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Conserved domains on  [gi|767995718|ref|XP_011523471|]
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dnaJ homolog subfamily C member 7 isoform X1 [Homo sapiens]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 11929115)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  30708253|10517866
SCOP:  3001345

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK10767 super family cl35946
chaperone protein DnaJ; Provisional
321-392 2.55e-21

chaperone protein DnaJ; Provisional


The actual alignment was detected with superfamily member PRK10767:

Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 94.83  E-value: 2.55e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767995718 321 SKRkDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSG-ASAEVQkeeekkFKEVGEAFTILSDPKKKTRYD 392
Cdd:PRK10767   2 AKR-DYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGdKEAEEK------FKEIKEAYEVLSDPQKRAAYD 67
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
113-342 9.54e-21

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 90.84  E-value: 9.54e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 113 LEFAPACHRFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDhekaci 192
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPD------ 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 193 acrNAKALKAKkedGNKAFKEGNYKLAYELYTEALGIDPNNiktnAKLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTYI 272
Cdd:COG0457   75 ---DAEALNNL---GLALQALGRYEEALEDYDKALELDPDD----AEALYNLGLALLELGRYDEAIEAYERALELDPDDA 144
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 273 KAYLRRAQCYMDTEQYEEAVRDYEKVYQTEKTKEHKQLLKNAQLELKKSKRKDYYKILGVDKNASEDEIK 342
Cdd:COG0457  145 DALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAIL 214
Spy super family cl27809
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
11-191 9.36e-14

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG3914:

Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 73.10  E-value: 9.36e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718  11 NRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREgkcHLSLGNAMAACRSFQRALELDHKNAQAQQEFKNANAVMEYE 90
Cdd:COG3914   52 AEAAAAALLALAAGEAAAAAAALLLLAALLELAALL---LQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRL 128
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718  91 KIAETdfekrdfrkvvfCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYEDCI 170
Cdd:COG3914  129 EEALA------------ALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRL 196
                        170       180
                 ....*....|....*....|.
gi 767995718 171 EKAVQFFVQALRMAPDHEKAC 191
Cdd:COG3914  197 EEAIAAYRRALELDPDNADAH 217
 
Name Accession Description Interval E-value
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
321-392 2.55e-21

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 94.83  E-value: 2.55e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767995718 321 SKRkDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSG-ASAEVQkeeekkFKEVGEAFTILSDPKKKTRYD 392
Cdd:PRK10767   2 AKR-DYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGdKEAEEK------FKEIKEAYEVLSDPQKRAAYD 67
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
325-413 3.42e-21

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 94.20  E-value: 3.42e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718  325 DYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYDS-GQDLDEEGM- 402
Cdd:TIGR02349   1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAE------EKFKEINEAYEVLSDPEKRAQYDQfGHAGFNGGGg 74
                          90
                  ....*....|..
gi 767995718  403 -NMGDFDPNNIF 413
Cdd:TIGR02349  75 gGGGGFNGFDIG 86
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
113-342 9.54e-21

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 90.84  E-value: 9.54e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 113 LEFAPACHRFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDhekaci 192
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPD------ 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 193 acrNAKALKAKkedGNKAFKEGNYKLAYELYTEALGIDPNNiktnAKLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTYI 272
Cdd:COG0457   75 ---DAEALNNL---GLALQALGRYEEALEDYDKALELDPDD----AEALYNLGLALLELGRYDEAIEAYERALELDPDDA 144
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 273 KAYLRRAQCYMDTEQYEEAVRDYEKVYQTEKTKEHKQLLKNAQLELKKSKRKDYYKILGVDKNASEDEIK 342
Cdd:COG0457  145 DALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAIL 214
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
325-392 1.36e-20

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 84.83  E-value: 1.36e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767995718  325 DYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSG-ASAEVQkeeekkFKEVGEAFTILSDPKKKTRYD 392
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGdPEAEEK------FKEINEAYEVLSDPEKRAIYD 63
terminal_TopJ NF037946
terminal organelle assembly protein TopJ;
321-413 3.39e-20

terminal organelle assembly protein TopJ;


Pssm-ID: 468284 [Multi-domain]  Cd Length: 440  Bit Score: 92.19  E-value: 3.39e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 321 SKRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYDS-GQDlDE 399
Cdd:NF037946   2 EEKRDYYEVLGVDRDADDQEIKKAFRKLAKKYHPDRNKAPDAA------EIFAEINEAYEVLSNPEKRANYDKyGHD-GV 74
                         90
                 ....*....|....
gi 767995718 400 EGMNMGDFDPNNIF 413
Cdd:NF037946  75 DGEGGFGFDAFDVF 88
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
325-392 7.61e-19

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 82.44  E-value: 7.61e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767995718 325 DYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSG-ASAEVQkeeekkFKEVGEAFTILSDPKKKTRYD 392
Cdd:COG0484    1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPGdPEAEEK------FKEINEAYEVLSDPEKRAAYD 63
DnaJ smart00271
DnaJ molecular chaperone homology domain;
324-387 1.42e-16

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 73.42  E-value: 1.42e-16
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767995718   324 KDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQkeeeKKFKEVGEAFTILSDPKK 387
Cdd:smart00271   1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAE----EKFKEINEAYEVLSDPEK 60
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
325-384 4.84e-15

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 69.11  E-value: 4.84e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 325 DYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQkeeekKFKEVGEAFTILSD 384
Cdd:cd06257    1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEE-----KFKEINEAYEVLSD 55
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
197-297 6.91e-14

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 72.51  E-value: 6.91e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 197 AKALKAKkedGNKAFKEGNYKLAYELYTEALGIDPNNiktnAKLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTYIKAYL 276
Cdd:PLN03088   2 AKDLEDK---AKEAFVDDDFALAVDLYTQAIDLDPNN----AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYL 74
                         90       100
                 ....*....|....*....|.
gi 767995718 277 RRAQCYMDTEQYEEAVRDYEK 297
Cdd:PLN03088  75 RKGTACMKLEEYQTAKAALEK 95
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
11-191 9.36e-14

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 73.10  E-value: 9.36e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718  11 NRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREgkcHLSLGNAMAACRSFQRALELDHKNAQAQQEFKNANAVMEYE 90
Cdd:COG3914   52 AEAAAAALLALAAGEAAAAAAALLLLAALLELAALL---LQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRL 128
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718  91 KIAETdfekrdfrkvvfCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYEDCI 170
Cdd:COG3914  129 EEALA------------ALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRL 196
                        170       180
                 ....*....|....*....|.
gi 767995718 171 EKAVQFFVQALRMAPDHEKAC 191
Cdd:COG3914  197 EEAIAAYRRALELDPDNADAH 217
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
195-295 1.11e-10

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 63.46  E-value: 1.11e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718  195 RNAKALKAKkEDGNKAFKEGNYKLAYELYTEALGIDPNNIktnakLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTYIKA 274
Cdd:TIGR00990 123 RKKYAAKLK-EKGNKAYRNKDFNKAIKLYSKAIECKPDPV-----YYSNRAACHNALGDWEKVVEDTTAALELDPDYSKA 196
                          90       100
                  ....*....|....*....|.
gi 767995718  275 YLRRAQCYMDTEQYEEAVRDY 295
Cdd:TIGR00990 197 LNRRANAYDGLGKYADALLDL 217
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
3-94 4.34e-05

