|
Name |
Accession |
Description |
Interval |
E-value |
| GOLGA2L5 |
pfam15070 |
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein ... |
417-972 |
0e+00 |
|
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein family remains unknown. This family of proteins is thought to be found in the Golgi apparatus of eukaryotes.
Pssm-ID: 464485 [Multi-domain] Cd Length: 521 Bit Score: 707.98 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 417 QLLESIGHLQKERDRYAEQIQVEGRVWKDKTEQLLTQVALVAEERDQNISRVQELEAAITELKSAAALLSQEREAQnkae 496
Cdd:pfam15070 1 QLMESLKQLQTERDQYAENLKEEGAVWQQKMQQLSEQVRTLREEKERSVSQVQELETSLAELKNQAAVPPAEEEQP---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 497 pqSSEPSERELALEEVLNTLQQDKDAVTAQFQAQLRDNEQLSRLCAEQETRLGELERRVENQVQEEEDRRRMLEDVQSDK 576
Cdd:pfam15070 77 --PAGPSEEEQRLQEEAEQLQKELEALAGQLQAQVQDNEQLSRLNQEQEQRLLELERAAERWGEQAEDRKQILEDMQSDR 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 577 ATISRALTQNRTLKDQLAELQNGFVKVTNENMELTNAIQSELHVKKELARRMGELQEELHNIKEQLEVKSQESQGLLAQR 656
Cdd:pfam15070 155 ATISRALSQNRELKEQLAELQNGFVKLTNENMELTSALQSEQHVKKELAKKLGQLQEELGELKETLELKSQEAQSLQEQR 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 657 EQLVAHLQQYSAGYQALASEREQLHHQYLQQVQLMDRLHHDESQGRVELEISHSQLNQAQEQLELLVRDNEQLKSEVREL 736
Cdd:pfam15070 235 DQYLAHLQQYVAAYQQLASEKEELHKQYLLQTQLMDRLQHEEVQGKVAAEMARQELQETQERLEALTQQNQQLQAQLSLL 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 737 LNSSAlasssldhGEGRESPQ-QEDSISASIIIPEDFENQKEMEQFIRGALAQVEAERDEARRQLEEEHRLHLAARYQAA 815
Cdd:pfam15070 315 ANPGE--------GDGLESEEeEEEAPRPSLSIPEDFESREAMVAFFNSALAQAEEERAELRRQLKEQKRRCRRLAQQAA 386
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 816 vALRLEQQHQSHKadhdqhdhahahdqhahcdhdHDHSEGGVPVEVHQALQVAMEKLQHRFTSLMQEKADLKERVEELEH 895
Cdd:pfam15070 387 -PAQEEPEHEAHA---------------------PGTGGDSVPVEVHQALQVAMEKLQSRFTELMQEKADLKERVEELEH 444
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1698335935 896 RCIQLSGETDTIGEYIALYQSQRAIMKQKHHEKEQYINMLAQDKEEMKMKLAELQDLVMRLVAERNDWYSRYTGAVA 972
Cdd:pfam15070 445 RCIQLSGETDTIGEYIALYQSQRAILKQRHREKEEYISRLAQDKEEMKVKLLELQELVLRLVGERNEWYGKYLAAAQ 521
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
270-894 |
5.03e-19 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 93.08 E-value: 5.03e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 270 QTALQYTQQAARQKSAEAEELNNRLQSSKQRVSELERTLSSVSTQQKQFEKHNKELEKERDSLRLELFRLNNVSEETKQQ 349
Cdd:COG1196 210 EKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 350 NSELSEQIklsneekgamkfevEDLRKRLELADLMLQQcssqsdptsATQQAQLLLEEKQQLEMHNHQLLESIGHLQKER 429
Cdd:COG1196 290 EYELLAEL--------------ARLEQDIARLEERRRE---------LEERLEELEEELAELEEELEELEEELEELEEEL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 430 DRYAEQIQVEGRVWKDKTEQLLTQVALVAEERDQNISRVQELEAAITELKSAAALLSQEREAQNKAEpqssepsERELAL 509
Cdd:COG1196 347 EEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALL-------ERLERL 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 510 EEVLNTLQQDKDAVTAQFQAQLRDNEQLSRLCAEQETRLGELERRVENQVQEEEDRRRMLEDVQsdkatisRALTQNRTL 589
Cdd:COG1196 420 EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELL-------EELAEAAAR 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 590 KDQLAELQngfvkvtnENMELTNAIQSELHVKKELARRMGELQEELHNIKEQLEVKSQESQGLLAQR--------EQLVA 661
Cdd:COG1196 493 LLLLLEAE--------ADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIvveddevaAAAIE 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 662 HLQQYSAGYQALASEREQLHHQYLQQVQLMDRLHHDESQGRVELEISHSQLNQAQEQLELLVRDNEQLKSEVRELLNSSA 741
Cdd:COG1196 565 YLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAG 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 742 LASSSLDHGEGRESPQQEDSISASIIIPEDFENQKEMEQFIRGALAQVEAERDEARRQLEEEHRLHLAARYQAAVALRLE 821
Cdd:COG1196 645 RLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEE 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 822 QQHQSHKADHDQHDHAHAHDQHAHCDHDHDHSEGGVPVEVHQA----LQVAMEKL--------------QHRFTSLMQEK 883
Cdd:COG1196 725 ALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERelerLEREIEALgpvnllaieeyeelEERYDFLSEQR 804
|
650
....*....|.
gi 1698335935 884 ADLKERVEELE 894
Cdd:COG1196 805 EDLEEARETLE 815
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
188-951 |
2.69e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 90.89 E-value: 2.69e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 188 ERELETRNQELAAALDSSNLTNSQLNTKLDQLTQQTRGLTEQLQKERKEFEDKHSKehgamreqlqvhiqtIGILVSEKS 267
Cdd:TIGR02168 213 ERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEK---------------LEELRLEVS 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 268 ELQTALQYTQQAARQKSAEAEELNNRLQSSKQRVSELERTLSSVSTQQKQFEKHNKELEKERDSLRLELFRLNNVSEETK 347
Cdd:TIGR02168 278 ELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 348 QQNSELSEQIKLSNEEKGAMKFEVEDLRKrlELADLMLQQcssqsdpTSATQQAQLLLEEKQQLEMHNHQLLESIGHLQK 427
Cdd:TIGR02168 358 AELEELEAELEELESRLEELEEQLETLRS--KVAQLELQI-------ASLNNEIERLEARLERLEDRRERLQQEIEELLK 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 428 ERDRyaeqiqvegrvwkdktEQLLTQVALVAEERDQNISRVQELEAAITELKSAAALLSQEREAQNKAEPQSSEPSEREL 507
Cdd:TIGR02168 429 KLEE----------------AELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLD 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 508 ALEEVLNTLQQDKDAVTAQFQAQLRDNEQLSRL-----CAEQ-----ETRLGEL------------ERRVENQVQEEEDR 565
Cdd:TIGR02168 493 SLERLQENLEGFSEGVKALLKNQSGLSGILGVLselisVDEGyeaaiEAALGGRlqavvvenlnaaKKAIAFLKQNELGR 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 566 RRMLEDVQSDKATISRALTQNRTLKDQLAELQNGFVKVTNENMELTNAIQSELHVKKELA---RRMGELQEELHNIKEQL 642
Cdd:TIGR02168 573 VTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDnalELAKKLRPGYRIVTLDG 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 643 EV----------KSQESQGLLAQR-------EQLVAHLQQYSAGYQALASEREQLhHQYLQQVQLMDRLHHDESQGRVEL 705
Cdd:TIGR02168 653 DLvrpggvitggSAKTNSSILERRreieeleEKIEELEEKIAELEKALAELRKEL-EELEEELEQLRKELEELSRQISAL 731
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 706 EISHSQLNQAQEQLELLVRDNEQLKSEVREllnssalasssldhgegRESPQQEDSISASIIIPEDFENQKEMEQFIRGA 785
Cdd:TIGR02168 732 RKDLARLEAEVEQLEERIAQLSKELTELEA-----------------EIEELEERLEEAEEELAEAEAEIEELEAQIEQL 794
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 786 LAQVEAERDEARRQLEEEHRLHLAARYQAAVALRLEQQHQSHKADHDQHDHAHAHDQHAHCDHDHDHSEggvpvevhqaL 865
Cdd:TIGR02168 795 KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEE----------L 864
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 866 QVAMEKLQHRFTSLMQEKADLKERVEELEHRCIQLSGETDTIGEyialyqsQRAIMKQKHHEKEQYINMLAQDKEEMKMK 945
Cdd:TIGR02168 865 EELIEELESELEALLNERASLEEALALLRSELEELSEELRELES-------KRSELRRELEELREKLAQLELRLEGLEVR 937
|
....*.
gi 1698335935 946 LAELQD 951
Cdd:TIGR02168 938 IDNLQE 943
|
|
| GM130_C |
pfam19046 |
GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 ... |
1042-1090 |
7.50e-18 |
|
GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 protein that is bound by the GRASP65 PDZ domain pfam04495.
Pssm-ID: 465957 Cd Length: 46 Bit Score: 77.81 E-value: 7.50e-18
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1698335935 1042 PKEGGTAQQIMQLLHEIQNPQgtarSPPFLGENPCIPFFYRPDEQDEVK 1090
Cdd:pfam19046 2 PPENPTAQQIMQLLPEIQNPQ----EHPGLGSNPCIPFFYRADENDEVK 46
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
249-802 |
2.31e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 87.68 E-value: 2.31e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 249 REQLQVHIQTIGILVSEKSELQTALQYTQQAARQKSAEAEELNNRLQSSKQRVSELERTLSSVSTQQKQFEKHNKELEKE 328
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEER 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 329 RDSLRLELFRLNNVSEETKQQNSELSEQIKLSNEEKGAMKFEVEDLRKRLELADLMLQQCSSQSDptSATQQAQLLLEEK 408
Cdd:COG1196 318 LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE--ELAEELLEALRAA 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 409 QQLEMHNHQLLESIGHLQKERDRYAEQIQVEGRVWKDKTEQLLTQVALVAEERDQNISRVQELEAAITELKSAAALLSQE 488
Cdd:COG1196 396 AELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALL 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 489 REAQNKAEPQSSEPSERELALEEVLNTLQQDKDAVTAQFQAQLR-------DNEQLSRLCAEQETRLGELERRVENQVQE 561
Cdd:COG1196 476 EAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLrglagavAVLIGVEAAYEAALEAALAAALQNIVVED 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 562 EEDRRRMLEDVQSDKATISRALTQNRTLKDQLAELQNgfvkVTNENMELTNAIQSELHVKKELARRMGELQEELHNIKEQ 641
Cdd:COG1196 556 DEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAAL----ARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAAR 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 642 LEVKSQESQGLLAQREQLVAHLQQYSAGYQALASEREQLHHQYLQQVQLMDRLhhDESQGRVELEISHSQLNQAQEQLEL 721
Cdd:COG1196 632 LEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEEL--AERLAEEELELEEALLAEEEEEREL 709
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 722 LVRDNEQLKSEVRELLNSSALASSSLDHGEGRESPQQEDSISASIIIPEDFEnqkemeqfirgaLAQVEAERDEARRQLE 801
Cdd:COG1196 710 AEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPD------------LEELERELERLEREIE 777
|
.
gi 1698335935 802 E 802
Cdd:COG1196 778 A 778
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
187-678 |
1.29e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 72.28 E-value: 1.29e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 187 NERELETRNQELAaaldssnltnsQLNTKLDQLTQQTRGLTEQLQKERKEFEDkhskehgamreqlqvhiqtigiLVSEK 266
Cdd:COG1196 314 LEERLEELEEELA-----------ELEEELEELEEELEELEEELEEAEEELEE----------------------AEAEL 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 267 SELQTALQYTQQAARQKSAEAEELNNRLQSSKQRVSELERTLSSVSTQQKQFEKHNKELEKERDSLRLELFRLNNVSEET 346
Cdd:COG1196 361 AEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEE 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 347 KQQNSELSEQIKLSNEEKGAMKFEVEDLRKRLELADLMLQQCSSQSdptsatQQAQLLLEEKQQLEMHNHQLLESIGHLQ 426
Cdd:COG1196 441 EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL------AEAAARLLLLLEAEADYEGFLEGVKAAL 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 427 KERDRYAEQIQVEGRVWKDKTEQLLTQVALVAEERDQNISRVQELEAAITELKsAAALLSQEREAQNKAEPQSSEPSERE 506
Cdd:COG1196 515 LLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLK-AAKAGRATFLPLDKIRARAALAAALA 593
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 507 LALEEVLNTLQQDKDAVTAQFQAQLRDNEQLSRLCAEQETRLGELERRVENQVQEEEDRRRMLEDVQSDKATISRALTQN 586
Cdd:COG1196 594 RGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAA 673
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 587 RTLKDQLAELQngfvkvtnENMELTNAIQSELHVKKELARRMGELQEELHNIKEQLEVKSQESQGLLAQREQLVAHLQQY 666
Cdd:COG1196 674 LLEAEAELEEL--------AERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEE 745
|
490
....*....|..
gi 1698335935 667 SAGYQALASERE 678
Cdd:COG1196 746 ELLEEEALEELP 757
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
445-961 |
1.91e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.89 E-value: 1.91e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 445 DKTEQLLTQVALVAEERDQNIS----------RVQELEAAITELKSAAALLsQEREAQNKAEPQSSEPSERELALEEVLN 514
Cdd:COG1196 182 EATEENLERLEDILGELERQLEplerqaekaeRYRELKEELKELEAELLLL-KLRELEAELEELEAELEELEAELEELEA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 515 TLQQDKDAVTAQFQAQLRDNEQLSRLCAEQETRLGELERRVENQVQEEEDRRRMLEDVQSDKATISRALTQNRTLKDQLA 594
Cdd:COG1196 261 ELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELE 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 595 ELQNGFVKVTNENMELTNAIQSELHVKKELARRMGELQEELHNIKEQLEVKSQESQGLLAQREQLVAHLQQYSAGYQALA 674
Cdd:COG1196 341 ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 675 SEREQLHHQYLQQVQLMDRLHHDESQGRVELEISHSQLNQAQEQLELLVRDNEQLKSEVRELLNSSALASSSLDHGEGRE 754
Cdd:COG1196 421 EELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 755 spQQEDSISASIIIPEDFENQKEMEQFIRGALAQVEAERDEARRQLEEehRLHLAARYQAAVALRLEQQHQSHKADHDQH 834
Cdd:COG1196 501 --ADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAA--ALQNIVVEDDEVAAAAIEYLKAAKAGRATF 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 835 DHAHAHDQHAHCDHDHDHSEGGVPVEVHQALQVAMEKLQHRFTSLMQEKADLKERVE-------ELEHRCIQLSGETDTI 907
Cdd:COG1196 577 LPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEaalrravTLAGRLREVTLEGEGG 656
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 1698335935 908 GEYIALYQSQRAIMKQKHHEKEQYINMLAQDKEEMKMKLAELQDLVMRLVAERN 961
Cdd:COG1196 657 SAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELA 710
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
157-802 |
2.05e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.08 E-value: 2.05e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 157 ESLRQLSQQLNGLVSGSSVAYVNGDSGSSGNERELETRNQELAAALDSSNLTNSQLNTKLDQLTQQTRGLTEQLQKERKE 236
Cdd:TIGR02168 347 EELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEEL 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 237 FEDKHSKEHGAMREQLQVHIQTIGILVSEKSELQTALQYTQQAARQKSAEAEELNNRLQSSKQRVSELERTLSSVSTQQK 316
Cdd:TIGR02168 427 LKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSE 506
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 317 --QFEKHNKELEKERDSLRLELF----------------RLNNVseETKQQNSELSEQIKLSNEEKGAMKFEVEDLRK-- 376
Cdd:TIGR02168 507 gvKALLKNQSGLSGILGVLSELIsvdegyeaaieaalggRLQAV--VVENLNAAKKAIAFLKQNELGRVTFLPLDSIKgt 584
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 377 -----RLELADLMLQQCSSQSDPTSATQQAQLLLEEkqqleMHNHQL----LESIGHLQKERDRYAEQIQVEGRVWKdkT 447
Cdd:TIGR02168 585 eiqgnDREILKNIEGFLGVAKDLVKFDPKLRKALSY-----LLGGVLvvddLDNALELAKKLRPGYRIVTLDGDLVR--P 657
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 448 EQLLT----QVALVAEERDQNISrvqELEAAITELKSAAALLSQEREAqnkAEPQSSEPSERELALEEVLNTLQQDKDAV 523
Cdd:TIGR02168 658 GGVITggsaKTNSSILERRREIE---ELEEKIEELEEKIAELEKALAE---LRKELEELEEELEQLRKELEELSRQISAL 731
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 524 TAQFQAQLRDNEQLSRLCAEQETRLGELERRVENQVQEEEDRR----RMLEDVQSDKATISRALTQNRTLKDQLAELQNG 599
Cdd:TIGR02168 732 RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEeelaEAEAEIEELEAQIEQLKEELKALREALDELRAE 811
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 600 FVKVTNENMELTNAIQSELHVKKELARRMGELQEELHNIKEQLE--VKSQESQGLL--AQREQLVAHLQQYSAGYQALAS 675
Cdd:TIGR02168 812 LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIEslAAEIEELEELieELESELEALLNERASLEEALAL 891
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 676 EREQLhHQYLQQVQLMDRLHHDESQGRVELEISHSQLNQAQEQLELLVRDNEQLKSEVRELLNSSALASSSLDHGEGRES 755
Cdd:TIGR02168 892 LRSEL-EELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEA 970
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*
gi 1698335935 756 PQQEDSISASII--------IPEDFENQKEMEQFIRgalAQVEaERDEARRQLEE 802
Cdd:TIGR02168 971 RRRLKRLENKIKelgpvnlaAIEEYEELKERYDFLT---AQKE-DLTEAKETLEE 1021
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
190-825 |
3.56e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 3.56e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 190 ELETRNQELAAALDSSNLTNSQLNTKLDQLTQQTRGLTEQLQKERKEFEDKhSKEHGAMREQLQVHIQTIGILVSEKSEL 269
Cdd:TIGR02168 299 RLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEEL-KEELESLEAELEELEAELEELESRLEEL 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 270 QTALQYTQQAARQKSAEAEELNNRLQSSKQRVSELERTLSSVSTQQKQFEKHNKELEKERDSLRL-----ELFRLNNVSE 344
Cdd:TIGR02168 378 EEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELeeleeELEELQEELE 457
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 345 ETKQQNSELSEQIKLSNEEKGAMKFEVEDLRKRLELADLMLQQCSSQSDPTSAtqqaqlLLEEKQQLEMHNHQLLESI-- 422
Cdd:TIGR02168 458 RLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKA------LLKNQSGLSGILGVLSELIsv 531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 423 -------------GHLQ------KERDRYAEQIQVEGRVWK----------------DKTEQLLTQ--VALVAEERDQNI 465
Cdd:TIGR02168 532 degyeaaieaalgGRLQavvvenLNAAKKAIAFLKQNELGRvtflpldsikgteiqgNDREILKNIegFLGVAKDLVKFD 611
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 466 SRVQELEAAI-------TELKSAAALLSQEREAQN-----------------KAEPQSSEPSERELALEEVlntlqqdkd 521
