|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
77-922 |
2.27e-21 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 101.29 E-value: 2.27e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 77 KLTRENNELHLEVLKLK-EQSDHHIKDLKASLRRAENEAADLRFLNNQYVHKIKLLEKESKAKTEKIQQLQEK--NLQAV 153
Cdd:TIGR02168 217 ELKAELRELELALLVLRlEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKElyALANE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 154 VQTPGGRKRNIPFRRQRMQIDQpvppSAVSAYP--VPQPEDPYIADLLQVADnRIQELQSEVTQLQEKLEISENGKKNYS 231
Cdd:TIGR02168 297 ISRLEQQKQILRERLANLERQL----EELEAQLeeLESKLDELAEELAELEE-KLEELKEELESLEAELEELEAELEELE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 232 KQVELRDKEIERLmlaldggrSHEVISLESRSKSNEKLIAQLNLQVEYLQQSNKELENRIQDLLDTKKNvtsevvhlsNK 311
Cdd:TIGR02168 372 SRLEELEEQLETL--------RSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE---------AE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 312 NEELCQELNEIDHLAQQLERHKEIVLETADkeigEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSeelfGKAD 391
Cdd:TIGR02168 435 LKELQAELEELEEELEELQEELERLEEALE----ELREELEEAEQALDAAERELAQLQARLDSLERLQENLE----GFSE 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 392 DKENLELLLNQLEQEKQRLTEKTEnFEiKERELVLEIermrleygiALGdkspSRLDAFVKtleDDRDYYKRELEYLQKM 471
Cdd:TIGR02168 507 GVKALLKNQSGLSGILGVLSELIS-VD-EGYEAAIEA---------ALG----GRLQAVVV---ENLNAAKKAIAFLKQN 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 472 IKRRPS----PSRRSPEKSEDLRLITRERDELQSMLDRFEKHMIEIQSNVKLLTAerdrlNILYEQSQSELNRLRREAKH 547
Cdd:TIGR02168 569 ELGRVTflplDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLG-----GVLVVDDLDNALELAKKLRP 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 548 NlvsQSHVGEDGDASLADFRRLmaeKESLREKLKIQQEAANLEKskmqhdisvLENNIQQFELERCELKSTISILKERIK 627
Cdd:TIGR02168 644 G---YRIVTLDGDLVRPGGVIT---GGSAKTNSSILERRREIEE---------LEEKIEELEEKIAELEKALAELRKELE 708
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 628 SLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQD 707
Cdd:TIGR02168 709 ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE 788
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 708 EAVNVLRSTISVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQL 787
Cdd:TIGR02168 789 AQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELI 868
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 788 DASHTEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESLIaskekenQEL 867
Cdd:TIGR02168 869 EELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRI-------DNL 941
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*
gi 2024408242 868 LEKFRmlhtqaEDWEIKAHQAEGESSSIrlellsvDTDRRHLRERVELLEKEIQE 922
Cdd:TIGR02168 942 QERLS------EEYSLTLEEAEALENKI-------EDDEEEARRRLKRLENKIKE 983
|
|
| cc_Cep135_MBD |
cd22292 |
coiled-coil microtubule binding domain of centrosomal protein of 135 kDa (Cep135) and similar ... |
81-142 |
6.32e-21 |
|
coiled-coil microtubule binding domain of centrosomal protein of 135 kDa (Cep135) and similar proteins; Cep135, also called centrosomal protein 4, is involved in early centriole assembly, duplication, biogenesis, and formation. It is required for the recruitment of CEP295 to the proximal end of new-born centrioles at the centriolar microtubule wall during early S phase in a PLK4-dependent manner. This model corresponds to a conserved coiled-coil domain of Cep135, which is critical for microtubule binding.
Pssm-ID: 412088 [Multi-domain] Cd Length: 62 Bit Score: 87.24 E-value: 6.32e-21
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024408242 81 ENNELHLEVLKLKEQSDHHIKDLKASLRRAENEAADLRFLNNQYVHKIKLLEKESKAKTEKI 142
Cdd:cd22292 1 ENNELHLELIKLKEESDAKIKDLKSSLRKLEHENADLRFLNSQYLHKIKVLEKESKAKSEKI 62
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
314-1054 |
6.36e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 86.65 E-value: 6.36e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 314 ELCQELNEIDH--LAQQLERHKEiVLETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKAd 391
Cdd:TIGR02168 217 ELKAELRELELalLVLRLEELRE-ELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALA- 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 392 dkenlelllnqleQEKQRLTEKTEnfEIKERELVLEIERMRLEYGIALGDKSPSRLDAFVKTLEDdrdyykrELEYLQKM 471
Cdd:TIGR02168 295 -------------NEISRLEQQKQ--ILRERLANLERQLEELEAQLEELESKLDELAEELAELEE-------KLEELKEE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 472 IKRRPSPSRRSPEKSEDLRLITRERDELqsmLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAKHNLVS 551
Cdd:TIGR02168 353 LESLEAELEELEAELEELESRLEELEEQ---LETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKK 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 552 QShvgedgDASLADFRRLMAEKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLEN 631
Cdd:TIGR02168 430 LE------EAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEG 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 632 ------ELKLKSSKLIQTSDDSSQL-----KAELCSLHLLNEQLQR-TVEDL-----------QHRF---------SLKK 679
Cdd:TIGR02168 504 fsegvkALLKNQSGLSGILGVLSELisvdeGYEAAIEAALGGRLQAvVVENLnaakkaiaflkQNELgrvtflpldSIKG 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 680 DELQSAQEEIVKLEEK----IDRLNQKSTSQDEAVNVLRSTISVLD--KEKDNLQETVDEKtEKIACLDDNLANKEKTIT 753
Cdd:TIGR02168 584 TEIQGNDREILKNIEGflgvAKDLVKFDPKLRKALSYLLGGVLVVDdlDNALELAKKLRPG-YRIVTLDGDLVRPGGVIT 662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 754 hlrltlseleSSTDQLKDLLSSRDREISSLRRQLDASHTEIAETgrvkEIALKENRRLQDDLATMTRENQAvssELEDAI 833
Cdd:TIGR02168 663 ----------GGSAKTNSSILERRREIEELEEKIEELEEKIAEL----EKALAELRKELEELEEELEQLRK---ELEELS 725
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 834 REKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKFRMLHTQAEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERV 913
Cdd:TIGR02168 726 RQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL 805
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 914 ELLEKEIQEHMIAHQAYESQISSITKNMSKLEEDIKREHQDKSSVLADLTSVRELCVKLEASKDLLSRQLASKSMDYEKV 993
Cdd:TIGR02168 806 DELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASL 885
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2024408242 994 LGELEDVKSEAELLKKQLSSERLTIQNLETLLATSRDKEFQNHLTSHEKDSEIQLLKDKLT 1054
Cdd:TIGR02168 886 EEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS 946
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
451-1103 |
3.80e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 74.33 E-value: 3.80e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 451 VKTLEDDRDYYKRELEYLQKMIKRRPSPSRRSPEKSEdlrlitRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNIL 530
Cdd:TIGR02169 200 LERLRREREKAERYQALLKEKREYEGYELLKEKEALE------RQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQL 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 531 YEQSQSELNRLRREAKHNLVSQSHvgeDGDASLADFRRLMAEKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFEL 610
Cdd:TIGR02169 274 LEELNKKIKDLGEEEQLRVKEKIG---ELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERK 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 611 ERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAELcslhllnEQLQRTVEDLQHRFSLKKDELQSAQEEIV 690
Cdd:TIGR02169 351 RRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKL-------EKLKREINELKRELDRLQEELQRLSEELA 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 691 KLEEKIDRLNQKSTSQDEAVNVLRSTISVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLK 770
Cdd:TIGR02169 424 DLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASE 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 771 DLLSSRDREISSLRRQLDASHTEIAETGRVKE-----IALKENRRLQ-----DDL----------------ATMTRENQA 824
Cdd:TIGR02169 504 ERVRGGRAVEEVLKASIQGVHGTVAQLGSVGEryataIEVAAGNRLNnvvveDDAvakeaiellkrrkagrATFLPLNKM 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 825 VSSELEDAIREKEEMKTRVHNYITEVSRFES---------LIASKEKENQELLEKFRML----------------HTQAE 879
Cdd:TIGR02169 584 RDERRDLSILSEDGVIGFAVDLVEFDPKYEPafkyvfgdtLVVEDIEAARRLMGKYRMVtlegelfeksgamtggSRAPR 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 880 DWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQEHMIAHQAYESQISSITKNMSKLEEDIKREHQDKSSVL 959
Cdd:TIGR02169 664 GGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELE 743
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 960 ADLTSVRELCVKLEASKDLLSRQLASKSMDYEKVLGELEDVK-----SEAELLKKQLSSERLTIQNLETLLATSRDKEFQ 1034
Cdd:TIGR02169 744 EDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEarlshSRIPEIQAELSKLEEEVSRIEARLREIEQKLNR 823
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2024408242 1035 NHLTSHEKDSEIQLLKDKLTLAEGKLSSHNREVSMLRSKVAQLQT---DYDVLKRQLTTERF----ERERAIQEMR 1103
Cdd:TIGR02169 824 LTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEeleELEAALRDLESRLGdlkkERDELEAQLR 899
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
203-977 |
5.00e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 70.48 E-value: 5.00e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 203 DNRIQELQSEVTQLQEklEISENGKKNYSKQVELRD--KEIERLmlaldggRSHEVISLESRSKSNEKLIAQLNLQVEYL 280
Cdd:TIGR02169 243 ERQLASLEEELEKLTE--EISELEKRLEEIEQLLEElnKKIKDL-------GEEEQLRVKEKIGELEAEIASLERSIAEK 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 281 QQSNKELENRIQDLldtkknvtsevvhlsnkNEELCQELNEIDHLAQQLERHKeIVLETADKEIGEAKKEIERKDSEIQD 360
Cdd:TIGR02169 314 ERELEDAEERLAKL-----------------EAEIDKLLAEIEELEREIEEER-KRRDKLTEEYAELKEELEDLRAELEE 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 361 LEETITRLKSELSSCRRQNERLSEELfgkaddkenlelllNQLEQEKQRLTEKTENFEIKERELVLEIERMRleygialg 440
Cdd:TIGR02169 376 VDKEFAETRDELKDYREKLEKLKREI--------------NELKRELDRLQEELQRLSEELADLNAAIAGIE-------- 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 441 dkspSRLDAFVKTLEDDRDYYKRELEYLQKMIKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRFEKHMIEIQSNVKLL 520
Cdd:TIGR02169 434 ----AKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGG 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 521 TAERDRLNILYEQ---SQSELNRLRRE-------AKHNLVSQSHVGEDGDA--SLADFRRLMAEKESLREKLKIQQEAAN 588
Cdd:TIGR02169 510 RAVEEVLKASIQGvhgTVAQLGSVGERyataievAAGNRLNNVVVEDDAVAkeAIELLKRRKAGRATFLPLNKMRDERRD 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 589 LEKSKMQHDISVLENNI---QQFE------------LERCELKSTISIlKERIKSLENEL------------KLKSSKLI 641
Cdd:TIGR02169 590 LSILSEDGVIGFAVDLVefdPKYEpafkyvfgdtlvVEDIEAARRLMG-KYRMVTLEGELfeksgamtggsrAPRGGILF 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 642 QTSD--DSSQLKAELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTISV 719
Cdd:TIGR02169 669 SRSEpaELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSS 748
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 720 LDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSEleSSTDQLKDLLSSRDREISSLRRQLDASHTEIAETGR 799
Cdd:TIGR02169 749 LEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH--SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTL 826
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 800 VKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKFRMLHTQAE 879
Cdd:TIGR02169 827 EKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIE 906
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 880 DWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQEHMIAHQAYEsQISSITKNMSKLEEDIKREHQDKSSVL 959
Cdd:TIGR02169 907 ELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQA-ELQRVEEEIRALEPVNMLAIQEYEEVL 985
|
810
....*....|....*...
gi 2024408242 960 ADLTSVRELCVKLEASKD 977
Cdd:TIGR02169 986 KRLDELKEKRAKLEEERK 1003
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
203-811 |
7.54e-12 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 69.66 E-value: 7.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 203 DNRIQELQSEVTQLQEKLEISENGKKNYSKQVELRD----------KEIERLMLALDGGRSHEVISLESRSKSNEKLIAQ 272
Cdd:TIGR04523 32 DTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEekinnsnnkiKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 273 LNLQVEYLQQSNKELENRIQDLLDTKKNVTSEVVHLSNKNEELCQELNEIDHLAQQLERHKeivletadKEIGEAKKEIE 352
Cdd:TIGR04523 112 IKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELE--------NELNLLEKEKL 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 353 RKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDKENLELLLNQLEQEKQRLTEKTENFEIKEREL-VLEIERM 431
Cdd:TIGR04523 184 NIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLnQLKDEQN 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 432 RLEYGIALGDKSPSRLDAFVKTLEDDRDYYKRELEYLQKmikrrPSPSRRSPEKSEDLRLITRERDELQSMLDRFEKHMI 511
Cdd:TIGR04523 264 KIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNN-----QKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIIS 338
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 512 EIQSNVKLLTAERDrlnilyeQSQSELNRLRREAKHNLVSQSHVGEDGDASLADFRRLMAEKESLREKLKIQQEAANLEK 591
Cdd:TIGR04523 339 QLNEQISQLKKELT-------NSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKD 411
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 592 SKmqhdISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDL 671
Cdd:TIGR04523 412 EQ----IKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQK 487
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 672 QHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTISVLDKEKDNLQETVDEKTE--KIACLDDNLANKE 749
Cdd:TIGR04523 488 QKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFelKKENLEKEIDEKN 567
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024408242 750 KTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQLDASHTEIAETGRVKEIALKENRRL 811
Cdd:TIGR04523 568 KEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKL 629
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
625-870 |
1.50e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.81 E-value: 1.50e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 625 RIKSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKST 704
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 705 SQDEAVNVLRSTISVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLR 784
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 785 RQLDASHTEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESLIASKEKEN 864
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
....*.