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 45.55  E-value: 4.34e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718   3 PKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAAcrsfQRALELDHKNAQAQQEFKN 82
Cdd:PLN03088  33 PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA----KAALEKGASLAPGDSRFTK 108
                         90
                 ....*....|..
gi 767995718  83 ANAVMEyEKIAE 94
Cdd:PLN03088 109 LIKECD-EKIAE 119
TPR_1 pfam00515
Tetratricopeptide repeat;
238-271 1.74e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.86  E-value: 1.74e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 767995718  238 AKLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTY 271
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
3-205 5.40e-03

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 39.20  E-value: 5.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718    3 PKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALeldhknaqaqQEFKN 82
Cdd:TIGR00990 396 SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCK----------KNFPE 465
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718   83 ANAVMEYekIAETDFEKRDFRKVVFCMDRALEFA----PACHRFKILKAECLAML---GRYPEAQSVASDILRMDSTNAD 155
Cdd:TIGR00990 466 APDVYNY--YGELLLDQNKFDEAIEKFDTAIELEketkPMYMNVLPLINKALALFqwkQDFIEAENLCEKALIIDPECDI 543
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 767995718  156 ALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACIACRNAKALKAKKE 205
Cdd:TIGR00990 544 AVATMAQLLLQQGDVDEALKLFERAAELARTEGELVQAISYAEATRTQIQ 593
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
238-271 5.85e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 34.34  E-value: 5.85e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 767995718   238 AKLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTY 271
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
 
Name Accession Description Interval E-value
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
321-392 2.55e-21

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 94.83  E-value: 2.55e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767995718 321 SKRkDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSG-ASAEVQkeeekkFKEVGEAFTILSDPKKKTRYD 392
Cdd:PRK10767   2 AKR-DYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGdKEAEEK------FKEIKEAYEVLSDPQKRAAYD 67
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
325-413 3.42e-21

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 94.20  E-value: 3.42e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718  325 DYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYDS-GQDLDEEGM- 402
Cdd:TIGR02349   1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAE------EKFKEINEAYEVLSDPEKRAQYDQfGHAGFNGGGg 74
                          90
                  ....*....|..
gi 767995718  403 -NMGDFDPNNIF 413
Cdd:TIGR02349  75 gGGGGFNGFDIG 86
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
113-342 9.54e-21

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 90.84  E-value: 9.54e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 113 LEFAPACHRFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDhekaci 192
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPD------ 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 193 acrNAKALKAKkedGNKAFKEGNYKLAYELYTEALGIDPNNiktnAKLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTYI 272
Cdd:COG0457   75 ---DAEALNNL---GLALQALGRYEEALEDYDKALELDPDD----AEALYNLGLALLELGRYDEAIEAYERALELDPDDA 144
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 273 KAYLRRAQCYMDTEQYEEAVRDYEKVYQTEKTKEHKQLLKNAQLELKKSKRKDYYKILGVDKNASEDEIK 342
Cdd:COG0457  145 DALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAIL 214
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
325-392 1.36e-20

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 84.83  E-value: 1.36e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767995718  325 DYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSG-ASAEVQkeeekkFKEVGEAFTILSDPKKKTRYD 392
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGdPEAEEK------FKEINEAYEVLSDPEKRAIYD 63
terminal_TopJ NF037946
terminal organelle assembly protein TopJ;
321-413 3.39e-20

terminal organelle assembly protein TopJ;


Pssm-ID: 468284 [Multi-domain]  Cd Length: 440  Bit Score: 92.19  E-value: 3.39e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 321 SKRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYDS-GQDlDE 399
Cdd:NF037946   2 EEKRDYYEVLGVDRDADDQEIKKAFRKLAKKYHPDRNKAPDAA------EIFAEINEAYEVLSNPEKRANYDKyGHD-GV 74
                         90
                 ....*....|....
gi 767995718 400 EGMNMGDFDPNNIF 413
Cdd:NF037946  75 DGEGGFGFDAFDVF 88
PRK14289 PRK14289
molecular chaperone DnaJ;
323-406 1.61e-19

molecular chaperone DnaJ;


Pssm-ID: 237660 [Multi-domain]  Cd Length: 386  Bit Score: 89.89  E-value: 1.61e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 323 RKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSG-ASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYDS-------- 393
Cdd:PRK14289   4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGdKEAE------EKFKEAAEAYDVLSDPDKRSRYDQfghagvgg 77
                         90
                 ....*....|....*.
gi 767995718 394 ---GQDLDEEGMNMGD 406
Cdd:PRK14289  78 aagGGGFSGEGMSMED 93
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
325-392 7.61e-19

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 82.44  E-value: 7.61e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767995718 325 DYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSG-ASAEVQkeeekkFKEVGEAFTILSDPKKKTRYD 392
Cdd:COG0484    1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPGdPEAEEK------FKEINEAYEVLSDPEKRAAYD 63
PRK14277 PRK14277
chaperone protein DnaJ; Provisional
323-407 1.22e-18

chaperone protein DnaJ; Provisional


Pssm-ID: 184599 [Multi-domain]  Cd Length: 386  Bit Score: 87.16  E-value: 1.22e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 323 RKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQkeeekKFKEVGEAFTILSDPKKKTRYDSGQD--LDEE 400
Cdd:PRK14277   4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQ-----KFKEINEAYEILSDPQKRAQYDQFGHaaFDPG 78

                 ....*..
gi 767995718 401 GMNMGDF 407
Cdd:PRK14277  79 GFGQGGF 85
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
3-227 1.56e-18

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 84.67  E-value: 1.56e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718   3 PKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAqqefkn 82
Cdd:COG0457    5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEA------ 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718  83 anavmeYEKIAETDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYVRGL 162
Cdd:COG0457   79 ------LNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGI 152
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767995718 163 CLYYEDCIEKAVQFFVQAL-RMAPDHEKACIACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEAL 227
Cdd:COG0457  153 ALEKLGRYEEALELLEKLEaAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAA 218
PRK14297 PRK14297
molecular chaperone DnaJ;
324-392 2.07e-17

molecular chaperone DnaJ;


Pssm-ID: 184611 [Multi-domain]  Cd Length: 380  Bit Score: 83.29  E-value: 2.07e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 324 KDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSG-ASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYD 392
Cdd:PRK14297   4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGnKEAE------EKFKEINEAYQVLSDPQKKAQYD 67
PRK14290 PRK14290
chaperone protein DnaJ; Provisional
324-413 2.27e-17

chaperone protein DnaJ; Provisional


Pssm-ID: 172778 [Multi-domain]  Cd Length: 365  Bit Score: 83.06  E-value: 2.27e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 324 KDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQkeeeKKFKEVGEAFTILSDPKKKTRYDSGQDLD----E 399
Cdd:PRK14290   3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAE----EKFKEISEAYEVLSDPQKRRQYDQTGTVDfgagG 78
                         90
                 ....*....|....*...
gi 767995718 400 EGMNMGDF----DPNNIF 413
Cdd:PRK14290  79 SNFNWDNFthfsDINDIF 96
PRK14298 PRK14298
chaperone protein DnaJ; Provisional
321-392 2.35e-17

chaperone protein DnaJ; Provisional


Pssm-ID: 184612 [Multi-domain]  Cd Length: 377  Bit Score: 83.36  E-value: 2.35e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767995718 321 SKRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYD 392
Cdd:PRK14298   2 ATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAE------EKFKEISEAYAVLSDAEKRAQYD 67
PRK14295 PRK14295
molecular chaperone DnaJ;
324-438 3.21e-17

molecular chaperone DnaJ;