Cdd:TIGR02168 612 PKLRKALSYLlggvlvvDDLDNALELAKKLRPGYRivtldgdlvrpggvitgGSAKTNSSILERRREIEEL--------- 682
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 522 avTAQFQAQLRDNEQLSRLCAEQETRLGELERRVENQVQEEEDRRRMLEDVQSDkatISRALTQNRTLKDQLAELQNGFV 601
Cdd:TIGR02168 683 --EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD---LARLEAEVEQLEERIAQLSKELT 757
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 602 KVTNENMELTNAIQSELHVKKELARRMGELQEELHNIKEQLEVKSQESQGLLAQREQLVAHLQQYSAGYQALASEREQLH 681
Cdd:TIGR02168 758 ELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATE 837
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 682 HQYLQQVQLMDRLHHDESQGRVELEISHSQLNQAQEQLELLVRDNEQLKSEVRELLNSSALASSSLDHGEGRESPQQEDS 761
Cdd:TIGR02168 838 RRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRREL 917
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1698335935 762 ISAsiiipedfenQKEMEQFIRgALAQVEAERDEARRQLEEEHRL---HLAARYQAAVALRLEQQHQ 825
Cdd:TIGR02168 918 EEL----------REKLAQLEL-RLEGLEVRIDNLQERLSEEYSLtleEAEALENKIEDDEEEARRR 973
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
249-585 |
3.91e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 3.91e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 249 REQLQVHIQTIGILVSEKSELQTALQYTQQAARQKSAEAEELNNRLQSSKQRVSELERTLSSVSTQQKQFEKHNKELEKE 328
Cdd:TIGR02168 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE 762
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 329 RDSLRLELFRLNNVSEETKQQNSELSEQIKLSNEEKGAMKFEVEDLRKRL-----ELADLMLQQCSSQSDPTSATQQAQL 403
Cdd:TIGR02168 763 IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELtllneEAANLRERLESLERRIAATERRLED 842
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 404 LLEEKQQLEMHNHQLLESIGHLQKERDRYAEQIQvegrVWKDKTEQLLTQVALVAEERDQNISRVQELEAAITELKsaaa 483
Cdd:TIGR02168 843 LEEQIEELSEDIESLAAEIEELEELIEELESELE----ALLNERASLEEALALLRSELEELSEELRELESKRSELR---- 914
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 484 llsQEREAQNKAEPQSsepserELALEEVLNTLQQDKDAVTAQFQAQLRDNEQLSRLC----AEQETRLGELERRVEN-- 557
Cdd:TIGR02168 915 ---RELEELREKLAQL------ELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIeddeEEARRRLKRLENKIKElg 985
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1698335935 558 --------QVQEEEDRRRML----EDVQSDKATISRALTQ 585
Cdd:TIGR02168 986 pvnlaaieEYEELKERYDFLtaqkEDLTEAKETLEEAIEE 1025
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
189-735 |
4.42e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 64.32 E-value: 4.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 189 RELETRNQELAAALDSSNLTNSQLNTKLDQLTQQTRGLTEQLQKERKEFEDKHS------KEHGAMREQLQVHIQTIGIL 262
Cdd:TIGR02169 318 EDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAeleevdKEFAETRDELKDYREKLEKL 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 263 VSEKSELQTALQYTQQAARQKSAEAEELNNRLQSSKQRVSELERTLSSVSTQQKQFEKHNKELEKERDSLRLELFRLNN- 341
Cdd:TIGR02169 398 KREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEe 477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 342 ---VSEETKQQNSELSE---QIKLSNEEKGAMKFEVEDLRKRLE-----LADLM-----------------LQQCSSQSD 393
Cdd:TIGR02169 478 ydrVEKELSKLQRELAEaeaQARASEERVRGGRAVEEVLKASIQgvhgtVAQLGsvgeryataievaagnrLNNVVVEDD 557
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 394 PTsATQQAQLLLEEKQQL-------EMHNHQLLESIGHLQKERDRYAEQIQVEgrvwkDKTEQLLTQV---ALVAEE--- 460
Cdd:TIGR02169 558 AV-AKEAIELLKRRKAGRatflplnKMRDERRDLSILSEDGVIGFAVDLVEFD-----PKYEPAFKYVfgdTLVVEDiea 631
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 461 -RDQNIS-RVQELEAAITElKSAA---ALLSQEREAQNKAE--PQSSEPSERELALEEVLNTLQQDKDAvtaqfQAQLRD 533
Cdd:TIGR02169 632 aRRLMGKyRMVTLEGELFE-KSGAmtgGSRAPRGGILFSRSepAELQRLRERLEGLKRELSSLQSELRR-----IENRLD 705
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 534 neQLSRLCAEQETRLGELERRVENQVQEEEDRRRMLEDVQSDKATISRALTQNRTLKDQL-AELQNGFVKVTNENMELTN 612
Cdd:TIGR02169 706 --ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELeARIEELEEDLHKLEEALND 783
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 613 AIQSELHVK-KELARRMGELQEELHNIKEQL---EVKSQESQGLLAQREQLVAHLQQYSAGYQALASEREQLHHQYLQQV 688
Cdd:TIGR02169 784 LEARLSHSRiPEIQAELSKLEEEVSRIEARLreiEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKK 863
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 1698335935 689 QLMDRlhhdesqgrvELEISHSQLNQAQEQLELLVRDNEQLKSEVRE 735
Cdd:TIGR02169 864 EELEE----------ELEELEAALRDLESRLGDLKKERDELEAQLRE 900
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
249-663 |
7.50e-10 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 63.44 E-value: 7.50e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 249 REQLQVHIQTIGILVSEKSELQTALQYTQQAARQKSAEAEELNNRLQSSKQRVSELERTLSSVST---QQKQFEKHNKEL 325
Cdd:PRK04863 278 ANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTalrQQEKIERYQADL 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 326 EKerdsLRLELFRLNNVSEETKQQNSELSEQIKLSNEEKGAMKFEVEDLRKRLELADLMLQQcssqsdptsaTQQAQLLL 405
Cdd:PRK04863 358 EE----LEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQ----------YQQAVQAL 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 406 EEKQQLEMHNHQLLESIGHLQKERDRYAEQIQVEgrvwKDKTEQLLTQVALVAEERDQNISRVQELEAAITEL---KSAA 482
Cdd:PRK04863 424 ERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEE----LLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSeawDVAR 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 483 ALLSQEREAQNKAepQSSEPSERELA-LEEVLNtLQQDKDAVTAQFQ----AQLRDNEQLSRLCAEQETRLGELERRVEN 557
Cdd:PRK04863 500 ELLRRLREQRHLA--EQLQQLRMRLSeLEQRLR-QQQRAERLLAEFCkrlgKNLDDEDELEQLQEELEARLESLSESVSE 576
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 558 QVQEEEDRRRMLEDVQSDKATISRALTQNRTLKDQLAELQNGFVKVTNENMELTNAIQSELHVKKELARRMGELQEELHN 637
Cdd:PRK04863 577 ARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQA 656
|
410 420
....*....|....*....|....*.
gi 1698335935 638 IKEQLEVKSQESQGLLAQREQLVAHL 663
Cdd:PRK04863 657 LDEEIERLSQPGGSEDPRLNALAERF 682
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
274-949 |
1.86e-09 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 61.91 E-value: 1.86e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 274 QYTQQAARQKS------AEAEELNNRLQSSKQRVSELERTLSSVSTQQKQFEKHNKELEKERDSLRLELFRLNNVSEETK 347
Cdd:TIGR00618 177 QYTQLALMEFAkkkslhGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 348 QQNSELSEQIKlSNEEKGAMKFEVEDLRKRLELADLMLQQCSSQSDPTSATQQAQLLLEEKQQLEMHNHQLLESIGHLQK 427
Cdd:TIGR00618 257 KKQQLLKQLRA-RIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVK 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 428 ERDRYAEQIQVEG---------RVWKDKTEQLLTQVALVAEERDQNISRVQELEAAITELKSAAALLSQEREAQNKAEPQ 498
Cdd:TIGR00618 336 QQSSIEEQRRLLQtlhsqeihiRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 499 SSEpserelaleevLNTLQQDKDAVTAQFQAQLRDNEQLsRLCAEQETRLGELERRVENQVQEEEDRRRMLEdvqSDKAT 578
Cdd:TIGR00618 416 TSA-----------FRDLQGQLAHAKKQQELQQRYAELC-AAAITCTAQCEKLEKIHLQESAQSLKEREQQL---QTKEQ 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 579 ISRALTQNRTLKDQLAELQNGFVKVTNENMELTNAIQSELHVKKELARRMGELQEELHNIKEQLEVKSQESQGLLAQREQ 658
Cdd:TIGR00618 481 IHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRAS 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 659 LVAHLQQYSAGYQALASEREQLHHQYLQQVQLMDRLHHdESQGRVELEISHSQLNQAQEqLELLVRDNEQLKSEVRELLN 738
Cdd:TIGR00618 561 LKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQD-LTEKLSEAEDMLACEQHALL-RKLQPEQDLQDVRLHLQQCS 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 739 SSALASSSLDHGEGRESPQQEDSISASIIIpedfENQKEMEQFIRGALAQVEAERDEARRQLEEEHRLHLAARYQAAVAL 818
Cdd:TIGR00618 639 QELALKLTALHALQLTLTQERVREHALSIR----VLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIE 714
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 819 RL-----EQQHQSHKADHDQHDHAHAHDQHAHCDHDHDHSEGGVPVEVHQALQVAMEKLQHRFTSLMQEKADLKERVEEL 893
Cdd:TIGR00618 715 EYdrefnEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLR 794
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 1698335935 894 EHRCIQLSGETDTIGEYIALYQSQRAIMKQKhhekeqyinmLAQDKEEMKMKLAEL 949
Cdd:TIGR00618 795 EEDTHLLKTLEAEIGQEIPSDEDILNLQCET----------LVQEEEQFLSRLEEK 840
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
188-643 |
3.89e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 60.85 E-value: 3.89e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 188 ERELEtRNQELAAALDSSNLTNSQLNTKLDQLTQQTRGLTEQLQKERKEFED--KHSKEHGAMREQLQVHIQTIGILVSE 265
Cdd:PRK03918 227 EKEVK-ELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEEleEKVKELKELKEKAEEYIKLSEFYEEY 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 266 KSELQ----TALQYTQQAA--RQKSAEAEELNNRLQSSKQRVSELERTLSSVSTQQKQFEKhNKELEKERDSLR-----L 334
Cdd:PRK03918 306 LDELReiekRLSRLEEEINgiEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEE-AKAKKEELERLKkrltgL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 335 ELFRLNNVSEETKQQNSELSEQIKLSNEEKGAMKFEVEDLRKRLELADLMLQQCSSQSDPTSATQQAQLLLEEKQQLEMH 414
Cdd:PRK03918 385 TPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRI 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 415 NHQLLESIghlQKERDRYAEQIQVEGRVWKDKTEQLLTQVALVAEERDQNISR--VQELEAAITELKsaaalLSQEREAQ 492
Cdd:PRK03918 465 EKELKEIE---EKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKynLEELEKKAEEYE-----KLKEKLIK 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 493 NKAEPQSSEPS-ERELALEEVLNTLQQDKDAVTAQFQAQLRDNEQLSRLCAEQ-ETRLGELE---------RRVENQVQE 561
Cdd:PRK03918 537 LKGEIKSLKKElEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEElEERLKELEpfyneylelKDAEKELER 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 562 EEDRRRMLEDVQSDK-ATISRALTQNRTLKDQLAELQNGFV-----KVTNENMELTNAIQSELHVKKELARRMGELQEEL 635
Cdd:PRK03918 617 EEKELKKLEEELDKAfEELAETEKRLEELRKELEELEKKYSeeeyeELREEYLELSRELAGLRAELEELEKRREEIKKTL 696
|
....*...
gi 1698335935 636 HNIKEQLE 643
Cdd:PRK03918 697 EKLKEELE 704
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
226-688 |
9.75e-09 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 59.40 E-value: 9.75e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 226 LTEQLQKERKEFEDKHSKEHGAMREQLQVHIQTIGILVSEKSELQTALQytqqaarqksaEAEELNNRLQSSKQRVSELE 305
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQE-----------ELEELEEELEELEAELEELR 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 306 RTLSSVStQQKQFEKHNKELEKERDSLRLELFRLNNVsEETKQQNSELSEQIKLSNEEKGAMKFEVEDLRKRLELADLM- 384
Cdd:COG4717 116 EELEKLE-KLLQLLPLYQELEALEAELAELPERLEEL-EERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEe 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 385 LQQCSSQSDptSATQQAQLLLEEKQQLEMHNHQLLESIGHLQKERDRYAEQIQVEGRVWKDKTEQLLTQVALVAEERDQN 464
Cdd:COG4717 194 LQDLAEELE--ELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSL 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 465 ISRVQELEAAITELKSAAALLSQEREAQNKAEPQSSEPSER-----ELALEEVLNTLQQDKDAVTAQFQAQLRDNEQLSR 539
Cdd:COG4717 272 ILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPAleeleEEELEELLAALGLPPDLSPEELLELLDRIEELQE 351
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 540 LCAEQETRLGELERRV----------ENQVQEEEDRRRMLEDVQSDKATISRALTQNRTLKDQLAELQNGFVKVTNEnmE 609
Cdd:COG4717 352 LLREAEELEEELQLEEleqeiaallaEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEE--E 429
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 610 LTNAIQSELHVKKELARRMGELQEELHNIKEQLEV--KSQESQGLLAQREQLVAHLQQ-------YSAGYQALASEREQL 680
Cdd:COG4717 430 LEEELEELEEELEELEEELEELREELAELEAELEQleEDGELAELLQELEELKAELRElaeewaaLKLALELLEEAREEY 509
|
....*...
gi 1698335935 681 HHQYLQQV 688
Cdd:COG4717 510 REERLPPV 517
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
188-648 |
5.27e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 57.44 E-value: 5.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 188 ERELETRNQELAAALDSSNLTNSQLNTKLDQLTQQTRGLTEQLQkerKEFEDKHSKEhgamrEQLQVHIQTIGILVSEKS 267
Cdd:pfam15921 337 KRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQ---KLLADLHKRE-----KELSLEKEQNKRLWDRDT 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 268 ELQTALQYTQQAARQKSAEAEELNNRLQSSKQRVS-ELERTLSSVSTQQKQFEKHNK---ELEKERDSLRL---ELFRLN 340
Cdd:pfam15921 409 GNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQgQMERQMAAIQGKNESLEKVSSltaQLESTKEMLRKvveELTAKK 488
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 341 NVSEETKQQNSELSEQIKLSNEEKGAMKFEVEDLRKRLELADLMLQQCSSQSDPTSATQQA----QLLLEEKQQLEMHNH 416
Cdd:pfam15921 489 MTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTEcealKLQMAEKDKVIEILR 568
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 417 QLLESIGHLQKERDRYAEQIQVEgrvwKDKTEQLLTQVALVAEE----RDQNISRVQELEAAITELKSAAALLSQEREAQ 492
Cdd:pfam15921 569 QQIENMTQLVGQHGRTAGAMQVE----KAQLEKEINDRRLELQEfkilKDKKDAKIRELEARVSDLELEKVKLVNAGSER 644
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 493 NKAEPQSSEpsERELALEEVlNTLQQDKDAVTAQFQAQLRDNEQLSRlcaEQETRLGELERRVENQVQEEEDRRRMLEDV 572
Cdd:pfam15921 645 LRAVKDIKQ--ERDQLLNEV-KTSRNELNSLSEDYEVLKRNFRNKSE---EMETTTNKLKMQLKSAQSELEQTRNTLKSM 718
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 573 Q-SDKATISRALTQNRTLKDQLAELQNGFVKVTNENMELTNAIQSELHVKKE---LARRMGELQEELHNIKEQLEV-KSQ 647
Cdd:pfam15921 719 EgSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEknkLSQELSTVATEKNKMAGELEVlRSQ 798
|
.
gi 1698335935 648 E 648
Cdd:pfam15921 799 E 799
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
188-962 |
1.08e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.23 E-value: 1.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 188 ERELETRNQELAAALDSSNLTNSQLNTKLD----QLTQQTRGLTEQLQKERKEFEDKHSkEHGAMREQLQVHIQTIGILV 263
Cdd:TIGR02169 257 TEEISELEKRLEEIEQLLEELNKKIKDLGEeeqlRVKEKIGELEAEIASLERSIAEKER-ELEDAEERLAKLEAEIDKLL 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 264 SEKSELQTALQYTQQAARQKSAEAEELNNRLQSSKQRVSELERTLSSVSTQQKQFEKHNKELEKERDSLRLELFRLNNVS 343
Cdd:TIGR02169 336 AEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEEL 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 344 EETKQQNSELSEQIKLSNEEKGAMKFEVEDLRKRLELADLMLQQcsSQSDPTSATQQAQLLLEEKQQLEMHNHQLLESIG 423
Cdd:TIGR02169 416 QRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQ--LAADLSKYEQELYDLKEEYDRVEKELSKLQRELA 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 424 HLQKERdRYAEQIQVEGR----VWKDKTEQLLTQVALVAEERDQNISRVQ-----ELEAAITE----LKSAAALLSQERE 490
Cdd:TIGR02169 494 EAEAQA-RASEERVRGGRaveeVLKASIQGVHGTVAQLGSVGERYATAIEvaagnRLNNVVVEddavAKEAIELLKRRKA 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 491 AQ------NKAEPQSSEPS--ERELALEEVLNTLQQDKDAVTAQFQAqLRDNEQLSRLCAEQE--------TRLGEL--- 551
Cdd:TIGR02169 573 GRatflplNKMRDERRDLSilSEDGVIGFAVDLVEFDPKYEPAFKYV-FGDTLVVEDIEAARRlmgkyrmvTLEGELfek 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 552 -----------ERRVENQVQEEEDRRRMLEDVQSDKATISRALTQNRTLKDQLAELQNGFVKVTNENMELTNAIQSELHV 620
Cdd:TIGR02169 652 sgamtggsrapRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQE 731
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 621 KKELARRMGELQEELHNIKEQLEVKSQESQGLLAQREQLVAHLQQYSAGYQALasEREQLHHQYLQQVQLMDRLhhDESQ 700
Cdd:TIGR02169 732 EEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDL--EARLSHSRIPEIQAELSKL--EEEV 807
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 701 GRVELEISHsqLNQAQEQLELlvrDNEQLKSEVRELLNSSalasssldhgegRESPQQEDSISASIiipEDFENQKEmeq 780
Cdd:TIGR02169 808 SRIEARLRE--IEQKLNRLTL---EKEYLEKEIQELQEQR------------IDLKEQIKSIEKEI---ENLNGKKE--- 864
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 781 firgALAQVEAERDEARRQLEEEHRlhlaaryqaavalRLEQQHQSHKadhdqhdhahahdqhahcdhdhdhSEGGVPVE 860
Cdd:TIGR02169 865 ----ELEEELEELEAALRDLESRLG-------------DLKKERDELE------------------------AQLRELER 903
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 861 VHQALQVAMEKLQHRFTSLMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAImkQKHHEKEQYINMLA-QDK 939
Cdd:TIGR02169 904 KIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRV--EEEIRALEPVNMLAiQEY 981
|
810 820
....*....|....*....|...