gi 2024408242 865 QELLEK 870
Cdd:COG1196 473 ALLEAA 478
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
308-1020 |
5.06e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 66.97 E-value: 5.06e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 308 LSNKNEELCQELNEIDHLAQQLErHKEIVLETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELF 387
Cdd:TIGR04523 28 ANKQDTEEKQLEKKLKTIKNELK-NKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLS 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 388 GKADDKENLELLLNQLEQEKQRLTEKTEnfEIKERELVLEIERMRLEYGIALGDKSPSRLDAFVKTLEDDRDYYKRELEY 467
Cdd:TIGR04523 107 KINSEIKNDKEQKNKLEVELNKLEKQKK--ENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLN 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 468 LQKMIKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAKH 547
Cdd:TIGR04523 185 IQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNK 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 548 NLVSQSHvgedgdasladfrrlmAEKESLREKLKIQQEAANLEKSKMQhdISVLENNIQQFELErcELKSTISILKERIK 627
Cdd:TIGR04523 265 IKKQLSE----------------KQKELEQNNKKIKELEKQLNQLKSE--ISDLNNQKEQDWNK--ELKSELKNQEKKLE 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 628 SLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQD 707
Cdd:TIGR04523 325 EIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQE 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 708 EAVNVLRSTISVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQL 787
Cdd:TIGR04523 405 KLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNL 484
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 788 DAshteiaetgRVKEIALKENrrlqdDLATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESLIASKEKEnqel 867
Cdd:TIGR04523 485 EQ---------KQKELKSKEK-----ELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDE---- 546
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 868 lekfrmlhtqaedweikahqaegesssirleLLSVDTDRRHlrervELLEKEIQEhmiahqayesqissitknmskLEED 947
Cdd:TIGR04523 547 -------------------------------LNKDDFELKK-----ENLEKEIDE---------------------KNKE 569
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024408242 948 IKREHQDKSSVLADLTSVRELCVKLEASKDLLSRQLASKSMDYEKVLGELEDVKSEaellKKQLSSERLTIQN 1020
Cdd:TIGR04523 570 IEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKE----NEKLSSIIKNIKS 638
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
563-1024 |
9.07e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 66.22 E-value: 9.07e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 563 LADFRRLMAEKESLREKLKIQQEAANL----------EKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENE 632
Cdd:PRK02224 215 LAELDEEIERYEEQREQARETRDEADEvleeheerreELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 633 LKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLnqkstsqdeavnv 712
Cdd:PRK02224 295 RDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEEL------------- 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 713 lRSTISVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTI-----------THLRLTLSELESSTDQLKDL---LSSRDR 778
Cdd:PRK02224 362 -REEAAELESELEEAREAVEDRREEIEELEEEIEELRERFgdapvdlgnaeDFLEELREERDELREREAELeatLRTARE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 779 EISSLRRQLDASH-----TEIAETGRVKEIALKENRR--LQDDLATMTRENQAVSSELE------DAIREKEEMKTRVHN 845
Cdd:PRK02224 441 RVEEAEALLEAGKcpecgQPVEGSPHVETIEEDRERVeeLEAELEDLEEEVEEVEERLEraedlvEAEDRIERLEERRED 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 846 YITEVSRFESLIASKEKENQELLEKFRMLHTQAEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKeIQEHMI 925
Cdd:PRK02224 521 LEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER-IRTLLA 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 926 AHQAYESQISSITKNMSKLEEdikREHQDKSSVLADLTSVRELCVKLEASKDLLSRQLASKSMDY-EKVLGELEDVKSEA 1004
Cdd:PRK02224 600 AIADAEDEIERLREKREALAE---LNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYlEQVEEKLDELREER 676
|
490 500
....*....|....*....|
gi 2024408242 1005 ELLKKQLSSERLTIQNLETL 1024
Cdd:PRK02224 677 DDLQAEIGAVENELEELEEL 696
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
314-856 |
4.02e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 64.29 E-value: 4.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 314 ELCQELNEIDHLAQQLERHKEIVLETADkEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGK---- 389
Cdd:PRK02224 210 GLESELAELDEEIERYEEQREQARETRD-EADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLrerl 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 390 ---ADDKENLELLLNQLEQEKQRLTEKTENFEIKERELVLEIERMRLEYGIALGDKSPSRLDAfvKTLEDDRDYYKRELE 466
Cdd:PRK02224 289 eelEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDA--DDLEERAEELREEAA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 467 YLQKMIKRRPSPSRRSPEKSEDLrlitreRDELQSMLDRFEKhmieiqsnvklLTAERDRLNILYEQSQSELNRLRREAK 546
Cdd:PRK02224 367 ELESELEEAREAVEDRREEIEEL------EEEIEELRERFGD-----------APVDLGNAEDFLEELREERDELREREA 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 547 hnlvsqshvgeDGDASLADFRRLMAEKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERI 626
Cdd:PRK02224 430 -----------ELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERL 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 627 KSLEnelklksskliqtsdDSSQLKAELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQ 706
Cdd:PRK02224 499 ERAE---------------DLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEA 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 707 DEAVNVLRSTISVLDKEKDNLQETVdEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQ 786
Cdd:PRK02224 564 EEEAEEAREEVAELNSKLAELKERI-ESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAE 642
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024408242 787 LDASHTEIAETGRVKEIALKENrrLQDDLATMTRENQAVSSE---LEDAIREKEEMKTRVHNYITEVSRFESL 856
Cdd:PRK02224 643 FDEARIEEAREDKERAEEYLEQ--VEEKLDELREERDDLQAEigaVENELEELEELRERREALENRVEALEAL 713
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
578-1092 |
5.01e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.92 E-value: 5.01e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 578 EKLKIQQEAAN----LEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAE 653
Cdd:TIGR02168 203 KSLERQAEKAErykeLKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEE 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 654 LCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTISVLDKEKDNLQETVDE 733
Cdd:TIGR02168 283 IEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 734 KTEKIACLD--------------DNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRR-----QLDASHTEI 794
Cdd:TIGR02168 363 LEAELEELEsrleeleeqletlrSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKkleeaELKELQAEL 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 795 AETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESL--IASKEKENQELLEKFR 872
Cdd:TIGR02168 443 EELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFseGVKALLKNQSGLSGIL 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 873 MLHTQ----AEDWE----------------------IKAHQAEGESSSIRLELLSVDTDR-RHLRERVELLEKEIQEHMI 925
Cdd:TIGR02168 523 GVLSElisvDEGYEaaieaalggrlqavvvenlnaaKKAIAFLKQNELGRVTFLPLDSIKgTEIQGNDREILKNIEGFLG 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 926 AHQAYESQISSITKNMSKL-------------EEDIKREHQDKSSVLADLTSVRE---------------LCVK-----L 972
Cdd:TIGR02168 603 VAKDLVKFDPKLRKALSYLlggvlvvddldnaLELAKKLRPGYRIVTLDGDLVRPggvitggsaktnssiLERRreieeL 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 973 EASKDLLSRQLASKSMDYEKVLGELEDVKSEAELLKKQLSSERLTIQNLETLLATSRDKEFQNHLTSHEKDSEIQLLKDK 1052
Cdd:TIGR02168 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE 762
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 2024408242 1053 LTLAEGKLSSHNREVSMLRSKVAQLQTDYDVLKRQLTTER 1092
Cdd:TIGR02168 763 IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR 802
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
344-732 |
1.07e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 1.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 344 IGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDKENLELLLNQLEQEKQRLTEKTENFEikERE 423
Cdd:TIGR02168 672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE--ERI 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 424 LVLEIERMRLEYGIALGDKSPSRLDAFVKTLEDDRDYYKRELEYLQkmikrrpspsrrspeksEDLRLITRERDELQSML 503
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK-----------------EELKALREALDELRAEL 812
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 504 DRFEKHMIEIQSNVKLLTAERDRLnilyEQSQSELNRLRREAKHNLVSQSHVGEDGDASLADFRRLMAEKESLREKLKIQ 583
Cdd:TIGR02168 813 TLLNEEAANLRERLESLERRIAAT----ERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEA 888
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 584 QEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELklksskliqtsddsSQLKAELcslhllNEQ 663
Cdd:TIGR02168 889 LALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRI--------------DNLQERL------SEE 948
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 664 LQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDR---------------------LNQKSTSQDEAVNVLRSTISVLDK 722
Cdd:TIGR02168 949 YSLTLEEAEALENKIEDDEEEARRRLKRLENKIKElgpvnlaaieeyeelkerydfLTAQKEDLTEAKETLEEAIEEIDR 1028
|
410
....*....|.
gi 2024408242 723 E-KDNLQETVD 732
Cdd:TIGR02168 1029 EaRERFKDTFD 1039
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
259-1024 |
1.09e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.78 E-value: 1.09e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 259 LESRSKSNEKLIAQLNLQVEYLQQSNKELENRIQDLLDTKKNVTSEvvhLSNKNEELCQELNEIDHLAQQLERhKEIVLE 338
Cdd:TIGR02169 200 LERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQ---LASLEEELEKLTEEISELEKRLEE-IEQLLE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 339 TADKEIGEA--------KKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDKENLELLLNQLEQEKQRL 410
Cdd:TIGR02169 276 ELNKKIKDLgeeeqlrvKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKL 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 411 TEktenfEIKERELVLEIERMRLEYGIALGDKSPSRLDAFVKTLEDdrdyYKRELEYLQKMIKRRPSPSRRSPEKSEDLR 490
Cdd:TIGR02169 356 TE-----EYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEK----LKREINELKRELDRLQEELQRLSEELADLN 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 491 L--------ITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNIL---YEQSQSELNRLRREAKHNLVSQSHVGEDG 559
Cdd:TIGR02169 427 AaiagieakINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLkeeYDRVEKELSKLQRELAEAEAQARASEERV 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 560 ----------DASLADFRRLMAEKESLREKL--------------------------------------------KIQQE 585
Cdd:TIGR02169 507 rggraveevlKASIQGVHGTVAQLGSVGERYataievaagnrlnnvvveddavakeaiellkrrkagratflplnKMRDE 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 586 AANLEKSKMQHDISVLENNI---QQFE------------LERCELKSTISIlKERIKSLENELKLKSSKLIQTSDDSSql 650
Cdd:TIGR02169 587 RRDLSILSEDGVIGFAVDLVefdPKYEpafkyvfgdtlvVEDIEAARRLMG-KYRMVTLEGELFEKSGAMTGGSRAPR-- 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 651 kaelcSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTISVLDKEKDNLQET 730
Cdd:TIGR02169 664 -----GGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKER 738
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 731 VDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSS-----RDREISSLRRQLDASHTEIAE-TGRVKEIA 804
Cdd:TIGR02169 739 LEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDlearlSHSRIPEIQAELSKLEEEVSRiEARLREIE 818
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 805 LKENRRLQdDLATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKFRMLHTqaedwEIK 884
Cdd:TIGR02169 819 QKLNRLTL-EKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKK-----ERD 892
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 885 AHQAEGESSSIRLELLSVDTDRrhLRERVELLEKEIqehmiahQAYESQISSItknmskleEDIKREHQDKSSVLADLTS 964
Cdd:TIGR02169 893 ELEAQLRELERKIEELEAQIEK--KRKRLSELKAKL-------EALEEELSEI--------EDPKGEDEEIPEEELSLED 955
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 965 VRELCVKLEASKDLLSRQLASKSMDYEKVLGELEDVKSEAELLKKQLSSERLTIQNLETL 1024
Cdd:TIGR02169 956 VQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
199-699 |
1.20e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.65 E-value: 1.20e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 199 LQVADNRIQELQSEVTQLQEKLEISENGKKNYSKQVELRDKEIERLMLALDGGRShEVISLESRSKSNEKLIAQLNLQVE 278
Cdd:COG1196 241 LEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA-ELARLEQDIARLEERRRELEERLE 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 279 YLQQSNKELENRIQDLLDTKKNVTSEVVHLSNKNEELCQELNEIDHLAQQLER---HKEIVLETADKEIGEAKKEIERKD 355
Cdd:COG1196 320 ELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAelaEAEEELEELAEELLEALRAAAELA 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 356 SEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDKENLELLLNQLEQEKQRLTEKTENFEIKERELVLEIERMRLEY 435
Cdd:COG1196 400 AQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAAL 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 436 GIALGDKSPSR-LDAFVKTLEDDRDYYKRELEYLQKMIKRRPSPSRRSPEKSEDLRLITRERDELQSML-------DRFE 507
Cdd:COG1196 480 AELLEELAEAAaRLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALqnivvedDEVA 559
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 508 KHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLR----------------REAKHNLVSQSHVGEDGDASLADFRRLMA 571
Cdd:COG1196 560 AAAIEYLKAAKAGRATFLPLDKIRARAALAAALARgaigaavdlvasdlreADARYYVLGDTLLGRTLVAARLEAALRRA 639
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 572 EKESLREKLK------IQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSD 645
Cdd:COG1196 640 VTLAGRLREVtlegegGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEE 719
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 646 DSSQLKAELCSLHLLNEQLQRTVEDLQHRFSLKKDE------LQSAQEEIVKLEEKIDRL 699
Cdd:COG1196 720 ELEEEALEEQLEAEREELLEELLEEEELLEEEALEElpeppdLEELERELERLEREIEAL 779
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
198-822 |
3.91e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 61.29 E-value: 3.91e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 198 LLQVADNRIQELQSE----VTQLQEKLEISENGKKNYSKQVELRDKEierlmlaldgGRSHEVISLESRSKSnEKLIAQL 273
Cdd:pfam15921 261 LLQQHQDRIEQLISEheveITGLTEKASSARSQANSIQSQLEIIQEQ----------ARNQNSMYMRQLSDL-ESTVSQL 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 274 NLQveyLQQSNKELENRIQDLLDTKKNVTSEVVHLSNKNEELCQELNEIDHLAQQL-----ERHKEIVLETA------DK 342
Cdd:pfam15921 330 RSE---LREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLladlhKREKELSLEKEqnkrlwDR 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 343 EIGEA------KKEIERKDSEIQDLEETITRLKSElssCRRQNERLSEELFGKADDKENLELLLNQLEQEK-------QR 409
Cdd:pfam15921 407 DTGNSitidhlRRELDDRNMEVQRLEALLKAMKSE---CQGQMERQMAAIQGKNESLEKVSSLTAQLESTKemlrkvvEE 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 410 LTEKTENFEIKERELV-LEIERMRLEYGIALGDKSPSRLDAFVKTLEDDRDYYKRELEYLQKMIKRRPSPSRRSPEKSED 488
Cdd:pfam15921 484 LTAKKMTLESSERTVSdLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKV 563
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 489 LRLITRERDELQSMLDR---------FEKHMIEIQSNVKLLtaERDRLNILYEQSQSELNRLRREAKHNLVSQSHVGEDG 559
Cdd:pfam15921 564 IEILRQQIENMTQLVGQhgrtagamqVEKAQLEKEINDRRL--ELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAG 641
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 560 DASLADFRRLMAEKESLREKLKIQQEAANleksKMQHDISVLENNiqqFELERCELKSTISILKERIKSLENELKlkssk 639
Cdd:pfam15921 642 SERLRAVKDIKQERDQLLNEVKTSRNELN----SLSEDYEVLKRN---FRNKSEEMETTTNKLKMQLKSAQSELE----- 709
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 640 liqtsddssQLKAELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTISV 719
Cdd:pfam15921 710 ---------QTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELST 780
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 720 LDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELEsstdqlkDLLSSRDREISSLRRQLDASHTEIAETGR 799
Cdd:pfam15921 781 VATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQ-------DIIQRQEQESVRLKLQHTLDVKELQGPGY 853
|
650 660
....*....|....*....|...