Pssm-ID: 237665 [Multi-domain]  Cd Length: 389  Bit Score: 82.97  E-value: 3.21e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 324 KDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSG-ASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYDSGQDLdeegM 402
Cdd:PRK14295   9 KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGdAKAE------ERFKEISEAYDVLSDEKKRKEYDEARSL----F 78
                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 767995718 403 NMGDFDPNnifkaffggpggfsFEASGPGNFFFQFG 438
Cdd:PRK14295  79 GNGGFRPG--------------PGGGGGGGFNFDLG 100
PRK14292 PRK14292
chaperone protein DnaJ; Provisional
325-413 3.56e-17

chaperone protein DnaJ; Provisional


Pssm-ID: 237662 [Multi-domain]  Cd Length: 371  Bit Score: 82.63  E-value: 3.56e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 325 DYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQkeeekkFKEVGEAFTILSDPKKKTRYDSGQDLDEEGMNM 404
Cdd:PRK14292   3 DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEK------FAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPG 76
                         90
                 ....*....|....*
gi 767995718 405 GD------FDPNNIF 413
Cdd:PRK14292  77 GDpfggmgFDPMDIF 91
PRK14299 PRK14299
chaperone protein DnaJ; Provisional
324-393 9.06e-17

chaperone protein DnaJ; Provisional


Pssm-ID: 237667 [Multi-domain]  Cd Length: 291  Bit Score: 80.37  E-value: 9.06e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 324 KDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYDS 393
Cdd:PRK14299   4 KDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAE------EKFKEINEAYTVLSDPEKRRIYDT 67
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
39-330 1.04e-16

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 79.77  E-value: 1.04e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718  39 FVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAqqefknanavmeYEKIAETDFEKRDFRKVVFCMDRALEFAPA 118
Cdd:COG2956    7 AALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEA------------HLALGNLYRRRGEYDRAIRIHQKLLERDPD 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 119 CHRFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACIacrnak 198
Cdd:COG2956   75 RAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYC------ 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 199 alkakkEDGNKAFKEGNYKLAYELYTEALGIDPNNiktnAKLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTYIKAYLRR 278
Cdd:COG2956  149 ------ELAELYLEQGDYDEAIEALEKALKLDPDC----ARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRL 218
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 767995718 279 AQCYMDTEQYEEAVRDYEKVYqtEKTKEHKQLLKNAQLELKKSKRKDYYKIL 330
Cdd:COG2956  219 AELYEKLGDPEEALELLRKAL--ELDPSDDLLLALADLLERKEGLEAALALL 268
DnaJ smart00271
DnaJ molecular chaperone homology domain;
324-387 1.42e-16

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 73.42  E-value: 1.42e-16
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767995718   324 KDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQkeeeKKFKEVGEAFTILSDPKK 387
Cdd:smart00271   1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAE----EKFKEINEAYEVLSDPEK 60
PRK14279 PRK14279
molecular chaperone DnaJ;
324-392 2.79e-16

molecular chaperone DnaJ;


Pssm-ID: 237655 [Multi-domain]  Cd Length: 392  Bit Score: 80.16  E-value: 2.79e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 324 KDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSG-ASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYD 392
Cdd:PRK14279   9 KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGdPAAE------ERFKAVSEAHDVLSDPAKRKEYD 72
PRK14280 PRK14280
molecular chaperone DnaJ;
321-407 5.11e-16

molecular chaperone DnaJ;


Pssm-ID: 237656 [Multi-domain]  Cd Length: 376  Bit Score: 79.38  E-value: 5.11e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 321 SKRkDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYD------SG 394
Cdd:PRK14280   2 AKR-DYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGAD------EKFKEISEAYEVLSDDQKRAQYDqfghagPN 74
                         90
                 ....*....|...
gi 767995718 395 QDLDEEGMNMGDF 407
Cdd:PRK14280  75 QGFGGGGFGGGDF 87
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
12-297 5.59e-16

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 77.85  E-value: 5.59e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718  12 RAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAQQEfknanavmeyek 91
Cdd:COG2956   14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLE------------ 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718  92 IAETDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYEDCIE 171
Cdd:COG2956   82 LAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYD 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 172 KAVQFFVQALRMAPDHEKACIACrnakalkakkedGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLycnrGTVNSKL 251
Cdd:COG2956  162 EAIEALEKALKLDPDCARALLLL------------AELYLEQGDYEEAIAALERALEQDPDYLPALPRL----AELYEKL 225
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 767995718 252 RKLDDAIEDCTNAVKLDDTyIKAYLRRAQCYMDTEQYEEAVRDYEK 297
Cdd:COG2956  226 GDPEEALELLRKALELDPS-DDLLLALADLLERKEGLEAALALLER 270
PRK14291 PRK14291
chaperone protein DnaJ; Provisional
323-412 5.70e-16

chaperone protein DnaJ; Provisional


Pssm-ID: 237661 [Multi-domain]  Cd Length: 382  Bit Score: 79.04  E-value: 5.70e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 323 RKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYD-------SGQ 395
Cdd:PRK14291   2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAE------EKFKEINEAYQVLSDPEKRKLYDqfghaafSGS 75
                         90
                 ....*....|....*...
gi 767995718 396 DLDEEGMN-MGDFDPNNI 412
Cdd:PRK14291  76 GQQQQGQEgFSDFGGGNI 93
PRK14276 PRK14276
chaperone protein DnaJ; Provisional
324-392 5.94e-16

chaperone protein DnaJ; Provisional


Pssm-ID: 237653 [Multi-domain]  Cd Length: 380  Bit Score: 78.98  E-value: 5.94e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767995718 324 KDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYD 392
Cdd:PRK14276   4 TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAE------EKYKEVQEAYETLSDPQKRAAYD 66
PRK14294 PRK14294
chaperone protein DnaJ; Provisional
321-392 6.59e-16

chaperone protein DnaJ; Provisional


Pssm-ID: 237664 [Multi-domain]  Cd Length: 366  Bit Score: 78.65  E-value: 6.59e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767995718 321 SKRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSG-ASAEVQkeeekkFKEVGEAFTILSDPKKKTRYD 392
Cdd:PRK14294   1 MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGdKEAEEL------FKEAAEAYEVLSDPKKRGIYD 67
PRK14287 PRK14287
chaperone protein DnaJ; Provisional
323-408 7.00e-16

chaperone protein DnaJ; Provisional


Pssm-ID: 237659 [Multi-domain]  Cd Length: 371  Bit Score: 78.90  E-value: 7.00e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 323 RKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQkeeekkFKEVGEAFTILSDPKKKTRYDSGQDLDEE-- 400
Cdd:PRK14287   3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDK------FKEVKEAYDTLSDPQKKAHYDQFGHTDPNqg 76
                         90
                 ....*....|
gi 767995718 401 --GMNMGDFD 408
Cdd:PRK14287  77 fgGGGAGDFG 86
PRK14301 PRK14301
chaperone protein DnaJ; Provisional
323-392 1.16e-15

chaperone protein DnaJ; Provisional


Pssm-ID: 237668 [Multi-domain]  Cd Length: 373  Bit Score: 78.25  E-value: 1.16e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767995718 323 RKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSG-ASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYD 392
Cdd:PRK14301   3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDnPEAE------QKFKEAAEAYEVLRDAEKRARYD 67
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
195-300 1.41e-15