gi 1698335935 940 EEMKMKLAELQDLVMRLVAERND 962
Cdd:TIGR02169 982 EEVLKRLDELKEKRAKLEEERKA 1004
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
157-682 |
1.27e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 55.82 E-value: 1.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 157 ESLRQLSQQLNGLVSGSSVAYVNGdsgssgnereLETRNQELAAALDSSNLTNSQLNTKLDQLT------QQTRGLTEQL 230
Cdd:PRK02224 187 GSLDQLKAQIEEKEEKDLHERLNG----------LESELAELDEEIERYEEQREQARETRDEADevleehEERREELETL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 231 QKERKEFEDKHS---KEHGAMREQLQVHIQTIGILVSEKSELQTALQYTqqaarqkSAEAEELNNRLQSSKQRVSELERT 307
Cdd:PRK02224 257 EAEIEDLRETIAeteREREELAEEVRDLRERLEELEEERDDLLAEAGLD-------DADAEAVEARREELEDRDEELRDR 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 308 LSSVSTQQKQFEKHNKELEKERDSLRLELFRLNNVSEETKQQNSELSEQIKLSNEEKGAMKFEVEDLRKRLELADLMLQQ 387
Cdd:PRK02224 330 LEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGN 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 388 CSSQSDptsatqqaqLLLEEKQQLemhNHQLLESIGHLQKERDRYAEQIQ-------------VEGRVWKDKTEQLLTQV 454
Cdd:PRK02224 410 AEDFLE---------ELREERDEL---REREAELEATLRTARERVEEAEAlleagkcpecgqpVEGSPHVETIEEDRERV 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 455 ALVAEERDQNISRVQELEAAITELKSAAALLSQEREAQNKAEPQSSEPSERELALEE---VLNTLQQDKDAVTAQFQAQl 531
Cdd:PRK02224 478 EELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEkreRAEELRERAAELEAEAEEK- 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 532 RDNEQLSRLCAEQE-TRLGELERRVEnQVQEEEDRRRMLEDVQSDKATISRALTQNRTLKDQLAELQNGFVKVTNENMEL 610
Cdd:PRK02224 557 REAAAEAEEEAEEArEEVAELNSKLA-ELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRER 635
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1698335935 611 TNAIQSELHvkkelARRMGELQEELHNIKEQLEVKSQESQGLLAQREQLVAHLQQYSAGYQALASEREQLHH 682
Cdd:PRK02224 636 KRELEAEFD-----EARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREA 702
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
281-735 |
1.74e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.46 E-value: 1.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 281 RQKSAEAEELNNRLQSSKQRVSELERTLSSVSTQQKQFEKHNKELEKERDSLRLELFRLNNVSEETKQQNSELSEQIKLS 360
Cdd:PRK03918 220 REELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLS 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 361 ------NEEKGAMKFEVEDLRKRLELADLMLQQCSSQSdptsatqqaqlllEEKQQLEMHNHQLLESIGHLQKERDRYAE 434
Cdd:PRK03918 300 efyeeyLDELREIEKRLSRLEEEINGIEERIKELEEKE-------------ERLEELKKKLKELEKRLEELEERHELYEE 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 435 QIQVEGRVWKDKTEQLLTQVALVAEERDQNISRVQELEAAITELKSAAALLSQEREAQNKA--EPQSSEPS----ERELA 508
Cdd:PRK03918 367 AKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAieELKKAKGKcpvcGRELT 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 509 LEEVLNTLqqdkdavtAQFQAQLRDNEQLSRLCAEQETRLGELERRVENQVQEEEDRRRMLEDVQSDKAT---------- 578
Cdd:PRK03918 447 EEHRKELL--------EEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELeeklkkynle 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 579 -ISRALTQNRTLKDQLAELQnGFVKVTNENMELTNAIQSELhvkKELARRMGELQEELHNIKEQLEVKSQESQGLLAQRE 657
Cdd:PRK03918 519 eLEKKAEEYEKLKEKLIKLK-GEIKSLKKELEKLEELKKKL---AELEKKLDELEEELAELLKELEELGFESVEELEERL 594
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1698335935 658 QlvahlqqysagyqalasEREQLHHQYLQQVQLMDRLHHDESqgrvELEISHSQLNQAQEQLELLVRDNEQLKSEVRE 735
Cdd:PRK03918 595 K-----------------ELEPFYNEYLELKDAEKELEREEK----ELKKLEEELDKAFEELAETEKRLEELRKELEE 651
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
215-665 |
2.14e-07 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 55.11 E-value: 2.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 215 KLDQLTQQTRGLTEQLQKERKEFEdkhskEHGAMREQLQVHIQTIGILVSEKSELQTALQYTQQAARQKSAEAEELNNRL 294
Cdd:pfam05483 371 RLEKNEDQLKIITMELQKKSSELE-----EMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLL 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 295 QSSKQRVSELERTLSSVSTQQKQFEKHNKELEKERDSLRLELFRLNNVSEETKQQNSELSEqiklsneekgamkfevedl 374
Cdd:pfam05483 446 QAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQ------------------- 506
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 375 rkrlELADLMLQQCSSQSDPTSATQQAQLLLEEKQQLEMHNHQLLESIGHLQKERDRYAEQIQVEGRVWKDKTEQLLTQV 454
Cdd:pfam05483 507 ----EASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEV 582
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 455 ALVAEERDQNISRVQELEAAITELKSAAALLSQEREA-QNKAEPQSSEPSEREL---ALEEVLNTLQQDKDAVTAQFQAQ 530
Cdd:pfam05483 583 LKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKAlKKKGSAENKQLNAYEIkvnKLELELASAKQKFEEIIDNYQKE 662
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 531 LRDNEqlsrlcAEQETRLGELERRVENQVQEEEDRRRMLEDVQSDKATISRALTQNRTLKDQLAELQNgfvkvtNENMEL 610
Cdd:pfam05483 663 IEDKK------ISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERD------SELGLY 730
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 1698335935 611 TNAIQSELHVKKELARRMGELQEELHNIKEQLEVKSQESQGLLAQREQLVAHLQQ 665
Cdd:pfam05483 731 KNKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKENTAILKD 785
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
563-972 |
3.17e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.56 E-value: 3.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 563 EDRRRMLEDVqsdkATIS-----RALTQNRtLKDqlaelqngfvkvTNENMELTNAIQSE-------LHVKKELARRMGE 630
Cdd:COG1196 155 EERRAIIEEA----AGISkykerKEEAERK-LEA------------TEENLERLEDILGElerqlepLERQAEKAERYRE 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 631 LQEELHNIKEQL-----EVKSQESQGLLAQREQLVAHLQQYSAGYQALASEREQLHHQYLQQVQLMDRLHHDESQGRVEL 705
Cdd:COG1196 218 LKEELKELEAELlllklRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAEL 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 706 EISHSQLNQAQEQLELLVRDNEQLKSEVRELLNSSALASSSLDHGEGREspqqedsisasiiipEDFENQKEMEQfirGA 785
Cdd:COG1196 298 ARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEEL---------------EEAEEELEEAE---AE 359
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 786 LAQVEAERDEARRQLEEEHRLHLAARYQAAVALRLEQQHQSHKADHDQHDHAHAHDQHAHCDHDHDHSEggvpvevhQAL 865
Cdd:COG1196 360 LAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEE--------ALA 431
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 866 QVAMEKLQHRftslmQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAIMKQKHHEKEQYINMLAQDKEEM--- 942
Cdd:COG1196 432 ELEEEEEEEE-----EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYegf 506
|
410 420 430
....*....|....*....|....*....|....*
gi 1698335935 943 -----KMKLAELQDLVMRLVAERNDWYSRYTGAVA 972
Cdd:COG1196 507 legvkAALLLAGLRGLAGAVAVLIGVEAAYEAALE 541
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
257-817 |
4.84e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.15 E-value: 4.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 257 QTIGILVSEKSELQTALQYTQQAARQKSA--EAEELNNRLQSSKQRVSELERTLSSVSTQQKQFEKHnkELEKERDSLRL 334
Cdd:COG4913 225 EAADALVEHFDDLERAHEALEDAREQIELlePIRELAERYAAARERLAELEYLRAALRLWFAQRRLE--LLEAELEELRA 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 335 ELFRLNNvseetkqqnselseqiklsneekgamkfEVEDLRKRLELADLMLQQCSsqsdptsaTQQAQLLLEEKQQLEMH 414
Cdd:COG4913 303 ELARLEA----------------------------ELERLEARLDALREELDELE--------AQIRGNGGDRLEQLERE 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 415 NHQLLESIGHLQKERDRYAEQIQV-------EGRVWKDKTEQLLTQVALVAEERDQNISRVQELEAAITELKSAAALLSQ 487
Cdd:COG4913 347 IERLERELEERERRRARLEALLAAlglplpaSAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEA 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 488 EREAQNKAepQSSEPSERELALEEVLNTLQQDKDAVtaQFQA---QLRDNEQLSRLCAEQ------------ETRLGELE 552
Cdd:COG4913 427 EIASLERR--KSNIPARLLALRDALAEALGLDEAEL--PFVGeliEVRPEEERWRGAIERvlggfaltllvpPEHYAAAL 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 553 RRVEN-------QVQEEEDRRRMLEDVQSDKATISRALTQNRT-----LKDQLAElQNGFVKVTNENmELTN---AIQSE 617
Cdd:COG4913 503 RWVNRlhlrgrlVYERVRTGLPDPERPRLDPDSLAGKLDFKPHpfrawLEAELGR-RFDYVCVDSPE-ELRRhprAITRA 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 618 LHVK----------------------------KELARRMGELQEELHNIKEQLEvKSQESQGLLAQREQLVAHLQQYSAG 669
Cdd:COG4913 581 GQVKgngtrhekddrrrirsryvlgfdnraklAALEAELAELEEELAEAEERLE-ALEAELDALQERREALQRLAEYSWD 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 670 YQALASEREQLHhqylqqvQLMDRLHH-DESQGRV-----ELEISHSQLNQAQEQLELLVRDNEQLKSEVRELLNSSALA 743
Cdd:COG4913 660 EIDVASAEREIA-------ELEAELERlDASSDDLaaleeQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDEL 732
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1698335935 744 SSSLDHGEGRESPQQEDSISASIIIPEDFENQKEMEQFIRGALAQVEAERDEARRQLEEEHRLHLaARYQAAVA 817
Cdd:COG4913 733 QDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFN-REWPAETA 805
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
294-530 |
5.07e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.23 E-value: 5.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 294 LQSSKQRVSELERTLSSVSTQQKQFEKHNKELEKERDSLRLELFRLNNVSEETKQQNSELSEQIKLSNEEKGAMKFEVED 373
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 374 LRKRLELADLMLQQCSSQSDPTSATQQAQLLLEEKQQLEMHNhqLLESIGHLQKERDRYAEQIQVEGRVWKDKTEQLLTQ 453
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVR--RLQYLKYLAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1698335935 454 VALVAEERDQNISRVQELEAAITELKSAAALLSQEREAQNKaepQSSEPSERELALEEVLNTLQQDKDAVTAQFQAQ 530
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAA---ELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
211-660 |
5.50e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.99 E-value: 5.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 211 QLNTKLDQLTQQTRGLTEQLQKERKEFEDKHSKEHGAMREQLQVHIQtigilvSEKSELQTALQYTQQAARQKSAE---- 286
Cdd:PTZ00121 1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEK------AEAAEKKKEEAKKKADAAKKKAEekkk 1392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 287 AEELNNRLQSSKQRVSELERT---------LSSVSTQQKQFEKHNKELEKERDSLRLElfrlNNVSEETKQQNSELSEQI 357
Cdd:PTZ00121 1393 ADEAKKKAEEDKKKADELKKAaaakkkadeAKKKAEEKKKADEAKKKAEEAKKADEAK----KKAEEAKKAEEAKKKAEE 1468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 358 KLSNEE---KGAMKFEVEDLRKRLELADLMLQQCSSQSDPTSATQQAQLLLEEKQQLEMHNHQLLESIGHLQK-ERDRYA 433
Cdd:PTZ00121 1469 AKKADEakkKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKaEEKKKA 1548
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 434 EQIQVEGRVWKDKTEQLLTQvALVAEERDQNISRVQELEAAITELKSAAALLSQEREAQNKAEPQSSEPSERELA----- 508
Cdd:PTZ00121 1549 DELKKAEELKKAEEKKKAEE-AKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAeelkk 1627
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 509 LEEVLNTLQQDKDAVTAQFQA--QLRDNEQLSRLCAEQETRLGELERRVENQVQEEEDRRRMLEDVQSDKATISRALTQN 586
Cdd:PTZ00121 1628 AEEEKKKVEQLKKKEAEEKKKaeELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEEL 1707
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1698335935 587 RTLKDQLAELQNGFVKVTNENMELTNAIQSELHVKKELARRMGELQEELHNIKEQLEVKSQESQGLLAQREQLV 660
Cdd:PTZ00121 1708 KKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVI 1781
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
508-735 |
8.95e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.46 E-value: 8.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 508 ALEEVLNTLQQDKDAVTAQFQAQLRDNEQLSRLCAEQETRLGELERRVENQVQEEEDRRRMLEDVQSDKATISRALTQNR 587
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 588 T-LKDQLAELQNgfvkvtnenMELTNAIQSELHVK--KELARRMGELQEELHNIKEQLEVKSQESQGLLAQREQLVAHLQ 664
Cdd:COG4942 104 EeLAELLRALYR---------LGRQPPLALLLSPEdfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1698335935 665 QYSAGYQALASEREQLHHQYLQQVQLMDRLHHDESQGRVELEishsQLNQAQEQLELLVRDNEQLKSEVRE 735
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELA----ELQQEAEELEALIARLEAEAAAAAE 241
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
221-946 |
9.85e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 53.05 E-value: 9.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 221 QQTRGLTEQLQKERKEFEDKHSKEHGAmrEQLQVHIQTIGILVSEKSELQTALQYTQQAAR--QKSAEAEELNNRLQSSK 298
Cdd:TIGR00618 236 QQTQQSHAYLTQKREAQEEQLKKQQLL--KQLRARIEELRAQEAVLEETQERINRARKAAPlaAHIKAVTQIEQQAQRIH 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 299 QRVSELERTLSSVSTQQKQFEKHNKELEKERDSLRLELFRLNNVSEETKQQNSELseqiklsneekgamkfevEDLRKRL 378
Cdd:TIGR00618 314 TELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIR------------------EISCQQH 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 379 ELADLMLQQcssQSDPTSATQQAQLLLEEKQQLEMHNHQLL-----ESIGHLQKERDRYAEQIQVEGRVWKDKTEQLLTQ 453
Cdd:TIGR00618 376 TLTQHIHTL---QQQKTTLTQKLQSLCKELDILQREQATIDtrtsaFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQ 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 454 VAlVAEERDQNISRvQELEAAITELKSAAALLSQEREAQNKAEPQSSEPSERELALEEVLNTLQQdkdavtaQFQAQLRD 533
Cdd:TIGR00618 453 CE-KLEKIHLQESA-QSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNP-------ARQDIDNP 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 534 NEQLSRLCAEQET--RLGELERRVENQVQEEEDRRrmledvQSDKATISRALTQNRTLKDQLAELQNGFVKVTNENMELT 611
Cdd:TIGR00618 524 GPLTRRMQRGEQTyaQLETSEEDVYHQLTSERKQR------ASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQ 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 612 NAIQSELHVKKELA----RRMGELQEELHNIKEQLEV--KSQESQGLLAQREQLVAHLQQYSAGYQALASEREQLhhQYL 685
Cdd:TIGR00618 598 DLTEKLSEAEDMLAceqhALLRKLQPEQDLQDVRLHLqqCSQELALKLTALHALQLTLTQERVREHALSIRVLPK--ELL 675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 686 QQVQL----MDRLHHDESQGRVELEISHSQLNQAQEQLELLVRDNEQLKSEVRELLNSSALASSSLDHGEGRESPQQEDS 761
Cdd:TIGR00618 676 ASRQLalqkMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTV 755
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 762 ISASIIIPEDFENQKEMEQFIRGALAQVEAERDEARRQLEEEhrlhlaaryQAAVALRLEQQHQSHKADHDQHDHAHAHD 841
Cdd:TIGR00618 756 LKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREED---------THLLKTLEAEIGQEIPSDEDILNLQCETL 826
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 842 QHAHCDHDHDHSEGGVPVEVHQALQVAMEKLQHRFTSLMQEKADLKERVEELE-HRCIQLSGETDTIGEYIALYQSQRAI 920
Cdd:TIGR00618 827 VQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLNgINQIKIQFDGDALIKFLHEITLYANV 906
|
730 740
....*....|....*....|....*.
gi 1698335935 921 MKQKHHEKEQYINMLAQDKEEMKMKL 946
Cdd:TIGR00618 907 RLANQSEGRFHGRYADSHVNARKYQG 932
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
459-802 |
1.59e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.37 E-value: 1.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 459 EERDQNISRVqelEAAITELKSAAALLSQEREAQNKAEPQSSEPSERELALE-EVLNTLQQDKDAVTAQFQAQLRDNEQL 537
Cdd:TIGR02168 182 ERTRENLDRL---EDILNELERQLKSLERQAEKAERYKELKAELRELELALLvLRLEELREELEELQEELKEAEEELEEL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 538 SRLCAEQETRLGELERRVENQVQEEEDRRRMLEDVQSDkatISRALTQNRTLKDQLAELQNGFVKVTNEnmeltnaiqse 617
Cdd:TIGR02168 259 TAELQELEEKLEELRLEVSELEEEIEELQKELYALANE---ISRLEQQKQILRERLANLERQLEELEAQ----------- 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 618 lhvKKELARRMGELQEELHNIKEQLEVKSQESQGLLAQREQLVAHLQQYSAGYQALASEREQLhhqylqqvqlmdrlhhd 697
Cdd:TIGR02168 325 ---LEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETL----------------- 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 698 eSQGRVELEishSQLNQAQEQLELLVRDNEQLKSEVRELLNSSALASSSLDHGEGRESPQQEDSISASII-IPEDFENQK 776
Cdd:TIGR02168 385 -RSKVAQLE---LQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEeLQEELERLE 460
|
330 340
....*....|....*....|....*.
