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Conserved domains on  [gi|955385420|ref|XP_014626592|]
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ultraviolet-B receptor UVR8 isoform X1 [Glycine max]

Protein Classification

RCC1-like domain-containing protein( domain architecture ID 13421108)

RCC1 (regulator of chromosome condensation)-like (RLD) domain-containing is a versatile domain which may perform many different functions, including guanine nucleotide exchange on small GTP-binding proteins, enzyme inhibition or interaction with proteins and lipids

CATH:  2.130.10.30
PubMed:  18442486
SCOP:  3001704

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 222-470 9.33e-44

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


:

Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 157.06  E-value: 9.33e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955385420 222 ASVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSrirmvSSPHLVPcinsssygkdmARVSISSDgqnfrvpgsyIKGIA 301
Cdd:COG5184    1 TQVAAGGSHSCALKSDGTVWCWGDNSYGQLGDGT-----TTDRSTP-----------VRVPGLSN----------VVAVA 54

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955385420 302 CGGRHSAVITDAGAVLTFGWGLYGQCGQGSTDDELSPSCVSSLLGIqiEGVAAGLWHTVCTSVDGDVYAFGGNQFGQLGT 381
Cdd:COG5184   55 AGGDHTCALKADGTVWCWGNNSYGQLGDGTTTDRTTPVKVPGLTGV--VAVAAGYYHSCALKSDGTVWCWGDNSSGQLGD 132

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955385420 382 GgDQAEQTIPRLLDcPSLENVnvKRISCGARHTALIADNGKVFCWGWNKYGQLGLGDVIDRNIPSEVTIEGCVAKnVACG 461
Cdd:COG5184  133 G-TTTNRLTPVQVD-AGLSGV--VAIAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTTDRPTPVQVGGLSGVVA-VAAG 207


                 ....*....
gi 955385420 462 WWHTLLLAE 470
Cdd:COG5184  208 GDHSCALKS 216
ATS1 super family cl34932
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 17-338 4.27e-16

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


The actual alignment was detected with superfamily member COG5184:

Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 79.25  E-value: 4.27e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955385420  17 VYMWGY-LPGALPQRTPLLTPLLVRVPPSGYFWKDVCGGGcGFAMAISEPGKLITWGSTDD--LGQsyvtsGKHGETPEP 93
Cdd:COG5184  119 VWCWGDnSSGQLGDGTTTNRLTPVQVDAGLSGVVAIAAGG-YHTCALKSDGTVWCWGANSYgqLGD-----GTTTDRPTP 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955385420  94 FPLPTEVTIVKAAAGWAHCVSVTDCGEVYTWGWREcvpsgkvFGESLTGVSPEKDVPrrqssflteqvsprsqgskstgg 173
Cdd:COG5184  193 VQVGGLSGVVAVAAGGDHSCALKSDGTVWCWGSNS-------SGQLGDGTTTDRATP----------------------- 242

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955385420 174 tasgtsgeesskrrrvssakqtaetssssddtqtalpclVTLNPGVRIASVAAGGRHTLALSDIGQVWGWGYGGEGQLGL 253
Cdd:COG5184  243 ---------------------------------------VQVAGLTGVVAIAAGGSHTCALKSDGTVWCWGDNSYGQLGD 283

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955385420 254 GSRIRmVSSPHLVPcinsssygkdmarvsissdgqnfrvPGSYIKGIACGGRHSAVITDAGAVLTFGWGLYGQCGQGSTD 333
Cdd:COG5184  284 GTTTD-RSTPVKVP-------------------------GLSGVVAVAAGSSHTCALLTDGTVWCWGDNAYGQLGDGTTT 337


                 ....*
gi 955385420 334 DELSP 338
Cdd:COG5184  338 DRSTP 342
 
Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 222-470 9.33e-44

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 157.06  E-value: 9.33e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955385420 222 ASVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSrirmvSSPHLVPcinsssygkdmARVSISSDgqnfrvpgsyIKGIA 301
Cdd:COG5184    1 TQVAAGGSHSCALKSDGTVWCWGDNSYGQLGDGT-----TTDRSTP-----------VRVPGLSN----------VVAVA 54

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955385420 302 CGGRHSAVITDAGAVLTFGWGLYGQCGQGSTDDELSPSCVSSLLGIqiEGVAAGLWHTVCTSVDGDVYAFGGNQFGQLGT 381
Cdd:COG5184   55 AGGDHTCALKADGTVWCWGNNSYGQLGDGTTTDRTTPVKVPGLTGV--VAVAAGYYHSCALKSDGTVWCWGDNSSGQLGD 132