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 75.72  E-value: 1.41e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 195 RNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNiktnAKLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTYIKA 274
Cdd:COG4785   68 ALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDL----AEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYA 143
                         90       100
                 ....*....|....*....|....*.
gi 767995718 275 YLRRAQCYMDTEQYEEAVRDYEKVYQ 300
Cdd:COG4785  144 YLNRGIALYYLGRYELAIADLEKALE 169
termin_org_DnaJ TIGR03835
terminal organelle assembly protein TopJ; This model describes TopJ (MG_200, CbpA), a DnaJ ...
323-415 1.95e-15

terminal organelle assembly protein TopJ; This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274808 [Multi-domain]  Cd Length: 871  Bit Score: 78.70  E-value: 1.95e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718  323 RKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYDS-GQD-LDEE 400
Cdd:TIGR03835   1 KRDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAA------SIFAEINEANDVLSNPKKRANYDKyGHDgVDRE 74
                          90
                  ....*....|....*
gi 767995718  401 GMNmgDFDPnNIFKA 415
Cdd:TIGR03835  75 DDF--DFQA-DVFNS 86
PRK14283 PRK14283
chaperone protein DnaJ; Provisional
323-392 1.96e-15

chaperone protein DnaJ; Provisional


Pssm-ID: 184604 [Multi-domain]  Cd Length: 378  Bit Score: 77.56  E-value: 1.96e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 323 RKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYD 392
Cdd:PRK14283   4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAE------EKFKEISEAYAVLSDDEKRQRYD 67
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
130-306 2.18e-15

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 78.50  E-value: 2.18e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 130 LAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACIACrnakalkakkedGNK 209
Cdd:COG3914   88 LQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNL------------GEA 155
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 210 AFKEGNYKLAYELYTEALGIDPNniktNAKLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTYIKAYLRRAQCYMDTEQYE 289
Cdd:COG3914  156 LRRLGRLEEAIAALRRALELDPD----NAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWE 231
                        170
                 ....*....|....*..
gi 767995718 290 EAVRDYEKVYQTEKTKE 306
Cdd:COG3914  232 VYDRFEELLAALARGPS 248
PRK14282 PRK14282
chaperone protein DnaJ; Provisional
323-392 4.11e-15

chaperone protein DnaJ; Provisional


Pssm-ID: 184603 [Multi-domain]  Cd Length: 369  Bit Score: 76.37  E-value: 4.11e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 323 RKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQkeeeKKFKEVGEAFTILSDPKKKTRYD 392
Cdd:PRK14282   3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAE----QKFKEIQEAYEVLSDPQKRAMYD 68
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
325-384 4.84e-15

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 69.11  E-value: 4.84e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 325 DYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQkeeekKFKEVGEAFTILSD 384
Cdd:cd06257    1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEE-----KFKEINEAYEVLSD 55
PRK14284 PRK14284
chaperone protein DnaJ; Provisional
325-392 5.89e-15

chaperone protein DnaJ; Provisional


Pssm-ID: 237658 [Multi-domain]  Cd Length: 391  Bit Score: 76.03  E-value: 5.89e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767995718 325 DYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSG-ASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYD 392
Cdd:PRK14284   2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGdAEAE------KRFKEVSEAYEVLSDAQKRESYD 64
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
67-330 2.57e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 72.35  E-value: 2.57e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718  67 LELDHKNAQAqqefknanavmeYEKIAETDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDI 146
Cdd:COG0457    1 LELDPDDAEA------------YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQA 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 147 LRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDhekaciacrNAKALKAKkedGNKAFKEGNYKLAYELYTEA 226
Cdd:COG0457   69 LELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPD---------DAEALYNL---GLALLELGRYDEAIEAYERA 136
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 227 LGIDPNNiktnAKLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEKVYQTEKTKE 306
Cdd:COG0457  137 LELDPDD----ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLA 212
                        250       260
                 ....*....|....*....|....
gi 767995718 307 HKQLLKNAQLELKKSKRKDYYKIL 330
Cdd:COG0457  213 ILTLAALAELLLLALALLLALRLA 236
PRK14281 PRK14281
chaperone protein DnaJ; Provisional
323-415 3.17e-14

chaperone protein DnaJ; Provisional


Pssm-ID: 237657 [Multi-domain]  Cd Length: 397  Bit Score: 74.07  E-value: 3.17e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 323 RKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGAS-AEvqkeeeKKFKEVGEAFTILSDPKKKTRYD--------- 392
Cdd:PRK14281   2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKeAE------EHFKEVNEAYEVLSNDDKRRRYDqfghagvgs 75
                         90       100
                 ....*....|....*....|...
gi 767995718 393 SGQDLDEEGMNMGDFDPNNIFKA 415
Cdd:PRK14281  76 SAASGGGPGYGGGGGDFNDIFSA 98
PRK14293 PRK14293
molecular chaperone DnaJ;
325-407 3.74e-14

molecular chaperone DnaJ;


Pssm-ID: 237663 [Multi-domain]  Cd Length: 374  Bit Score: 73.49  E-value: 3.74e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 325 DYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYD-------SG--- 394
Cdd:PRK14293   4 DYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAE------DRFKEINRAYEVLSDPETRARYDqfgeagvSGaag 77
                         90
                 ....*....|....
gi 767995718 395 -QDLDeegmNMGDF 407
Cdd:PRK14293  78 fPDMG----DMGGF 87
SEC63 COG5407
Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular ...
325-390 4.30e-14

Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 444165 [Multi-domain]  Cd Length: 61  Bit Score: 66.56  E-value: 4.30e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767995718 325 DYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSG-ASAEvqkeeeKKFKEVGEAFTILSDPKKKTR 390
Cdd:COG5407    1 DPYEVLGVAKTASADEIKKAYRKLAKKYHPDRNKGdPKAE------ERFKEINEAYELLSDAEKRAR 61
PTZ00037 PTZ00037
DnaJ_C chaperone protein; Provisional
324-413 4.68e-14

DnaJ_C chaperone protein; Provisional


Pssm-ID: 240236 [Multi-domain]  Cd Length: 421  Bit Score: 73.70  E-value: 4.68e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 324 KDYYKILGVDKNASEDEIKKAYRKRALMHHPDRhsGASAEvqkeeekKFKEVGEAFTILSDPKKKTRYDsgqDLDEEGM- 402
Cdd:PTZ00037  28 EKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDK--GGDPE-------KFKEISRAYEVLSDPEKRKIYD---EYGEEGLe 95
                         90
                 ....*....|..
gi 767995718 403 -NMGDFDPNNIF 413
Cdd:PTZ00037  96 gGEQPADASDLF 107
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
197-297 6.91e-14

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 72.51  E-value: 6.91e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 197 AKALKAKkedGNKAFKEGNYKLAYELYTEALGIDPNNiktnAKLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTYIKAYL 276
Cdd:PLN03088   2 AKDLEDK---AKEAFVDDDFALAVDLYTQAIDLDPNN----AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYL 74
                         90       100
                 ....*....|....*....|.
gi 767995718 277 RRAQCYMDTEQYEEAVRDYEK 297
Cdd:PLN03088  75 RKGTACMKLEEYQTAKAALEK 95
CbpA COG2214
Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];
321-392 7.24e-14

Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];