gi 1698335935 777 EMEQFIRGALAQVEAERDEARRQLEE 802
Cdd:TIGR02168 461 EALEELREELEEAEQALDAAERELAQ 486
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
458-906 |
1.88e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 52.26 E-value: 1.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 458 AEERDQNISRVQELEAaitELKSAAALLSQEREAQNKAEPQSSEPSERELALEevlntlqQDKDAVT---AQFQAQLRDN 534
Cdd:COG3096 277 ANERRELSERALELRR---ELFGARRQLAEEQYRLVEMARELEELSARESDLE-------QDYQAASdhlNLVQTALRQQ 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 535 EQLSRLCAEqetrLGELERRVENQVQEEEDRRRMLEDVQsdkATISRALTQNRTLKDQLAELQNGFvkvtneNMELTNAI 614
Cdd:COG3096 347 EKIERYQED----LEELTERLEEQEEVVEEAAEQLAEAE---ARLEAAEEEVDSLKSQLADYQQAL------DVQQTRAI 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 615 QSELHVK-KELARRMGELQE-ELHNIKE-QLEVKSQESQ---GLLAQREQLV---AHLQQYSAGYQALAS-----EREQL 680
Cdd:COG3096 414 QYQQAVQaLEKARALCGLPDlTPENAEDyLAAFRAKEQQateEVLELEQKLSvadAARRQFEKAYELVCKiagevERSQA 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 681 HH-------QYLQQVQLMDRLHHDESQGRvELEISHSQLNQAQEQLELLVRdneqlksevrellnssalasssldhgegr 753
Cdd:COG3096 494 WQtarellrRYRSQQALAQRLQQLRAQLA-ELEQRLRQQQNAERLLEEFCQ----------------------------- 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 754 espqqedSISASIIIPEDFENQkemeqfirgaLAQVEAERDEARRQLEEehrlhlaaryQAAVALRLEQQHQSHKADHDQ 833
Cdd:COG3096 544 -------RIGQQLDAAEELEEL----------LAELEAQLEELEEQAAE----------AVEQRSELRQQLEQLRARIKE 596
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1698335935 834 HDHAHAHDQHAHCDHDHDHSEGGVPVEVHQALQVAMEKLQHRFTSLMQEKADLKERVEELE---HRCIQLSGETDT 906
Cdd:COG3096 597 LAARAPAWLAAQDALERLREQSGEALADSQEVTAAMQQLLEREREATVERDELAARKQALEsqiERLSQPGGAEDP 672
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
187-648 |
2.57e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.56 E-value: 2.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 187 NERELETRNQELAAALDSSNLTNSqlNTKLDQLTQQTRGLTEQLQKERKEFeDKHSKEHGAMREQLQVHIQTIGILVSEK 266
Cdd:TIGR04523 50 KNKEKELKNLDKNLNKDEEKINNS--NNKIKILEQQIKDLNDKLKKNKDKI-NKLNSDLSKINSEIKNDKEQKNKLEVEL 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 267 SELQTALQ-------YTQQAARQKSAEAEELNNRLQSSKQRVSELErtlssvsTQQKQFEKHNKELEKERDSLRLELFRL 339
Cdd:TIGR04523 127 NKLEKQKKenkknidKFLTEIKKKEKELEKLNNKYNDLKKQKEELE-------NELNLLEKEKLNIQKNIDKIKNKLLKL 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 340 N---NVSEETKQQNSELSEQIKLSNEEKGAMKFEVEDLRKRLELADLMLQQCSSQSDPTSATQQ-AQLLLEEKQ-QLEMH 414
Cdd:TIGR04523 200 ElllSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNkIKKQLSEKQkELEQN 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 415 NHQLLESIGHLQkerdryaeQIQVEGRVWKDKTEQ-----LLTQVALVAEERDQNISRVQELEAAITELKSAAALLSQER 489
Cdd:TIGR04523 280 NKKIKELEKQLN--------QLKSEISDLNNQKEQdwnkeLKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKEL 351
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 490 EAQNkaepqsSEPSERELALEEVLNTLQQDKDavtaQFQAQLRDNEQLsrlcaeqETRLGELERRVENQVQEEEDRRRML 569
Cdd:TIGR04523 352 TNSE------SENSEKQRELEEKQNEIEKLKK----ENQSYKQEIKNL-------ESQINDLESKIQNQEKLNQQKDEQI 414
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1698335935 570 EDVQSDKATISRaltQNRTLKDQLAELQNGFVKVTNENMELTNAIQSELHVKKELARRMGELQEELHNIKEQLEVKSQE 648
Cdd:TIGR04523 415 KKLQQEKELLEK---EIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKE 490
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
396-643 |
4.03e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 4.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 396 SATQQAQLLLEEKQQLEMHNHQLLESIGHLQKERDRYAEQIQVEGRVWKDKTEQLltQVALVAEERDQNISRVQELEAAI 475
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEI--DVASAEREIAELEAELERLDASS 684
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 476 TELKSAAALLSQEREAQNKAEPQSSEPSERELALEEVLNTLQQDKDAVTAQFQAQLRDNEQLSRLCAEqETRLGELERRV 555
Cdd:COG4913 685 DDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLE-ERFAAALGDAV 763
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 556 ENQVQE--EEDRRRMLEDVQSDKATISRALTQ-NRTLKDQLAELQNGFVKVTNENMELTNAIQSELHVKKE-----LARR 627
Cdd:COG4913 764 ERELREnlEERIDALRARLNRAEEELERAMRAfNREWPAETADLDADLESLPEYLALLDRLEEDGLPEYEErfkelLNEN 843
|
250 260
....*....|....*....|....
gi 1698335935 628 MGE--------LQEELHNIKEQLE 643
Cdd:COG4913 844 SIEfvadllskLRRAIREIKERID 867
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
189-638 |
4.04e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.27 E-value: 4.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 189 RELETRNQELAAALDSSNLTNSQLNTKLDQLTQQTRGLTEQLQK---------ERKEFEDKHSKEHGAMREQLQVHIQTI 259
Cdd:pfam15921 419 RELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKvssltaqleSTKEMLRKVVEELTAKKMTLESSERTV 498
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 260 gilvsekSELQTALQYTQQAARQKSAEAEELNNRLQSSKQRVSELertlssvstqqKQFEKHNKELEKERDSLRLELFRL 339
Cdd:pfam15921 499 -------SDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHL-----------KNEGDHLRNVQTECEALKLQMAEK 560
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 340 NNVSEETKQQNSELSEQIKLSNEEKGAMKFEVEDLRK-----RLELADLMLQQCSSQSDPTSATQQAQLLLEEKQQLEMH 414
Cdd:pfam15921 561 DKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKeindrRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNA 640
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 415 NHQLLESIGHLQKERDR--------------YAEQIQVEGRVWKDKTEQLLT-------QVALVAEERDQNISRVQELEA 473
Cdd:pfam15921 641 GSERLRAVKDIKQERDQllnevktsrnelnsLSEDYEVLKRNFRNKSEEMETttnklkmQLKSAQSELEQTRNTLKSMEG 720
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 474 A---------------------ITELKSAAALLsqeREAQNKAEPQSSEPSERELALEEVLNTLQQDKDAVTAQFQAQLR 532
Cdd:pfam15921 721 SdghamkvamgmqkqitakrgqIDALQSKIQFL---EEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRS 797
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 533 DNEQLSRLCAEQETRLGELERRVEN-----QVQEEEDRRRMLEDVQSDKATISRALTQNRTLKDQLaeLQNGFVKVTNEN 607
Cdd:pfam15921 798 QERRLKEKVANMEVALDKASLQFAEcqdiiQRQEQESVRLKLQHTLDVKELQGPGYTSNSSMKPRL--LQPASFTRTHSN 875
|
490 500 510
....*....|....*....|....*....|....*....
gi 1698335935 608 MELTNAIQSELH--------VKKELARRMGELQEELHNI 638
Cdd:pfam15921 876 VPSSQSTASFLShhsrktnaLKEDPTRDLKQLLQELRSV 914
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
228-955 |
6.23e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.50 E-value: 6.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 228 EQLQKERKEFEDKHSKEHGAMReqlqvhiQTIGILVSEKSELQTALQYTQQAARQKSAEAEELNNRLQSSKQRVSEL--- 304
Cdd:pfam15921 88 KDLQRRLNESNELHEKQKFYLR-------QSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAkcl 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 305 -ERTLSSVSTQQKQ---------------------FEKHNKELEKERDSLRLELFRL--NNVSEETKQQNSELS------ 354
Cdd:pfam15921 161 kEDMLEDSNTQIEQlrkmmlshegvlqeirsilvdFEEASGKKIYEHDSMSTMHFRSlgSAISKILRELDTEISylkgri 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 355 ----EQIK-LSNEEKGAMKFEVEDLRKRL---------ELADLMLQQCSSQSDPTSATQQAQLLLEEKQQlemHNHQLLE 420
Cdd:pfam15921 241 fpveDQLEaLKSESQNKIELLLQQHQDRIeqlisehevEITGLTEKASSARSQANSIQSQLEIIQEQARN---QNSMYMR 317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 421 SIGHLQKERDRYAEQIQVEGRVWKDKTEQLLTQVALVAEErdqnisrvqeleaaITELKSAAALLSQER---EAQNKAEP 497
Cdd:pfam15921 318 QLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSE--------------LTEARTERDQFSQESgnlDDQLQKLL 383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 498 QSSEPSERELALEEVLNTLQQDKDAVTAQFQAQLR-----DNEQLSRLCAEQETRLGELERRVENQVQEEEDRRRMLEDV 572
Cdd:pfam15921 384 ADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRrelddRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKV 463
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 573 QSDKATISRALTQNRTLKDQLAElqngfVKVTNENMELTNAIQSELHVKKElaRRMGELQEELHNIKEQLEVKSQESQGL 652
Cdd:pfam15921 464 SSLTAQLESTKEMLRKVVEELTA-----KKMTLESSERTVSDLTASLQEKE--RAIEATNAEITKLRSRVDLKLQELQHL 536
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 653 LAQREQLvAHLQQYSAGYQALASEREQLHHQYLQQVQLMDRL--HHDESQGRVELEishsqlnqaQEQLELLVRDNeqlK 730
Cdd:pfam15921 537 KNEGDHL-RNVQTECEALKLQMAEKDKVIEILRQQIENMTQLvgQHGRTAGAMQVE---------KAQLEKEINDR---R 603
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 731 SEVRELLNSSALASSSLDHGEGRESPQQEDSISASIIIPEDFENQKEMEQFIRGALAQVEAERDEARRQLEEEHRLHLAA 810
Cdd:pfam15921 604 LELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNF 683
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 811 RYQAAvalrlEQQHQSHKADHDQHDHAHAHDQHAHCDHDHDHSEG-------GVPVEVH------QALQVAMEKLQHRFT 877
Cdd:pfam15921 684 RNKSE-----EMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGhamkvamGMQKQITakrgqiDALQSKIQFLEEAMT 758
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1698335935 878 SLMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAIMKQKHHEKEqyinmLAQDKEEmkMKLAELQDLVMR 955
Cdd:pfam15921 759 NANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANME-----VALDKAS--LQFAECQDIIQR 829
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
268-805 |
7.04e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.52 E-value: 7.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 268 ELQTALQYTQQAARQKSAEAEELNNRLQSSKQRVSELERTLSSV--STQQKQFEKHNKELEKERDSLRLELFRLNNVSEE 345
Cdd:PTZ00121 1186 EVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVkkAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHF 1265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 346 TKQQNSELSEQIKLSNEEKGAmkfevEDLRKRLELadlmlqqcsSQSDPTSATQQAQLLLEEKQQLEMHNHQllesighl 425
Cdd:PTZ00121 1266 ARRQAAIKAEEARKADELKKA-----EEKKKADEA---------KKAEEKKKADEAKKKAEEAKKADEAKKK-------- 1323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 426 QKERDRYAEQIQVEGRVWKDKTEQLLTQVALVAEERDQNISRVQELEAAITELKSAAALLSQEREAQNKAEPQSSEPSER 505
Cdd:PTZ00121 1324 AEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED 1403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 506 ELALEEVLNTLQQDKDAVTAQFQAQLRDNEQLSRLCAEQETRLGELERRVENQVQEEEDRRRMLEDVQSD----KATISR 581
Cdd:PTZ00121 1404 KKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADeakkKAEEAK 1483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 582 ALTQNRTLKDQLAELQNGFVKVTNENMELTNAIQSELHVKKELAR-----------RMGELQEELHNIKEQLEVKSQESQ 650
Cdd:PTZ00121 1484 KADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKkaeeakkadeaKKAEEKKKADELKKAEELKKAEEK 1563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 651 GLLAQREQLVAHLQQYSAGYQALASEREQLHHQYLQQVQLMDRLHHDESQGRVELEISHSQLNQAQEQLELLVRDNEQLK 730
Cdd:PTZ00121 1564 KKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEA 1643
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1698335935 731 SEVRELLNSSALASSSLDHGEGRESPQQEDSISASIIIPEDFENQKEMEQFIRGALAQVEAErdEARRQLEEEHR 805
Cdd:PTZ00121 1644 EEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAE--ELKKKEAEEKK 1716
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
323-735 |
1.02e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.77 E-value: 1.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 323 KELEKERDSLRLELFRLNNVSEETKQQNSELSEQIKLSNEEKGAMKFEVEDLRKRLELADLMLQQCSSQSDPTSATQQAQ 402
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 403 LLLEEKQQLEMHNHQLLESIGHLQKERDRYAE------QIQVEGRVWKDKTEQLLTQVALVAEERDQN-ISRVQELEAAI 475
Cdd:COG4717 129 PLYQELEALEAELAELPERLEELEERLEELREleeeleELEAELAELQEELEELLEQLSLATEEELQDlAEELEELQQRL 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 476 TELKSAAALLSQEREAQNKAEPQSSEPSERElALEEVLNTLQQDKDAVTAQFQAQLRDNEQLSRLCAEQE---TRLGELE 552
Cdd:COG4717 209 AELEEELEEAQEELEELEEELEQLENELEAA-ALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGvlfLVLGLLA 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 553 RRVENQVQEEEDRRRMLEDVQSDKAtisRALTQNRTLKDQLAELQNGFVKVTNENMELTNAIQSelhvKKELARRMGELQ 632
Cdd:COG4717 288 LLFLLLAREKASLGKEAEELQALPA---LEELEEEELEELLAALGLPPDLSPEELLELLDRIEE----LQELLREAEELE 360
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 633 EELHNIKEQLEVKSQESQGLLAQREQLVAHLQQYSAgYQALASEREQLHHQYLQQVQLMDRLHHDESQGRVELEISHS-- 710
Cdd:COG4717 361 EELQLEELEQEIAALLAEAGVEDEEELRAALEQAEE-YQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELee 439
|
410 420
....*....|....*....|....*
gi 1698335935 711 QLNQAQEQLELLVRDNEQLKSEVRE 735
Cdd:COG4717 440 ELEELEEELEELREELAELEAELEQ 464
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
240-802 |
1.03e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 1.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 240 KHSKEHGAMREQLQVHIQTIGILVSEKSE-----LQTALQYTQQAARQKSAEAEELNNRLQSSKQRVSELERTLSSVSTQ 314
Cdd:COG4913 259 ELAERYAAARERLAELEYLRAALRLWFAQrrlelLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGD 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 315 QKQfekhnkELEKERDSLRLELFRLNNVSEETKQQNSELSEQIKLSNEEKGAMKFEVEDLRKRL--ELADLMLQQCSSQS 392
Cdd:COG4913 339 RLE------QLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALeeELEALEEALAEAEA 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 393 DPTSATQQAQLLLEEKQQLE-------MHNHQLLESI-GHLQKERDR---YAEQIQV--EGRVWKDKTEQLLTQVA---L 456
Cdd:COG4913 413 ALRDLRRELRELEAEIASLErrksnipARLLALRDALaEALGLDEAElpfVGELIEVrpEEERWRGAIERVLGGFAltlL 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 457 VAEERdqnisrVQELEAAITELKSAAALLSqEREAQNKAEPQSSEPSERELA-------------LEEVLN--------- 514
Cdd:COG4913 493 VPPEH------YAAALRWVNRLHLRGRLVY-ERVRTGLPDPERPRLDPDSLAgkldfkphpfrawLEAELGrrfdyvcvd 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 515 ---TLQQDKDAVTAQFQA-------QLRDNEQLSR----------LCAEQETRLGELERRVENQVQEEEDRRRMLEDVQS 574
Cdd:COG4913 566 speELRRHPRAITRAGQVkgngtrhEKDDRRRIRSryvlgfdnraKLAALEAELAELEEELAEAEERLEALEAELDALQE 645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 575 DKATISRALTQNRTLKDqLAELQNGFVKVTNENMELTNAiQSELhvkKELARRMGELQEELHNIKEQLEVKSQESQGLLA 654
Cdd:COG4913 646 RREALQRLAEYSWDEID-VASAEREIAELEAELERLDAS-SDDL---AALEEQLEELEAELEELEEELDELKGEIGRLEK 720
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 655 QREQLVAHLQQYSAGYQALASEREQLHHQYLQQV--QLMDRLHHDESQGRVELEISH--SQLNQAQEQLELLVRD-NEQL 729
Cdd:COG4913 721 ELEQAEEELDELQDRLEAAEDLARLELRALLEERfaAALGDAVERELRENLEERIDAlrARLNRAEEELERAMRAfNREW 800
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 730 KSEVrellnssalasssLDHGEGRESPQQEDSISASII---IPE---DFENQKE--MEQFIRGALAQVEAERDEARRQLE 801
Cdd:COG4913 801 PAET-------------ADLDADLESLPEYLALLDRLEedgLPEyeeRFKELLNenSIEFVADLLSKLRRAIREIKERID 867
|
.
gi 1698335935 802 E 802
Cdd:COG4913 868 P 868
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
264-505 |
1.60e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 1.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 264 SEKSELQTALQYTQQAARQKSAEAEELNNRLQSSKQRVSELERTLSSVSTQQKQFEKHNKELEKERDSLRLELFRLNNVS 343
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 344 EETKQQNSE-LSEQIKLSNEEKGAMKFEVEDLRKRLELADLMLQQCSSQSDPTSATQQAQLLLEE-KQQLEMHNHQLLES 421
Cdd:COG4942 100 EAQKEELAElLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAAlRAELEAERAELEAL 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 422 IGHLQKERDRYAEQiqvegrvwKDKTEQLLTQvalVAEERDQNISRVQELEAAITELKSAAALLSQEREAQNKAEPQSSE 501
Cdd:COG4942 180 LAELEEERAALEAL--------KAERQKLLAR---LEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGF 248
|
....
gi 1698335935 502 PSER 505
Cdd:COG4942 249 AALK 252
|
|
| Macoilin |
pfam09726 |
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 ... |
85-333 |
2.33e-05 |
|
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 trasnmembrane helices, followed by a C-terminal coiled-coil region. Macoilin is a highly conserved protein present in eukaryotes. Macoilin appears to be found in the ER and be involved in the function of neurons.