gi 2024408242 800 VKEIALKEnRRLQDDLATMTREN 822
Cdd:pfam15921 854 TSNSSMKP-RLLQPASFTRTHSN 875
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
317-922 |
4.47e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.72 E-value: 4.47e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 317 QELNEIDHLAQQLE-RHKEIVLETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDKEN 395
Cdd:COG1196 220 EELKELEAELLLLKlRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 396 LELLLNQLEQEKQRLTEKTENFEIKERELVLEIERMRLEygialgdkspsrldafVKTLEDDRDYYKRELEYLQKMIKRR 475
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEE----------------LEELEEELEEAEEELEEAEAELAEA 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 476 PSPSRRSPEKSEDLRlitRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAKHNLVSQSHV 555
Cdd:COG1196 364 EEALLEAEAELAEAE---EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 556 GEDGDASLADFRRLMAEKESLREKLKIQQEAANLekskmqhdisvLENNIQQFELERCELKSTISILKERIKSLENELK- 634
Cdd:COG1196 441 EEALEEAAEEEAELEEEEEALLELLAELLEEAAL-----------LEAALAELLEELAEAAARLLLLLEAEADYEGFLEg 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 635 LKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLR 714
Cdd:COG1196 510 VKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALA 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 715 STISVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQldashtEI 794
Cdd:COG1196 590 AALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGS------LT 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 795 AETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRvhnyitevsrfesLIASKEKENQELLEKFRML 874
Cdd:COG1196 664 GGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAE-------------AEEERLEEELEEEALEEQL 730
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 2024408242 875 HTQAEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQE 922
Cdd:COG1196 731 EAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
525-1030 |
4.75e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 60.90 E-value: 4.75e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 525 DRLNILYEQSQSELNRLRREAK---HNLVSQSHVGEDGDASLADFRRlmAEKESLREKLKIQQEAANLEKSKMQHDISVL 601
Cdd:pfam15921 245 DQLEALKSESQNKIELLLQQHQdriEQLISEHEVEITGLTEKASSAR--SQANSIQSQLEIIQEQARNQNSMYMRQLSDL 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 602 ENNIQQFeleRCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAELCSLhllNEQLQRTVEDLQHR---FSLK 678
Cdd:pfam15921 323 ESTVSQL---RSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNL---DDQLQKLLADLHKRekeLSLE 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 679 KD---------------------ELQSAQEEIVKLEEKIDRLNQKSTSQ-----------DEAVNVLRSTISVLDKEKDN 726
Cdd:pfam15921 397 KEqnkrlwdrdtgnsitidhlrrELDDRNMEVQRLEALLKAMKSECQGQmerqmaaiqgkNESLEKVSSLTAQLESTKEM 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 727 LQETVDEKTEK----------IACLDDNLANKEKTI-------THLR----LTLSELE-------------SSTDQLKDL 772
Cdd:pfam15921 477 LRKVVEELTAKkmtlessertVSDLTASLQEKERAIeatnaeiTKLRsrvdLKLQELQhlknegdhlrnvqTECEALKLQ 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 773 LSSRDREISSLRRQLDASHTEIAETGRV-----------------KEIALKENRRLQDDLATMTRENQAVSSELE----- 830
Cdd:pfam15921 557 MAEKDKVIEILRQQIENMTQLVGQHGRTagamqvekaqlekeindRRLELQEFKILKDKKDAKIRELEARVSDLElekvk 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 831 ------DAIREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKFR----MLHTQAEDWEIKAHQAEGESSSIRLELL 900
Cdd:pfam15921 637 lvnagsERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRnkseEMETTTNKLKMQLKSAQSELEQTRNTLK 716
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 901 SVDTDRRHLRERVELLEKEIQEHMIAHQAYESQISSITKNMSKLEEDIKREHQDKSSVLADLTSVrelcvkleaskdlls 980
Cdd:pfam15921 717 SMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTV--------------- 781
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 2024408242 981 rqlaskSMDYEKVLGELEDVKSEAELLKKQLSSERLTIQNLETLLATSRD 1030
Cdd:pfam15921 782 ------ATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQD 825
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
326-950 |
8.30e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.95 E-value: 8.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 326 AQQLERHKEIVLETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELfgkaddkenlelllnqlEQ 405
Cdd:COG1196 209 AEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAEL-----------------EE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 406 EKQRLTEKTENFEIK-ERELVLEIERMRLEYGIALgdkspsrldafvktLEDDRDYYKRELEYLQKmikrrpspsrRSPE 484
Cdd:COG1196 272 LRLELEELELELEEAqAEEYELLAELARLEQDIAR--------------LEERRRELEERLEELEE----------ELAE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 485 KSEDLRLITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAkhnlvsqshvgedgdaslA 564
Cdd:COG1196 328 LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL------------------L 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 565 DFRRLMAEKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKlksskliQTS 644
Cdd:COG1196 390 EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE-------ALL 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 645 DDSSQLKAELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQdeAVNVLRSTISVLDKEK 724
Cdd:COG1196 463 ELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAG--AVAVLIGVEAAYEAAL 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 725 DN------LQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRD--REISSLRRQLDASHTEIAE 796
Cdd:COG1196 541 EAalaaalQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAavDLVASDLREADARYYVLGD 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 797 TGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRVhnyITEVSRFESLIASKEKENQELLEKFRMLHT 876
Cdd:COG1196 621 TLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSR---RELLAALLEAEAELEELAERLAEEELELEE 697
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024408242 877 QAEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQEHMIAHQAYESQISSITKNMSKLEEDIKR 950
Cdd:COG1196 698 ALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELER 771
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
777-1098 |
1.75e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.93 E-value: 1.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 777 DREISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTR-----------ENQAVSSELEDAIREKEEMKTRVHN 845
Cdd:TIGR02169 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERyqallkekreyEGYELLKEKEALERQKEAIERQLAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 846 YITEVSRFESLIASKEKENQELLEKFRMLHTQAEDweikahQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQEHMI 925
Cdd:TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKD------LGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 926 AHQAYESQISSITKNMSKLEEDIKREHQDKSSV---LADLTSVRELCVKLEASKDLLSRQLASKSMDYEKvlgELEDVKS 1002
Cdd:TIGR02169 323 RLAKLEAEIDKLLAEIEELEREIEEERKRRDKLteeYAELKEELEDLRAELEEVDKEFAETRDELKDYRE---KLEKLKR 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 1003 EAELLKKQLSSERLTIQNLETLLATSRDKEFQNHLTSHEKDSEIQLLKDKLTLAEGKLSSHNREVSMLRSKVAQLQTDYD 1082
Cdd:TIGR02169 400 EINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYD 479
|
330
....*....|....*.
gi 2024408242 1083 VLKRQLTTERFERERA 1098
Cdd:TIGR02169 480 RVEKELSKLQRELAEA 495
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
322-1101 |
2.32e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.54 E-value: 2.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 322 IDHLA--QQLERHKEIVLEtadkEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSE----ELFGKADDKEN 395
Cdd:TIGR02169 159 IDEIAgvAEFDRKKEKALE----ELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEkreyEGYELLKEKEA 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 396 LELLLNQLEQEKQRLTEKTENFEIKERELVLEIERMRLEYgialgdkspSRLDAFVKTL-EDDRDYYKRELEYLQKMIKR 474
Cdd:TIGR02169 235 LERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLL---------EELNKKIKDLgEEEQLRVKEKIGELEAEIAS 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 475 RPSPSRRSPEKSEDLRlitRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAkhnlvsqsh 554
Cdd:TIGR02169 306 LERSIAEKERELEDAE---ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAEL--------- 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 555 vgEDGDaslADFRRLMAEKESLREKLkiqqEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELK 634
Cdd:TIGR02169 374 --EEVD---KEFAETRDELKDYREKL----EKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKE 444
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 635 LKSSKLIQTSDDSSQLKAELcslhllnEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLR 714
Cdd:TIGR02169 445 DKALEIKKQEWKLEQLAADL-------SKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLK 517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 715 S-------TISVLDKEKDNLQ----------------ETVDEKTEKIACLDDNLA--------NKEKTiTHLRLTLSELE 763
Cdd:TIGR02169 518 AsiqgvhgTVAQLGSVGERYAtaievaagnrlnnvvvEDDAVAKEAIELLKRRKAgratflplNKMRD-ERRDLSILSED 596
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 764 SSTDQLKDLLSSRDR----------------EISSLRRQLDASHT-----EIAE-----TG--RVKEIALKENRRLQDDL 815
Cdd:TIGR02169 597 GVIGFAVDLVEFDPKyepafkyvfgdtlvveDIEAARRLMGKYRMvtlegELFEksgamTGgsRAPRGGILFSRSEPAEL 676
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 816 ATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKFRMLHTQAEDWEIKAHQAEGESSSI 895
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENV 756
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 896 RLELLSVDTDRRHLRERVELLEKEIQ--EHMIAHQ----------AYESQISSITKNMSKLEEDIKREHQDKSSVLADLT 963
Cdd:TIGR02169 757 KSELKELEARIEELEEDLHKLEEALNdlEARLSHSripeiqaelsKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQ 836
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 964 SVRELCVKLEASKDLLSRQLASKSMDYEKVLGELEDVKSEAELLKKQLSSERLTIQNLETLLATSRDKEFQNHLTSHEKD 1043
Cdd:TIGR02169 837 ELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKR 916
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024408242 1044 SEIQLLKDKLTLAEGKLSSHNREVSMLRSKVAQLQTDYDVlkrQLTTERFERE---------RAIQE 1101
Cdd:TIGR02169 917 KRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDV---QAELQRVEEEiralepvnmLAIQE 980
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
860-1115 |
4.73e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.64 E-value: 4.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 860 KEKENQELLEKFRMLHTQAEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQEhmiAHQAYESQISSItk 939
Cdd:COG1196 223 KELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEE---AQAEEYELLAEL-- 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 940 nmSKLEEDIKREHQDKSSVLADLTSVRELCVKLEASKDLLSRQLASKSMDYEKVLGELEDVKSEAELLKKQLSSERLTIQ 1019
Cdd:COG1196 298 --ARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 1020 NLETLLATSRDKEFQNHLTSHEKDSEIQLLKDKLTLAEGKLSSHNREVSMLRSKVAQLQTDYDVLKRQLTTERFERERAI 1099
Cdd:COG1196 376 EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE 455
|
250
....*....|....*.
gi 2024408242 1100 QEMRRHGLSTSSLRAS 1115
Cdd:COG1196 456 EEEEALLELLAELLEE 471
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
461-843 |
5.93e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 5.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 461 YKRELEYLQKMIKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNR 540
Cdd:TIGR02169 669 SRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSS 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 541 LRREAkhnlvsqshvgEDGDASLADfrrLMAEKESLREKL-KIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTI 619
Cdd:TIGR02169 749 LEQEI-----------ENVKSELKE---LEARIEELEEDLhKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARL 814
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 620 SILKERIKSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRL 699
Cdd:TIGR02169 815 REIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDEL 894
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 700 NQKSTSQDEAVNVLRSTISVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTithlrltlSELESSTDQLKDLLSSRDRE 779
Cdd:TIGR02169 895 EAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEI--------PEEELSLEDVQAELQRVEEE 966
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024408242 780 ISSLRrqlDASHTEIAETgrvkEIALKENRRLQDDLATMTREnqavSSELEDAIREKEEMKTRV 843
Cdd:TIGR02169 967 IRALE---PVNMLAIQEY----EEVLKRLDELKEKRAKLEEE----RKAILERIEEYEKKKREV 1019
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
576-1105 |
7.83e-08 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 56.65 E-value: 7.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 576 LREKLKIQQEAANLEKSKMQHDISVLEN---NIQQFELERCELKSTISILKERIKSL--ENELKLKSSKLIQTSDD--SS 648
Cdd:pfam05483 273 LEEKTKLQDENLKELIEKKDHLTKELEDikmSLQRSMSTQKALEEDLQIATKTICQLteEKEAQMEELNKAKAAHSfvVT 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 649 QLKAELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEivkLEEKIDRLNQKSTSQDEAVNVLRSTISVLDkEKDNLQ 728
Cdd:pfam05483 353 EFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSE---LEEMTKFKNNKEVELEELKKILAEDEKLLD-EKKQFE 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 729 ETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKdllssrdREISSLRRQLDASHTEIAETGRVKEIALKEN 808
Cdd:pfam05483 429 KIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYL-------KEVEDLKTELEKEKLKNIELTAHCDKLLLEN 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 809 RRLQDDLATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESLIaskEKENQELLEKFRMLHTQAEDWEIKAHQA 888
Cdd:pfam05483 502 KELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDEL---ESVREEFIQKGDEVKCKLDKSEENARSI 578
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 889 EGESSSIRLELLSVDTDRRHLRERVELLEKEIQEHMIAHQAYESQISSITKNMSKLEEDIKRehqdkssVLADLTSVREl 968
Cdd:pfam05483 579 EYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNK-------LELELASAKQ- 650
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 969 cvKLEASKDLLSRQLASKSMDYEKVLGELEDVKSEA-ELLKKQLSSERLTIQNLETLLATSRDKEFQNHLTSHEKDSEIQ 1047
Cdd:pfam05483 651 --KFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIAdEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELG 728
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*...
gi 2024408242 1048 LLKDKLTLAEGKLSSHNREVSMLRSKVAQLqtdydvlKRQLTTERFERERAIQEMRRH 1105
Cdd:pfam05483 729 LYKNKEQEQSSAKAALEIELSNIKAELLSL-------KKQLEIEKEEKEKLKMEAKEN 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
195-842 |
3.88e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.56 E-value: 3.88e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 195 IADLLQVADNRIQELQSEVTQLQEKLEISENGKKnysKQVELRDKEIERLMLALDGgRSHEVISLESRSKSNEKLIAQLN 274
Cdd:COG1196 191 LEDILGELERQLEPLERQAEKAERYRELKEELKE---LEAELLLLKLRELEAELEE-LEAELEELEAELEELEAELAELE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 275 LQVEYLQQSNKELENRIQDLLDTKKNVTSEVVHLSNKNEELCQELN----EIDHLAQQLERHK------EIVLETADKEI 344
Cdd:COG1196 267 AELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRReleeRLEELEEELAELEeeleelEEELEELEEEL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 345 GEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDKENLELLLNQLEQEKQRLTEKTENFEIKEREL 424
Cdd:COG1196 347 EEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEEL 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 425 ---VLEIERMRLEYGIALGDKSPSRLDAFVKTLEDDRDYYKRELEYLQKMIKRRPSPSRRSPEKSEDLRLITRERDELQS 501
Cdd:COG1196 427 eeaLAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGF 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 502 MLDRFEKHMIEIQSNVKLLTAERDRLNILYEqsQSELNRLRREAKHNLVSQSHVGEDGDASLADFRRLMAEKESLReklk 581
Cdd:COG1196 507 LEGVKAALLLAGLRGLAGAVAVLIGVEAAYE--AALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLD---- 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 582 iQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTsddssqLKAELCSLHLLN 661
Cdd:COG1196 581 -KIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVT------LAGRLREVTLEG 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 662 EQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTISVLDKEKDNLQETVDEKTEKiacl 741
Cdd:COG1196 654 EGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQ---- 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 742 ddnlanKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTRE 821
Cdd:COG1196 730 ------LEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGPVNLLAIEEYEELEERYDFLSEQ 803
|
650 660
....*....|....*....|....*
gi 2024408242 822 NQAVSSE---LEDAIRE-KEEMKTR 842
Cdd:COG1196 804 REDLEEAretLEEAIEEiDRETRER 828
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
313-820 |
8.54e-07 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 53.37 E-value: 8.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 313 EELCQELNEIDHLAQQLERHKEIV--LETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKA 390
Cdd:PRK01156 152 KKILDEILEINSLERNYDKLKDVIdmLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAM 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 391 DDKENLELLLNQLEQEKQrlTEKTENFEIKERELVLEIERMRLEYGIALGDKSPSRL-DAFVKTLEDDRDY--YKRELEY 467
Cdd:PRK01156 232 DDYNNLKSALNELSSLED--MKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIInDPVYKNRNYINDYfkYKNDIEN 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 468 LQKMIKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRFE--KHMI----EIQSNVKLLTAERDRLNILYEQSQSELNRL 541
Cdd:PRK01156 310 KKQILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKSRYDdlNNQIleleGYEMDYNSYLKSIESLKKKIEEYSKNIERM 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 542 RREAKHNLVSQSHVGEDGDASLADFRR-----------LMAEKESLREKLKIQQEAANL--------------------- 589
Cdd:PRK01156 390 SAFISEILKIQEIDPDAIKKELNEINVklqdisskvssLNQRIRALRENLDELSRNMEMlngqsvcpvcgttlgeeksnh 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 590 -------EKSKMQHDISVLENNIQQFELERCELKSTISIL-KERIKSLENELKLKSSKLIQTSDD-------------SS 648
Cdd:PRK01156 470 iinhyneKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLeSEEINKSINEYNKIESARADLEDIkikinelkdkhdkYE 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 649 QLKAELCSLHLLNEQLQRT--VEDLQHRFSLKKDELQSAQEEIVK-LEEKIDRLNQKSTSQDEAVNVLRSTISVLDKEKD 725
Cdd:PRK01156 550 EIKNRYKSLKLEDLDSKRTswLNALAVISLIDIETNRSRSNEIKKqLNDLESRLQEIEIGFPDDKSYIDKSIREIENEAN 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 726 NLQETVDEKTEKIACLDDnlanKEKTITHLRLTLSELESSTDQLKDL---LSSRDREISSLRRQLDASHTEIAETGRVKE 802
Cdd:PRK01156 630 NLNNKYNEIQENKILIEK----LRGKIDNYKKQIAEIDSIIPDLKEItsrINDIEDNLKKSRKALDDAKANRARLESTIE 705
|
570
....*....|....*...