Pssm-ID: 441816 [Multi-domain]  Cd Length: 91  Bit Score: 67.05  E-value: 7.24e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767995718 321 SKRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHsgasAEVQKEEEKKFKEVGEAFTILSDPKKKTRYD 392
Cdd:COG2214    2 PDLKDHYAVLGVPPDASLEEIRQAYRRLAKLLHPDRG----GELKALAEELFQRLNEAYEVLSDPERRAEYD 69
PRK14278 PRK14278
chaperone protein DnaJ; Provisional
324-401 8.86e-14

chaperone protein DnaJ; Provisional


Pssm-ID: 237654 [Multi-domain]  Cd Length: 378  Bit Score: 72.39  E-value: 8.86e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767995718 324 KDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYDSGQDLDEEG 401
Cdd:PRK14278   3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQ------EKFKEISVAYEVLSDPEKRRIVDLGGDPLESA 74
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
11-191 9.36e-14

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 73.10  E-value: 9.36e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718  11 NRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREgkcHLSLGNAMAACRSFQRALELDHKNAQAQQEFKNANAVMEYE 90
Cdd:COG3914   52 AEAAAAALLALAAGEAAAAAAALLLLAALLELAALL---LQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRL 128
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718  91 KIAETdfekrdfrkvvfCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYEDCI 170
Cdd:COG3914  129 EEALA------------ALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRL 196
                        170       180
                 ....*....|....*....|.
gi 767995718 171 EKAVQFFVQALRMAPDHEKAC 191
Cdd:COG3914  197 EEAIAAYRRALELDPDNADAH 217
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
153-300 1.74e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 72.33  E-value: 1.74e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 153 NADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACIACRNAKALKAKKED-----GNKAFKEGNYKLAYELYTEAL 227
Cdd:COG3914   60 LALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEalfnlGNLLLALGRLEEALAALRRAL 139
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767995718 228 GIDPNNiktnAKLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEKVYQ 300
Cdd:COG3914  140 ALNPDF----AEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALE 208
PRK14286 PRK14286
chaperone protein DnaJ; Provisional
324-405 6.79e-13

chaperone protein DnaJ; Provisional


Pssm-ID: 172774 [Multi-domain]  Cd Length: 372  Bit Score: 69.63  E-value: 6.79e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 324 KDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGasaevQKEEEKKFKEVGEAFTILSDPKKKTRYDSgqdLDEEGMN 403
Cdd:PRK14286   4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKG-----NKESEEKFKEATEAYEILRDPKKRQAYDQ---FGKAGVN 75

                 ..
gi 767995718 404 MG 405
Cdd:PRK14286  76 AG 77
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
33-227 8.04e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 68.11  E-value: 8.04e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718  33 VRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAqqefknanavmeYEKIAETDFEKRDFRKVVFCMDRA 112
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEA------------LYNLGLAYLRLGRYEEALADYEQA 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 113 LEFAPACHRFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACI 192
Cdd:COG0457   69 LELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALY 148
                        170       180       190
                 ....*....|....*....|....*....|....*
gi 767995718 193 ACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEAL 227
Cdd:COG0457  149 NLGIALEKLGRYEEALELLEKLEAAALAALLAAAL 183
PRK14285 PRK14285
chaperone protein DnaJ; Provisional
323-392 2.24e-12

chaperone protein DnaJ; Provisional


Pssm-ID: 172773 [Multi-domain]  Cd Length: 365  Bit Score: 68.09  E-value: 2.24e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 323 RKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGasaevQKEEEKKFKEVGEAFTILSDPKKKTRYD 392
Cdd:PRK14285   2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKG-----NKEAESIFKEATEAYEVLIDDNKRAQYD 66
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
179-300 6.81e-12

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 67.33  E-value: 6.81e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 179 QALRMAPDHEKACIACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNniktNAKLYCNRGTVNSKLRKLDDAI 258
Cdd:COG3914   57 AALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPD----NAEALFNLGNLLLALGRLEEAL 132
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 767995718 259 EDCTNAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEKVYQ 300
Cdd:COG3914  133 AALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALE 174
DjlA COG1076
DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];
325-386 2.64e-11

DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440694 [Multi-domain]  Cd Length: 75  Bit Score: 59.04  E-value: 2.64e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767995718 325 DYYKILGVDKNASEDEIKKAYRKRALMHHPDRH-SGASAEVQKEEEKKFKEVGEAFTILSDPK 386
Cdd:COG1076    5 DAFELLGLPPDADDAELKRAYRKLQREHHPDRLaAGLPEEEQRLALQKAAAINEAYETLKDPR 67
PRK14296 PRK14296
chaperone protein DnaJ; Provisional
322-392 4.60e-11

chaperone protein DnaJ; Provisional


Pssm-ID: 237666 [Multi-domain]  Cd Length: 372  Bit Score: 64.20  E-value: 4.60e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767995718 322 KRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYD 392
Cdd:PRK14296   2 KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAH------DKMVEINEAADVLLDKDKRKQYD 66
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
12-182 4.76e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 64.63  E-value: 4.76e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718  12 RAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAQQefknanavmeyeK 91
Cdd:COG3914   84 AALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYL------------N 151
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718  92 IAETDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYvRGLCLYYEDCIE 171
Cdd:COG3914  152 LGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHS-NLLFALRQACDW 230
                        170
                 ....*....|.
gi 767995718 172 KAVQFFVQALR 182
Cdd:COG3914  231 EVYDRFEELLA 241
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
3-188 7.42e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 62.44  E-value: 7.42e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718   3 PKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAQQ---- 78
Cdd:COG2956   39 PETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRllae 118
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718  79 ------EFKNANAVME------------YEKIAETDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQ 140
Cdd:COG2956  119 iyeqegDWEKAIEVLErllklgpenahaYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAI 198
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 767995718 141 SVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHE 188
Cdd:COG2956  199 AALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDD 246
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
195-295 1.11e-10

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 63.46  E-value: 1.11e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718  195 RNAKALKAKkEDGNKAFKEGNYKLAYELYTEALGIDPNNIktnakLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTYIKA 274
Cdd:TIGR00990 123 RKKYAAKLK-EKGNKAYRNKDFNKAIKLYSKAIECKPDPV-----YYSNRAACHNALGDWEKVVEDTTAALELDPDYSKA 196
                          90       100
                  ....*....|....*....|.
gi 767995718  275 YLRRAQCYMDTEQYEEAVRDY 295
Cdd:TIGR00990 197 LNRRANAYDGLGKYADALLDL 217
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
154-300 2.18e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 58.66  E-value: 2.18e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 154 ADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDhekaciacrNAKALKAKkedGNKAFKEGNYKLAYELYTEALGIDPNN 233
Cdd:COG4783    4 AEALYALAQALLLAGDYDEAEALLEKALELDPD---------NPEAFALL---GEILLQLGDLDEAIVLLHEALELDPDE 71
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767995718 234 iktnAKLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEKVYQ 300
Cdd:COG4783   72 ----PEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALE 134
PRK14300 PRK14300
chaperone protein DnaJ; Provisional
324-413 1.20e-09

chaperone protein DnaJ; Provisional


Pssm-ID: 172788 [Multi-domain]  Cd Length: 372  Bit Score: 59.64  E-value: 1.20e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 324 KDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYDS-GQDLDEE-- 400
Cdd:PRK14300   3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAE------KKFKEINAAYDVLKDEQKRAAYDRfGHDAFQNqq 76
                         90
                 ....*....|....*....
gi 767995718 401 ----GMNMGDFDP--NNIF 413
Cdd:PRK14300  77 srggGGNHGGFHPdiNDIF 95
PRK10266 PRK10266
curved DNA-binding protein;
324-392 3.15e-09

curved DNA-binding protein;