Pssm-ID: 462859 [Multi-domain] Cd Length: 670 Bit Score: 48.31 E-value: 2.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 85 YSNSQTLAEAATIGSSVSQMLEE------PKSEPESNPaNTNTATNPEPVSPHTEPQDYHDTNGGdnsmeenrPLSSTES 158
Cdd:pfam09726 291 HSNSKRLNISTSPGSEEDLLVREsvssksSSSSSSSNK-NYKNASGGSANSSNSSPRSHSHNSGS--------VTSSSSS 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 159 LRQLSQQLNGLVSGSSVAYV------NGDSGSSGNERELETRNQELAAALDSSNLTNSQLNTKLDQLTQQTRGLTEQLQK 232
Cdd:pfam09726 362 KNSKKQKGPGGKSGARHKDPaencipNNQLSKPDALVRLEQDIKKLKAELQASRQTEQELRSQISSLTSLERSLKSELGQ 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 233 ERKEFEDKHSKEHGAMrEQLQVHIQTIGIL-----------VSEKSELQTALQYTQQ----AARQKSAEAEELNNRLQSS 297
Cdd:pfam09726 442 LRQENDLLQTKLHNAV-SAKQKDKQTVQQLekrlkaeqearASAEKQLAEEKKRKKEeeatAARAVALAAASRGECTESL 520
|
250 260 270
....*....|....*....|....*....|....*.
gi 1698335935 298 KQRVSELERTLSSVSTQQKQFEKHNKELEKERDSLR 333
Cdd:pfam09726 521 KQRKRELESEIKKLTHDIKLKEEQIRELEIKVQELR 556
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
342-658 |
3.12e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.20 E-value: 3.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 342 VSEETKQQNSELSEQIKLSNEEKGAMKfEVEDlRKRLELADLMLQqcssqsdptSATQQAQLLLEEKQQLEMHNHQLLES 421
Cdd:pfam17380 284 VSERQQQEKFEKMEQERLRQEKEEKAR-EVER-RRKLEEAEKARQ---------AEMDRQAAIYAEQERMAMERERELER 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 422 IGhlQKERDRYAEQIQvegrvwkdkteqlltqvalvAEERDQNISRVQELEAAITELKSAAALLSQEREAQNKAEPQSSE 501
Cdd:pfam17380 353 IR--QEERKRELERIR--------------------QEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEE 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 502 pseRELALEEVLNTLQQDKDAVTAQFQAQLRDNEQlSRLCAEQETRLGELERR--VENQVQEEEDRRRMLEDVQSDKATI 579
Cdd:pfam17380 411 ---RQRKIQQQKVEMEQIRAEQEEARQREVRRLEE-ERAREMERVRLEEQERQqqVERLRQQEEERKRKKLELEKEKRDR 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 580 SRALTQNRTL--------KDQLAELQNGFVKVTNENMELTNAIQSELHVKK-ELARRMGELQEELHNIKEQLEVKSQESQ 650
Cdd:pfam17380 487 KRAEEQRRKIlekeleerKQAMIEEERKRKLLEKEMEERQKAIYEEERRREaEEERRKQQEMEERRRIQEQMRKATEERS 566
|
....*...
gi 1698335935 651 GLLAQREQ 658
Cdd:pfam17380 567 RLEAMERE 574
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
188-647 |
3.46e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 48.15 E-value: 3.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 188 ERELETRNQELAAALDSSNLTNSQLNTKLDQLTQQTRGLTEQLqKERKEFEdKHSKEHGAMREQLQVHIQTIGILVSEKS 267
Cdd:COG5022 963 ESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELS-KQYGALQ-ESTKQLKELPVEVAELQSASKIISSEST 1040
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 268 ELQTaLQYTQQAARQKSAEAEELNNRLQSSKQRVSELERTLSSVSTQQKQFekhnkELEKERDSLRLELFRLNNVSEETK 347
Cdd:COG5022 1041 ELSI-LKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTE-----NLLKTINVKDLEVTNRNLVKPANV 1114
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 348 QQNSeLSEQIKlSNEEKGAMKF------EVEDLRKRLELADLMLqQCSSQSDPTSATQQAQLLLEEKQQLEMHNHqLLES 421
Cdd:COG5022 1115 LQFI-VAQMIK-LNLLQEISKFlsqlvnTLEPVFQKLSVLQLEL-DGLFWEANLEALPSPPPFAALSEKRLYQSA-LYDE 1190
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 422 IGHLQKER--DRYAEQIQVEGRV---W--KDKTEQLLTQVALVAE--ERDQNISRVQELEAAITELKSaAALLSQEREAQ 492
Cdd:COG5022 1191 KSKLSSSEvnDLKNELIALFSKIfsgWprGDKLKKLISEGWVPTEysTSLKGFNNLNKKFDTPASMSN-EKLLSLLNSID 1269
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 493 NKAEPQSSEPSERELALEEVL--------NTLQQDKDAVTAQFQAQLRDN-EQLSRLCAEQETrlgeleRRVENQVQEEE 563
Cdd:COG5022 1270 NLLSSYKLEEEVLPATINSLLqyinvglfNALRTKASSLRWKSATEVNYNsEELDDWCREFEI------SDVDEELEELI 1343
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 564 DRRRMLEDVQSDKATISR----------ALTQNRTLKDQLAELQNGFVKVTNENMELTNAIQSELHVKKELARRMGELQE 633
Cdd:COG5022 1344 QAVKVLQLLKDDLNKLDElldacyslnpAEIQNLKSRYDPADKENNLPKEILKKIEALLIKQELQLSLEGKDETEVHLSE 1423
|
490
....*....|....
gi 1698335935 634 ELHNIKEQLEVKSQ 647
Cdd:COG5022 1424 IFSEEKSLISLDRN 1437
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
249-683 |
6.60e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 47.25 E-value: 6.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 249 REQLQVHIQTIGILVSEKSELQTALQYTQQAARQKSAEAEELNNRLQSSKQRVSELERTLSSVSTQQKQFEKhnkeleke 328
Cdd:COG3096 277 ANERRELSERALELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAASDHLNLVQTALRQQEK-------- 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 329 RDSLRLELFRLNNVSEETKQQNSELSEQIKLSNEEKGAMKFEVEDLRKrlELADLMlQQCSSQSDPTSATQQAQLLLEEK 408
Cdd:COG3096 349 IERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKS--QLADYQ-QALDVQQTRAIQYQQAVQALEKA 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 409 QQLEMHNHQLLESIghlqkerDRYAEQIQVEgrvwkdktEQLLTQVALVAEER--DQNISRVQeLEAAITELKSAAALLS 486
Cdd:COG3096 426 RALCGLPDLTPENA-------EDYLAAFRAK--------EQQATEEVLELEQKlsVADAARRQ-FEKAYELVCKIAGEVE 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 487 QEREAQNKAEPQSSEPSERELAleevlntlqqdkdAVTAQFQAQLRDNEQLSRLCAEQETRLGELERRVENQVQEEEDrr 566
Cdd:COG3096 490 RSQAWQTARELLRRYRSQQALA-------------QRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEE-- 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 567 rmLEDVQSD-KATISRALTQNRTLKDQLAELQngfvkvtnENMELTNAIQSELHvKKELARRmgELQEELHNIKEQLEVK 645
Cdd:COG3096 555 --LEELLAElEAQLEELEEQAAEAVEQRSELR--------QQLEQLRARIKELA-ARAPAWL--AAQDALERLREQSGEA 621
|
410 420 430
....*....|....*....|....*....|....*...
gi 1698335935 646 SQESQGLLAQREQLVAHLQQYSAGYQALASEREQLHHQ 683
Cdd:COG3096 622 LADSQEVTAAMQQLLEREREATVERDELAARKQALESQ 659
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
190-494 |
1.02e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.55 E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 190 ELETRNQELAAALDSSNLTNSQLNTKLDQLTQQTR---GLTEQLQKERKEFED-KHSKEHGAMRE-------------QL 252
Cdd:TIGR04523 247 EISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKkikELEKQLNQLKSEISDlNNQKEQDWNKElkselknqekkleEI 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 253 QVHI-----------QTIGILVSEKSELQTALQYTQQAARQKSAEAEELNNRLQSSKQRVSELERTLSSVSTQQKQFEKH 321
Cdd:TIGR04523 327 QNQIsqnnkiisqlnEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKL 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 322 NKELEKERDSLRLELFRLNNVSEETKQQNSELSEQIKLSNEEKGAMKFEVEDLRK-------------------RLELAD 382
Cdd:TIGR04523 407 NQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNtresletqlkvlsrsinkiKQNLEQ 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 383 LMLQQCSSQSDPTSATQQAQLLLEEKQQLEMHNHQLLESIGHLQKERDRYAEQI-QVEGRVWKDKTEQLLTQVALVAEER 461
Cdd:TIGR04523 487 KQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKIsDLEDELNKDDFELKKENLEKEIDEK 566
|
330 340 350
....*....|....*....|....*....|...
gi 1698335935 462 DQNISRVQELEAAITELKSAAALLSQEREAQNK 494
Cdd:TIGR04523 567 NKEIEELKQTQKSLKKKQEEKQELIDQKEKEKK 599
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
323-565 |
1.10e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 1.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 323 KELEKERDSLRLELFRLNNVSEETKQQNSELSEQIKLSNEEKGAMKFEVEDLRKRLELADLMLQQcssqsdptSATQQAQ 402
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAE--------LEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 403 LlleeKQQLEMHNHQLLESIGHLQkerdRYAEQIQVEGRVWKDKTEQLLTQVALVAEERDQNISRVQELEAAITELKSAA 482
Cdd:COG4942 95 L----RAELEAQKEELAELLRALY----RLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 483 ALLSQEREAQNKAEpqssepsERELALEEVLNTLQQDKDAVTAQFQAQLRDNEQLSRLCAEQETRLGELERRVENQVQEE 562
Cdd:COG4942 167 AELEAERAELEALL-------AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
...
gi 1698335935 563 EDR 565
Cdd:COG4942 240 AER 242
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
323-596 |
1.25e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 1.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 323 KELEKERDSLRLELFRLNNVSEETKQQNSELSEQIKLSN--EEKGAMKFEVEDLRKRLELADLMLQQC-SSQSDPTSATQ 399
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQERREALQrlAEYSWDEIDVASAEREIAELEAELERLdASSDDLAALEE 692
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 400 QAQLLLEEKQQLEMHNHQLLESIGHLQKERDRYAEQIQvegrvwkdkteqlLTQVALVAEERDQNISRVQELEAAITELK 479
Cdd:COG4913 693 QLEELEAELEELEEELDELKGEIGRLEKELEQAEEELD-------------ELQDRLEAAEDLARLELRALLEERFAAAL 759
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 480 SAAALLSQEREAQNKAEPQSSEPSERELALEEVLNTLQQDKDAVTAQFQAQLRDNEQLSRLCAEQETRlgELERRvenqv 559
Cdd:COG4913 760 GDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEYLALLDRLEED--GLPEY----- 832
|
250 260 270
....*....|....*....|....*....|....*...
gi 1698335935 560 qEEEDRRRMLEDVQSDKATISRALTQN-RTLKDQLAEL 596
Cdd:COG4913 833 -EERFKELLNENSIEFVADLLSKLRRAiREIKERIDPL 869
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
285-376 |
1.98e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 45.62 E-value: 1.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 285 AEAEELNNRLQSSKQRVSELERTLSSVSTQQKQFEKHNKE---LEKERDSLRLELFRLNNVSEETKQQNSELSEQIKLSN 361
Cdd:COG2433 427 AEVEELEAELEEKDERIERLERELSEARSEERREIRKDREisrLDREIERLERELEEERERIEELKRKLERLKELWKLEH 506
|
90
....*....|....*
gi 1698335935 362 EEKGAMKFEVEDLRK 376
Cdd:COG2433 507 SGELVPVKVVEKFTK 521
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
189-383 |
2.67e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 2.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 189 RELETRNQELAAALDSSNLTNSQLNTKLDQLTQQTRGLTEQLQKERKEFedkhSKEHGAMreQLQVHIQTIGILVSEKSE 268
Cdd:COG4942 58 AALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEEL----AELLRAL--YRLGRQPPLALLLSPEDF 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 269 LQTA--LQYTQQAARQKSAEAEELNNRLQSSKQRVSELERTLSSVSTQQKQFEKHNKELEKERDSLRLELFRLNNVSEET 346
Cdd:COG4942 132 LDAVrrLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAEL 211
|
170 180 190
....*....|....*....|....*....|....*..
gi 1698335935 347 KQQNSELSEQIKLSNEEKGAMKFEVEDLRKRLELADL 383
Cdd:COG4942 212 AAELAELQQEAEELEALIARLEAEAAAAAERTPAAGF 248
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
405-804 |
4.06e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.65 E-value: 4.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 405 LEEKQQLEMHN--HQLLESIGHLQKERDRYAEQiqvegrvwKDKTEQLLTQVALVAEERDQNISRVQELEAAITELKSAA 482
Cdd:PRK02224 196 IEEKEEKDLHErlNGLESELAELDEEIERYEEQ--------REQARETRDEADEVLEEHEERREELETLEAEIEDLRETI 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 483 ALLSQEREA-----QNKAEPQSSEPSERELALEEV------LNTLQQDKDAVTAQfQAQLRDNEQLSRLCA----EQETR 547
Cdd:PRK02224 268 AETEREREElaeevRDLRERLEELEEERDDLLAEAglddadAEAVEARREELEDR-DEELRDRLEECRVAAqahnEEAES 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 548 LGELERRVENQVQEEEDRRRMLE-DVQSDKATISRALTQNRTLKDQLAELQNGFVKVTNENMELTNAIQSELHVKKELAR 626
Cdd:PRK02224 347 LREDADDLEERAEELREEAAELEsELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRE 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 627 RMGELQEELHNIKEQLE-----------------VKSQESQGLLAQREQLVAHLQQYSAGYQALASEREQLHHQYLQQVQ 689
Cdd:PRK02224 427 REAELEATLRTARERVEeaealleagkcpecgqpVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVE 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 690 LMDRLhhDESQGRVE-----LEISHSQLNQAQEQLELLVRDNEQLKSEVRELLNSSALASSSLDH------------GEG 752
Cdd:PRK02224 507 AEDRI--ERLEERREdleelIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEareevaelnsklAEL 584
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 1698335935 753 RESPQQEDSISASIIIPEDFENQKEMEQFIRGALAQVE-------AERDEARRQLEEEH 804
Cdd:PRK02224 585 KERIESLERIRTLLAAIADAEDEIERLREKREALAELNderrerlAEKRERKRELEAEF 643
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
265-803 |
5.76e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.36 E-value: 5.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 265 EKSELQTALQYTQQAARQKSAEAEELNNRLQSSKQRVSELERTLSSVSTQQKQFEKHNKELEKERDSLRLELFRLNNVSE 344
Cdd:PTZ00121 1309 KKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE 1388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 345 ETKQqnselSEQIKLSNEEKgamKFEVEDLRKRlELADLMLQQCSSQSDPTSATQQAQLLLEEKQQLEMHNHqllesigh 424
Cdd:PTZ00121 1389 EKKK-----ADEAKKKAEED---KKKADELKKA-AAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKK-------- 1451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 425 lQKERDRYAEQIqvegrvwKDKTEQllTQVALVAEERDQNISRVQELEAAITELKSAAALLSQEREAQNKAEPQSSEPSE 504
Cdd:PTZ00121 1452 -KAEEAKKAEEA-------KKKAEE--AKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEA 1521
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 505 RElalEEVLNTLQQDKDAVTAQFQAQLRDNEQLSRlcaEQETRLGELERRVENQVQEEEDRRRMLEdvqsdKATISRALT 584
Cdd:PTZ00121 1522 KK---ADEAKKAEEAKKADEAKKAEEKKKADELKK---AEELKKAEEKKKAEEAKKAEEDKNMALR-----KAEEAKKAE 1590
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 585 QNRTlkdqlaelqngfvkvtnenMELTNAIQSELHVKKELARRMGELQEELHNIKEQLEVKSQESQgLLAQREQLVAHLQ 664
Cdd:PTZ00121 1591 EARI-------------------EEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQ-LKKKEAEEKKKAE 1650
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 665 QYSAGYQALASEREQLHHQYLQQVQLMDRLHHDESQGRVELEISHSQLNQAQEQLELLVRDNEqlksEVRELLNSSALAS 744
Cdd:PTZ00121 1651 ELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAE----EKKKAEELKKAEE 1726
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 1698335935 745 SSLDHGEGRESPQQEDSISASIIIPEDfENQKEMEQFIRGALAQVEAERDEARRQLEEE 803
Cdd:PTZ00121 1727 ENKIKAEEAKKEAEEDKKKAEEAKKDE-EEKKKIAHLKKEEEKKAEEIRKEKEAVIEEE 1784
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
187-734 |
6.29e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.80 E-value: 6.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 187 NERELETRNQELAAALDSSNLTNSQLNTKLDQLTQQTRGLTEQLQKERKEFEDKHSKEHG--AMREQLQVHIQTIGILVS 264
Cdd:TIGR00618 321 RSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHihTLQQQKTTLTQKLQSLCK 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 265 EKSELQtALQYTQQAarQKSAEAEELNNRLQSSKQRVSELERtlssvSTQQKQFEKHNKELEKERDSLRLELFRLNNVSE 344
Cdd:TIGR00618 401 ELDILQ-REQATIDT--RTSAFRDLQGQLAHAKKQQELQQRY-----AELCAAAITCTAQCEKLEKIHLQESAQSLKERE 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 345 ETKQQNSELSEQIKLSNEEKGAMKFEVEDLRKRLELADLMLQQCSSQSD-PTSATQQAQLLLEEKQQLEMHNHQLLESIG 423
Cdd:TIGR00618 473 QQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDnPGPLTRRMQRGEQTYAQLETSEEDVYHQLT 552
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 424 HLQKERDRYAEQIQVEgRVWKDKTEQLLTQVALVAEERDQNISRVQELEAAITELKSAAALLSQE--REAQNKAEPQSSE 501
Cdd:TIGR00618 553 SERKQRASLKEQMQEI-QQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHAllRKLQPEQDLQDVR 631
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 502 PSERELALEEVLNTLQQDKDAVTAQFQAQlrdnEQLSRLCAEQETRLGElerRVENQVQEEEDRRRMLedvQSDKATISR 581
Cdd:TIGR00618 632 LHLQQCSQELALKLTALHALQLTLTQERV----REHALSIRVLPKELLA---SRQLALQKMQSEKEQL---TYWKEMLAQ 701
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 582 ALTQNRTLKDQLAELQNGFvkvtNENMELTNAIQSELHVKKELARRMgeLQEELHNIKEQLEVKSQESQGLLAQREQLVA 661
Cdd:TIGR00618 702 CQTLLRELETHIEEYDREF----NEIENASSSLGSDLAAREDALNQS--LKELMHQARTVLKARTEAHFNNNEEVTAALQ 775
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1698335935 662 HLQQYSAGYQALASEREQLHHQYLQQVQLMDRLHHDESQGRVELEISHSQLNQAQEQLELLVRDNEQLKSEVR 734
Cdd:TIGR00618 776 TGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEIT 848
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
202-734 |
6.79e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.86 E-value: 6.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 202 LDSSNLTNSQLNTKLDQLTQQTRGLTEQLQKERKEFEDKHSKEhgAMREQ----LQVHIQTIGILVSEKSELQTALQYTQ 277
Cdd:TIGR04523 154 LEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKL--LKLELllsnLKKKIQKNKSLESQISELKKQNNQLK 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 278 QAARQKSAEAEELNNRLQSSKQRV----SELERTLSSVSTQQKQFEKHNK---ELEKERDSLRLELFRLNNVSEEtkQQN 350
Cdd:TIGR04523 232 DNIEKKQQEINEKTTEISNTQTQLnqlkDEQNKIKKQLSEKQKELEQNNKkikELEKQLNQLKSEISDLNNQKEQ--DWN 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 351 SELSEQIKlsNEEKgamkfevedlrkrlELADLMLQQCSSQSDPTSATQQAQLLLEEKQQLEMHNHQLLESIghlqKERD 430
Cdd:TIGR04523 310 KELKSELK--NQEK--------------KLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQREL----EEKQ 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 431 RYAEQIQVEGRVWKDKTEQLLTQVALVAEERDQNISRVQELEAAITELKSAAALLSQE----REAQNKAEPQSSEPSERE 506
Cdd:TIGR04523 370 NEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEierlKETIIKNNSEIKDLTNQD 449
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 507 LALEEVLNTLQQDKDavtaqfqaqlrdneqlsrlcaEQETRLGELERRVENQVQEEEDRRRMLEDVQSdkatisraltQN 586
Cdd:TIGR04523 450 SVKELIIKNLDNTRE---------------------SLETQLKVLSRSINKIKQNLEQKQKELKSKEK----------EL 498
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 587 RTLKDQLAELQNGFVKVTNENMELTNAIQSELHVKKELARRMGELQEELHNIKEQLEVKSQESQGLLAQREqlvahLQQY 666
Cdd:TIGR04523 499 KKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKE-----IEEL 573
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1698335935 667 SAGYQALASEREQLHhqylqqvQLMDRLHHDESQGRVELEISHSQLNQAQEQLELLVRDNEQLKSEVR 734
Cdd:TIGR04523 574 KQTQKSLKKKQEEKQ-------ELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIK 634
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
209-328 |
7.58e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.79 E-value: 7.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 209 NSQLNTKLDQLTQQTRGLTEQLQKERKEFeDKHSKEHGAMREQLQVHIQTIGILVSEKSELqtALQYTQQAARQKSAEAE 288
Cdd:PRK04863 987 NEKLRQRLEQAEQERTRAREQLRQAQAQL-AQYNQVLASLKSSYDAKRQMLQELKQELQDL--GVPADSGAEERARARRD 1063
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1698335935 289 ELNNRLQSSKQRVSELERTLSSVSTQQKQFEKHNKELEKE 328
Cdd:PRK04863 1064 ELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERD 1103
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
464-894 |
8.45e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 8.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 464 NISRVQELEAAITELKSAAALLSQEREAQNKAEPQSSEPSERELALEEVLNTLQQDKdavtaQFQAQLRDNEQLSRLCAE 543
Cdd:COG4717 69 NLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLL-----QLLPLYQELEALEAELAE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 544 QETRLGELERRVENQVQEEEDRRRmledvqsdkatisraltqnrtLKDQLAELQNgfvKVTNENMELTNAIQSELhvkKE 623
Cdd:COG4717 144 LPERLEELEERLEELRELEEELEE---------------------LEAELAELQE---ELEELLEQLSLATEEEL---QD 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 624 LARRMGELQEELHNIKEQLEVKSQESQGLLAQREQLVAHLQQysagyQALASEREQLHHQYLQQVQLMDRLHHDESQGRV 703
Cdd:COG4717 197 LAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEA-----AALEERLKEARLLLLIAAALLALLGLGGSLLSL 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 704 ELEISHSQLNQAQEQLELLVRDNEQLKSEVRELLNSSALASSSLDHGEGRESPQQEDSISASIIIPEDFENQKEMEQfIR 783
Cdd:COG4717 272 ILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEE-LQ 350
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 784 GALAQVEAERDEARRQLEEEHRLHLAARYQA------AVALRLEQQHQSHKADHDQHDHAHAHDQHAHCDHDHDHSEGGV 857
Cdd:COG4717 351 ELLREAEELEEELQLEELEQEIAALLAEAGVedeeelRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEEL 430
|
410 420 430
....*....|....*....|....*....|....*..