gi 2024408242 803 IALKENRRLQDDLATMTR 820
Cdd:PRK01156 706 ILRTRINELSDRINDINE 723
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
196-803 |
1.67e-06 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 52.60 E-value: 1.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 196 ADLLQVADNRIQELQSEVTQLQEKLEISENGKKNYSKQVElRDKEIERLMLaldggRSHEVISLESRSKSNEKLIAQLNL 275
Cdd:PRK01156 168 YDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIA-DDEKSHSITL-----KEIERLSIEYNNAMDDYNNLKSAL 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 276 QVeylQQSNKELENRIQDLLDTKKNVTSEVVHLSNKNEELCQELNEIDHLAQQLERHKEIVLETADKEIGEAKKEIERKD 355
Cdd:PRK01156 242 NE---LSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNID 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 356 SEIQDLEETITRLkSELSSCRRQNERLSEELfgkaDDKENLELLLNQLEQEKQRLTEKTENFEIKERELVLEIERMRLEY 435
Cdd:PRK01156 319 AEINKYHAIIKKL-SVLQKDYNDYIKKKSRY----DDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFI 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 436 GIALGDK--SPSRLDAFVKTLEDDRDYYKRELEYLQKMIKRRPSPSRRSPEKSEDLR---------------LITRERDE 498
Cdd:PRK01156 394 SEILKIQeiDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNgqsvcpvcgttlgeeKSNHIINH 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 499 LQSMLDRFEKHMIEIQSNVKLLTAERdrlnilyEQSQSELNRLRREAKHNLVSQSHVGEDGDASLADFRRLMAEkesLRE 578
Cdd:PRK01156 474 YNEKKSRLEEKIREIEIEVKDIDEKI-------VDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKINE---LKD 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 579 KLKIQQEAANLEKSKmqhDISVLENNIQQFeLERCELKSTISIlkERIKSLENElklKSSKLIQTSDDSSQLKAELCSLH 658
Cdd:PRK01156 544 KHDKYEEIKNRYKSL---KLEDLDSKRTSW-LNALAVISLIDI--ETNRSRSNE---IKKQLNDLESRLQEIEIGFPDDK 614
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 659 LLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTsqdeavnvlrstisvldkEKDNLQETVDEKTEKI 738
Cdd:PRK01156 615 SYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIA------------------EIDSIIPDLKEITSRI 676
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024408242 739 ACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQLDASHTEIAETGRVKEI 803
Cdd:PRK01156 677 NDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKKIKKAIGDLKRL 741
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
452-1012 |
1.83e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.37 E-value: 1.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 452 KTLEDDRDYYKRELEYLQKMIKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILY 531
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 532 EQSQSELNRLR---------REAKHNLVSQSHVGEDGDASLADFRRLMAEKESLRE-KLKIQQEAANLEK--SKMQHDIS 599
Cdd:PRK03918 245 KELESLEGSKRkleekirelEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEfYEEYLDELREIEKrlSRLEEEIN 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 600 VLENNIQQFElercELKSTISILKERIKSLENELKlKSSKLIQTSDDSSQLKAELCSLHllNEQLQRTVEDLQHRFSLKK 679
Cdd:PRK03918 325 GIEERIKELE----EKEERLEELKKKLKELEKRLE-ELEERHELYEEAKAKKEELERLK--KRLTGLTPEKLEKELEELE 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 680 DELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTISVLDKEKDNLQEtvDEKTEKIACLDDNLANKEKTITHLRLTL 759
Cdd:PRK03918 398 KAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTE--EHRKELLEEYTAELKRIEKELKEIEEKE 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 760 SELESSTDQLKDLLsSRDREISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEM 839
Cdd:PRK03918 476 RKLRKELRELEKVL-KKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEEL 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 840 KTRVHNYITEVSRFESLIASKEKENQEL-LEKFRMLHTQAEDWEiKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEK 918
Cdd:PRK03918 555 KKKLAELEKKLDELEEELAELLKELEELgFESVEELEERLKELE-PFYNEYLELKDAEKELEREEKELKKLEEELDKAFE 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 919 EIQEHMIAHQAYESQISSITKNMSKLE-EDIKREHQDKSSVLADLTSvrelcvKLEASKDLLsRQLASKSMDYEKVLGEL 997
Cdd:PRK03918 634 ELAETEKRLEELRKELEELEKKYSEEEyEELREEYLELSRELAGLRA------ELEELEKRR-EEIKKTLEKLKEELEER 706
|
570
....*....|....*
gi 2024408242 998 EDVKSEAELLKKQLS 1012
Cdd:PRK03918 707 EKAKKELEKLEKALE 721
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
769-1101 |
2.08e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.25 E-value: 2.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 769 LKDLLSSRDREISSLRRQLDA--SHTEIAETGRVKEI--ALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTrvh 844
Cdd:COG1196 191 LEDILGELERQLEPLERQAEKaeRYRELKEELKELEAelLLLKLRELEAELEELEAELEELEAELEELEAELAELEA--- 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 845 nyitEVSRFESLIASKEKENQELLEKFRMLHTQAEDWEikahqaegesssirlellsvdTDRRHLRERVELLEKEIQEhm 924
Cdd:COG1196 268 ----ELEELRLELEELELELEEAQAEEYELLAELARLE---------------------QDIARLEERRRELEERLEE-- 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 925 iahqaYESQISSITKNMSKLEEDIKREHQDKSSVLADLTSVRELCVKLEASKDLLSRQLASKSMDYEKVLGELEDVKSEA 1004
Cdd:COG1196 321 -----LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAA 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 1005 ELLKKQLSSERLTIQNLETLLATSRDKEFQNHLTSHEKDSEIQLLKDKLTLAEGKLSSHNREVSMLRSKVAQLQTDYDVL 1084
Cdd:COG1196 396 AELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALL 475
|
330
....*....|....*..
gi 2024408242 1085 KRQLTTERFERERAIQE 1101
Cdd:COG1196 476 EAALAELLEELAEAAAR 492
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
662-870 |
2.21e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 2.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 662 EQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTISVLDKEKDNLQETVDEKTEKIACL 741
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 742 DDNLAN------KEKTITHLRLTLS-----ELESSTDQLKDLLSSRDREISSLRRQ---LDASHTEIAETGRVKEIALKE 807
Cdd:COG4942 103 KEELAEllralyRLGRQPPLALLLSpedflDAVRRLQYLKYLAPARREQAEELRADlaeLAALRAELEAERAELEALLAE 182
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024408242 808 NRRLQDDLATMTRENQAVSSELEdaiREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEK 870
Cdd:COG4942 183 LEEERAALEALKAERQKLLARLE---KELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
678-870 |
3.29e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 50.98 E-value: 3.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 678 KKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTISVLDKEKDNLQETVDEKTEKIACLDDNLANkektitHLRl 757
Cdd:COG3883 21 KQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGE------RAR- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 758 TLSELESSTDQLKDLLSSRD-----REISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDA 832
Cdd:COG3883 94 ALYRSGGSVSYLDVLLGSESfsdflDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAEL 173
|
170 180 190
....*....|....*....|....*....|....*...
gi 2024408242 833 IREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEK 870
Cdd:COG3883 174 EAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
578-1096 |
3.61e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.17 E-value: 3.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 578 EKLKIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAELCSL 657
Cdd:TIGR04523 78 KILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKL 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 658 HLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKST---SQDEAVNVLRSTISVLDKEKDNLQETVDEK 734
Cdd:TIGR04523 158 NNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSnlkKKIQKNKSLESQISELKKQNNQLKDNIEKK 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 735 TEKIACLDDNLANKEKTITHLrltLSELESSTDQLKDL---LSSRDREISSLRRQLDASHTEIAETGRVKEIALkenrrl 811
Cdd:TIGR04523 238 QQEINEKTTEISNTQTQLNQL---KDEQNKIKKQLSEKqkeLEQNNKKIKELEKQLNQLKSEISDLNNQKEQDW------ 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 812 qddlatmtreNQAVSSELEDAIREKEEMKTRVHNYITEVSRFESLIASKEKENQELlekfrmlhtqaedweikahqaEGE 891
Cdd:TIGR04523 309 ----------NKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNS---------------------ESE 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 892 SSSIRLELLSVDTDRRHLRERVELLEKEIQEHMIAHQAYESQISSITKNMSKLEEDIKREHQDKSSVLADLTSVRELCVK 971
Cdd:TIGR04523 358 NSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIK 437
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 972 LEASKDLLSRQLASKSMDYEKVLGELEDVKSEAELLKKQLSSERLTIQNLETLLaTSRDKEFqNHLTSHEKDSE--IQLL 1049
Cdd:TIGR04523 438 NNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKEL-KSKEKEL-KKLNEEKKELEekVKDL 515
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 2024408242 1050 KDKLTLAEGKLSSHNREVSMLRSKVAQLQTDYDVLKRQLTTERFERE 1096
Cdd:TIGR04523 516 TKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKE 562
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
504-1111 |
4.28e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.27 E-value: 4.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 504 DRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELnrlrREAKHNLVSQSHVGEDGDASLADFRRLMAE-KESLREKLki 582
Cdd:pfam15921 74 EHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYL----RQSVIDLQTKLQEMQMERDAMADIRRRESQsQEDLRNQL-- 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 583 QQEAANLEKSKMQHDiSVLENNIQQFELERCELKSTISILKErIKSLENELKLKSSKLIQTSDDSSQL--KAELCSLHLL 660
Cdd:pfam15921 148 QNTVHELEAAKCLKE-DMLEDSNTQIEQLRKMMLSHEGVLQE-IRSILVDFEEASGKKIYEHDSMSTMhfRSLGSAISKI 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 661 NEQLQRTVEDLQHRFSLKKDELQSAQEEI-----VKLEEKIDRLNQKSTSQDEAVNVLRSTISVLDKEKDNLQETVDEKT 735
Cdd:pfam15921 226 LRELDTEISYLKGRIFPVEDQLEALKSESqnkieLLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQ 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 736 EKIaclddnlanKEKTITHLRlTLSELESSTDQLKDLLSSRDR----EISSLRRQLDASHTEIAETGRVKEIALKENRRL 811
Cdd:pfam15921 306 EQA---------RNQNSMYMR-QLSDLESTVSQLRSELREAKRmyedKIEELEKQLVLANSELTEARTERDQFSQESGNL 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 812 QDDL----ATMTRENQAVSSELEDAIR----------EKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKfRMLHTQ 877
Cdd:pfam15921 376 DDQLqkllADLHKREKELSLEKEQNKRlwdrdtgnsiTIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMER-QMAAIQ 454
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 878 AEDWEI-KAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQEHMIAHQAYESQISSITKNMSKLEEDIKREHQDks 956
Cdd:pfam15921 455 GKNESLeKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQE-- 532
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 957 svLADLTSVRELCVKLEASKDLLSRQLASKSMDYEKVLGELED--------------VKSEAELLKKQLSSERLTIQNLE 1022
Cdd:pfam15921 533 --LQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENmtqlvgqhgrtagaMQVEKAQLEKEINDRRLELQEFK 610
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 1023 TLlatsRDKEFQNHLTSHEKDSEIQLLKDKLTLAEGKLSSHNR-----------EVSMLRSKVAQLQTDYDVLKRQLTTE 1091
Cdd:pfam15921 611 IL----KDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKdikqerdqllnEVKTSRNELNSLSEDYEVLKRNFRNK 686
|
650 660
....*....|....*....|
gi 2024408242 1092 RFERERAIQEMRRHGLSTSS 1111
Cdd:pfam15921 687 SEEMETTTNKLKMQLKSAQS 706
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
320-843 |
5.47e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.83 E-value: 5.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 320 NEIDHLAQQLERHKEIvletaDKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLsEELFGKADDKenlELL 399
Cdd:PRK03918 176 RRIERLEKFIKRTENI-----EELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEL-EELKEEIEEL---EKE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 400 LNQLEQEKQRLTEKTENFEIKERELVLEIERMRLEYG----IALGDKSPSRLDAFVKTLEDDRDYYKRELEYLQKMIKRR 475
Cdd:PRK03918 247 LESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKelkeLKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGI 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 476 PSPSRRSPEKSEDLRLITRERDELQSMLDRFEKHMIEIQsNVKLLTAERDRLNilYEQSQSELNRLRREAKHNLVSQSHV 555
Cdd:PRK03918 327 EERIKELEEKEERLEELKKKLKELEKRLEELEERHELYE-EAKAKKEELERLK--KRLTGLTPEKLEKELEELEKAKEEI 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 556 GEDGDASLADFRRLMAEKESLR---EKLKIQQEAANLEKSKMQHDISvlENNIQQFELERCELKSTISILKERIKSLENE 632
Cdd:PRK03918 404 EEEISKITARIGELKKEIKELKkaiEELKKAKGKCPVCGRELTEEHR--KELLEEYTAELKRIEKELKEIEEKERKLRKE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 633 LKLKSSKLIQTSddssqlkaELCSLHLLNEQLQRTVEDLQhrfSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNV 712
Cdd:PRK03918 482 LRELEKVLKKES--------ELIKLKELAEQLKELEEKLK---KYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEK 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 713 LRStisvLDKEKDNLQETVDEKTEKIACLDDNLANKE-KTITHLRLTLSELESSTDQLKDLLSSRDR------EISSLRR 785
Cdd:PRK03918 551 LEE----LKKKLAELEKKLDELEEELAELLKELEELGfESVEELEERLKELEPFYNEYLELKDAEKElereekELKKLEE 626
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024408242 786 QLDASHTEIAETGRV-----KEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRV 843
Cdd:PRK03918 627 ELDKAFEELAETEKRleelrKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRR 689
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
255-815 |
7.25e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.40 E-value: 7.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 255 EVISLESRSKSNEKLIAQLNLQVEYLQQSNKELENRIQDLLDTKKNVTSEVVHLSNKNEELCQELNEIDHLAQQLErHKE 334
Cdd:TIGR04523 125 ELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLE-LLL 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 335 IVLETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELfgkaddkenlELLLNQLEQEKQRLTEKT 414
Cdd:TIGR04523 204 SNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQL----------NQLKDEQNKIKKQLSEKQ 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 415 ENFEiKERELVLEIERMRLEYGIALGDKSPSRLDAFVKTLEDDRDYYKRELEYLQKMIKRRPSPSRRSPEKSEDLRlitR 494
Cdd:TIGR04523 274 KELE-QNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLK---K 349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 495 ERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAKHnlvsQSHVGEDGDASLADFRRLMAEKE 574
Cdd:TIGR04523 350 ELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQN----QEKLNQQKDEQIKKLQQEKELLE 425
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 575 SLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLEN-------ELKLKSSKLIQTSDDS 647
Cdd:TIGR04523 426 KEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQnleqkqkELKSKEKELKKLNEEK 505
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 648 SQLKAELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVK---------LEEKIDRLNQKstsqdeaVNVLRSTIS 718
Cdd:TIGR04523 506 KELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKddfelkkenLEKEIDEKNKE-------IEELKQTQK 578
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 719 VLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQLDASHTEIAETG 798
Cdd:TIGR04523 579 SLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIR 658
|
570
....*....|....*..
gi 2024408242 799 RVKEIALKENRRLQDDL 815
Cdd:TIGR04523 659 NKWPEIIKKIKESKTKI 675
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
630-835 |
7.34e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 49.83 E-value: 7.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 630 ENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLN--------- 700
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERReelgerara 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 701 -QKSTSQDEAVNVLRST---------ISVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLK 770
Cdd:COG3883 95 lYRSGGSVSYLDVLLGSesfsdfldrLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELE 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024408242 771 DLLSSRDREISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIRE 835
Cdd:COG3883 175 AQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 239
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
759-1030 |
8.79e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.04 E-value: 8.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 759 LSELESSTDQLKDLLSsrDREISSLRRQLDASHTEIAETGrvKEIALKENRRLQddlATMTREnqavssELEDAIREKEE 838
Cdd:PRK02224 182 LSDQRGSLDQLKAQIE--EKEEKDLHERLNGLESELAELD--EEIERYEEQREQ---ARETRD------EADEVLEEHEE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 839 MKTRVHNYITEVSRFESLIASKEKENQELLEKFRMLHTQAEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEK 918
Cdd:PRK02224 249 RREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRD 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 919 EIQEHMIAHQAYESQISSITKNMSKLEEDIKREHQDKSSVLADLTSVRELCVKLEASKDLLSRQLASKSMDYEKVLGELE 998
Cdd:PRK02224 329 RLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLG 408
|
250 260 270
....*....|....*....|....*....|..
gi 2024408242 999 DVKSEAELLKKQLSSERLTIQNLETLLATSRD 1030
Cdd:PRK02224 409 NAEDFLEELREERDELREREAELEATLRTARE 440
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
563-1022 |
9.34e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 50.17 E-value: 9.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 563 LADFRRLMAEKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELER-------CELKSTISILKERIKSLeNELKL 635
Cdd:pfam01576 105 IQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERklleeriSEFTSNLAEEEEKAKSL-SKLKN 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 636 KSSKLIQTSDD---------------SSQLKAELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVK-------LE 693
Cdd:pfam01576 184 KHEAMISDLEErlkkeekgrqelekaKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEetaqknnAL 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 694 EKIDRLNQKSTSQDEAVNVLRSTISVLDKEKDNLQETVDE-KTEKIACLDDNLAN------KEKTITHLRLTLSELESST 766
Cdd:pfam01576 264 KKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEAlKTELEDTLDTTAAQqelrskREQEVTELKKALEEETRSH 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 767 D-QLKDLLSSRDREISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTREN--------------QAVSSELED 831
Cdd:pfam01576 344 EaQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKqdsehkrkklegqlQELQARLSE 423
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 832 AIREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKFRMLHTQAEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRE 911
Cdd:pfam01576 424 SERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQE 503
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 912 RVEllekeiqEHMIAHQAYESQISSITKNMSkleeDIKREHQDKSSVLADLTSVRElcvKLEASKDLLSRQLASKSMDYE 991
Cdd:pfam01576 504 QLE-------EEEEAKRNVERQLSTLQAQLS----DMKKKLEEDAGTLEALEEGKK---RLQRELEALTQQLEEKAAAYD 569
|
490 500 510
....*....|....*....|....*....|.