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955385420 382 GgDQAEQTIPRLLDcPSLENVnvKRISCGARHTALIADNGKVFCWGWNKYGQLGLGDVIDRNIPSEVTIEGCVAKnVACG 461
Cdd:COG5184  133 G-TTTNRLTPVQVD-AGLSGV--VAIAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTTDRPTPVQVGGLSGVVA-VAAG 207


                 ....*....
gi 955385420 462 WWHTLLLAE 470
Cdd:COG5184  208 GDHSCALKS 216
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 17-338 4.27e-16

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 79.25  E-value: 4.27e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955385420  17 VYMWGY-LPGALPQRTPLLTPLLVRVPPSGYFWKDVCGGGcGFAMAISEPGKLITWGSTDD--LGQsyvtsGKHGETPEP 93
Cdd:COG5184  119 VWCWGDnSSGQLGDGTTTNRLTPVQVDAGLSGVVAIAAGG-YHTCALKSDGTVWCWGANSYgqLGD-----GTTTDRPTP 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955385420  94 FPLPTEVTIVKAAAGWAHCVSVTDCGEVYTWGWREcvpsgkvFGESLTGVSPEKDVPrrqssflteqvsprsqgskstgg 173
Cdd:COG5184  193 VQVGGLSGVVAVAAGGDHSCALKSDGTVWCWGSNS-------SGQLGDGTTTDRATP----------------------- 242

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955385420 174 tasgtsgeesskrrrvssakqtaetssssddtqtalpclVTLNPGVRIASVAAGGRHTLALSDIGQVWGWGYGGEGQLGL 253
Cdd:COG5184  243 ---------------------------------------VQVAGLTGVVAIAAGGSHTCALKSDGTVWCWGDNSYGQLGD 283

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955385420 254 GSRIRmVSSPHLVPcinsssygkdmarvsissdgqnfrvPGSYIKGIACGGRHSAVITDAGAVLTFGWGLYGQCGQGSTD 333
Cdd:COG5184  284 GTTTD-RSTPVKVP-------------------------GLSGVVAVAAGSSHTCALLTDGTVWCWGDNAYGQLGDGTTT 337


                 ....*
gi 955385420 334 DELSP 338
Cdd:COG5184  338 DRSTP 342
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
420-468 9.63e-12

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 59.84  E-value: 9.63e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 955385420  420 NGKVFCWGWNKYGQLGLGDVIDRNIPSEVT-IEGCVAKNVACGWWHTLLL 468
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEgLSGNKVVQVACGGDHTVAL 50
 
Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 222-470 9.33e-44

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 157.06  E-value: 9.33e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955385420 222 ASVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSrirmvSSPHLVPcinsssygkdmARVSISSDgqnfrvpgsyIKGIA 301
Cdd:COG5184    1 TQVAAGGSHSCALKSDGTVWCWGDNSYGQLGDGT-----TTDRSTP-----------VRVPGLSN----------VVAVA 54

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955385420 302 CGGRHSAVITDAGAVLTFGWGLYGQCGQGSTDDELSPSCVSSLLGIqiEGVAAGLWHTVCTSVDGDVYAFGGNQFGQLGT 381
Cdd:COG5184   55 AGGDHTCALKADGTVWCWGNNSYGQLGDGTTTDRTTPVKVPGLTGV--VAVAAGYYHSCALKSDGTVWCWGDNSSGQLGD 132

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955385420 382 GgDQAEQTIPRLLDcPSLENVnvKRISCGARHTALIADNGKVFCWGWNKYGQLGLGDVIDRNIPSEVTIEGCVAKnVACG 461
Cdd:COG5184  133 G-TTTNRLTPVQVD-AGLSGV--VAIAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTTDRPTPVQVGGLSGVVA-VAAG 207


                 ....*....
gi 955385420 462 WWHTLLLAE 470
Cdd:COG5184  208 GDHSCALKS 216
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 50-445 1.10e-42

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 154.36  E-value: 1.10e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955385420  50 DVCGGGcGFAMAISEPGKLITWGStDDLGQsyVTSGKHGETPEPFPLPTEVTIVKAAAGWAHCVSVTDCGEVYTWGWREc 129
Cdd:COG5184    2 QVAAGG-SHSCALKSDGTVWCWGD-NSYGQ--LGDGTTTDRSTPVRVPGLSNVVAVAAGGDHTCALKADGTVWCWGNNS- 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955385420 130 vpsgkvFGESLTGVSPEKDVPRRQSSFLT-EQVSPRSQGS--KSTGGTA----SGTSGeesskrrrvssakQTAETSSSS 202
Cdd:COG5184   77 ------YGQLGDGTTTDRTTPVKVPGLTGvVAVAAGYYHScaLKSDGTVwcwgDNSSG-------------QLGDGTTTN 137

