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Conserved domains on  [gi|768021990|ref|XP_011528106|]
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PAX3- and PAX7-binding protein 1 isoform X3 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GCFC super family cl06744
GC-rich sequence DNA-binding factor-like protein; This entry describes a domain found in a ...
 595-641 4.14e-15

GC-rich sequence DNA-binding factor-like protein; This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologs, as well as in a number of other proteins including Tuftelin-interacting protein 11. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing. This domain is also found in Sip1, a septin interacting protein.


The actual alignment was detected with superfamily member pfam07842:

Pssm-ID: 400273  Cd Length: 275  Bit Score: 75.95  E-value: 4.14e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 768021990  595 IDCIKSQFEAWRSKYYTSYKDAYIGLCLPKLFNPLIRLQLLTWTPLE 641
Cdd:pfam07842   1 LDEIADIFERLQRKYPEEYKEAELSLLAPSLVHPLLRLELLEWDPLK 47
 
Name Accession Description Interval E-value
GCFC pfam07842
GC-rich sequence DNA-binding factor-like protein; This entry describes a domain found in a ...
 595-641 4.14e-15

GC-rich sequence DNA-binding factor-like protein; This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologs, as well as in a number of other proteins including Tuftelin-interacting protein 11. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing. This domain is also found in Sip1, a septin interacting protein.


Pssm-ID: 400273  Cd Length: 275  Bit Score: 75.95  E-value: 4.14e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 768021990  595 IDCIKSQFEAWRSKYYTSYKDAYIGLCLPKLFNPLIRLQLLTWTPLE 641
Cdd:pfam07842   1 LDEIADIFERLQRKYPEEYKEAELSLLAPSLVHPLLRLELLEWDPLK 47
 
Name Accession Description Interval E-value
GCFC pfam07842
GC-rich sequence DNA-binding factor-like protein; This entry describes a domain found in a ...
 595-641 4.14e-15

GC-rich sequence DNA-binding factor-like protein; This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologs, as well as in a number of other proteins including Tuftelin-interacting protein 11. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing. This domain is also found in Sip1, a septin interacting protein.


Pssm-ID: 400273  Cd Length: 275  Bit Score: 75.95  E-value: 4.14e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 768021990  595 IDCIKSQFEAWRSKYYTSYKDAYIGLCLPKLFNPLIRLQLLTWTPLE 641
Cdd:pfam07842   1 LDEIADIFERLQRKYPEEYKEAELSLLAPSLVHPLLRLELLEWDPLK 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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