gi 2024408242 992 KVLGELEDVKSEAELLKKQLSSERLTIQNLE 1022
Cdd:pfam01576 570 KLEKTKNRLQQELDDLLVDLDHQRQLVSNLE 600
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
746-1105 |
9.57e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.06 E-value: 9.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 746 ANKEKTITHLRLTLSELesstDQLKDLLSSRDREISSLRRQldashTEIAEtgrvKEIALKENRRlQDDLATMTRENQAV 825
Cdd:TIGR02168 172 ERRKETERKLERTRENL----DRLEDILNELERQLKSLERQ-----AEKAE----RYKELKAELR-ELELALLVLRLEEL 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 826 SSELEDAIREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKFrmlhtqaedweikaHQAEGESSSIRLELLSVDTD 905
Cdd:TIGR02168 238 REELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEI--------------EELQKELYALANEISRLEQQ 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 906 RRHLRERVELLEKEIQEHMIAHQAYESQISSITKNMSKLEEDIKREHQDKSSVLADLTSVRELCVKLEASKDLLSRQLAS 985
Cdd:TIGR02168 304 KQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLET 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 986 KSMDYEKVLGELEDVKSEAELLKKQLSSERLTIQNLETLLATSRDKEFQNHLtsHEKDSEIQLLKDKLTLAEGKLSSHNR 1065
Cdd:TIGR02168 384 LRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAEL--KELQAELEELEEELEELQEELERLEE 461
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 2024408242 1066 EVSMLRSKVAQLQTDYDVLKRQLTTERFeRERAIQEMRRH 1105
Cdd:TIGR02168 462 ALEELREELEEAEQALDAAERELAQLQA-RLDSLERLQEN 500
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
586-790 |
1.04e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 1.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 586 AANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQ 665
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 666 RTVEDLQH--------------------------------RFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVL 713
Cdd:COG4942 97 AELEAQKEelaellralyrlgrqpplalllspedfldavrRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024408242 714 RSTISVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTIThlrltlsELESSTDQLKDLLSSRDREISSLRRQLDAS 790
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELA-------ELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
573-922 |
1.25e-05 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 49.44 E-value: 1.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 573 KESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKA 652
Cdd:pfam10174 301 KESELLALQTKLETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKSTLAG 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 653 ELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTISVLDKEKDNLQETVD 732
Cdd:pfam10174 381 EIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEEALSEKERIIERLKEQRE 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 733 ----EKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSS---------------------RDREISSLRRQL 787
Cdd:pfam10174 461 redrERLEELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSlassglkkdsklksleiaveqKKEECSKLENQL 540
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 788 DASHtEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESLIASKEKENQEL 867
Cdd:pfam10174 541 KKAH-NAEEAVRTNPEINDRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAELESLTLRQMKEQNKK 619
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 2024408242 868 LEKFRMLHTQaedwEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQE 922
Cdd:pfam10174 620 VANIKHGQQE----MKKKGAQLLEEARRREDNLADNSQQLQLEELMGALEKTRQE 670
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
285-1104 |
1.58e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 49.27 E-value: 1.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 285 KELENRIQDLLDTKKNVTS---EVVHLSNKNEELCQELNEIDHLAQQLERHKEIV--LETADKEIGEAKKEIERKDSEIQ 359
Cdd:TIGR00606 186 KALETLRQVRQTQGQKVQEhqmELKYLKQYKEKACEIRDQITSKEAQLESSREIVksYENELDPLKNRLKEIEHNLSKIM 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 360 DLEETITRLKS---ELSSCRRQNERLSEELFGKADDKENL-----ELLLNQLEQEKQRLTEKTENFEIKERELVLEIERM 431
Cdd:TIGR00606 266 KLDNEIKALKSrkkQMEKDNSELELKMEKVFQGTDEQLNDlyhnhQRTVREKERELVDCQRELEKLNKERRLLNQEKTEL 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 432 RLEYGIALGDKSPSRLDAFVKTLEDDRDYYKRELEYLQK----MIKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRFE 507
Cdd:TIGR00606 346 LVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERgpfsERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQ 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 508 KHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAKHNLVSQSHVGEDGDASLADFRRL-MAEKESLREKLKIQQEA 586
Cdd:TIGR00606 426 EQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELsKAEKNSLTETLKKEVKS 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 587 ANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSskliQTSDDSSQLKAELCSlhllNEQLQR 666
Cdd:TIGR00606 506 LQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKS----RHSDELTSLLGYFPN----KKQLED 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 667 TVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTI------SVLDKEKDNLQETVDEKTEKIAC 740
Cdd:TIGR00606 578 WLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLfdvcgsQDEESDLERLKEEIEKSSKQRAM 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 741 LDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQLDASHTEIAETGrvKEIALKENRRlqddlATMTR 820
Cdd:TIGR00606 658 LAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTE--SELKKKEKRR-----DEMLG 730
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 821 ENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKFRM-------------LHTQAEDWEIKAHQ 887
Cdd:TIGR00606 731 LAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESakvcltdvtimerFQMELKDVERKIAQ 810
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 888 AEGESSSIRLELLSVDTDR---------RHLRERVELLEKEIQEHMIAHQAYESQISSITKNMSKLEEDIKREHQDKSSV 958
Cdd:TIGR00606 811 QAAKLQGSDLDRTVQQVNQekqekqhelDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQL 890
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 959 LADLTSVRELCVKLEASKD-------LLSRQLASKSMDYEKVLGELEDVKSEAELLKKQLSSERLTIQNLETLLATSRDK 1031
Cdd:TIGR00606 891 VELSTEVQSLIREIKDAKEqdspletFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDD 970
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024408242 1032 EFQnhltshEKDSEIQLLKDKLTLAEGKLSSHNREVSMLRSKVAQLQTDYDVLKRQLTteRFERERAIQEMRR 1104
Cdd:TIGR00606 971 YLK------QKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLT--LRKRENELKEVEE 1035
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
205-952 |
1.89e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 49.27 E-value: 1.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 205 RIQELQSEVTQLQEKLEISENGKKNYSKQVELRDKEIERLMLALDGGRSHEVISLESRSKSNEKLIAQLNLQVEYLQQSN 284
Cdd:TIGR00606 263 KIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEK 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 285 KELENRIQDLLDTKKNVTSEVVHLSNKNEELC--QELNEIDHLA---QQLERHKEIVLETADKEIGEAKKEIERKDSEIQ 359
Cdd:TIGR00606 343 TELLVEQGRLQLQADRHQEHIRARDSLIQSLAtrLELDGFERGPfseRQIKNFHTLVIERQEDEAKTAAQLCADLQSKER 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 360 DLEETITRLKSELSSCRRQNERLSEELFGKADDKENLELLLNQLEQEKQRLTEKTENFEIKERELVLEIERMRLEYGIAl 439
Cdd:TIGR00606 423 LKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKK- 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 440 GDKSPSRLDAFVKTLEDDRDYYKRELEYLQKMIKRRPSPSRRSPEKSEDLRLI-TRERDELQSMLDRF------EKHMIE 512
Cdd:TIGR00606 502 EVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIkSRHSDELTSLLGYFpnkkqlEDWLHS 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 513 IQSNVKLLTAERDRLNILYEQSQSELNRLRREAKHNLVSQSHVGED------GDASLADFRRLMAEKESLREKLKIQQEA 586
Cdd:TIGR00606 582 KSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKlfdvcgSQDEESDLERLKEEIEKSSKQRAMLAGA 661
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 587 ANL------------------------EKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSL-------ENELKL 635
Cdd:TIGR00606 662 TAVysqfitqltdenqsccpvcqrvfqTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMlglapgrQSIIDL 741
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 636 KSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRFSLKKDEL------QSAQEEIVKLEEKIDRLNQKSTSQDea 709
Cdd:TIGR00606 742 KEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLtdvtimERFQMELKDVERKIAQQAAKLQGSD-- 819
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 710 vnvLRSTISVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRD----------RE 779
Cdd:TIGR00606 820 ---LDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQqfeeqlvelsTE 896
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 780 ISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVSrfESLIAS 859
Cdd:TIGR00606 897 VQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGK--DDYLKQ 974
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 860 KEKENQELLEKFRMLHTQAEDWE--IKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQEHMiaHQAYESQISSI 937
Cdd:TIGR00606 975 KETELNTVNAQLEECEKHQEKINedMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHL--KEMGQMQVLQM 1052
|
810
....*....|....*...
gi 2024408242 938 TKNMSKLEED---IKREH 952
Cdd:TIGR00606 1053 KQEHQKLEENidlIKRNH 1070
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
622-828 |
2.27e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 2.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 622 LKERIKSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQ 701
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 702 K---------STSQDEAVNVLRSTISVLDKEK---------DNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELE 763
Cdd:COG4942 105 ElaellralyRLGRQPPLALLLSPEDFLDAVRrlqylkylaPARREQAEELRADLAELAALRAELEAERAELEALLAELE 184
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024408242 764 SSTDQLKDLLSSRDREISSLRRQLDASHTEIAEtgrvkeiALKENRRLQDDLATMTRENQAVSSE 828
Cdd:COG4942 185 EERAALEALKAERQKLLARLEKELAELAAELAE-------LQQEAEELEALIARLEAEAAAAAER 242
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
204-789 |
3.42e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.14 E-value: 3.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 204 NRIQELQSEVTQLQEKLEISENGKKNYSKQVElrdkeierlmlaldggrshevislesrsksnekLIAQLNLQVEYLQQS 283
Cdd:PRK03918 207 REINEISSELPELREELEKLEKEVKELEELKE---------------------------------EIEELEKELESLEGS 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 284 NKELENRIQDLLDTKKNVTSEVVHLsnknEELCQELNEIDHLAQQLERHKEIVLETADKEiGEAKKEIERKDSEIQDLEE 363
Cdd:PRK03918 254 KRKLEEKIRELEERIEELKKEIEEL----EEKVKELKELKEKAEEYIKLSEFYEEYLDEL-REIEKRLSRLEEEINGIEE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 364 TItrlkSELSSCRRQNERLSEELfgkaddkenlelllNQLEQEKQRLTEKTENFEiKERELVLEIERMRLEygiaLGDKS 443
Cdd:PRK03918 329 RI----KELEEKEERLEELKKKL--------------KELEKRLEELEERHELYE-EAKAKKEELERLKKR----LTGLT 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 444 PSRLdafvktleddrdyyKRELEYLQKmikrrpspsrRSPEKSEDLRLITRERDELQSMLDRFEKHMIEIQSN------V 517
Cdd:PRK03918 386 PEKL--------------EKELEELEK----------AKEEIEEEISKITARIGELKKEIKELKKAIEELKKAkgkcpvC 441
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 518 KLLTAERDRLNILYEQSqSELNRLRREAKhnlvSQSHVGEDGDASLADFRRLMAEKESLREKLKIQQEAANLEKSKMQHD 597
Cdd:PRK03918 442 GRELTEEHRKELLEEYT-AELKRIEKELK----EIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYN 516
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 598 ISVLENNIQQFEL---ERCELKSTISILKERIKSLEnELKLKSSKLIQTSDDSSQLKAELcsLHLLNEQLQRTVEDLQHR 674
Cdd:PRK03918 517 LEELEKKAEEYEKlkeKLIKLKGEIKSLKKELEKLE-ELKKKLAELEKKLDELEEELAEL--LKELEELGFESVEELEER 593
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 675 ------FSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTISVLDKEKDNLQETVDEKTEKiaclddnlaNK 748
Cdd:PRK03918 594 lkelepFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYE---------EL 664
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 2024408242 749 EKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQLDA 789
Cdd:PRK03918 665 REEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEE 705
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
456-685 |
3.56e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 3.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 456 DDRDYYKRELEYLQKMIKRRPSPSRRSPEK----SEDLRLITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILY 531
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEekalLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 532 EQSQSELNRLRREA-KHNLVSQSHVGEDGDASLADFRRLMAEKESLREklkIQQEAANLEKskmqhDISVLENNIQQFEL 610
Cdd:COG4942 100 EAQKEELAELLRALyRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPA---RREQAEELRA-----DLAELAALRAELEA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024408242 611 ERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSA 685
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
627-1053 |
3.88e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 48.15 E-value: 3.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 627 KSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVedlqhrfslkKDELQSAQEEIVKLEEKIDRLNQKSTSQ 706
Cdd:COG5022 785 RLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTI----------KREKKLRETEEVEFSLKAEVLIQKFGRS 854
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 707 DEAVNVLRSTI--SVLDKEKDNLQETVDEKTEKiacLDDNlankeKTITHLRLTLSELESSTDQLKDLLSSRDREISSLR 784
Cdd:COG5022 855 LKAKKRFSLLKkeTIYLQSAQRVELAERQLQEL---KIDV-----KSISSLKLVNLELESEIIELKKSLSSDLIENLEFK 926
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 785 RQLDASHTEIAETGRVKEIALKE---NRRLQDDLATMTRENQAvSSELEDAIREKEEMKTRVHNYITEVSRFESLIASKE 861
Cdd:COG5022 927 TELIARLKKLLNNIDLEEGPSIEyvkLPELNKLHEVESKLKET-SEEYEDLLKKSTILVREGNKANSELKNFKKELAELS 1005
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 862 KENQELLEKFRML-HTQAEDWEIKAHQAEGES-SSIRLELLSVDTDRRHLRERVELLEKEIQE--------HMIAHQAYE 931
Cdd:COG5022 1006 KQYGALQESTKQLkELPVEVAELQSASKIISSeSTELSILKPLQKLKGLLLLENNQLQARYKAlklrrensLLDDKQLYQ 1085
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 932 SQissITKNMSKLEEDIKREHQDKSSVLadLTSVRELCVKLEASKDLLSRQ---LASKSMDYEKVLGELEDVKSEAELLK 1008
Cdd:COG5022 1086 LE---STENLLKTINVKDLEVTNRNLVK--PANVLQFIVAQMIKLNLLQEIskfLSQLVNTLEPVFQKLSVLQLELDGLF 1160
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 2024408242 1009 KQLSSERLTiqNLETLLATSRDKEFQNHLT---SHEKDSEIQLLKDKL 1053
Cdd:COG5022 1161 WEANLEALP--SPPPFAALSEKRLYQSALYdekSKLSSSEVNDLKNEL 1206
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
235-386 |
4.71e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 47.55 E-value: 4.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 235 ELRDKEIERLMLALDGGRSHEVISLESrsksNEKLIAQLNLQVEYLQQSNKELENRIQDLLDTkknvtsevvhlsnkNEE 314
Cdd:COG2433 384 ELIEKELPEEEPEAEREKEHEERELTE----EEEEIRRLEEQVERLEAEVEELEAELEEKDER--------------IER 445
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024408242 315 LCQELNEIdhlaqQLERHKEIvletadkeigeakkeieRKDSEIQDLEETITRLKSELSSCRRQNERLSEEL 386
Cdd:COG2433 446 LERELSEA-----RSEERREI-----------------RKDREISRLDREIERLERELEEERERIEELKRKL 495
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
636-1106 |
6.79e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.14 E-value: 6.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 636 KSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVK-LEEKIDRLNQKSTSQDEAVNVLR 714
Cdd:pfam12128 242 EFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDqWKEKRDELNGELSAADAAVAKDR 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 715 STISVLDKEK------------------DNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSE-----LESSTDQLKD 771
Cdd:pfam12128 322 SELEALEDQHgafldadietaaadqeqlPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEqnnrdIAGIKDKLAK 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 772 LLSSRDREI-----------SSLRRQLDASHTEIAETGRVKEIALKENRRLQDDlATMTRE---NQAVSSELEDAIREKE 837
Cdd:pfam12128 402 IREARDRQLavaeddlqaleSELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQ-ATATPElllQLENFDERIERAREEQ 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 838 E---------------MKTRVHNYITEVSRFESLIASKEKENQELLEK--------FRMLHTQAEDW------------- 881
Cdd:pfam12128 481 EaanaeverlqselrqARKRRDQASEALRQASRRLEERQSALDELELQlfpqagtlLHFLRKEAPDWeqsigkvispell 560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 882 -------EIKAHQAEGESS--SIRLELLSVDTDRRH-----LRERVELLEKEIQEHMIAHQAYESQISSITK---NMSKL 944
Cdd:pfam12128 561 hrtdldpEVWDGSVGGELNlyGVKLDLKRIDVPEWAaseeeLRERLDKAEEALQSAREKQAAAEEQLVQANGeleKASRE 640
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 945 EEDIKREHQDkssvlADLTsVRELCVKLEASKDLLSRQLASKSmdyEKVLGELEDVKSEAELLKKQLSSERLTIQnlETL 1024
Cdd:pfam12128 641 ETFARTALKN-----ARLD-LRRLFDEKQSEKDKKNKALAERK---DSANERLNSLEAQLKQLDKKHQAWLEEQK--EQK 709
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 1025 LATSRDKEFQNHLTSHEKDSEIQLLKDKLTLAEgklSSHNREVSMLRS----KVAQLQTDYDVLKRqLTTERFERERAIQ 1100
Cdd:pfam12128 710 REARTEKQAYWQVVEGALDAQLALLKAAIAARR---SGAKAELKALETwykrDLASLGVDPDVIAK-LKREIRTLERKIE 785
|
....*.