Pssm-ID: 182347 [Multi-domain]  Cd Length: 306  Bit Score: 57.91  E-value: 3.15e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767995718 324 KDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQkeeekkFKEVGEAFTILSDPKKKTRYD 392
Cdd:PRK10266   4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEAR------FKEVAEAWEVLSDEQRRAEYD 66
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
83-233 3.48e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 55.20  E-value: 3.48e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718  83 ANAVMEYEKIAETDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYVRGL 162
Cdd:COG4783    1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767995718 163 CLYYEDCIEKAVQFFVQALRMAPDHEKAciACRNAKALKAKkedgnkafkeGNYKLAYELYTEALGIDPNN 233
Cdd:COG4783   81 ALLKAGDYDEALALLEKALKLDPEHPEA--YLRLARAYRAL----------GRPDEAIAALEKALELDPDD 139
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
3-153 3.60e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 58.85  E-value: 3.60e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718   3 PKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAQQEfkn 82
Cdd:COG3914  109 PDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNN--- 185
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767995718  83 anavmeyekIAETDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDILRMDSTN 153
Cdd:COG3914  186 ---------LGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGP 247
PRK14288 PRK14288
molecular chaperone DnaJ;
326-407 1.12e-08

molecular chaperone DnaJ;


Pssm-ID: 172776 [Multi-domain]  Cd Length: 369  Bit Score: 56.62  E-value: 1.12e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 326 YYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGasaevQKEEEKKFKEVGEAFTILSDPKKKTRYD--SGQDLDEEGMN 403
Cdd:PRK14288   5 YYEILEVEKHSNQETIKKSYRKLALKYHPDRNAG-----DKEAEEKFKLINEAYGVLSDEKKRALYDryGKKGLNQAGAS 79

                 ....
gi 767995718 404 MGDF 407
Cdd:PRK14288  80 QSDF 83
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
210-300 1.73e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 51.71  E-value: 1.73e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 210 AFKEGNYKLAYELYTEALGIDPNNiktnAKLYCNRGTVNSKLRKLDDAIEdCTNAVKLDDTYIKAYLRRAQCYMDTEQYE 289
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPDN----ADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYD 76
                         90
                 ....*....|.
gi 767995718 290 EAVRDYEKVYQ 300
Cdd:COG3063   77 EALAYLERALE 87
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
58-190 1.93e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 52.70  E-value: 1.93e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718  58 AACRSFQRALELDHKNAQAqqefknanavmeYEKIAETDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYP 137
Cdd:COG4235    1 EAIARLRQALAANPNDAEG------------WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTE 68
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 767995718 138 EAQSVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKA 190
Cdd:COG4235   69 EAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPA 121
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
207-355 2.17e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 55.12  E-value: 2.17e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 207 GNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLycnrGTVNSKLRKLDDAIEDCTNAVKLDDTYIKAYLRRAQCYMDTE 286
Cdd:COG2956   15 GLNYLLNGQPDKAIDLLEEALELDPETVEAHLAL----GNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 287 QYEEAVRDYEKVYQT---------------EKTKEHKQLLKNA-QLELKKSKRKDYYKILGV--DKNASEDEIKKAYRKr 348
Cdd:COG2956   91 LLDRAEELLEKLLELdpddaealrllaeiyEQEGDWEKAIEVLeRLLKLGPENAHAYCELAElyLEQGDYDEAIEALEK- 169

                 ....*..
gi 767995718 349 ALMHHPD 355
Cdd:COG2956  170 ALKLDPD 176
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
197-298 2.79e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 52.50  E-value: 2.79e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 197 AKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNiktnAKLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTYIKAYL 276
Cdd:COG4783    1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDN----PEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARL 76
                         90       100
                 ....*....|....*....|..
gi 767995718 277 RRAQCYMDTEQYEEAVRDYEKV 298
Cdd:COG4783   77 NLGLALLKAGDYDEALALLEKA 98
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
207-298 5.71e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 51.16  E-value: 5.71e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 207 GNKAFKEGNYKLAYELYTEALGIDPNNiktnAKLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTYIKAYLRRAQCYMDTE 286
Cdd:COG4235   24 GRAYLRLGRYDEALAAYEKALRLDPDN----ADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQG 99
                         90
                 ....*....|..
gi 767995718 287 QYEEAVRDYEKV 298
Cdd:COG4235  100 DYAEAIAAWQKL 111
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
3-302 5.98e-08

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 55.09  E-value: 5.98e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718    3 PKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAqqEFKN 82
Cdd:TIGR02917 156 PRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAV--LLAL 233
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718   83 ANAVMEYEKIAETDFEkrdfrkvvfcMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYVRGL 162
Cdd:TIGR02917 234 ATILIEAGEFEEAEKH----------ADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGA 303
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718  163 CLYYEDCIEKAVQFFVQALRMAPDHekaciacRNAKALKAKKEdgnkaFKEGNYKLAYELYTEALGIDPNniktNAKLYC 242
Cdd:TIGR02917 304 SEYQLGNLEQAYQYLNQILKYAPNS-------HQARRLLASIQ-----LRLGRVDEAIATLSPALGLDPD----DPAALS 367
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718  243 NRGTVNSKLRKLDDAIEDCTNAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEKVYQTE 302
Cdd:TIGR02917 368 LLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLD 427
djlA PRK09430
co-chaperone DjlA;
324-355 1.26e-07

co-chaperone DjlA;


Pssm-ID: 236512 [Multi-domain]  Cd Length: 267  Bit Score: 52.51  E-value: 1.26e-07
                         10        20        30
                 ....*....|....*....|....*....|....
gi 767995718 324 KDYYKILGVDKNASEDEIKKAYRKraLM--HHPD 355
Cdd:PRK09430 200 EDAYKVLGVSESDDDQEIKRAYRK--LMseHHPD 231
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
153-303 1.31e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 51.11  E-value: 1.31e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 153 NADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACIACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPN 232
Cdd:COG5010    7 FDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN 86
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767995718 233 NiktnAKLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEKVYQTEK 303
Cdd:COG5010   87 N----PELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
104-233 2.32e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 49.62  E-value: 2.32e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 104 KVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRM 183
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 767995718 184 APDHekaciacrnakaLKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNN 233
Cdd:COG4235   81 DPDN------------PEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1-76 7.27e-07