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955385420 203 DDTqtalPCLVTLNPGvRIASVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSrirmvSSPHLVPcinsssygkdmARVS 282
Cdd:COG5184  138 RLT----PVQVDAGLS-GVVAIAAGGYHTCALKSDGTVWCWGANSYGQLGDGT-----TTDRPTP-----------VQVG 196

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955385420 283 ISSDgqnfrvpgsyIKGIACGGRHSAVITDAGAVLTFGWGLYGQCGQGSTDDELSPSCVSSLLGIQieGVAAGLWHTVCT 362
Cdd:COG5184  197 GLSG----------VVAVAAGGDHSCALKSDGTVWCWGSNSSGQLGDGTTTDRATPVQVAGLTGVV--AIAAGGSHTCAL 264

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955385420 363 SVDGDVYAFGGNQFGQLGTGgDQAEQTIPRLLDcpslENVNVKRISCGARHTALIADNGKVFCWGWNKYGQLGLGDVIDR 442
Cdd:COG5184  265 KSDGTVWCWGDNSYGQLGDG-TTTDRSTPVKVP----GLSGVVAVAAGSSHTCALLTDGTVWCWGDNAYGQLGDGTTTDR 339


                 ...
gi 955385420 443 NIP 445
Cdd:COG5184  340 STP 342
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 213-471 1.47e-42

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 153.98  E-value: 1.47e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955385420 213 VTLNPGVRIASVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSrirmvSSPHLVPcinsssygkdmARVSISSDGqnfrv 292
Cdd:COG5184   92 VKVPGLTGVVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGT-----TTNRLTP-----------VQVDAGLSG----- 150

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955385420 293 pgsyIKGIACGGRHSAVITDAGAVLTFGWGLYGQCGQGSTDDELSPSCVSSLLGIQieGVAAGLWHTVCTSVDGDVYAFG 372
Cdd:COG5184  151 ----VVAIAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTTDRPTPVQVGGLSGVV--AVAAGGDHSCALKSDGTVWCWG 224

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955385420 373 GNQFGQLGTGgDQAEQTIPRLLDCPSlenvNVKRISCGARHTALIADNGKVFCWGWNKYGQLGLGDVIDRNIPSEVTIEG 452
Cdd:COG5184  225 SNSSGQLGDG-TTTDRATPVQVAGLT----GVVAIAAGGSHTCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVKVPGLS 299

                        250
                 ....*....|....*....
gi 955385420 453 CVAKnVACGWWHTLLLAES 471
Cdd:COG5184  300 GVVA-VAAGSSHTCALLTD 317
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 220-468 3.89e-41

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 150.13  E-value: 3.89e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955385420 220 RIASVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSrirmvSSPHLVPcinsssygkdmARVSISSDgqnfrvpgsyIKG 299
Cdd:COG5184   49 NVVAVAAGGDHTCALKADGTVWCWGNNSYGQLGDGT-----TTDRTTP-----------VKVPGLTG----------VVA 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955385420 300 IACGGRHSAVITDAGAVLTFGWGLYGQCGQGSTDDELSPSCVSSLLGiQIEGVAAGLWHTVCTSVDGDVYAFGGNQFGQL 379
Cdd:COG5184  103 VAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTTTNRLTPVQVDAGLS-GVVAIAAGGYHTCALKSDGTVWCWGANSYGQL 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955385420 380 GTGgDQAEQTIPRLLDCPSlenvNVKRISCGARHTALIADNGKVFCWGWNKYGQLGLGDVIDRNIPSEVTIEGcVAKNVA 459
Cdd:COG5184  182 GDG-TTTDRPTPVQVGGLS----GVVAVAAGGDHSCALKSDGTVWCWGSNSSGQLGDGTTTDRATPVQVAGLT-GVVAIA 255


                 ....*....
gi 955385420 460 CGWWHTLLL 468
Cdd:COG5184  256 AGGSHTCAL 264
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 300-471 1.01e-30