gi 2024408242 1101 EMRRHG 1106
Cdd:pfam12128 786 RIAVRR 791
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
65-843 |
8.92e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.98 E-value: 8.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 65 DAIIEPYKTETAKLTRENNEL--HLEVLKLKEQSD-----HHIKDLKASLRRAENEAADLRFLNNQYVHKIKLLEKESKA 137
Cdd:TIGR02169 190 DLIIDEKRQQLERLRREREKAerYQALLKEKREYEgyellKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 138 KTEKIQQLQEKnlqaVVQTPGGRKRNIPFRRQRMQIDQPVPPSAVSAYpvpqpedpyiADLLQVADNRIQELQSEVTQLQ 217
Cdd:TIGR02169 270 IEQLLEELNKK----IKDLGEEEQLRVKEKIGELEAEIASLERSIAEK----------ERELEDAEERLAKLEAEIDKLL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 218 EKLEISENGKKNYSKQVELRDKEIERLMLALDGGRShEVISLESRSKSNEKLIAQLNLQVEYLQQSNKELENRIQDLLDT 297
Cdd:TIGR02169 336 AEIEELEREIEEERKRRDKLTEEYAELKEELEDLRA-ELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEE 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 298 KKNVTSEVVHLSNKNEELCQELNE-----------IDHLAQQLERHKEIvLETADKEIGEAK-------KEIERKDSEIQ 359
Cdd:TIGR02169 415 LQRLSEELADLNAAIAGIEAKINEleeekedkaleIKKQEWKLEQLAAD-LSKYEQELYDLKeeydrveKELSKLQRELA 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 360 DLEETITRLKSELSSCRRQNERLSEELFGKADdkenlelllnqleqekqrltektenfeikereLVLEIERMRLEYGIAL 439
Cdd:TIGR02169 494 EAEAQARASEERVRGGRAVEEVLKASIQGVHG--------------------------------TVAQLGSVGERYATAI 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 440 GDKSPSRLDAFVKtleDDRDYYKRELEYLQ-------------KMIKRRPSPSRRSPEKSEDLRLITRERDE-------- 498
Cdd:TIGR02169 542 EVAAGNRLNNVVV---EDDAVAKEAIELLKrrkagratflplnKMRDERRDLSILSEDGVIGFAVDLVEFDPkyepafky 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 499 ------LQSMLDRFEKHMIeiqsNVKLLTAERDrlniLYEQSQSELNRLRREAKHNLVSQShvgedGDASLADFRRLMAE 572
Cdd:TIGR02169 619 vfgdtlVVEDIEAARRLMG----KYRMVTLEGE----LFEKSGAMTGGSRAPRGGILFSRS-----EPAELQRLRERLEG 685
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 573 KESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKA 652
Cdd:TIGR02169 686 LKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEA 765
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 653 ELCSLHLLNEQLQRTVEDL-----QHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQ-------DEAVNVLRSTISVL 720
Cdd:TIGR02169 766 RIEELEEDLHKLEEALNDLearlsHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLtlekeylEKEIQELQEQRIDL 845
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 721 DKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQLDASHTEIAETGRV 800
Cdd:TIGR02169 846 KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAK 925
|
810 820 830 840
....*....|....*....|....*....|....*....|...
gi 2024408242 801 KEIALKENRRLQDDLATMTRENQAVSSeLEDAIREKEEMKTRV 843
Cdd:TIGR02169 926 LEALEEELSEIEDPKGEDEEIPEEELS-LEDVQAELQRVEEEI 967
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
111-603 |
1.30e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 46.25 E-value: 1.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 111 ENEAADLRFLNNQYVHKIKLLEKESKAKTEKIQQLQEK-------------NLQAVVQTPGGRKRNIPF---------RR 168
Cdd:pfam05483 253 ENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKkdhltkeledikmSLQRSMSTQKALEEDLQIatkticqltEE 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 169 QRMQIDQPVPPSAVSAYPVPQPEDPY--IADLLQVADNRIQELQSEVTQLQEKL-----EISENGKKNYSKQVELRD--- 238
Cdd:pfam05483 333 KEAQMEELNKAKAAHSFVVTEFEATTcsLEELLRTEQQRLEKNEDQLKIITMELqkkssELEEMTKFKNNKEVELEElkk 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 239 ------------KEIERLMLALDGGRSHEVISLESRSKSNEKLIAQLNLQVEYLQQSNKELENRIQDLLDTK-KNV--TS 303
Cdd:pfam05483 413 ilaedeklldekKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKlKNIelTA 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 304 EVVHLSNKNEELCQELNEidhLAQQLERHKEivletadkEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLS 383
Cdd:pfam05483 493 HCDKLLLENKELTQEASD---MTLELKKHQE--------DIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKG 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 384 EELFGKADDKENLELLLNQLEQEKQRLTEKTENFEIKERELV---------LEIERMRLEYGIALGDKSPSRLDAFVKTL 454
Cdd:pfam05483 562 DEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIenknknieeLHQENKALKKKGSAENKQLNAYEIKVNKL 641
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 455 EDDRDYYKRELEYL----QKMIKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRFEKHmiEIQSNVKLLTAERDRLNIL 530
Cdd:pfam05483 642 ELELASAKQKFEEIidnyQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQH--KIAEMVALMEKHKHQYDKI 719
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024408242 531 YEQSQSELNRLRREAKhnlvSQSHVGEDGDASLADFRrlmAEKESLREKLKIQQEAANLEKSKMQHDISVLEN 603
Cdd:pfam05483 720 IEERDSELGLYKNKEQ----EQSSAKAALEIELSNIK---AELLSLKKQLEIEKEEKEKLKMEAKENTAILKD 785
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
196-386 |
1.46e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 1.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 196 ADLLQVADNRIQELQSEVTQLQEKLEISENGKKNYSKQVELRDKEIERLmlaldggrSHEVISLESRSKSNEKLIAQLNL 275
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAAL--------ARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 276 QVEYLQQSNKELENRIQDLLDT---KKNVTSEVVHLSNKN----------------------EELCQELNEIDHLAQQLE 330
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRAlyrLGRQPPLALLLSPEDfldavrrlqylkylaparreqaEELRADLAELAALRAELE 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2024408242 331 RHK---EIVLETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEEL 386
Cdd:COG4942 171 AERaelEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALI 229
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
571-768 |
1.46e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.59 E-value: 1.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 571 AEKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLI-------QT 643
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGeraralyRS 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 644 SDDSSQLKAelcslhLLNeqlQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTISVLDKE 723
Cdd:COG3883 99 GGSVSYLDV------LLG---SESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAA 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2024408242 724 KDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQ 768
Cdd:COG3883 170 KAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAA 214
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
313-835 |
1.59e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 1.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 313 EELCQELNEIDHLAQQLERHKEIV-LETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFG-KA 390
Cdd:COG4913 258 RELAERYAAARERLAELEYLRAALrLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGnGG 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 391 DDKENLELLLNQLEQEKQRLTEKTENFEIKERELVLEIERmrleygialgdkSPSRLDAFVKTLEDDRDYYKRELEYLQk 470
Cdd:COG4913 338 DRLEQLEREIERLERELEERERRRARLEALLAALGLPLPA------------SAEEFAALRAEAAALLEALEEELEALE- 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 471 miKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRFEKHMIEIQSN------------------VKLLTAERD------- 525
Cdd:COG4913 405 --EALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDAlaealgldeaelpfvgelIEVRPEEERwrgaier 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 526 -----RLNILYEQSQseLNRLRREAKHNLVSQSHVGEDGDASLADFRRLMAEKESLREKLKIQQ-EAANLEKSKMQHDIS 599
Cdd:COG4913 483 vlggfALTLLVPPEH--YAAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDPDSLAGKLDFKPhPFRAWLEAELGRRFD 560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 600 VLE-NNIQQFELER------CELKS--------------TISIL----KERIKSLENELKLKSSKLIQTSDDSSQLKAEl 654
Cdd:COG4913 561 YVCvDSPEELRRHPraitraGQVKGngtrhekddrrrirSRYVLgfdnRAKLAALEAELAELEEELAEAEERLEALEAE- 639
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 655 csLHLLNEQLQRTVEDLQHRFSLkkDELQSAQEEIVKLEEKIDRLNQkstSQDEaVNVLRSTISVLDKEKDNLQETVDEK 734
Cdd:COG4913 640 --LDALQERREALQRLAEYSWDE--IDVASAEREIAELEAELERLDA---SSDD-LAALEEQLEELEAELEELEEELDEL 711
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 735 TEKIACLDDNLANKEKTITHLRLTLSELEsstdqlkdllssrDREISSLRRQLDASHTEIAETGRVKEIAlkenRRLQDD 814
Cdd:COG4913 712 KGEIGRLEKELEQAEEELDELQDRLEAAE-------------DLARLELRALLEERFAAALGDAVERELR----ENLEER 774
|
570 580
....*....|....*....|.
gi 2024408242 815 LATMTRENQAVSSELEDAIRE 835
Cdd:COG4913 775 IDALRARLNRAEEELERAMRA 795
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
703-922 |
1.88e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 1.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 703 STSQDEAVNVLRSTISVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISS 782
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 783 LRRQLDASHTEIAE-------TGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVsrfES 855
Cdd:COG4942 95 LRAELEAQKEELAEllralyrLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL---EA 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024408242 856 LIASKEKENQELLEKFRMLHTQAEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQE 922
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
660-889 |
2.37e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 45.30 E-value: 2.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 660 LNEQLQRTVEDLqHRFSL----------KKDELQSAQEEIVKLEEKIDRLNQ--------KSTSQDEAVNVLRSTISVLD 721
Cdd:PRK05771 14 LKSYKDEVLEAL-HELGVvhiedlkeelSNERLRKLRSLLTKLSEALDKLRSylpklnplREEKKKVSVKSLEELIKDVE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 722 KEKDNLQETVDEKTEKIAclddNLANKEKTITHLRLTLSELESSTDQLKDLLSSR--DREISSLRRQLDASHTEIAETGR 799
Cdd:PRK05771 93 EELEKIEKEIKELEEEIS----ELENEIKELEQEIERLEPWGNFDLDLSLLLGFKyvSVFVGTVPEDKLEELKLESDVEN 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 800 VKEIALKEN---------RRLQDDLATMTRENQAVSSELED------AIREKEEMKTRVHNYITEVSrfESLIASKEKEN 864
Cdd:PRK05771 169 VEYISTDKGyvyvvvvvlKELSDEVEEELKKLGFERLELEEegtpseLIREIKEELEEIEKERESLL--EELKELAKKYL 246
|
250 260
....*....|....*....|....*
gi 2024408242 865 QELLEKFRMLHTQAEDWEIKAHQAE 889
Cdd:PRK05771 247 EELLALYEYLEIELERAEALSKFLK 271
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
712-843 |
2.58e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 44.57 E-value: 2.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 712 VLRSTISVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQLDASH 791
Cdd:PRK09039 43 FLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELA 122
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 2024408242 792 TEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRV 843
Cdd:PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKI 174
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
303-530 |
2.96e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 44.92 E-value: 2.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 303 SEVVHLSNKNEELCQE-LNEIDHLAQQLERH--------------KEIVLETADKEIGEAKKEIERK----DSEIQDLEE 363
Cdd:PRK05771 28 LGVVHIEDLKEELSNErLRKLRSLLTKLSEAldklrsylpklnplREEKKKVSVKSLEELIKDVEEElekiEKEIKELEE 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 364 TITRLKSELSSCRRQNERLseELFGK--ADDKENLELLLNQLEQEKQRLTEKTENFEIKERELVLEIERMRLEYGIALgd 441
Cdd:PRK05771 108 EISELENEIKELEQEIERL--EPWGNfdLDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKGYVYVVV-- 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 442 kspsrldAFVKTLEDDRDYYKRELEYLQKMIKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRF-EKHMIEIQSNVKLL 520
Cdd:PRK05771 184 -------VVLKELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELaKKYLEELLALYEYL 256
|
250
....*....|
gi 2024408242 521 TAERDRLNIL 530
Cdd:PRK05771 257 EIELERAEAL 266
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
572-771 |
3.26e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 44.62 E-value: 3.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 572 EKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLK 651
Cdd:PHA02562 189 KIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIK 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 652 AELCSLHLLNEQLQ---------RTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEA---VNVLRSTISV 719
Cdd:PHA02562 269 SKIEQFQKVIKMYEkggvcptctQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQskkLLELKNKIST 348
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2024408242 720 LD--------------KEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKD 771
Cdd:PHA02562 349 NKqslitlvdkakkvkAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIVTDLLKD 414
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
614-1097 |
3.33e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.05 E-value: 3.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 614 ELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAELCSLhllnEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLE 693
Cdd:PRK03918 190 NIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEL----EELKEEIEELEKELESLEGSKRKLEEKIRELE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 694 EKIDRLNQKSTSQDEAVNVLRStISVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLL 773
Cdd:PRK03918 266 ERIEELKKEIEELEEKVKELKE-LKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELK 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 774 ssrdREISSLRRQLDASHTEIAETGRVKEIaLKENRRLQDDLATMTRENqaVSSELEDAIREKEEMKTRVHNYITEVSRF 853
Cdd:PRK03918 345 ----KKLKELEKRLEELEERHELYEEAKAK-KEELERLKKRLTGLTPEK--LEKELEELEKAKEEIEEEISKITARIGEL 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 854 ESLIASKEKENQELLEKFRM------LHTQAEDWEIKAHQAEgESSSIRLELLSVDTDRRHLRERVELLEKEI--QEHMI 925
Cdd:PRK03918 418 KKEIKELKKAIEELKKAKGKcpvcgrELTEEHRKELLEEYTA-ELKRIEKELKEIEEKERKLRKELRELEKVLkkESELI 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 926 AHQAYESQISSITKNMSKLE-EDIKREHQDkssvladLTSVRELCVKLEASKDLLSRQLaSKSMDYEKVLGELEDVKSEA 1004
Cdd:PRK03918 497 KLKELAEQLKELEEKLKKYNlEELEKKAEE-------YEKLKEKLIKLKGEIKSLKKEL-EKLEELKKKLAELEKKLDEL 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 1005 ELLKKQLSSE--RLTIQNLETLLATSRD-KEFQNHLTS--------HEKDSEIQLLKDKLTLAEGKLSSHNREVSMLRSK 1073
Cdd:PRK03918 569 EEELAELLKEleELGFESVEELEERLKElEPFYNEYLElkdaekelEREEKELKKLEEELDKAFEELAETEKRLEELRKE 648
|
490 500
....*....|....*....|....
gi 2024408242 1074 VAQLQTDYDVLKRQLTTERFERER 1097
Cdd:PRK03918 649 LEELEKKYSEEEYEELREEYLELS 672
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
265-470 |
3.52e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 3.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 265 SNEKLIAQLNLQVEYLQQSNKELENRIQDL------LDTKKNVTSEVVHLSNKNEELCQELNEIDHLAQQLERHKE--IV 336
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEALeaeldaLQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDAssDD 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 337 LETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERL-----------SEELFGKADDKENLELLLNQLEQ 405
Cdd:COG4913 687 LAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELqdrleaaedlaRLELRALLEERFAAALGDAVERE 766
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2024408242 406 EKQRLTEKTENFEIKERELVLEIERMRLEY------GIALGDKSPSRLDAFVK---TLEDDR--DYYKRELEYLQK 470
Cdd:COG4913 767 LRENLEERIDALRARLNRAEEELERAMRAFnrewpaETADLDADLESLPEYLAlldRLEEDGlpEYEERFKELLNE 842
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
507-845 |
3.95e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.73 E-value: 3.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 507 EKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAKHNLVSQSHVgEDGDASLADFRRLMAEKEslREKLKIQQEA 586
Cdd:pfam17380 281 QKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEM-DRQAAIYAEQERMAMERE--RELERIRQEE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 587 ANLEKSKMQHDisvlenniqqfelercELKSTISILKErIKSLENELKLKSSKLIQTSDDSSQLKaelcslhLLNEQLQR 666
Cdd:pfam17380 358 RKRELERIRQE----------------EIAMEISRMRE-LERLQMERQQKNERVRQELEAARKVK-------ILEEERQR 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 667 TV-EDLQHRFSLKKDELQSAQEEIVKLEEK----IDRLNQKSTSQDEAVNVLRSTISVLDKEKDNLQEtvdEKTEKIACL 741
Cdd:pfam17380 414 KIqQQKVEMEQIRAEQEEARQREVRRLEEErareMERVRLEEQERQQQVERLRQQEEERKRKKLELEK---EKRDRKRAE 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 742 DDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQldashtEIAETGRVKEIALKENRRLQDDLATMTRE 821
Cdd:pfam17380 491 EQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERR------REAEEERRKQQEMEERRRIQEQMRKATEE 564
|
330 340
....*....|....*....|....
