SEMLRPVGSPGPP---------PAASPPAA 155

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 767913247  172 GDGFEPQMVKSPSFGGASEASARTPPQVVQPSPSLSTFFGDTAASH 217
Cdd:PHA03307  156 GASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAA 201
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 73-204 1.97e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.51  E-value: 1.97e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247  73 SDSPNSEGDAGDLGRVRDEAEPGGEGDPGPEPAGTPSPSGEADGDCAPEDAAPSSG----GAPRQDAAREVPGSEAARPE 148
Cdd:PRK07764 641 AAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAapaqPAPAPAATPPAGQADDPAAQ 720

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 767913247 149 QEPPVAEPVPVCTiFSQRAPPASGDGFEPQMVKSPSFGGASEASARTPPQVVQPSP 204
Cdd:PRK07764 721 PPQAAQGASAPSP-AADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPP 775
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 3-330 2.41e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 41.31  E-value: 2.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247    3 DAGGGEETPAPEAPHPPQLAPPEEQGLLFQEETIDLGGDEFGSEENETASEGSSPLAdklnehmmesvliSDSPNSEGDA 82
Cdd:PHA03307  107 TPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVA-------------SDAASSRQAA 173

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247   83 GDLGRVRDEAEPGGegdPGPEPAGTPSPSGEADGDCAPED-----AAPSSGGAPRQDAAREVPG-------SEAARPEQE 150
Cdd:PHA03307  174 LPLSSPEETARAPS---SPPAEPPPSTPPAAASPRPPRRSspisaSASSPAPAPGRSAADDAGAsssdsssSESSGCGWG 250

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247  151 PPVAEPVPVCTIFSQRAPPASGDGFEPQMVKSPSFGGASEASARTPPqvvqPSPSLSTFFGDTAASHSLASDFFDSFTTS 230
Cdd:PHA03307  251 PENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPS----PSPSSPGSGPAPSSPRASSSSSSSRESSS 326

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247  231 AFISVSNPGAGSPAPASPPPLAVPGTEGRPEPVAMRGPQAAAPPASPEPFAhiQAVFAGSDDPFATALSMSEMDRRNDAw 310
Cdd:PHA03307  327 SSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSS--PAASAGRPTRRRARAAVAGRARRRDA- 403

                         330       340
                  ....*....|....*....|
gi 767913247  311 lPGEATRGVLRAVATQQRGA 330
Cdd:PHA03307  404 -TGRFPAGRPRPSPLDAGAA 422
PHA03291 PHA03291
envelope glycoprotein I; Provisional
 92-209 2.67e-03

envelope glycoprotein I; Provisional


Pssm-ID: 223033 [Multi-domain]  Cd Length: 401  Bit Score: 40.71  E-value: 2.67e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247  92 AEPGGEGDPGPEPAGtpspSGEADGDCAPedAAPSSggAPR-------QDAAREVPGSEAARPEQEPPVAEPVPVCTIF- 163
Cdd:PHA03291 164 AAFPAEGTLAAPPLG----EGSADGSCDP--ALPLS--APRlgpadvfVPATPRPTPRTTASPETTPTPSTTTSPPSTTi 235

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 767913247 164 -----SQRAPPASGDGFEPQMVKSPSFGGaseasARTPPQVVQPSPSLSTF 209
Cdd:PHA03291 236 papstTIAAPQAGTTPEAEGTPAPPTPGG-----GEAPPANATPAPEASRY 281
PRK12495 PRK12495
hypothetical protein; Provisional
 75-194 2.74e-03

hypothetical protein; Provisional


Pssm-ID: 183558 [Multi-domain]  Cd Length: 226  Bit Score: 39.85  E-value: 2.74e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247  75 SPNSEGDAGDlGRVRDEAEPGGEGDPGPEPAGTPSPSGEADGDCAPEDAAPSSGGAPRQDAAREVPGSEAA---RPEQEP 151
Cdd:PRK12495  66 QPVTEDGAAG-DDAGDGAEATAPSDAGSQASPDDDAQPAAEAEAADQSAPPEASSTSATDEAATDPPATAAardGPTPDP 144

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 767913247 152 PVAEPVPVCTIFSQRAPPASGDGFEPQmvKSPSFGGASEASAR 194
Cdd:PRK12495 145 TAQPATPDERRSPRQRPPVSGEPPTPS--TPDAHVAGTLQAAR 185
PHA03169 PHA03169
hypothetical protein; Provisional
 75-151 3.16e-03