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 121.62  E-value: 1.01e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955385420 300 IACGGRHSAVITDAGAVLTFGWGLYGQCGQGSTDDELSPSCVSSLLGIqiEGVAAGLWHTVCTSVDGDVYAFGGNQFGQL 379
Cdd:COG5184    3 VAAGGSHSCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVRVPGLSNV--VAVAAGGDHTCALKADGTVWCWGNNSYGQL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955385420 380 GTGGDQAEQTIPRLldcPSLENVnvKRISCGARHTALIADNGKVFCWGWNKYGQLGLGDVIDRNIPSEVTIEGCVAKNVA 459
Cdd:COG5184   81 GDGTTTDRTTPVKV---PGLTGV--VAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTTTNRLTPVQVDAGLSGVVAIA 155

                        170
                 ....*....|..
gi 955385420 460 CGWWHTLLLAES 471
Cdd:COG5184  156 AGGYHTCALKSD 167
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 17-338 4.27e-16

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 79.25  E-value: 4.27e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955385420  17 VYMWGY-LPGALPQRTPLLTPLLVRVPPSGYFWKDVCGGGcGFAMAISEPGKLITWGSTDD--LGQsyvtsGKHGETPEP 93
Cdd:COG5184  119 VWCWGDnSSGQLGDGTTTNRLTPVQVDAGLSGVVAIAAGG-YHTCALKSDGTVWCWGANSYgqLGD-----GTTTDRPTP 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955385420  94 FPLPTEVTIVKAAAGWAHCVSVTDCGEVYTWGWREcvpsgkvFGESLTGVSPEKDVPrrqssflteqvsprsqgskstgg 173
Cdd:COG5184  193 VQVGGLSGVVAVAAGGDHSCALKSDGTVWCWGSNS-------SGQLGDGTTTDRATP----------------------- 242

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955385420 174 tasgtsgeesskrrrvssakqtaetssssddtqtalpclVTLNPGVRIASVAAGGRHTLALSDIGQVWGWGYGGEGQLGL 253
Cdd:COG5184  243 ---------------------------------------VQVAGLTGVVAIAAGGSHTCALKSDGTVWCWGDNSYGQLGD 283

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955385420 254 GSRIRmVSSPHLVPcinsssygkdmarvsissdgqnfrvPGSYIKGIACGGRHSAVITDAGAVLTFGWGLYGQCGQGSTD 333
Cdd:COG5184  284 GTTTD-RSTPVKVP-------------------------GLSGVVAVAAGSSHTCALLTDGTVWCWGDNAYGQLGDGTTT 337


                 ....*
gi 955385420 334 DELSP 338
Cdd:COG5184  338 DRSTP 342
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
420-468 9.63e-12

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 59.84  E-value: 9.63e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 955385420  420 NGKVFCWGWNKYGQLGLGDVIDRNIPSEVT-IEGCVAKNVACGWWHTLLL 468
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEgLSGNKVVQVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
365-417 6.29e-11

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 57.53  E-value: 6.29e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 955385420  365 DGDVYAFGGNQFGQLGTgGDQAEQTIPRLLdcPSLENVNVKRISCGARHTALI 417
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGL-GTTENVLVPQKV--EGLSGNKVVQVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
314-361 6.25e-09

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 51.75  E-value: 6.25e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 955385420  314 GAVLTFGWGLYGQCGQGSTDDELSPSCVSSLLGIQIEGVAAGLWHTVC 361
Cdd:pfam00415   2 GRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSGNKVVQVACGGDHTVA 49
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
404-433 9.75e-09

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 50.50  E-value: 9.75e-09
                          10        20        30
                  ....*....|....*....|....*....|
gi 955385420  404 VKRISCGARHTALIADNGKVFCWGWNKYGQ 433
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
221-250 1.85e-06

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 44.34  E-value: 1.85e-06
                          10        20        30
                  ....*....|....*....|....*....|
gi 955385420  221 IASVAAGGRHTLALSDIGQVWGWGYGGEGQ 250
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
238-310 8.34e-06

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 42.89  E-value: 8.34e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 955385420  238 GQVWGWGYGGEGQLGLGSRIRmVSSPHLVPcinsssygkdmarvsissdgqnfRVPGSYIKGIACGGRHSAVI 310
Cdd:pfam00415   2 GRVYTWGRNDYGQLGLGTTEN-VLVPQKVE-----------------------GLSGNKVVQVACGGDHTVAL 50
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
349-378 2.62e-04

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 38.17  E-value: 2.62e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 955385420  349 IEGVAAGLWHTVCTSVDGDVYAFGGNQFGQ 378
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
297-326 3.03e-04

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 37.79  E-value: 3.03e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 955385420  297 IKGIACGGRHSAVITDAGAVLTFGWGLYGQ 326
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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