gi 2024408242 822 NqavsSELEDAIREKEEMKTRVHN 845
Cdd:pfam17380 565 R----SRLEAMEREREMMRQIVES 584
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
560-939 |
4.43e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 4.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 560 DASLADFRRLMAEKESLREKLkiqqEAANLEKSKMQHDISVLENNIQQFEL--ERCELKSTISILKERIKSLENELKL-- 635
Cdd:COG4717 84 EEKEEEYAELQEELEELEEEL----EELEAELEELREELEKLEKLLQLLPLyqELEALEAELAELPERLEELEERLEElr 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 636 -KSSKLIQTSDDSSQLKAELCSLHLLN--------EQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQ 706
Cdd:COG4717 160 eLEEELEELEAELAELQEELEELLEQLslateeelQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAA 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 707 DEA--------VNVLRSTISVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDR 778
Cdd:COG4717 240 ALEerlkearlLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEE 319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 779 EISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTRENQ-------------AVSSELEDAIREKEEMKTRVHN 845
Cdd:COG4717 320 ELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQleeleqeiaallaEAGVEDEEELRAALEQAEEYQE 399
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 846 YITEVSRFESLIASKEKENQELLEKFrmlhtQAEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEK--EIQEH 923
Cdd:COG4717 400 LKEELEELEEQLEELLGELEELLEAL-----DEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEdgELAEL 474
|
410
....*....|....*.
gi 2024408242 924 MIAHQAYESQISSITK 939
Cdd:COG4717 475 LQELEELKAELRELAE 490
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
589-846 |
4.77e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 4.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 589 LEKSKMQHDISVLENNIQQFElercELKSTISILKERIKSLEnELKLKSSKLIQTSDDSSQLKAELcslhllneqLQRTV 668
Cdd:COG4913 218 LEEPDTFEAADALVEHFDDLE----RAHEALEDAREQIELLE-PIRELAERYAAARERLAELEYLR---------AALRL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 669 EDLQHRFSLKKDELQSAQEEIVKLEEKIDRLnqkstsqdeavnvlrstisvlDKEKDNLQETVDEKTEKIACLD-DNLAN 747
Cdd:COG4913 284 WFAQRRLELLEAELEELRAELARLEAELERL---------------------EARLDALREELDELEAQIRGNGgDRLEQ 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 748 KEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQLDASHTEIAETgrvKEIALKENRRLQDDLATMTRENQAVSS 827
Cdd:COG4913 343 LEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAAL---LEALEEELEALEEALAEAEAALRDLRR 419
|
250
....*....|....*....
gi 2024408242 828 ELEDAIREKEEMKTRVHNY 846
Cdd:COG4913 420 ELRELEAEIASLERRKSNI 438
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
204-518 |
5.60e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.24 E-value: 5.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 204 NRIQELQSEVTQLQEKLEISENGKKNYSKQVELRDKEIERLMLALDGGRSH------EVISLESRSKSNEKLIAQLNLQV 277
Cdd:TIGR04523 335 KIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEiknlesQINDLESKIQNQEKLNQQKDEQI 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 278 EYLQQSNKELENRIQDLLDTKKNVTSEVVHLSNKNEELCQELNEIDHLAQQLERHKEIV----------LETADKEIGEA 347
Cdd:TIGR04523 415 KKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLsrsinkikqnLEQKQKELKSK 494
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 348 KKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEElfgKADDKENLELLLNQLEQEKQRLteKTENFEIKERELVLE 427
Cdd:TIGR04523 495 EKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESE---KKEKESKISDLEDELNKDDFEL--KKENLEKEIDEKNKE 569
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 428 IERMRLEYgiALGDKSPSRLDAFVKTLEDDRDYYKRELEYLQKMIKRRPSPSRRSPEKSEDLRLItreRDELQSMLDRFE 507
Cdd:TIGR04523 570 IEELKQTQ--KSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSI---IKNIKSKKNKLK 644
|
330
....*....|.
gi 2024408242 508 KHMIEIQSNVK 518
Cdd:TIGR04523 645 QEVKQIKETIK 655
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
205-708 |
1.10e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.42 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 205 RIQELQSEVTQLQEKLEISENGKKNYSKQVELRDKEI-ERLMLALDGGRSHEVISLESRSKSNEKLIAQLNLQVE----- 278
Cdd:TIGR00618 380 HIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTsAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEkleki 459
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 279 YLQQSNKELENRIQdLLDTKKNVTSEVVHLSNKNEELCQELNEIDHLAQQLERHKEIVLETADkEIGEAKKEIERKDSEI 358
Cdd:TIGR00618 460 HLQESAQSLKEREQ-QLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDID-NPGPLTRRMQRGEQTY 537
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 359 QDLEETITRLKSELSSCRRQNERLSEELFGKADDKENLELLLNQLEQEKQRLTEKTENFEiKERELVLEIERMRLEYGIA 438
Cdd:TIGR00618 538 AQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQ-DLTEKLSEAEDMLACEQHA 616
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 439 LGDKSPSRLDAFVKTLEDDRDYYKRELEYLQKMIKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRFEKHMIEIQSNVK 518
Cdd:TIGR00618 617 LLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWK 696
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 519 LLTAERDRLNILYEQSQSELNRLRREAKHNLVSQ-SHVGEDGDASLADFRRLMAEKESLREKLKIQQEAANLEK------ 591
Cdd:TIGR00618 697 EMLAQCQTLLRELETHIEEYDREFNEIENASSSLgSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVtaalqt 776
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 592 -SKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAEL-CSLHLLNEQLQRTVE 669
Cdd:TIGR00618 777 gAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKsATLGEITHQLLKYEE 856
|
490 500 510
....*....|....*....|....*....|....*....
gi 2024408242 670 DLQhrfslKKDELQSAQEEIVKLEEKIDRLNQKSTSQDE 708
Cdd:TIGR00618 857 CSK-----QLAQLTQEQAKIIQLSDKLNGINQIKIQFDG 890
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
72-1080 |
1.24e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 43.12 E-value: 1.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 72 KTETAKLTRENNELHLEVLKLKEQSDHHIKDLKASLRRAENeaadlrFLNNQYVHKIKLLEKESKAKTEKIQQLQEKNLQ 151
Cdd:TIGR01612 1103 KEENIKYADEINKIKDDIKNLDQKIDHHIKALEEIKKKSEN------YIDEIKAQINDLEDVADKAISNDDPEEIEKKIE 1176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 152 AVVqTPGGRKRNIPFRRQRMQID-QPVPPSAVSAYPVPQPEDPY-----------IADLLQVADNRIQELQSEVTQLQEK 219
Cdd:TIGR01612 1177 NIV-TKIDKKKNIYDEIKKLLNEiAEIEKDKTSLEEVKGINLSYgknlgklflekIDEEKKKSEHMIKAMEAYIEDLDEI 1255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 220 LEISENGKKNYSKQVELRdKEIERLMLALDGGRSHEVISlesrsKSNEKLIAQLNLQVEYLQQSNkeleNRIQDLLDTKK 299
Cdd:TIGR01612 1256 KEKSPEIENEMGIEMDIK-AEMETFNISHDDDKDHHIIS-----KKHDENISDIREKSLKIIEDF----SEESDINDIKK 1325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 300 NVTSEVVHLSNKNEELCQELNEIDHLAQQLERHKeivLETADKEIGEAKKEIERKD----SEIQDLEETITRLK--SELS 373
Cdd:TIGR01612 1326 ELQKNLLDAQKHNSDINLYLNEIANIYNILKLNK---IKKIIDEVKEYTKEIEENNknikDELDKSEKLIKKIKddINLE 1402
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 374 SCRRQNErlseelfGKADDKENLELLLNQLEQEKQRLTEKTENFEIKERELVLEIERMRLEYGIALGD-KSPSRLDAFVK 452
Cdd:TIGR01612 1403 ECKSKIE-------STLDDKDIDECIKKIKELKNHILSEESNIDTYFKNADENNENVLLLFKNIEMADnKSQHILKIKKD 1475
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 453 TLEDDRDYYKREL-EYLQKMIKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRFekHMIEIQSNVKllTAERDRLNILY 531
Cdd:TIGR01612 1476 NATNDHDFNINELkEHIDKSKGCKDEADKNAKAIEKNKELFEQYKKDVTELLNKY--SALAIKNKFA--KTKKDSEIIIK 1551
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 532 EQsqselnrlrREAKHNLVSQSHVGEDgdasladfrrlmAEKESLREKLKIQQEAANLEKS-KMQHDISVLENNIQQFEL 610
Cdd:TIGR01612 1552 EI---------KDAHKKFILEAEKSEQ------------KIKEIKKEKFRIEDDAAKNDKSnKAAIDIQLSLENFENKFL 1610
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 611 ERCELKSTISILKERIKSLENELklkSSKLIQTSDdsSQLKAELCSLHLLNEQLQrTVEDLQHRFSLKKDELQSAQEEIV 690
Cdd:TIGR01612 1611 KISDIKKKINDCLKETESIEKKI---SSFSIDSQD--TELKENGDNLNSLQEFLE-SLKDQKKNIEDKKKELDELDSEIE 1684
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 691 KLE---------------EKI--------DRLNQKSTSQDEAVNVLRSTISVLDKEKDNLQETVDEKTEKIACLDDNLAN 747
Cdd:TIGR01612 1685 KIEidvdqhkknyeigiiEKIkeiaiankEEIESIKELIEPTIENLISSFNTNDLEGIDPNEKLEEYNTEIGDIYEEFIE 1764
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 748 KEKTITHLRLTLSELESSTDQLKDLLSSRDREISSL--RRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTRENQAV 825
Cdd:TIGR01612 1765 LYNIIAGCLETVSKEPITYDEIKNTRINAQNEFLKIieIEKKSKSYLDDIEAKEFDRIINHFKKKLDHVNDKFTKEYSKI 1844
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 826 SSELEDAIREKEEMKTRVhnyiTEVSRFESLIASKEKENQELLEKFRMLHTQAE-------------DWEIKAHQAEGES 892
Cdd:TIGR01612 1845 NEGFDDISKSIENVKNST----DENLLFDILNKTKDAYAGIIGKKYYSYKDEAEkifinisklansiNIQIQNNSGIDLF 1920
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 893 SSIRLELLS-VDTDRRHLRERVELLEKEIQEHMIAHQAYESQIssitkNMSKLEEDIKREHQDkssVLADLTSVRELCVK 971
Cdd:TIGR01612 1921 DNINIAILSsLDSEKEDTLKFIPSPEKEPEIYTKIRDSYDTLL-----DIFKKSQDLHKKEQD---TLNIIFENQQLYEK 1992
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 972 LEASKDlLSRQLASKSMDYEKVLGELEDVKSEAELLkKQLSSERltiQNLETLLATSRDKEFQNHLTSHEKDSEIQLLKD 1051
Cdd:TIGR01612 1993 IQASNE-LKDTLSDLKYKKEKILNDVKLLLHKFDEL-NKLSCDS---QNYDTILELSKQDKIKEKIDNYEKEKEKFGIDF 2067
|
1050 1060
....*....|....*....|....*....
gi 2024408242 1052 KLTLAEGKLSSHNREVSMLRSKVAQLQTD 1080
Cdd:TIGR01612 2068 DVKAMEEKFDNDIKDIEKFENNYKHSEKD 2096
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
205-787 |
1.56e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.72 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 205 RIQELQSEVTQLQEKLEISENGKKNYSKQVELRDKEIERLMLALDGGRShevislesRSKSNEKLIAQLNLQVEYLQQSN 284
Cdd:PRK02224 252 ELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLA--------EAGLDDADAEAVEARREELEDRD 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 285 KELENRIQDlldtkknvtsEVVHLSNKNEELCQELNEIDHLAQQLERHKEIVlETADKEIGEAKKEIERKDSEIQDLEET 364
Cdd:PRK02224 324 EELRDRLEE----------CRVAAQAHNEEAESLREDADDLEERAEELREEA-AELESELEEAREAVEDRREEIEELEEE 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 365 ItrlkselsscrrqnERLSEELFGKADDKENLELLLNQLEQEKQRLTEKtenfeIKERELVLEIERMRLEYGIALGDK-- 442
Cdd:PRK02224 393 I--------------EELRERFGDAPVDLGNAEDFLEELREERDELRER-----EAELEATLRTARERVEEAEALLEAgk 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 443 -----SPSRLDAFVKTLEDDRDyYKRELEYLQKMIKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRFEkhmieiqsnv 517
Cdd:PRK02224 454 cpecgQPVEGSPHVETIEEDRE-RVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLE---------- 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 518 KLLTAERDRLnilyEQSQSELNRLRREAkhnlvsqshvgEDGDASLADFRRLMAEKESLREKLKIQQEAANLEKSKMQHD 597
Cdd:PRK02224 523 ELIAERRETI----EEKRERAEELRERA-----------AELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKER 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 598 ISVLENNIQQFElERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAELcslhllneqlqrtvedLQHRFSL 677
Cdd:PRK02224 588 IESLERIRTLLA-AIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEF----------------DEARIEE 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 678 KKDELQSAQEEIVKLEEKIDRLNQKSTSqdeavnvLRSTISVLDKEKDNLQETVDEKTEkiaclddnLANKEKTITHLRL 757
Cdd:PRK02224 651 AREDKERAEEYLEQVEEKLDELREERDD-------LQAEIGAVENELEELEELRERREA--------LENRVEALEALYD 715
|
570 580 590
....*....|....*....|....*....|
gi 2024408242 758 TLSELESSTDQLKDLLssRDREISSLRRQL 787
Cdd:PRK02224 716 EAEELESMYGDLRAEL--RQRNVETLERML 743
|
|
| DUF724 |
pfam05266 |
Protein of unknown function (DUF724); This family contains several uncharacterized proteins ... |
287-363 |
1.65e-03 |
|
Protein of unknown function (DUF724); This family contains several uncharacterized proteins found in Arabidopsis thaliana and other plants. This region is often found associated with Agenet domains and may contain coiled-coil.