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 40.34  E-value: 3.16e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767913247  75 SPNSEGDAGDLGRVRDEAEPGGEGDPGPEPAGTPSPSGEADGDCAPEdaAPSSGGAPRQDAAREVPGSEAARPEQEP 151
Cdd:PHA03169  83 EKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGSSPE--SPASHSPPPSPPSHPGPHEPAPPESHNP 157
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 102-174 3.19e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 40.70  E-value: 3.19e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767913247 102 PEPAGTPSPSGEA---DGDCAPEDAAPSSGGAPRQDAAREVPGSEAARPEQEPPVAEPVPVCTIFSQRAPPASGDG 174
Cdd:PRK14954 382 PSPAGSPDVKKKApepDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSAPLPPSPQASAPRNVASG 457
PHA03378 PHA03378
EBNA-3B; Provisional
 82-204 3.72e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 40.82  E-value: 3.72e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247  82 AGDLGRVRdeaEPGGEGDPGPEPAGTPS---PSGEADGDCAPEDAAPssgGAPRQDAAREVPGSEAARPE-----QEPPV 153
Cdd:PHA03378 728 AAAPGRAR---PPAAAPGRARPPAAAPGrarPPAAAPGRARPPAAAP---GAPTPQPPPQAPPAPQQRPRgaptpQPPPQ 801

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247 154 AEPVPVctIFSQRAPPASgDGFEPQMVKSPSFGGASE---------ASARTPPQVVQPSP 204
Cdd:PHA03378 802 AGPTSM--QLMPRAAPGQ-QGPTKQILRQLLTGGVKRgrpslkkpaALERQAAAGPTPSP 858
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 526-647 3.90e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 38.06  E-value: 3.90e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247 526 AVEAYHSVIKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQDVekvtQKLDGlqGKIMVLMNSAFLHLGQNNFAEAHRFF 605
Cdd:COG4235    2 AIARLRQALAANPND-AEGWLLLGRAYLRLGRYDEALAAYEKA----LRLDP--DNADALLDLAEALLAAGDTEEAEELL 74

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 767913247 606 TEILRMDPRNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDP 647
Cdd:COG4235   75 ERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLP 116
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 100-212 5.00e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 40.08  E-value: 5.00e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247 100 PGPEPAGTPSPSGEADGDCAPEDAAPSSGGAPRQDAAREVPGSEAARPEQEPPVAEPVPVCTIFSQRAPPASGDGFEPQM 179
Cdd:PRK14951 383 RPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAI 462

                         90       100       110
                 ....*....|....*....|....*....|...
gi 767913247 180 VKSPSFGGASEASARTPPQVVQPSPSLSTFFGD 212
Cdd:PRK14951 463 PVRVAPEPAVASAAPAPAAAPAAARLTPTEEGD 495
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
507-575 6.96e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 36.30  E-value: 6.96e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767913247 507 GRVMYSMANCLLLMKDYVLAvEAYHSVIKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQDVEKVTQKL 575
Cdd:COG3063   26 ADALNNLGLLLLEQGRYDEA-IALEKALKLDPNN-AEALLNLAELLLELGDYDEALAYLERALELDPSA 92
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
534-664 7.36e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 38.83  E-value: 7.36e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247 534 IKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQDVEKVTQKLdglqgkIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDP 613
Cdd:COG0457    1 LELDPDD-AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDD------AEALYNLGLAYLRLGRYEEALADYEQALELDP 73

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 767913247 614 RNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRHYlheSVLFNLTTMYE 664
Cdd:COG0457   74 DDAEALNNLGLALQALGRYEEALEDYDKALELDPDDA---EALYNLGLALL 121
PHA03169 PHA03169
hypothetical protein; Provisional
 2-132 7.52e-03

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 39.18  E-value: 7.52e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247   2 EDAGGGEETPAPEAPHPPQLAPPEEQGllfqeETIDlGGDEFGSEENETASEGSSPladklnehmmesvlisdspnSEGD 81
Cdd:PHA03169 176 EEPEPPTSEPEPDSPGPPQSETPTSSP-----PPQS-PPDEPGEPQSPTPQQAPSP--------------------NTQQ 229

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 767913247  82 AGDlgrvrDEAEPGGEGDPGPEPAGTPSPSGEADGDCAPEDAapssGGAPR 132
Cdd:PHA03169 230 AVE-----HEDEPTEPEREGPPFPGHRSHSYTVVGWKPSTRP----GGVPK 271
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 90-204 8.19e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.58  E-value: 8.19e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767913247  90 DEAEPGGEGDPGPEPAGTPSPSGE-ADGDCAPEDAAPSSGGAPRQdaarevPGSEAARPEQEPPVAEPVPvctifSQRAP 168
Cdd:PRK07764 591 APGAAGGEGPPAPASSGPPEEAARpAAPAAPAAPAAPAPAGAAAA------PAEASAAPAPGVAAPEHHP-----KHVAV 659

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 767913247 169 PASGDGFEPQMVKSPSFGGASEASARTPPQVVQPSP 204
Cdd:PRK07764 660 PDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAG 695
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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