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 49.91  E-value: 7.27e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767995718   1 MCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQA 76
Cdd:COG4785  102 LDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPER 177
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
6-153 1.27e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 47.49  E-value: 1.27e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718   6 ASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAqqefknana 85
Cdd:COG4783    4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEA--------- 74
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767995718  86 vmeYEKIAETDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDILRMDSTN 153
Cdd:COG4783   75 ---RLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
47-323 1.55e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 50.47  E-value: 1.55e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718   47 GKCHLSLGNAMAACRSFQRALELDHKNAQA----------QQEFKNANAVME-------------YEKIAETDFEKRDFR 103
Cdd:TIGR02917  63 GKIYLALGDYAAAEKELRKALSLGYPKNQVlpllarayllQGKFQQVLDELPgktllddegaaelLALRGLAYLGLGQLE 142
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718  104 KVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRM 183
Cdd:TIGR02917 143 LAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIAL 222
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718  184 APDHEKACIAcrnakalkakkeDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKlycnRGTVNSKLRKLDDAIEDCTN 263
Cdd:TIGR02917 223 RPNNIAVLLA------------LATILIEAGEFEEAEKHADALLKKAPNSPLAHYL----KALVDFQKKNYEDARETLQD 286
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767995718  264 AVKLDDTYIKA-YLRRAQCYM--DTEQYEEAVRDYEKvyQTEKTKEHKQLLKNAQLELKKSKR 323
Cdd:TIGR02917 287 ALKSAPEYLPAlLLAGASEYQlgNLEQAYQYLNQILK--YAPNSHQARRLLASIQLRLGRVDE 347
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
3-150 3.26e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 48.57  E-value: 3.26e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718   3 PKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAqqefkn 82
Cdd:COG2956  141 PENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPA------ 214
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767995718  83 anavmeYEKIAETDFEKRDFRKVVFCMDRALEFAPAcHRFKILKAECLAMLGRYPEAQSVASDILRMD 150
Cdd:COG2956  215 ------LPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALADLLERKEGLEAALALLERQLRRH 275
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
2-76 7.55e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 46.83  E-value: 7.55e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767995718   2 CPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQA 76
Cdd:COG4785   69 LPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYA 143
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
3-352 1.26e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 47.77  E-value: 1.26e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718    3 PKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNamaacrsFQRALEldhknAQAQQEFKN 82
Cdd:TIGR02917 394 PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQ-------FDKALA-----AAKKLEKKQ 461
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718   83 ANAVMEYEKIAETDFEKRDFRKVVFCMDRALEFAPAcHRFKILKaecLAML----GRYPEAQSVASDILRMDSTNADALy 158
Cdd:TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAAN---LARIdiqeGNPDDAIQRFEKVLTIDPKNLRAI- 536
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718  159 vRGLCLYYEDC--IEKAVQFFVQALRmapdhekaciacRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALgidpNNIKT 236
Cdd:TIGR02917 537 -LALAGLYLRTgnEEEAVAWLEKAAE------------LNPQEIEPALALAQYYLGKGQLKKALAILNEAA----DAAPD 599
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718  237 NAKLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEKVYQTEKTKEHKQLLKnAQL 316
Cdd:TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGL-AQL 678
                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 767995718  317 ELKKSKRKDYYKILgvdknaseDEIKKAYRKRALMH 352
Cdd:TIGR02917 679 LLAAKRTESAKKIA--------KSLQKQHPKAALGF 706
ZUO1 COG5269
Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / ...
317-393 1.30e-05

Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227594 [Multi-domain]  Cd Length: 379  Bit Score: 46.95  E-value: 1.30e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 317 ELKKSKRKDYYKILGVDK---NASEDEIKKAYRKRALMHHPDRhsgASAEVQKEEEKKFKEVGEAFTILSDPKKKTRYDS 393
Cdd:COG5269   36 DFKNWKKVDLYALLGLSKyrtKAIPPQILKAHKKKVYKYHPDK---TAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDS 112
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
3-118 1.33e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 44.61  E-value: 1.33e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718   3 PKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAqqefkn 82
Cdd:COG4235   14 PNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEA------ 87
                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 767995718  83 anavmeYEKIAETDFEKRDFRKVVFCMDRALEFAPA 118
Cdd:COG4235   88 ------LYLLGLAAFQQGDYAEAIAAWQKLLALLPA 117
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
3-99 1.55e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 44.41  E-value: 1.55e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718   3 PKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAQQEFKN 82
Cdd:COG4783   35 PDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLAR 114
                         90
                 ....*....|....*..
gi 767995718  83 ANAVMEYEKIAETDFEK 99
Cdd:COG4783  115 AYRALGRPDEAIAALEK 131
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
134-234 3.52e-05

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 46.23  E-value: 3.52e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718  134 GRYPEAQSVASDILRMDSTNADAlyVRGLC-LYYEDCIEKAVQFfVQALrmaPDHEKACIA-CRNAKALKAKKEDGNKAF 211
Cdd:PRK11447  399 KDYAAAERYYQQALRMDPGNTNA--VRGLAnLYRQQSPEKALAF-IASL---SASQRRSIDdIERSLQNDRLAQQAEALE 472
                          90       100
                  ....*....|....*....|...
gi 767995718  212 KEGNYKLAYELYTEALGIDPNNI 234
Cdd:PRK11447  473 NQGKWAQAAELQRQRLALDPGSV 495
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
3-70 4.16e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.08  E-value: 4.16e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767995718   3 PKNASYYGNRAATLMMLGRFREALgDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELD 70
Cdd:COG3063   23 PDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELD 89
PTZ00341 PTZ00341
Ring-infected erythrocyte surface antigen; Provisional
248-392 4.20e-05

Ring-infected erythrocyte surface antigen; Provisional


Pssm-ID: 173534 [Multi-domain]  Cd Length: 1136  Bit Score: 45.93  E-value: 4.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718  248 NSKLRKLDDAIEDCTnavkLDDTYIKAYLRRAQcymdtEQYEEAVRDYEKVYQTEKTkehkqllknaqLELKKSKrkdYY 327
Cdd:PTZ00341  520 NEEQQTADEHVEEPT----IAEEHVEEEISTAE-----EHIEEPASDVQQDSEAAPT-----------IEIPDTL---FY 576
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767995718  328 KILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAevqkeeEKKFKEVGEAFTILSDPKKKTRYD 392
Cdd:PTZ00341  577 DILGVGVNADMKEISERYFKLAENYYPPKRSGNEG------FHKFKKINEAYQILGDIDKKKMYN 635
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
3-94 4.34e-05

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 45.55  E-value: 4.34e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718   3 PKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAAcrsfQRALELDHKNAQAQQEFKN 82
Cdd:PLN03088  33 PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA----KAALEKGASLAPGDSRFTK 108
                         90
                 ....*....|..
gi 767995718  83 ANAVMEyEKIAE 94
Cdd:PLN03088 109 LIKECD-EKIAE 119
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
3-73 7.53e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 42.49  E-value: 7.53e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767995718   3 PKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKN 73
Cdd:COG4783   69 PDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
219-298 9.02e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 41.92  E-value: 9.02e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 219 AYELYTEALGIDPNNiktnAKLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEKV 298
Cdd:COG4235    2 AIARLRQALAANPND----AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERA 77
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
16-121 9.54e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 41.31  E-value: 9.54e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718  16 LMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAAcRSFQRALELDHKNAQAqqefknanavmeYEKIAET 95
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEA------------LLNLAEL 68
                         90       100
                 ....*....|....*....|....*.
gi 767995718  96 DFEKRDFRKVVFCMDRALEFAPACHR 121
Cdd:COG3063   69 LLELGDYDEALAYLERALELDPSALR 94
BamD COG4105
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ...
56-320 1.06e-04

Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443281 [Multi-domain]  Cd Length: 254  Bit Score: 43.72  E-value: 1.06e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718  56 AMAACRSFQRALeldhKNAQAQQEFKNANAVME---YEKiAETDFEKrdfrkvvfcMDRALEFAPACHRFKILKAECLAM 132
Cdd:COG4105   16 LLAGCSSFKKAL----KSWDAEELYEEAKEALEkgdYEK-AIKLFEE---------LEPRYPGSPYAEQAQLMLAYAYYK 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 133 LGRYPEAQSVASDILRM--DSTNAD-ALYVRGLCLYYED--------CIEKAVQFFVQALRMAPDHEKAciacrnakalk 201
Cdd:COG4105   82 QGDYEEAIAAADRFIKLypNSPNADyAYYLRGLSYYEQSpdsdrdqtSTRKAIEAFQELINRYPDSEYA----------- 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 202 akkEDGNKAFKEGNYKLA-YELYtealgidpnniktNAKLYCNRGTVNSKLRKLDDAIEDC--TNAVKlddtyiKAYLRR 278
Cdd:COG4105  151 ---EDAKKRIDELRDKLArKELE-------------VARYYLKRGAYVAAINRFQNVLEDYpdTPAVE------EALYLL 208
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 767995718 279 AQCYMDTEQYEEAvRDYEKVYQ-----TEKTKEHKQLLKNAQLELKK 320
Cdd:COG4105  209 VEAYYALGRYDEA-QDAAAVLGknypdSPYLKDAEKLLKKIGKELKK 254
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
110-231 1.46e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 42.25  E-value: 1.46e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 110 DRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEK 189
Cdd:COG5010   44 AAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPN 123
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 767995718 190 ACIACRNAKAlkakkedgnkafKEGNYKLAYELYTEALGIDP 231
Cdd:COG5010  124 AYSNLAALLL------------SLGQDDEAKAALQRALGTSP 153
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
6-99 2.94e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.10  E-value: 2.94e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718   6 ASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAQQEFKNANA 85
Cdd:COG5010   54 FAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLL 133
                         90
                 ....*....|....
gi 767995718  86 VMEYEKIAETDFEK 99
Cdd:COG5010  134 SLGQDDEAKAALQR 147
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
129-232 4.77e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.00  E-value: 4.77e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 129 CLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFvQALRMAPDhekaciacrNAKALKAKkedGN 208
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALE-KALKLDPN---------NAEALLNL---AE 67
                         90       100
                 ....*....|....*....|....
gi 767995718 209 KAFKEGNYKLAYELYTEALGIDPN 232
Cdd:COG3063   68 LLLELGDYDEALAYLERALELDPS 91
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
209-301 5.70e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 39.20  E-value: 5.70e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 209 KAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYcNRGTVNSKLRKLDDAIEDCTNAVKL---DDTYIKAYLRRAQCYMDT 285
Cdd:COG1729    2 ALLKAGDYDEAIAAFKAFLKRYPNSPLAPDALY-WLGEAYYALGDYDEAAEAFEKLLKRypdSPKAPDALLKLGLSYLEL 80
                         90
                 ....*....|....*.
gi 767995718 286 EQYEEAVRDYEKVYQT 301
Cdd:COG1729   81 GDYDKARATLEELIKK 96
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
3-70 6.22e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 40.33  E-value: 6.22e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767995718   3 PKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELD 70
Cdd:COG5010   85 PNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
74-185 9.09e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 39.94  E-value: 9.09e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718  74 AQAQQEFKNANAVMEYEKIAETDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDILRMDSTN 153
Cdd:COG5010   42 LAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDN 121
                         90       100       110
                 ....*....|....*....|....*....|..
gi 767995718 154 ADALYVRGLCLYYEDCIEKAVQFFVQALRMAP 185
Cdd:COG5010  122 PNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
TPR_1 pfam00515
Tetratricopeptide repeat;
238-271 1.74e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.86  E-value: 1.74e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 767995718  238 AKLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTY 271
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
PRK12370 PRK12370
HilA/EilA family virulence transcriptional regulator;
48-176 2.10e-03

HilA/EilA family virulence transcriptional regulator;


Pssm-ID: 237080 [Multi-domain]  Cd Length: 553  Bit Score: 40.22  E-value: 2.10e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718  48 KCHLSLG--------NAM-AACRSFQRALELDHKNAQAQQEFKNANAVMEYEKIAETDFEKrdfrkvvfcmdrALEFAPA 118
Cdd:PRK12370 303 ECYLSMAqmgifdkqNAMiKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQ------------ANLLSPI 370
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 767995718 119 CHRFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQF 176
Cdd:PRK12370 371 SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRL 428
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
43-322 2.22e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.45  E-value: 2.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718   43 HLREGKCHLSLGNAMAACRSFQRALELDHKNAQAQQEfknanavmeyekIAETDFEKRDFRKVVFCMDRALEFAPACHRF 122
Cdd:TIGR02917  25 LIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFL------------LGKIYLALGDYAAAEKELRKALSLGYPKNQV 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718  123 KILKAECLAMLGRYPEAQSVASDILRMDSTNADALY-VRGLCLYYEDCIEKAVQFFVQALRMAPdhekaciacrnaKALK 201
Cdd:TIGR02917  93 LPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLaLRGLAYLGLGQLELAQKSYEQALAIDP------------RSLY 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718  202 AKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKtnAKLYcnRGTVNSKLRKLDDAIEDCTNAVKLDDTYIKAYLRRAQC 281
Cdd:TIGR02917 161 AKLGLAQLALAENRFDEARALIDEVLTADPGNVD--ALLL--KGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATI 236
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 767995718  282 YMDTEQYEEAVRDYEKVYQTEKTKEHKQLLKnAQLELKKSK 322
Cdd:TIGR02917 237 LIEAGEFEEAEKHADALLKKAPNSPLAHYLK-ALVDFQKKN 276
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
3-147 2.51e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 39.22  E-value: 2.51e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718   3 PKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNamaacrsFQRALELDHKNAQAQQEFKN 82
Cdd:COG0457  107 PDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGR-------YEEALELLEKLEAAALAALL 179
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767995718  83 ANAVMEYEKIAETDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDIL 147
Cdd:COG0457  180 AAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYR 244
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
3-150 3.35e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.02  E-value: 3.35e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718   3 PKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAqqefkn 82
Cdd:COG5010   17 LTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPEL------ 90
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767995718  83 anavmeYEKIAETDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDILRMD 150
Cdd:COG5010   91 ------YYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
50-250 4.39e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 38.36  E-value: 4.39e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718  50 HLSLGNAMAACRSFQRALE--LDHKNAQAQQEFKNANAVMEYEKIAETDFEKRDFRKVVFCMDRALEFApachrfkiLKA 127
Cdd:COG4785    9 LLALALAAAAASKAAILLAalLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYY--------ERG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718 128 ECLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKAciacRNAKALkakkedg 207
Cdd:COG4785   81 VAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYA----YLNRGI------- 149
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 767995718 208 nkAFKE-GNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSK 250
Cdd:COG4785  150 --ALYYlGRYELAIADLEKALELDPNDPERALWLYLAERKLDPE 191
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
3-205 5.40e-03

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 39.20  E-value: 5.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718    3 PKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALeldhknaqaqQEFKN 82
Cdd:TIGR00990 396 SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCK----------KNFPE 465
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767995718   83 ANAVMEYekIAETDFEKRDFRKVVFCMDRALEFA----PACHRFKILKAECLAML---GRYPEAQSVASDILRMDSTNAD 155
Cdd:TIGR00990 466 APDVYNY--YGELLLDQNKFDEAIEKFDTAIELEketkPMYMNVLPLINKALALFqwkQDFIEAENLCEKALIIDPECDI 543
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 767995718  156 ALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACIACRNAKALKAKKE 205
Cdd:TIGR00990 544 AVATMAQLLLQQGDVDEALKLFERAAELARTEGELVQAISYAEATRTQIQ 593
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
238-271 5.85e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 34.34  E-value: 5.85e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 767995718   238 AKLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTY 271
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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