gi 1698335935 858 PVEVHQaLQVAMEKLQHRFTSLMQEKADLKERVEELE 894
Cdd:COG4717 431 EEELEE-LEEELEELEEELEELREELAELEAELEQLE 466
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
445-680 |
8.61e-04 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 43.13 E-value: 8.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 445 DKTEQLLTQVALVAEERDQNISRVQELEAAITELKSAAALLSQEREAQNKAEPQSSEPSERELALEEVLNTLQQDKDAVT 524
Cdd:pfam19220 17 DRLEDLRSLKADFSQLIEPIEAILRELPQAKSRLLELEALLAQERAAYGKLRRELAGLTRRLSAAEGELEELVARLAKLE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 525 AQFQAQLRDNEQLSRLCAEQETRLGELERRVENQVQE----EEDRRRMLEDVQSDKATISRALTQNRTLKDQLAELqngf 600
Cdd:pfam19220 97 AALREAEAAKEELRIELRDKTAQAEALERQLAAETEQnralEEENKALREEAQAAEKALQRAEGELATARERLALL---- 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 601 vkvTNENMELTNAIQSELHVKKELARRMGELQEELHNIKEQLEVKSQESQGLLAQREQLVAhlqQYSAGYQALASEREQL 680
Cdd:pfam19220 173 ---EQENRRLQALSEEQAAELAELTRRLAELETQLDATRARLRALEGQLAAEQAERERAEA---QLEEAVEAHRAERASL 246
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
188-657 |
8.61e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.50 E-value: 8.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 188 ERELETRNQELAAALDSSNLTNSQLNTKLDQLTQQTRGLTE---------QLQKERKEFEdKHSKEHGAMREQLQVHIQT 258
Cdd:TIGR00606 590 RDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDvcgsqdeesDLERLKEEIE-KSSKQRAMLAGATAVYSQF 668
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 259 IGILVSEKSELQTALQYTQQAarqkSAEAEELnnrlqsskqrVSELERTLSSVSTQQKQFEKHNKELEKERDSLRLEL-- 336
Cdd:TIGR00606 669 ITQLTDENQSCCPVCQRVFQT----EAELQEF----------ISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLApg 734
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 337 ----------------FRLNNVSEETKQQNSELSEQIKL----SNEEKGAMKFE-----VEDLRKRLELADLMLQQCSSQ 391
Cdd:TIGR00606 735 rqsiidlkekeipelrNKLQKVNRDIQRLKNDIEEQETLlgtiMPEEESAKVCLtdvtiMERFQMELKDVERKIAQQAAK 814
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 392 SDPTSATQQAQLLLEEKQQLEMHNHQLLESIGHLQKERDRYAEQIQ-VEGRVWKDKTEQL-----LTQVALVAEERDQNI 465
Cdd:TIGR00606 815 LQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQhLKSKTNELKSEKLqigtnLQRRQQFEEQLVELS 894
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 466 SRVQELEAAITELKSAAALLSQ--EREAQNKAEPQSSEPSERELALEEVLNTLQQDKDAVTAQFQAQLRDNEQLSRLCAE 543
Cdd:TIGR00606 895 TEVQSLIREIKDAKEQDSPLETflEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQ 974
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 544 QETRLGELERRVEnqvQEEEDRRRMLEDVQSDKATISRALTQNRTLKDQLAELqngfvKVTNENMELTNAIQSelHVKKE 623
Cdd:TIGR00606 975 KETELNTVNAQLE---ECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLR-----KRENELKEVEEELKQ--HLKEM 1044
|
490 500 510
....*....|....*....|....*....|....*
gi 1698335935 624 LARRMGELQEELHNIKEQLE-VKSQESQGLLAQRE 657
Cdd:TIGR00606 1045 GQMQVLQMKQEHQKLEENIDlIKRNHVLALGRQKG 1079
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
218-336 |
1.19e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.02 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 218 QLTQQTRGLTEQLQKERKEFEDKHSKEHGAMREQLQVHIQTIGILVSEKSELQTALQYTQQAAR-------QKSAEAE-- 288
Cdd:COG3096 977 GLLGENSDLNEKLRARLEQAEEARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQeleelgvQADAEAEer 1056
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1698335935 289 ------ELNNRLQSSKQRVSELERTLSSVSTQQKQFEKHNKELEKERDSLRLEL 336
Cdd:COG3096 1057 arirrdELHEELSQNRSRRSQLEKQLTRCEAEMDSLQKRLRKAERDYKQEREQV 1110
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
295-496 |
1.25e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 1.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 295 QSSKQRVSELERTLSSVSTQQKQFEKHNKELEKerdslRLELFRLNNVSEETKQQNSELSEQIKLSNEEKGAMKFEVEDL 374
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEAEA-----ALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEA 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 375 RKRLELADLMLQQCSSQSDPTSATQQAQLLLEEKQQLEMHNHQLLESIGH-------LQKERDRYAEQIQVEGRvwkdkt 447
Cdd:COG3206 239 EARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPnhpdviaLRAQIAALRAQLQQEAQ------ 312
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1698335935 448 eqllTQVALVAEERDQNISRVQELEAAITELKSAAALLSQ--------EREAQNKAE 496
Cdd:COG3206 313 ----RILASLEAELEALQAREASLQAQLAQLEARLAELPEleaelrrlEREVEVARE 365
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
459-801 |
1.30e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.13 E-value: 1.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 459 EERDQNISRVQELEAAITELKSAAALLSQEREAQNKAEPQSSEPSEREL-ALEEVLNTLQQDKDAVTAQFQAQLRDNEQL 537
Cdd:TIGR02169 177 EELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGyELLKEKEALERQKEAIERQLASLEEELEKL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 538 SRLCAEQETRLGELERRVEnqvQEEEDRRRMLEDVQsdkatisraltqnRTLKDQLAElqngfvkVTNENMELTNAIQSE 617
Cdd:TIGR02169 257 TEEISELEKRLEEIEQLLE---ELNKKIKDLGEEEQ-------------LRVKEKIGE-------LEAEIASLERSIAEK 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 618 LHVKKELARRMGELQEELHNIKEQLEVKSQESQGLLAQREQLVAHLQQYSAGYQALASEREQLHhqylqqvqlmdrlhhd 697
Cdd:TIGR02169 314 ERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVD---------------- 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 698 esqgrVELEISHSQLNQAQEQLELLVRDNEQLKSEVRELLNSSALAsssldHGEGRESPQQEDSISASI--IIPEDFENQ 775
Cdd:TIGR02169 378 -----KEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRL-----SEELADLNAAIAGIEAKIneLEEEKEDKA 447
|
330 340
....*....|....*....|....*.
gi 1698335935 776 KEMEQfIRGALAQVEAERDEARRQLE 801
Cdd:TIGR02169 448 LEIKK-QEWKLEQLAADLSKYEQELY 472
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
402-681 |
1.34e-03 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 42.75 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 402 QLLLEEKQQLEmhnhqLLESIGHLQKERDRYAEQIQVegrvWKDKTEQLLtqvALVAEERDQNiSRVQELEAAITELKSA 481
Cdd:COG0497 135 QSLLDPDAQRE-----LLDAFAGLEELLEEYREAYRA----WRALKKELE---ELRADEAERA-RELDLLRFQLEELEAA 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 482 A------ALLSQEREAQNKAEpqssepsERELALEEVLNTLQQDKDAVTAQFQAQLRDNEQLSRLcaeqETRLGELERRV 555
Cdd:COG0497 202 AlqpgeeEELEEERRRLSNAE-------KLREALQEALEALSGGEGGALDLLGQALRALERLAEY----DPSLAELAERL 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 556 EN---QVQE-EEDRRRMLEDVQSDKAtisraltqnrtlkdQLAELQngfvkvtnenmeltnAIQSELHvkkELARRMGEL 631
Cdd:COG0497 271 ESaliELEEaASELRRYLDSLEFDPE--------------RLEEVE---------------ERLALLR---RLARKYGVT 318
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1698335935 632 QEELHNIKEQLEVKSQESQGLLAQREQLVAHLQQYSAGYQALAserEQLH 681
Cdd:COG0497 319 VEELLAYAEELRAELAELENSDERLEELEAELAEAEAELLEAA---EKLS 365
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
223-664 |
1.78e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.47 E-value: 1.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 223 TRGLTEQLQKER--KEFEDKHSKEHGAMREQLQVHIQtigiLVSEKSELQTALQytqqAARQKSAEAEELNNRLQSSKQ- 299
Cdd:pfam01576 1 TRQEEEMQAKEEelQKVKERQQKAESELKELEKKHQQ----LCEEKNALQEQLQ----AETELCAEAEEMRARLAARKQe 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 300 ----------RVSELERTLSSVSTQQKQFEKHNKELEK---ERDSLRLELfRLNNVSEETKQQNSE-----LSEQIKLSN 361
Cdd:pfam01576 73 leeilhelesRLEEEEERSQQLQNEKKKMQQHIQDLEEqldEEEAARQKL-QLEKVTTEAKIKKLEedillLEDQNSKLS 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 362 EEKGAMKFEVEDLRKRL---ELADLMLQQCSSQSDPTSATQQAQLLLEEK--QQLEMHNHQLLESIGHLQKERDRYAEQI 436
Cdd:pfam01576 152 KERKLLEERISEFTSNLaeeEEKAKSLSKLKNKHEAMISDLEERLKKEEKgrQELEKAKRKLEGESTDLQEQIAELQAQI 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 437 QVEGRVWKDKTEQLLTQVALVAEE---RDQNISRVQELEAAITELKSAaalLSQEREAQNKAEPQSSEPSERelaLEEVL 513
Cdd:pfam01576 232 AELRAQLAKKEEELQAALARLEEEtaqKNNALKKIRELEAQISELQED---LESERAARNKAEKQRRDLGEE---LEALK 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 514 NTLQQDKDAVTAQFQAQLRDNEQLSRL--CAEQETRLGELE----RRVENQVQEE-----EDRRRMLEDVQSDKATI--- 579
Cdd:pfam01576 306 TELEDTLDTTAAQQELRSKREQEVTELkkALEEETRSHEAQlqemRQKHTQALEElteqlEQAKRNKANLEKAKQALese 385
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 580 -SRALTQNRTLKDQLAELQNGFVKVTNENMELTNAIQSELHVKKELARRMGELQEELHNIKEQLEVKSQESQGLLAQREQ 658
Cdd:pfam01576 386 nAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSS 465
|
....*.
gi 1698335935 659 LVAHLQ 664
Cdd:pfam01576 466 LESQLQ 471
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
274-664 |
1.78e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 42.58 E-value: 1.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 274 QYTQQAARQKSAEAEELNNRLQSSKQRVSELERTLSSVSTQQKQFEKHNkelEKERDSLRLELFRLNNVSEETKQQNSEL 353
Cdd:PLN02939 45 QQKKKRGKNIAPKQRSSNSKLQSNTDENGQLENTSLRTVMELPQKSTSS---DDDHNRASMQRDEAIAAIDNEQQTNSKD 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 354 SEQIKlsneekgamKFEVEDLRKRLELAD---LMLQQCSSQsdptsATQQAQLLLEEKQQLEmHNHQLLESIGHLQKERD 430
Cdd:PLN02939 122 GEQLS---------DFQLEDLVGMIQNAEkniLLLNQARLQ-----ALEDLEKILTEKEALQ-GKINILEMRLSETDARI 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 431 RYAEQIQVEGRVWKDKTEQLLTQVAL-VAEERDQNISRVQELEAaiteLKSAAALLSQEREAQNKAEPQSSEPSERELAL 509
Cdd:PLN02939 187 KLAAQEKIHVEILEEQLEKLRNELLIrGATEGLCVHSLSKELDV----LKEENMLLKDDIQFLKAELIEVAETEERVFKL 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 510 EEVLNTLQqdkdavtaqfqAQLRDNEqlSRLCAEQETRLGELERRVENQVQEEEDRRRMLEDV--QSDKATIsrALTQNR 587
Cdd:PLN02939 263 EKERSLLD-----------ASLRELE--SKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRAtnQVEKAAL--VLDQNQ 327
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1698335935 588 TLKDQLAELQngfvkvtnENMELTNaiqselhVKKELARRMGELQEELHNIKEQLEVKSQESQGLLAQREQLVAHLQ 664
Cdd:PLN02939 328 DLRDKVDKLE--------ASLKEAN-------VSKFSSYKVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQ 389
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
344-582 |
1.80e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 1.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 344 EETKQQNSELSEQIKLSNEEKGAMKFEVEDLRKRLELADLMLQQCSSQSDptSATQQAQLLLEEKQQLEMHNHQLLESig 423
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIR--ALEQELAALEAELAELEKEIAELRAE-- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 424 hLQKERDRYAEQIQVEGRVWKDKTEQLLtqvaLVAEERDQNISRVQELEAAITELKSAAALLSQEREAQNkaepqsseps 503
Cdd:COG4942 99 -LEAQKEELAELLRALYRLGRQPPLALL----LSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELA---------- 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1698335935 504 ERELALEEVLNTLQQDKDAVTAQFQAQLRDNEQLSRLCAEQETRLGELERRVENQVQEEEDRRRMLEDVQSDKATISRA 582
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
298-802 |
1.83e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.36 E-value: 1.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 298 KQRVSELERTLSSVSTQQKQFEKHNKELEKERDSLRLELFRLnnvsEETKQQNSELSEQIKLSNEEKGAMKFEVEDLRKR 377
Cdd:PRK03918 192 EELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEL----EELKEEIEELEKELESLEGSKRKLEEKIRELEER 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 378 LELADLMLQQCSSQsdpTSATQQAQLLLEEKQQLEMHNHQLLESIGHLQKERDRYAEQIQVEGRVWKDkTEQLLTQVALV 457
Cdd:PRK03918 268 IEELKKEIEELEEK---VKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKE-LEEKEERLEEL 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 458 AEERDQNISRVQELEAAITELKSAAALLSQEREAQNKAEPQSSEPSEREL-ALEEVLNTLQQDKDAVTAQfQAQLRdNEQ 536
Cdd:PRK03918 344 KKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELeELEKAKEEIEEEISKITAR-IGELK-KEI 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 537 LSRLCAEQETRLGELERRVENQVQEEEDRRRMLEDVqsdKATISRALTQNRTLKDQLAELQNGFVKVtnenmELTNAIQS 616
Cdd:PRK03918 422 KELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEY---TAELKRIEKELKEIEEKERKLRKELREL-----EKVLKKES 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 617 ELHVKKELARRMGELQEELHNI-KEQLEVKSQESQGLLAQREQLVAHLQqysagyqALASEREQLHHQYLQQVQLMDRLH 695
Cdd:PRK03918 494 ELIKLKELAEQLKELEEKLKKYnLEELEKKAEEYEKLKEKLIKLKGEIK-------SLKKELEKLEELKKKLAELEKKLD 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 696 HDESQgRVELEishsqlnqaQEQLELLVRDNEQLKSEVRELLNSSalasssldhgegRESPQQEDSISASIIIPEDFENQ 775
Cdd:PRK03918 567 ELEEE-LAELL---------KELEELGFESVEELEERLKELEPFY------------NEYLELKDAEKELEREEKELKKL 624
|
490 500
....*....|....*....|....*..