Pssm-ID: 428400 [Multi-domain] Cd Length: 188 Bit Score: 40.72 E-value: 1.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 287 LENRIQDLLDTKKNVTSEVVHLSNKNEELCQELNEIDHLAQQLERH---KEIVLETADKEIGEAKKEIERKDSEIQDLEE 363
Cdd:pfam05266 100 LKDRQTKLLEELKKLEKKIAEEESEKRKLEEEIDELEKKILELERQlalAKEKKEAADKEIARLKSEAEKLEQEIQDVEL 179
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
490-703 |
1.69e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 1.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 490 RLITRERDELQSMLDRFEKHMIEIQSNVklltaerdrlnilyEQSQSELNRLRReaKHNLVSQSHVGEDGDASLADFRRL 569
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKEL--------------EEAEAALEEFRQ--KNGLVDLSEEAKLLLQQLSELESQ 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 570 MAEKESLREKLKIQQEAANLEKSKMQHDISVLENNiqqfelercelkSTISILKERIKSLENELKLKSSKLIQTSDDSSQ 649
Cdd:COG3206 228 LAEARAELAEAEARLAALRAQLGSGPDALPELLQS------------PVIQQLRAQLAELEAELAELSARYTPNHPDVIA 295
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2024408242 650 LKAELCSL-HLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKS 703
Cdd:COG3206 296 LRAQIAALrAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELE 350
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
28-419 |
1.79e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.80 E-value: 1.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 28 ESLPLVEKLFSDLVHTTESLRSA--KLSAGKIEKECSnyDAIIEPYKTETAKLTRENNELHLEVLKLKEQSD------HH 99
Cdd:pfam15921 458 ESLEKVSSLTAQLESTKEMLRKVveELTAKKMTLESS--ERTVSDLTASLQEKERAIEATNAEITKLRSRVDlklqelQH 535
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 100 IKDLKASLRRAENEAADLRFLNNQYVHKIKLLEKESKAKTEKIQQlQEKNLQAVVQTPGGRKRNIPFRRQRMQidqpvpp 179
Cdd:pfam15921 536 LKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQ-HGRTAGAMQVEKAQLEKEINDRRLELQ------- 607
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 180 savsaypvpqpedpYIADLLQVADNRIQELQSEVTQLQekleisengkknySKQVELRDKEIERLMLALDGGRSHEVISL 259
Cdd:pfam15921 608 --------------EFKILKDKKDAKIRELEARVSDLE-------------LEKVKLVNAGSERLRAVKDIKQERDQLLN 660
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 260 ESRSKSNEkliaqLNLQVEYLQQSNKELENRIQDLLDTKKNVTsevVHLSNKNEELCQELNEIDHLaQQLERHKEIVLET 339
Cdd:pfam15921 661 EVKTSRNE-----LNSLSEDYEVLKRNFRNKSEEMETTTNKLK---MQLKSAQSELEQTRNTLKSM-EGSDGHAMKVAMG 731
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 340 ADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDKENLELLLNQLEQEKQRLTEKTENFEI 419
Cdd:pfam15921 732 MQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEV 811
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
555-786 |
1.85e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 1.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 555 VGEDGDASLADFRRLM-AEKESLREKLKIQQ----EAANLEKSKMQHDISVLENNIQQFELERCELKstISILKERIKSL 629
Cdd:COG4913 223 TFEAADALVEHFDDLErAHEALEDAREQIELlepiRELAERYAAARERLAELEYLRAALRLWFAQRR--LELLEAELEEL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 630 ENELKlksskliQTSDDSSQLKAELcslhllnEQLQRTVEDLQH-RFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDE 708
Cdd:COG4913 301 RAELA-------RLEAELERLEARL-------DALREELDELEAqIRGNGGDRLEQLEREIERLERELEERERRRARLEA 366
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2024408242 709 AVNVLRSTISVLDKEKDNLQETVDEKTEKIACLDDNLANKektithlrltLSELESSTDQLKDLLSSRDREISSLRRQ 786
Cdd:COG4913 367 LLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEA----------LAEAEAALRDLRRELRELEAEIASLERR 434
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
572-699 |
2.02e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.15 E-value: 2.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 572 EKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLK 651
Cdd:COG2433 389 ELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARSEERREIRKDREIS 468
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2024408242 652 AelcslhllneqLQRTVEDLQHrfslkkdELQSAQEEIVKLEEKIDRL 699
Cdd:COG2433 469 R-----------LDREIERLER-------ELEEERERIEELKRKLERL 498
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
556-803 |
2.38e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 2.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 556 GEDGDASLADFRRLMAEKESLREKLKIQQEAANLEKSKMQhDISVLENNIQQFELERCELKStisiLKERIKSLENELKl 635
Cdd:COG4913 605 GFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQ-ERREALQRLAEYSWDEIDVAS----AEREIAELEAELE- 678
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 636 kssKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKST----------- 704
Cdd:COG4913 679 ---RLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARlelralleerf 755
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 705 -------SQDEAVNVLRSTISVLDKEKDNLQETVDEKTEK--------IACLDDNLANKEKTITHL-RLTLSELESSTDQ 768
Cdd:COG4913 756 aaalgdaVERELRENLEERIDALRARLNRAEEELERAMRAfnrewpaeTADLDADLESLPEYLALLdRLEEDGLPEYEER 835
|
250 260 270
....*....|....*....|....*....|....*.
gi 2024408242 769 LKDLLSSR-DREISSLRRQLDASHTEIAEtgRVKEI 803
Cdd:COG4913 836 FKELLNENsIEFVADLLSKLRRAIREIKE--RIDPL 869
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
494-710 |
2.45e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 2.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 494 RERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAKhnlvsqshvgedgdASLADFRRLMAEK 573
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELA--------------ALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 574 ESLREKLKIQQEA-----ANLEKSKMQHDISVLENN------------IQQFELERCELKSTISILKERIKSLENELKLK 636
Cdd:COG4942 93 AELRAELEAQKEElaellRALYRLGRQPPLALLLSPedfldavrrlqyLKYLAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024408242 637 SSKLIQTSDDSSQLKAELCSLHllnEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAV 710
Cdd:COG4942 173 RAELEALLAELEEERAALEALK---AERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
487-733 |
2.60e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 42.20 E-value: 2.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 487 EDLRLITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQsqseLNRLRREAKHNLVSQSHVgedgdasladF 566
Cdd:PLN02939 156 EDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQ----LEKLRNELLIRGATEGLC----------V 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 567 RRLMAEKESLREKLKIQQEAANLEKSKMQHdISVLENNIQQFELERCELKSTISILKER-IKSLENELKLKSSKL----- 640
Cdd:PLN02939 222 HSLSKELDVLKEENMLLKDDIQFLKAELIE-VAETEERVFKLEKERSLLDASLRELESKfIVAQEDVSKLSPLQYdcwwe 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 641 ----IQTSDDSSQLKAELCSLHL-LNEQLQRTVEDLQ--------HRFSLKKDELQsaQEEIVKLEEKIDRLNQKSTSQ- 706
Cdd:PLN02939 301 kvenLQDLLDRATNQVEKAALVLdQNQDLRDKVDKLEaslkeanvSKFSSYKVELL--QQKLKLLEERLQASDHEIHSYi 378
|
250 260 270
....*....|....*....|....*....|..
gi 2024408242 707 ---DEAVNVLRSTISVLDKE--KDNLQETVDE 733
Cdd:PLN02939 379 qlyQESIKEFQDTLSKLKEEskKRSLEHPADD 410
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
252-1101 |
2.85e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.88 E-value: 2.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 252 RSHEVISLESRSKSNEKLIAQLNLQVEYLQQSNKELENRIQDLLDTKKNVTSEVVHLSNKNEELcqELNEIDHLAQQLER 331
Cdd:pfam02463 185 LAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRD--EQEEIESSKQEIEK 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 332 HKEIvLETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDKENLELLLNQLEQEKQRLT 411
Cdd:pfam02463 263 EEEK-LAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 412 EKTENFEIKERELVLEIERMRLEYGIALGDKspSRLDAFVKTLEDDRDYYKRELEYLQKMIKRRPSPSRRSPEKSEDLRL 491
Cdd:pfam02463 342 KELKELEIKREAEEEEEEELEKLQEKLEQLE--EELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLED 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 492 ITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAKHNLVSQSHVGEDGDASLADFRRLMA 571
Cdd:pfam02463 420 LLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERS 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 572 EKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLK 651
Cdd:pfam02463 500 QKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARK 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 652 AELCSLHLLNEQLQRTVEDLQHRFSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTISVLDKEKDNLQETV 731
Cdd:pfam02463 580 LRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLA 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 732 DEKTEKIACLDDNLANKEKTIThLRLTLSELESSTDQLKDLLSSRDREISSLRRQLDASHTEIAETGRVKEIALKENRRL 811
Cdd:pfam02463 660 EKSEVKASLSELTKELLEIQEL-QEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEEL 738
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 812 QddlatmtRENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKFRMLHTQAEDWEIKAHQAEGE 891
Cdd:pfam02463 739 K-------LLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELK 811
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 892 SSSIRLELLSVDTDRRHLRERVELLEKEIQEHMIAHQAYESQISSITKNMSKLEEDIKREHQDKSSVLADLTSVRELCVK 971
Cdd:pfam02463 812 EEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESK 891
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 972 LEASKDLLSRQLASKSMDYEKVLGELEDVKSEAELLKKQLSSERltiQNLETLLATSRDKEFQNHLTSHEKDSEIQLLKD 1051
Cdd:pfam02463 892 EEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEE---EPEELLLEEADEKEKEENNKEEEEERNKRLLLA 968
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|
gi 2024408242 1052 KLTLAEGKLsshnrevsMLRSKVAQLQTDYDVLKRQLTTERFERERAIQE 1101
Cdd:pfam02463 969 KEELGKVNL--------MAIEEFEEKEERYNKDELEKERLEEEKKKLIRA 1010
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
931-1104 |
2.89e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.54 E-value: 2.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 931 ESQISSITKNMSKLEEDIKREHQDKSSVLADLtsvRELCVKLEASKDLLSRQLASKSMDYEKVLGELEDVKSEAELLKKQ 1010
Cdd:PHA02562 194 QQQIKTYNKNIEEQRKKNGENIARKQNKYDEL---VEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSK 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 1011 LSserlTIQNLETLL--------ATSRDKEFQNHLTS-HEKDSEIQLLKDKLTLAEGKLSSHNREVSMLRSKVAQLQTDY 1081
Cdd:PHA02562 271 IE----QFQKVIKMYekggvcptCTQQISEGPDRITKiKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKI 346
|
170 180
....*....|....*....|...
gi 2024408242 1082 DVLKRQLTTERFERERAIQEMRR 1104
Cdd:PHA02562 347 STNKQSLITLVDKAKKVKAAIEE 369
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
605-778 |
3.62e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.29 E-value: 3.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 605 IQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRFSLKKD--EL 682
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNnkEY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 683 QSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTISVLDKEKDNLQETVDEKTEKiacLDDNLANKEKTITHLRLTLSEL 762
Cdd:COG1579 92 EALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAE---LDEELAELEAELEELEAEREEL 168
|
170
....*....|....*.
gi 2024408242 763 ESSTDqlKDLLSSRDR 778
Cdd:COG1579 169 AAKIP--PELLALYER 182
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
204-699 |
3.67e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.59 E-value: 3.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 204 NRIQELQSEVTQLQEKLEISENGKKNYSKQVELRDKEIERLMlaldgGRSHEVISLESRSKSNEKLIAQLNLQVEYLQQS 283
Cdd:PRK03918 238 EEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELE-----EKVKELKELKEKAEEYIKLSEFYEEYLDELREI 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 284 NKELE------NRIQDLLDTKKNVTSEVVHLSNKNEELCQELNEIDHLAQQLERHKEIV--------------LETADKE 343
Cdd:PRK03918 313 EKRLSrleeeiNGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKeelerlkkrltgltPEKLEKE 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 344 IGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEE-----LFGKADDKENLELLLNQLEQEKQRLTEKTENFE 418
Cdd:PRK03918 393 LEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAkgkcpVCGRELTEEHRKELLEEYTAELKRIEKELKEIE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 419 IKERELVLEIERMRLEYgialgdKSPSRLDAFVKTLEddrdyykrELEYLQKmiKRRPSPSRRSPEKSEDLRLITRERDE 498
Cdd:PRK03918 473 EKERKLRKELRELEKVL------KKESELIKLKELAE--------QLKELEE--KLKKYNLEELEKKAEEYEKLKEKLIK 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 499 LQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAKHNLVSQSHVGEDGDASLADFRRLMAEKESLRE 578
Cdd:PRK03918 537 LKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELER 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 579 KLKiQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISilKERIKSLENELKLKSSKLiqtsddsSQLKAELCSLH 658
Cdd:PRK03918 617 EEK-ELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYS--EEEYEELREEYLELSREL-------AGLRAELEELE 686
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 2024408242 659 LLNEQLQRTVEDLQHRfslkKDELQSAQEEIVKLEEKIDRL 699
Cdd:PRK03918 687 KRREEIKKTLEKLKEE----LEEREKAKKELEKLEKALERV 723
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
177-385 |
3.75e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.97 E-value: 3.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 177 VPPSAVSAYPVPQPEDPYIADL----------LQVADNRIQELQSEVTQLQEKLEISENGKKNYSKQVELRDKEIERLML 246
Cdd:COG3883 7 AAPTPAFADPQIQAKQKELSELqaeleaaqaeLDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERRE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 247 ALD--------GGRSHEVISLESRSKSNEKLIAQLNLqVEYLQQSNKELenrIQDLLDTKKNvtsevvhLSNKNEELCQE 318
Cdd:COG3883 87 ELGeraralyrSGGSVSYLDVLLGSESFSDFLDRLSA-LSKIADADADL---LEELKADKAE-------LEAKKAELEAK 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024408242 319 LNEIDHLAQQLERHKeivlETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEE 385
Cdd:COG3883 156 LAELEALKAELEAAK----AELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAA 218
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
202-386 |
4.99e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.58 E-value: 4.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 202 ADNRIQELQSEVTQLQEKLEISENGKKNYSKQVELRDKEIERLMLALDggrsheviSLESRSKSNEKLIAQLNLQVEYLQ 281
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELE--------ALQAEIDKLQAEIAEAEAEIEERR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 282 QsnkELENRIQDLLDTKKNVTSEVVHLSNKN---------------EELCQELNEIDHLAQQLERHKEiVLETADKEIGE 346
Cdd:COG3883 86 E---ELGERARALYRSGGSVSYLDVLLGSESfsdfldrlsalskiaDADADLLEELKADKAELEAKKA-ELEAKLAELEA 161
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2024408242 347 AKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEEL 386
Cdd:COG3883 162 LKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAEL 201
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
562-828 |
5.34e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 41.04 E-value: 5.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 562 SLADFRRLMAEKESLREKLKIQQ----EAANLEKSKMQHDISVlENNIQQFELERCELKSTISILKERIKSLENELKLKS 637
Cdd:PLN02939 154 ALEDLEKILTEKEALQGKINILEmrlsETDARIKLAAQEKIHV-EILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLK 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 638 SKLIQTSDDSSQLKAELCSLHLLNEQ----------LQRTVEDLQHRFSlkkdelqSAQEEIVKLEE-KIDRLNQKSTS- 705
Cdd:PLN02939 233 EENMLLKDDIQFLKAELIEVAETEERvfklekerslLDASLRELESKFI-------VAQEDVSKLSPlQYDCWWEKVENl 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 706 ---QDEAVNVLRSTISVLDKEKDnLQETVDEKTEKIaclddnlanKEKTITHLRLTLSELesstdqlkdllssRDREISS 782
Cdd:PLN02939 306 qdlLDRATNQVEKAALVLDQNQD-LRDKVDKLEASL---------KEANVSKFSSYKVEL-------------LQQKLKL 362
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 2024408242 783 LRRQLDASHTEIAETGRVKEIALKEnrrLQDDLATMTRENQAVSSE 828
Cdd:PLN02939 363 LEERLQASDHEIHSYIQLYQESIKE---FQDTLSKLKEESKKRSLE 405
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
828-1081 |
5.83e-03 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 40.83 E-value: 5.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 828 ELEDAIREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKFRMLHTQAEDWEI---KAHQAEGESSSIRLELLSVDT 904
Cdd:pfam05622 1 DLSEAQEEKDELAQRCHELDQQVSLLQEEKNSLQQENKKLQERLDQLESGDDSGTPggkKYLLLQKQLEQLQEENFRLET 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 905 DRRHLRERVELLEKEIQEhmIAHQAYESQISSITKNMSKLEEDIKREHQDKSSVL-ADLTSVRElcvKLEASKDLLS--R 981
Cdd:pfam05622 81 ARDDYRIKCEELEKEVLE--LQHRNEELTSLAEEAQALKDEMDILRESSDKVKKLeATVETYKK---KLEDLGDLRRqvK 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 982 QLASKSMDYEKVLGELEDVKSEAELLKKQLSSERLTIQNLETLLATSRDK----EFQNHlTSHEKDSEIQLLKDKLTLAE 1057
Cdd:pfam05622 156 LLEERNAEYMQRTLQLEEELKKANALRGQLETYKRQVQELHGKLSEESKKadklEFEYK-KLEEKLEALQKEKERLIIER 234
|
250 260
....*....|....*....|....
gi 2024408242 1058 GKLSSHNREVsmlrsKVAQLQTDY 1081
Cdd:pfam05622 235 DTLRETNEEL-----RCAQLQQAE 253
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
693-838 |
6.10e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 6.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024408242 693 EEKIDRLNQKSTSQDEAVNVLRSTISVLDKEKDNLQEtvdektekIACLDDNLANKEKTITHLRLTLSELESSTDQLKDL 772
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQE--------RREALQRLAEYSWDEIDVASAEREIAELEAELERL 680
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2024408242 773 LSSRDrEISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEE 838
Cdd:COG4913 681 DASSD-DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARL 745
|
|
| |
