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Conserved domains on  [gi|767904360|ref|XP_011539777|]
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uncharacterized protein C1orf141 isoform X6 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4545 super family cl20948
Domain of unknown function (DUF4545); This family of proteins is found in eukaryotes. Proteins ...
 1-138 2.35e-70

Domain of unknown function (DUF4545); This family of proteins is found in eukaryotes. Proteins in this family are typically between and 417 amino acids in length. The human member of this family is C1orf141.


The actual alignment was detected with superfamily member pfam15078:

Pssm-ID: 464489  Cd Length: 465  Bit Score: 218.23  E-value: 2.35e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904360    1 MAEKILEKLDVLDKQAEIILARRTKINRLQSEGRKTTMAIPLTFDFQLEFEEALATSASKAISKIKEDKSCSITKSKMHV 80
Cdd:pfam15078   1 MAEKILEKLDILDEQAKILLARRAKKNRLQSQGKKKTLVTPLTFDFQLEFEEAIAPSASKTVSKITKDKSCDIKKPKRYV 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 767904360   81 SFKCEPEPRKSNFEKSNLRPFFIQTNVKNKESESTEPVEEHLKSRSIRPYLYLKDTTE 138
Cdd:pfam15078  81 SFKNEPEPRKSDFEKSNLRPHFVPTNIKNEESKSIEPVEENLKSRSTRPFLYLKDTTE 138
 
Name Accession Description Interval E-value
DUF4545 pfam15078
Domain of unknown function (DUF4545); This family of proteins is found in eukaryotes. Proteins ...
 1-138 2.35e-70

Domain of unknown function (DUF4545); This family of proteins is found in eukaryotes. Proteins in this family are typically between and 417 amino acids in length. The human member of this family is C1orf141.


Pssm-ID: 464489  Cd Length: 465  Bit Score: 218.23  E-value: 2.35e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904360    1 MAEKILEKLDVLDKQAEIILARRTKINRLQSEGRKTTMAIPLTFDFQLEFEEALATSASKAISKIKEDKSCSITKSKMHV 80
Cdd:pfam15078   1 MAEKILEKLDILDEQAKILLARRAKKNRLQSQGKKKTLVTPLTFDFQLEFEEAIAPSASKTVSKITKDKSCDIKKPKRYV 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 767904360   81 SFKCEPEPRKSNFEKSNLRPFFIQTNVKNKESESTEPVEEHLKSRSIRPYLYLKDTTE 138
Cdd:pfam15078  81 SFKNEPEPRKSDFEKSNLRPHFVPTNIKNEESKSIEPVEENLKSRSTRPFLYLKDTTE 138
 
Name Accession Description Interval E-value
DUF4545 pfam15078
Domain of unknown function (DUF4545); This family of proteins is found in eukaryotes. Proteins ...
 1-138 2.35e-70

Domain of unknown function (DUF4545); This family of proteins is found in eukaryotes. Proteins in this family are typically between and 417 amino acids in length. The human member of this family is C1orf141.


Pssm-ID: 464489  Cd Length: 465  Bit Score: 218.23  E-value: 2.35e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904360    1 MAEKILEKLDVLDKQAEIILARRTKINRLQSEGRKTTMAIPLTFDFQLEFEEALATSASKAISKIKEDKSCSITKSKMHV 80
Cdd:pfam15078   1 MAEKILEKLDILDEQAKILLARRAKKNRLQSQGKKKTLVTPLTFDFQLEFEEAIAPSASKTVSKITKDKSCDIKKPKRYV 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 767904360   81 SFKCEPEPRKSNFEKSNLRPFFIQTNVKNKESESTEPVEEHLKSRSIRPYLYLKDTTE 138
Cdd:pfam15078  81 SFKNEPEPRKSDFEKSNLRPHFVPTNIKNEESKSIEPVEENLKSRSTRPFLYLKDTTE 138
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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