gi 1698335935 776 KEMEQFIRGALAQVEAERDEARRQLEE 802
Cdd:PRK03918 625 EEELDKAFEELAETEKRLEELRKELEE 651
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
392-659 |
1.90e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 1.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 392 SDPTSATQQAQLLLEE--KQQLEMHNHQLLESIGHLQKERDRYAEQI-QVEGRVWKDKTEQLLTQVAlvaEERDQNISRV 468
Cdd:COG3206 145 PDPELAAAVANALAEAylEQNLELRREEARKALEFLEEQLPELRKELeEAEAALEEFRQKNGLVDLS---EEAKLLLQQL 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 469 QELEAAITELKSaaallsQEREAQNKAEPQSSEPSERELALEEVLNtlqqdkDAVTAQFQAQLRdneQLSRLCAEQETRL 548
Cdd:COG3206 222 SELESQLAEARA------ELAEAEARLAALRAQLGSGPDALPELLQ------SPVIQQLRAQLA---ELEAELAELSARY 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 549 GELERRVENQVQEEEDRRRMLEdvQSDKATISRALTQNRTLKDQLAELQNgfvkvtnenmeltnaiqsELHVKKELARRM 628
Cdd:COG3206 287 TPNHPDVIALRAQIAALRAQLQ--QEAQRILASLEAELEALQAREASLQA------------------QLAQLEARLAEL 346
|
250 260 270
....*....|....*....|....*....|.
gi 1698335935 629 GELQEELHNIKEQLEVKSQESQGLLAQREQL 659
Cdd:COG3206 347 PELEAELRRLEREVEVARELYESLLQRLEEA 377
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
211-735 |
1.92e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.63 E-value: 1.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 211 QLNTKLDQLTQQTRGLTEQL---QKERKEFED------------KHSKEHGAMREQLQVHIQtigilvsekselQTALQY 275
Cdd:COG3096 445 AFRAKEQQATEEVLELEQKLsvaDAARRQFEKayelvckiagevERSQAWQTARELLRRYRS------------QQALAQ 512
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 276 TQQAARQKSAEAEELNNRLQSSKQRVSELERTLSSVSTQQKQFEKHNKELEKERDSLRLELFRLNNVSEETKQQNSELSE 355
Cdd:COG3096 513 RLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRA 592
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 356 QIKlsneekgamkfeveDLRKR----LELADlMLQQCSSQS-----DPTSATQQAQLLLEEKQQLEMHNHQLLESIGHLQ 426
Cdd:COG3096 593 RIK--------------ELAARapawLAAQD-ALERLREQSgealaDSQEVTAAMQQLLEREREATVERDELAARKQALE 657
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 427 KErdryAEQIQVEGRVWKDKTEQLLTQVA--LVAEERD-----------------------QNISRVQELEAAITELKSA 481
Cdd:COG3096 658 SQ----IERLSQPGGAEDPRLLALAERLGgvLLSEIYDdvtledapyfsalygparhaivvPDLSAVKEQLAGLEDCPED 733
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 482 AALLSQEREAQNKAEPQSSE--------PSEREL--------------ALEEVLNTLQQDKDAVTAQFQAQLRDNEQLSR 539
Cdd:COG3096 734 LYLIEGDPDSFDDSVFDAEEledavvvkLSDRQWrysrfpevplfgraAREKRLEELRAERDELAEQYAKASFDVQKLQR 813
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 540 LCAEQETRLGElerrvENQVQEEEDRRRMLEDVQSDKATISRALTQNRtlkDQLAELQNGFVKVTnENMELTNAIQSELH 619
Cdd:COG3096 814 LHQAFSQFVGG-----HLAVAFAPDPEAELAALRQRRSELERELAQHR---AQEQQLRQQLDQLK-EQLQLLNKLLPQAN 884
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 620 VKKE--LARRMGELQEELHNIKE-QLEVKSQESQglLAQREQLVAHLQQYSAGYQALASEREQLHHQyLQQVQ------- 689
Cdd:COG3096 885 LLADetLADRLEELREELDAAQEaQAFIQQHGKA--LAQLEPLVAVLQSDPEQFEQLQADYLQAKEQ-QRRLKqqifals 961
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 1698335935 690 -LMDRLHHDESQGRVELEISHSQLNqaqEQLELLVRDNEQLKSEVRE 735
Cdd:COG3096 962 eVVQRRPHFSYEDAVGLLGENSDLN---EKLRARLEQAEEARREARE 1005
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
204-436 |
1.94e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 42.35 E-value: 1.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 204 SSNLTNSQLNTKLDQLTQQTRGLTEQLQKER---KEFEDKHSK---EHGAMREQLQVHIQTIGILVSEkselQTALQYTQ 277
Cdd:PRK10929 99 PPNMSTDALEQEILQVSSQLLEKSRQAQQEQdraREISDSLSQlpqQQTEARRQLNEIERRLQTLGTP----NTPLAQAQ 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 278 QAARQKSAEAEelnnrlqssKQRVSELERTLSSVSTQQKQFEKHNKELEKERDSLRLELFRLNNVSEETKQQNSELS-EQ 356
Cdd:PRK10929 175 LTALQAESAAL---------KALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERAlES 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 357 IKLSNEEKGAM-KFEVEDLRKRLELADLMLQQC-------SSQSDPTSATQQAQLLL----EEKQQL------------- 411
Cdd:PRK10929 246 TELLAEQSGDLpKSIVAQFKINRELSQALNQQAqrmdliaSQQRQAASQTLQVRQALntlrEQSQWLgvsnalgealraq 325
|
250 260 270
....*....|....*....|....*....|.
gi 1698335935 412 -----EMHNHQLLES-IGHLQKERDRYAEQI 436
Cdd:PRK10929 326 varlpEMPKPQQLDTeMAQLRVQRLRYEDLL 356
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
196-418 |
2.12e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.21 E-value: 2.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 196 QELAAALDSSNLTNSQLNTKLDQLTQQTRGLTEQLQKERKEFEDKHSKEHGAMR-EQLQvhiqtigilvSEKSELQTALQ 274
Cdd:PRK11281 69 LALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSlRQLE----------SRLAQTLDQLQ 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 275 YTQQAARQKSAEAEELNNR-------LQSSKQRVSELERTLSSVSTQQKQFEkhnkelEKERDSLRLELFRLNNVSEETK 347
Cdd:PRK11281 139 NAQNDLAEYNSQLVSLQTQperaqaaLYANSQRLQQIRNLLKGGKVGGKALR------PSQRVLLQAEQALLNAQNDLQR 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 348 QQ---NSEL----SEQIKLSNEEKGAMKFEVEDL-----RKRLELADLMLQQCSSQsDPTSATQQAQLLleeKQQLEmHN 415
Cdd:PRK11281 213 KSlegNTQLqdllQKQRDYLTARIQRLEHQLQLLqeainSKRLTLSEKTVQEAQSQ-DEAARIQANPLV---AQELE-IN 287
|
...
gi 1698335935 416 HQL 418
Cdd:PRK11281 288 LQL 290
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
198-412 |
2.20e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 2.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 198 LAAALDSSNLTNSQLNTKLDQLTQQTRGLTEQLQKERKEfedkhskeHGAMREQLQVHIQTIGILVSEKSELQTALQYTQ 277
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKE--------EKALLKQLAALERRIAALARRIRALEQELAALE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 278 QAARQKSAEAEELNNRLQSSKQRVSELERTLSSVSTQ------------------QKQFEKHNKELEKERDSLRLELFRL 339
Cdd:COG4942 83 AELAELEKEIAELRAELEAQKEELAELLRALYRLGRQpplalllspedfldavrrLQYLKYLAPARREQAEELRADLAEL 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1698335935 340 NNVSEETKQQNSELSEQIKLSNEEKGAMKFEVEDLRKRLEladlmlqqcSSQSDPTSATQQAQLLLEEKQQLE 412
Cdd:COG4942 163 AALRAELEAERAELEALLAELEEERAALEALKAERQKLLA---------RLEKELAELAAELAELQQEAEELE 226
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
457-680 |
2.26e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.93 E-value: 2.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 457 VAEERDQNISRVQELEAAITELKsaAALLSQEREAQN-KAEPQSSEPSERELALEEVLNTLQQDKDAVtaqfQAQLRDNE 535
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELR--KELEEAEAALEEfRQKNGLVDLSEEAKLLLQQLSELESQLAEA----RAELAEAE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 536 QLSRLCAEQETRLGELERRVENQVQEEEDRRRmLEDVQSDKATISRALTQN----RTLKDQLAELQNgfvKVTNENMELT 611
Cdd:COG3206 240 ARLAALRAQLGSGPDALPELLQSPVIQQLRAQ-LAELEAELAELSARYTPNhpdvIALRAQIAALRA---QLQQEAQRIL 315
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1698335935 612 NAIQSELhvkKELARRMGELQEELhnikEQLEVKSQESQGLLAQREQLVAHLQQYSAGYQALASEREQL 680
Cdd:COG3206 316 ASLEAEL---EALQAREASLQAQL----AQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEA 377
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
266-519 |
2.27e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.21 E-value: 2.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 266 KSELQTALQYTQQAARQKSaEAEELNNRLQSSKQRVSELERTLSS-----VSTQQKQFEK-HNKELEKERDSLRLElfrL 339
Cdd:PRK11281 62 QQDLEQTLALLDKIDRQKE-ETEQLKQQLAQAPAKLRQAQAELEAlkddnDEETRETLSTlSLRQLESRLAQTLDQ---L 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 340 NNVSEETKQQNSELSEQIKLSNEEKGAMKFEVedlrKRLELADLMLQQCSSQSDPTSATQQAQLLLE--------EKQQL 411
Cdd:PRK11281 138 QNAQNDLAEYNSQLVSLQTQPERAQAALYANS----QRLQQIRNLLKGGKVGGKALRPSQRVLLQAEqallnaqnDLQRK 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 412 EMHNHQLLESIGhlQKERDRYAEQIQVegrvwKDKTEQLLtQVALVAEERDQNISRVQELEAAITELKSAA-ALLSQERE 490
Cdd:PRK11281 214 SLEGNTQLQDLL--QKQRDYLTARIQR-----LEHQLQLL-QEAINSKRLTLSEKTVQEAQSQDEAARIQAnPLVAQELE 285
|
250 260
....*....|....*....|....*....
gi 1698335935 491 AqNKaepqssEPSERELALEEVLNTLQQD 519
Cdd:PRK11281 286 I-NL------QLSQRLLKATEKLNTLTQQ 307
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
188-646 |
2.97e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 41.75 E-value: 2.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 188 ERELETRNQELAAALDSSNLTnSQLNTKLDQLTQQTRGLTEQLQKERKEFEDKHSKEHGA--MREQLQVHIQTIGILVSE 265
Cdd:pfam12128 439 EYRLKSRLGELKLRLNQATAT-PELLLQLENFDERIERAREEQEAANAEVERLQSELRQArkRRDQASEALRQASRRLEE 517
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 266 kseLQTALQYTQQAARQKSAEAEE-LNNRLQSSKQRVSEL----------------------ERTLSSVSTQQKQFE--- 319
Cdd:pfam12128 518 ---RQSALDELELQLFPQAGTLLHfLRKEAPDWEQSIGKVispellhrtdldpevwdgsvggELNLYGVKLDLKRIDvpe 594
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 320 --KHNKELEKERDSLRLELfrlnnVSEETKQQnsELSEQIKLSNEEKGAMKFEVEDLRKRLELADLMLQQCSSQSDpTSA 397
Cdd:pfam12128 595 waASEEELRERLDKAEEAL-----QSAREKQA--AAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQ-SEK 666
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 398 TQQAQLLLEEKQQLEMHNHQLLESIGHLQKERDRYAEQIQVEGRvwKDKTEQLLTQVALVAEERDQNISRVQELEAAITE 477
Cdd:pfam12128 667 DKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKR--EARTEKQAYWQVVEGALDAQLALLKAAIAARRSG 744
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 478 LKSAAALLSQEREAQNKA---EPQSSEPSERELA-LEEVLNTLQQDKDAVTAQFQAQ----LRDNEQLSRLCAEQETRLG 549
Cdd:pfam12128 745 AKAELKALETWYKRDLASlgvDPDVIAKLKREIRtLERKIERIAVRRQEVLRYFDWYqetwLQRRPRLATQLSNIERAIS 824
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 550 ELERRVENQVQEEEDRRRMLE-DVQSDKATISRALTQNRTLKDQLAELQNGFVKVTNENMEL----TNAIQSELhvKKEL 624
Cdd:pfam12128 825 ELQQQLARLIADTKLRRAKLEmERKASEKQQVRLSENLRGLRCEMSKLATLKEDANSEQAQGsigeRLAQLEDL--KLKR 902
|
490 500
....*....|....*....|..
gi 1698335935 625 ARRMGELQEELHNIKEQLEVKS 646
Cdd:pfam12128 903 DYLSESVKKYVEHFKNVIADHS 924
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
189-556 |
3.42e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 3.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 189 RELETRNQELAaaldssnltnsqlntkldQLTQQTRGLTEQLQKERKEFEDKHSKEHGAMREQLQVHIQTIGILVSEKSE 268
Cdd:COG4717 149 EELEERLEELR------------------ELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAE 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 269 LQTALQYTQQAARQKSAEAEELNNRLQSSK--QRVSELERTLSSVSTQQkqfekhnkELEKERDSLRLELFRLNNVS--- 343
Cdd:COG4717 211 LEEELEEAQEELEELEEELEQLENELEAAAleERLKEARLLLLIAAALL--------ALLGLGGSLLSLILTIAGVLflv 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 344 ------EETKQQNSELSEQIKLSNEEKGAMKFEVEDLRKRLELADLMLQQCSSQSDPTSATQQAQLLLEEKQQLEMHNHQ 417
Cdd:COG4717 283 lgllalLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEE 362
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 418 LLesIGHLQKERDRYAEQIQVEgrvwkdkTEQLLTQVALVAEERDQNISRVQELEAAITE-LKSAAALLSQEREAQNKAE 496
Cdd:COG4717 363 LQ--LEELEQEIAALLAEAGVE-------DEEELRAALEQAEEYQELKEELEELEEQLEElLGELEELLEALDEEELEEE 433
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 497 PQSSEpsERELALEEVLNTLQQDKDAVTAQFQaQLRDNEQLSRLCAEQETRLGELERRVE 556
Cdd:COG4717 434 LEELE--EELEELEEELEELREELAELEAELE-QLEEDGELAELLQELEELKAELRELAE 490
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
471-689 |
3.49e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 3.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 471 LEAAITELKSAAALLSQE-REAQNKAEpqssepserelALEEVLNTLQQDKDAVTAQFQAQLRDNE--QLSRLCAEQETR 547
Cdd:COG3206 166 LELRREEARKALEFLEEQlPELRKELE-----------EAEAALEEFRQKNGLVDLSEEAKLLLQQlsELESQLAEARAE 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 548 LGELERRVeNQVQEEEDRRRMLEDVQSDKATISRALTQNRTLKDQLAELQNGFvkvTNENMELTnAIQSELH-VKKELAR 626
Cdd:COG3206 235 LAEAEARL-AALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARY---TPNHPDVI-ALRAQIAaLRAQLQQ 309
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1698335935 627 RMGELQEELHNIKEQLEVKSQESQGLLAQREQLVAHLQQYSAGYQALASERE---QLHHQYLQQVQ 689
Cdd:COG3206 310 EAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEvarELYESLLQRLE 375
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
276-730 |
3.89e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 41.25 E-value: 3.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 276 TQQAARQKSAEAEELNNRLQSSKQRVSELERTLSSVSTQQKQFEKHNKELEKERDSLRlelfRLNNVSEETKQQNSELSE 355
Cdd:pfam05483 97 IEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATR----HLCNLLKETCARSAEKTK 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 356 QIKLSNEEKGAMKFeveDLRKRLELADLMLQQCSSQSDPTSATQQAQLL--------LEEKQQLEMHNHQLLESIGHLQ- 426
Cdd:pfam05483 173 KYEYEREETRQVYM---DLNNNIEKMILAFEELRVQAENARLEMHFKLKedhekiqhLEEEYKKEINDKEKQVSLLLIQi 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 427 KERDRYAEQIQVEGRVWKDKTEQLLTQVALVAEERDQNISRVQELEAAITELK-------SAAALLSQEREAQNKAEPQS 499
Cdd:pfam05483 250 TEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKmslqrsmSTQKALEEDLQIATKTICQL 329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 500 SEpsERELALEEvLNTLQQDKDAVTAQFQAQLRDNEQLSRlcaEQETRLGELERRVENQVQEEEDRRRMLEDVQSDKATI 579
Cdd:pfam05483 330 TE--EKEAQMEE-LNKAKAAHSFVVTEFEATTCSLEELLR---TEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNK 403
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 580 SRALTQnrtLKDQLAELQngfvKVTNENMELTNAIQSELHVKKELARRMGELQEELHNIKEQLEVKSQESQGLLAQREQL 659
Cdd:pfam05483 404 EVELEE---LKKILAEDE----KLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDL 476
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1698335935 660 VAHLQQYSAGYQALASEREQLHHQYLQQVQlmdrlhhDESQGRVELEISHSQLNQAQEQLELLVRDNEQLK 730
Cdd:pfam05483 477 KTELEKEKLKNIELTAHCDKLLLENKELTQ-------EASDMTLELKKHQEDIINCKKQEERMLKQIENLE 540
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
230-658 |
4.30e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.19 E-value: 4.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 230 LQKERKEFEDKHSKEHGAMrEQLQVHIQTIGILVSEKSELQTALQYTQQAARQKSAEAEELNNRLQSSKQrvseLERTLS 309
Cdd:TIGR00606 506 LQNEKADLDRKLRKLDQEM-EQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQ----LEDWLH 580
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 310 SVSTQQKQFEKHNKELEKERDSLRLELFRLNNVSEETKQQNSELSEQIklsNEEKGAMKFEV--EDLRKRLELADLMLQQ 387
Cdd:TIGR00606 581 SKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKL---FDVCGSQDEESdlERLKEEIEKSSKQRAM 657
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 388 CSSQSDPTSAtqqaqlLLEEKQQLEMHNHQLLESIGHLQKERDRYAEQIQVEGRVWKDKTEQLLTQVALVAEERDQNISR 467
Cdd:TIGR00606 658 LAGATAVYSQ------FITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGL 731
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 468 VqELEAAITEL--KSAAALLSQEREAQNKAEPQSSEPSERELALEEVLNTLQQDKDAVT-----AQFQAQLRDNE-QLSR 539
Cdd:TIGR00606 732 A-PGRQSIIDLkeKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTdvtimERFQMELKDVErKIAQ 810
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 540 LCAEQETRLGELERRVENQVQEEEDRRRmledvqsdkatisraltqnRTLKDQLAELQngfvKVTNENMELTNAIQSELH 619
Cdd:TIGR00606 811 QAAKLQGSDLDRTVQQVNQEKQEKQHEL-------------------DTVVSKIELNR----KLIQDQQEQIQHLKSKTN 867
|
410 420 430
....*....|....*....|....*....|....*....
