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Conserved domains on  [gi|928057292|ref|XP_013878000|]
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PREDICTED: cartilage intermediate layer protein 1-like [Austrofundulus limnaeus]

Protein Classification

Mucin2_WxxW domain-containing protein( domain architecture ID 10594824)

Mucin2_WxxW domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Mucin2_WxxW pfam13330
Mucin-2 protein WxxW repeating region; This family is repeating region found on mucins 2 and 5. ...
 27-110 7.00e-25

Mucin-2 protein WxxW repeating region; This family is repeating region found on mucins 2 and 5. The function is not known, but the repeat can be present in up to 32 copies, as in Swiss:C3Y5K5, from Branchiostoma floridae. The region carries a highly conserved WxxW sequence motif and also has at least six well conserved cysteine residues.


:

Pssm-ID: 463846 [Multi-domain]  Cd Length: 85  Bit Score: 90.09  E-value: 7.00e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 928057292   27 WTNWFNDDSPRGTG--DHETFPQLwgRHPAEICEHPMGIEA--ETTTGIPAEKTGQKLnTYSKEDGLICLNKEQKSGSCF 102
Cdd:pfam13330   1 WTPWFDVDNPSGSGggDFETLENL--RAYGKFCENPTDIECraEPPTGVPASETGQVV-TCDVTTGLVCRNADQQPDGCL 77


                  ....*...
gi 928057292  103 DYKVRFEC 110
Cdd:pfam13330  78 DYEVRFLC 85
 
Name Accession Description Interval E-value
Mucin2_WxxW pfam13330
Mucin-2 protein WxxW repeating region; This family is repeating region found on mucins 2 and 5. ...
 27-110 7.00e-25

Mucin-2 protein WxxW repeating region; This family is repeating region found on mucins 2 and 5. The function is not known, but the repeat can be present in up to 32 copies, as in Swiss:C3Y5K5, from Branchiostoma floridae. The region carries a highly conserved WxxW sequence motif and also has at least six well conserved cysteine residues.


Pssm-ID: 463846 [Multi-domain]  Cd Length: 85  Bit Score: 90.09  E-value: 7.00e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 928057292   27 WTNWFNDDSPRGTG--DHETFPQLwgRHPAEICEHPMGIEA--ETTTGIPAEKTGQKLnTYSKEDGLICLNKEQKSGSCF 102
Cdd:pfam13330   1 WTPWFDVDNPSGSGggDFETLENL--RAYGKFCENPTDIECraEPPTGVPASETGQVV-TCDVTTGLVCRNADQQPDGCL 77


                  ....*...
gi 928057292  103 DYKVRFEC 110
Cdd:pfam13330  78 DYEVRFLC 85
 
Name Accession Description Interval E-value
Mucin2_WxxW pfam13330
Mucin-2 protein WxxW repeating region; This family is repeating region found on mucins 2 and 5. ...
 27-110 7.00e-25

Mucin-2 protein WxxW repeating region; This family is repeating region found on mucins 2 and 5. The function is not known, but the repeat can be present in up to 32 copies, as in Swiss:C3Y5K5, from Branchiostoma floridae. The region carries a highly conserved WxxW sequence motif and also has at least six well conserved cysteine residues.


Pssm-ID: 463846 [Multi-domain]  Cd Length: 85  Bit Score: 90.09  E-value: 7.00e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 928057292   27 WTNWFNDDSPRGTG--DHETFPQLwgRHPAEICEHPMGIEA--ETTTGIPAEKTGQKLnTYSKEDGLICLNKEQKSGSCF 102
Cdd:pfam13330   1 WTPWFDVDNPSGSGggDFETLENL--RAYGKFCENPTDIECraEPPTGVPASETGQVV-TCDVTTGLVCRNADQQPDGCL 77


                  ....*...
gi 928057292  103 DYKVRFEC 110
Cdd:pfam13330  78 DYEVRFLC 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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