gi 1698335935 620 VKKELARRMGELQEELHNIKEQLEVKSQESQGLLAQREQ 658
Cdd:TIGR00606 868 ELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKD 906
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
216-540 |
5.19e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 5.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 216 LDQLTQQTRGLTEQLQKERKEFEDKHSKEHGAMREQLQVHIQTIGILVSEKSELQTALQYTQQAARQKSAEAEELNNRLQ 295
Cdd:COG4717 158 LRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 296 SSK--QRVSELERTLSSVST-----------------------------------QQKQFEKHNKELEKERDSLRLELFR 338
Cdd:COG4717 238 AAAleERLKEARLLLLIAAAllallglggsllsliltiagvlflvlgllallfllLAREKASLGKEAEELQALPALEELE 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 339 LNNVSE-------ETKQQNSELSEQIKLSNEEKGAMKfEVEDLRKRLELADLMLQQ--------CSSQSDPTSATQQAQL 403
Cdd:COG4717 318 EEELEEllaalglPPDLSPEELLELLDRIEELQELLR-EAEELEEELQLEELEQEIaallaeagVEDEEELRAALEQAEE 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 404 LLEEKQQLEMHNHQLLESIGhlqkerDRYAEQIQVEGRVWKDKTEQLLTQVALVAEERDQNISRVQELEAAITELKSAAA 483
Cdd:COG4717 397 YQELKEELEELEEQLEELLG------ELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGE 470
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 1698335935 484 LLSQEREAQNKAEpQSSEPSERELALEEVLNTLQQDKDAVTAQFQAQLRD--NEQLSRL 540
Cdd:COG4717 471 LAELLQELEELKA-ELRELAEEWAALKLALELLEEAREEYREERLPPVLEraSEYFSRL 528
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
211-598 |
6.36e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.82 E-value: 6.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 211 QLNTKLDQLTQQTRGLT-EQLQKERKEFEdkhsKEHGAMREQLQVHIQTIGILVSEKSELQTALQYTQQAARQ-----KS 284
Cdd:PRK03918 369 AKKEELERLKKRLTGLTpEKLEKELEELE----KAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKcpvcgRE 444
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 285 AEAEELNNRLQSSKQRVSELERTLSSVSTQQKQFEKHNKELEKERDSLRlELFRLNNVSEETKQQNSELSeqiKLSNEEK 364
Cdd:PRK03918 445 LTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKES-ELIKLKELAEQLKELEEKLK---KYNLEEL 520
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 365 GAMKFEVEDLRKRLelADLMLQQCSSQSDptsatqqaqllLEEKQQLEMHNHQLLESIGHLQKERDRYAEQIQVEGRVWK 444
Cdd:PRK03918 521 EKKAEEYEKLKEKL--IKLKGEIKSLKKE-----------LEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESV 587
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 445 DKTEQLLTQVALVAEERDQNISRVQELEAAITELKSAAALLSQEREaqnkaepqssEPSERELALEEVLNTLQQDKDAVT 524
Cdd:PRK03918 588 EELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFE----------ELAETEKRLEELRKELEELEKKYS 657
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1698335935 525 AQFQAQLRDN-EQLSRLCAEQETRLGELERRVEnqvqeeeDRRRMLEDVQSDKATISRALTQNRTLKDQLAELQN 598
Cdd:PRK03918 658 EEEYEELREEyLELSRELAGLRAELEELEKRRE-------EIKKTLEKLKEELEEREKAKKELEKLEKALERVEE 725
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
264-732 |
6.47e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.39 E-value: 6.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 264 SEKSELQTALQYTQQAARQKSAEAEELNNRLQSSKQRVSELERTLSSVSTQQKQFEKHNKELEKERDSLRLELFRLNNVS 343
Cdd:TIGR04523 33 TEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEI 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 344 EETKQQNSELSEQIKLSNEE-----KGAMKFEVEDLRKRLELADLmlqqcssqsdptsaTQQAQLLLEEKQQLEMHNHQL 418
Cdd:TIGR04523 113 KNDKEQKNKLEVELNKLEKQkkenkKNIDKFLTEIKKKEKELEKL--------------NNKYNDLKKQKEELENELNLL 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 419 LESIGHLQKERDRYAEQIQvegrvwkdKTEQLLTQValvaeerDQNISRVQELEAAITELKsaaallSQEREAQNKAEPQ 498
Cdd:TIGR04523 179 EKEKLNIQKNIDKIKNKLL--------KLELLLSNL-------KKKIQKNKSLESQISELK------KQNNQLKDNIEKK 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 499 SSEPSERELALEEV---LNTLQQDKDAVTAQFQAQLRDNEQLSRLCAEQETRLGELERRVENQVQEEE-----DRRRMLE 570
Cdd:TIGR04523 238 QQEINEKTTEISNTqtqLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEqdwnkELKSELK 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 571 DVQSDKATISRALTQNR----TLKDQLAELQNGFVKVTNENMELTNAIQselhvkkelarrmgELQEELHNIKEQLEVKS 646
Cdd:TIGR04523 318 NQEKKLEEIQNQISQNNkiisQLNEQISQLKKELTNSESENSEKQRELE--------------EKQNEIEKLKKENQSYK 383
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 647 QESQGLLAQREQLVAHLQQysagYQALASEREQLHHQYLQQVQLMDRLHHDESQGRVELEISHSQLNQAQEQLELLVRDN 726
Cdd:TIGR04523 384 QEIKNLESQINDLESKIQN----QEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNL 459
|
....*.
gi 1698335935 727 EQLKSE 732
Cdd:TIGR04523 460 DNTRES 465
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
445-757 |
7.83e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.32 E-value: 7.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 445 DKTEQLLTQVALVAEERDQNISRVQELEAAITELKSAAALLSQEREAQN--------------KAEPQSSEPSERELALE 510
Cdd:COG3096 361 ERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQtraiqyqqavqaleKARALCGLPDLTPENAE 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 511 EVLNTLQQDKDAVTAQfqaqLRDNEQ---LSRLCAEQETRLGELERRVENQVQEE---EDRRRMLEDVQSDKATISRALT 584
Cdd:COG3096 441 DYLAAFRAKEQQATEE----VLELEQklsVADAARRQFEKAYELVCKIAGEVERSqawQTARELLRRYRSQQALAQRLQQ 516
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 585 QNRTLKD--QLAELQNgfvKVTNENMELTNAIQSELHVKKELARRMGELQEELHNIKEQLEVKSQESQGLLAQREQLVAH 662
Cdd:COG3096 517 LRAQLAEleQRLRQQQ---NAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRAR 593
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 663 LQQYSAgyQALAsereqlhhqylqQVQLMDRLHHDESQGRVELEISHSQLNQAQEQLELLvRDNEQLKSEVRELLNSSAL 742
Cdd:COG3096 594 IKELAA--RAPA------------WLAAQDALERLREQSGEALADSQEVTAAMQQLLERE-REATVERDELAARKQALES 658
|
330
....*....|....*
gi 1698335935 743 ASSSLDHGEGRESPQ 757
Cdd:COG3096 659 QIERLSQPGGAEDPR 673
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
399-665 |
8.09e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 40.28 E-value: 8.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 399 QQAQLLLEEKQQLEMHNHQLLESIGHLQKERDRYAEQIQVEGRVWKDKTEQLLTQVALVAEERDQNiSRVQELEAAITEL 478
Cdd:PRK11281 66 EQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLA-QTLDQLQNAQNDL 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 479 KSAAALLSQEREAQNKAEPQSSEPSERELALEEVLNTLQQDKDAVTAQFQAQLrdNEQLSRLCAEQETRLGELErrVENQ 558
Cdd:PRK11281 145 AEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLL--QAEQALLNAQNDLQRKSLE--GNTQ 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 559 VQEeedrrrmLEDVQSDKATisraLTQNRtLKDQLAELQNgfvkVTNENmeltNAIQSELHVKKelARRMGELQEELHN- 637
Cdd:PRK11281 221 LQD-------LLQKQRDYLT----ARIQR-LEHQLQLLQE----AINSK----RLTLSEKTVQE--AQSQDEAARIQANp 278
|
250 260
....*....|....*....|....*....
gi 1698335935 638 -IKEQLEVKSQESQGLLAQREQLVAHLQQ 665
Cdd:PRK11281 279 lVAQELEINLQLSQRLLKATEKLNTLTQQ 307
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
264-678 |
8.21e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.21 E-value: 8.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 264 SEKSELQTALQYTQQAARQKSAE----AEELNNRLQSSKQRVSELERTLSSVSTQQKQFEKHNKElekerdSLRLELFRL 339
Cdd:pfam12128 276 SRQEERQETSAELNQLLRTLDDQwkekRDELNGELSAADAAVAKDRSELEALEDQHGAFLDADIE------TAAADQEQL 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 340 NNVSEETKQQNSELSEQikLSNEEKGAMKFEVEDLRKRLELADlMLQQCSSQSDPTSATQQAQLLLEEK--QQLEMH-NH 416
Cdd:pfam12128 350 PSWQSELENLEERLKAL--TGKHQDVTAKYNRRRSKIKEQNNR-DIAGIKDKLAKIREARDRQLAVAEDdlQALESElRE 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 417 QLLESIGHLQKERDRYAEQIQVEgrvwkdktEQLLTQVALVAEERDQNISRVQELEAAITELKSAAA----LLSQEREAQ 492
Cdd:pfam12128 427 QLEAGKLEFNEEEYRLKSRLGEL--------KLRLNQATATPELLLQLENFDERIERAREEQEAANAeverLQSELRQAR 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 493 NKAEPQSSEPSERELALEEVLNTLQQDKDAVTA-----------------QFQAQLRDNEQLSRL---------CAEQET 546
Cdd:pfam12128 499 KRRDQASEALRQASRRLEERQSALDELELQLFPqagtllhflrkeapdweQSIGKVISPELLHRTdldpevwdgSVGGEL 578
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 547 RLGELERRVE-----NQVQEEEDRRRML----EDVQSDKATISRALTQNRTLKDQLAELQNG--FVKVTNENME-----L 610
Cdd:pfam12128 579 NLYGVKLDLKridvpEWAASEEELRERLdkaeEALQSAREKQAAAEEQLVQANGELEKASREetFARTALKNARldlrrL 658
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 611 TNAIQSE-LHVKKELARRMGELQEELHNIKEQLEVKSQESQGLLA-QREQLVAHLQQYSAGYQALASERE 678
Cdd:pfam12128 659 FDEKQSEkDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEeQKEQKREARTEKQAYWQVVEGALD 728
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
291-734 |
8.57e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 40.27 E-value: 8.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 291 NNRLQSSKQRVSELERTLSSVSTQQKQFEKHNKELEKERDSLRLELFRLNNVSEETKQQNSELSE-QIKLSNEEKGAMKF 369
Cdd:PRK01156 196 NLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTaESDLSMELEKNNYY 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 370 ------------------------------EVEDLRKRLELADLMLQQCSSQSDPTSATQQAQLLLEEKQ-QLEMHNHQL 418
Cdd:PRK01156 276 keleerhmkiindpvyknrnyindyfkyknDIENKKQILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKsRYDDLNNQI 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 419 LE-------------SIGHLQKERDRYAEQIQVEGRVWKDKTEQLLTQVALVAEERDQNISRVQELEAAITELK-SAAAL 484
Cdd:PRK01156 356 LElegyemdynsylkSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNqRIRAL 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 485 LSQEREAQNKAEPQSSE-------PSERELALEEVLNTLQQDKDAVTAQFQAQLRDNEQLSRLCAEQETRLGELE----R 553
Cdd:PRK01156 436 RENLDELSRNMEMLNGQsvcpvcgTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLEseeiN 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 554 RVENQVQEEEDRRRMLEDVQSDKATISRALTQNRTLKDQLAELQNGFVKVTNENMELTNAIQSELHV------KKELARR 627
Cdd:PRK01156 516 KSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLIDIetnrsrSNEIKKQ 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 628 MGELQEELHNIKEQLEVKSQESQGLLAQREQLVAHLQQYSAGYQALASEREQLHHQ---YLQQVQLMDRLHHDESQGRVE 704
Cdd:PRK01156 596 LNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKidnYKKQIAEIDSIIPDLKEITSR 675
|
490 500 510
....*....|....*....|....*....|
gi 1698335935 705 LEISHSQLNQAQEQLELLVRDNEQLKSEVR 734
Cdd:PRK01156 676 INDIEDNLKKSRKALDDAKANRARLESTIE 705
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
386-658 |
9.29e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 40.04 E-value: 9.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 386 QQCSSQSDPTSATQQAQLLLEEKQQLEMHNHQLLESIGHLQKERDRYAE---------QIQVEGRvwkdkteQLLTQVAl 456
Cdd:PRK10929 86 QQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQDRAREisdslsqlpQQQTEAR-------RQLNEIE- 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 457 vaeerdqniSRVQELEAAITELKSAAALLSQEREAQNKAEPQssepserELALeevlntlqqdkdavtAQFQAQLRdnEQ 536
Cdd:PRK10929 158 ---------RRLQTLGTPNTPLAQAQLTALQAESAALKALVD-------ELEL---------------AQLSANNR--QE 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 537 LSRLCAEQetrlgeLERRVENQVQEEEDRRRMLEDVQSDKAtiSRALTQNRTLKDQLAELQNGFVKVTNENMELTNAIQS 616
Cdd:PRK10929 205 LARLRSEL------AKKRSQQLDAYLQALRNQLNSQRQREA--ERALESTELLAEQSGDLPKSIVAQFKINRELSQALNQ 276
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1698335935 617 ElhvkkelARRMGELQEELHNIKEQ-LEVKsqesQGLLAQREQ 658
Cdd:PRK10929 277 Q-------AQRMDLIASQQRQAASQtLQVR----QALNTLREQ 308
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
219-826 |
9.83e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 40.12 E-value: 9.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 219 LTQQTRGLTEQLQKERKEFEDKHSKEHGAMREQLQVHIQTIGILVSEKSElqTALQYTQQAARQKSAEAEELNNRLQSSK 298
Cdd:pfam07111 61 LSQQAELISRQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELDALAVAE--KAGQAEAEGLRAALAGAEMVRKNLEEGS 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 299 QRVSELERTLssvstQQKQFEKHNKELEKERDSL--RLELFRLNNVSEETKQ--QNSELSEQIKLSNEEKGAMKFEVEDL 374
Cdd:pfam07111 139 QRELEEIQRL-----HQEQLSSLTQAHEEALSSLtsKAEGLEKSLNSLETKRagEAKQLAEAQKEAELLRKQLSKTQEEL 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 375 RKRLELADLMLQQCSSQSDPTSatqqaqllleEKQQLEMHNHQLLESIGHLQKERDryaeQIQVEGRVWKDKTEQLLTQV 454
Cdd:pfam07111 214 EAQVTLVESLRKYVGEQVPPEV----------HSQTWELERQELLDTMQHLQEDRA----DLQATVELLQVRVQSLTHML 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 455 ALVAEERDQNISRVQELEAAITelKSAAALLSQEREA----QNKAEPQSSEPSERELALEEVLNTLQQDkdaVTAQFQAQ 530
Cdd:pfam07111 280 ALQEEELTRKIQPSDSLEPEFP--KKCRSLLNRWREKvfalMVQLKAQDLEHRDSVKQLRGQVAELQEQ---VTSQSQEQ 354
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 531 LRDNEQLSRLCAEQETRLGELERRVENQVQEEEDRRRMLEDVQSD----KATISRALTQNRTLKDQLAELQNGFVKVTNE 606
Cdd:pfam07111 355 AILQRALQDKAAEVEVERMSAKGLQMELSRAQEARRRQQQQTASAeeqlKFVVNAMSSTQIWLETTMTRVEQAVARIPSL 434
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 607 NMELTNAIQSELHVKKELARRMGELQEElhnikeqlevksQESQGLLAQREQLVAHLqqySAGYQALASEREQLHhqylQ 686
Cdd:pfam07111 435 SNRLSYAVRKVHTIKGLMARKVALAQLR------------QESCPPPPPAPPVDADL---SLELEQLREERNRLD----A 495
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1698335935 687 QVQLMDRLHHDE-SQGRVELEISHSQLNQAQEQLEllvrdneqlksevRELLNSSALASSSLDHGEGRESPQQEDSISAS 765
Cdd:pfam07111 496 ELQLSAHLIQQEvGRAREQGEAERQQLSEVAQQLE-------------QELQRAQESLASVGQQLEVARQGQQESTEEAA 562
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1698335935 766 IIIPEDFENQKEMEQFIRGALAQVEAerdEARRQLEE-EHRLHLAARYQAAVALRLEQ-QHQS 826
Cdd:pfam07111 563 SLRQELTQQQEIYGQALQEKVAEVET---RLREQLSDtKRRLNEARREQAKAVVSLRQiQHRA 622
|
|
| |
