|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
513-1286 |
2.59e-23 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 107.83 E-value: 2.59e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 513 QYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKI 592
Cdd:TIGR02168 243 ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 593 VAYSSIAAKNAELEQELMEKNEKIRSLETNINTEhekiclafekakkihLEQHKEMEKQIERLEAQLEKKDQQFKEQEKT 672
Cdd:TIGR02168 323 AQLEELESKLDELAEELAELEEKLEELKEELESL---------------EAELEELEAELEELESRLEELEEQLETLRSK 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 673 MSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSEEtikVRQLDSALEICKEELVLHLNQLEGNKE 752
Cdd:TIGR02168 388 VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKE---LQAELEELEEELEELQEELERLEEALE 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 753 KFEKQLKKKSEEVYCLQKELKIKN------HSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSK-LE 825
Cdd:TIGR02168 465 ELREELEEAEQALDAAERELAQLQarldslERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAaLG 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 826 QELQKQRESSAEKLRK----MEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMH 901
Cdd:TIGR02168 545 GRLQAVVVENLNAAKKaiafLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGG 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 902 LSQLDMIldQTKTELEKKTN---------------------AVKELEKLQHSTETELTEALQKREVLETELQNAHGELKS 960
Cdd:TIGR02168 625 VLVVDDL--DNALELAKKLRpgyrivtldgdlvrpggvitgGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAE 702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 961 TLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLdmtiREHRG 1040
Cdd:TIGR02168 703 LRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA----EEELA 778
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1041 EMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQE 1120
Cdd:TIGR02168 779 EAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1121 QYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLAEELGASKVRE 1200
Cdd:TIGR02168 859 AEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRI 938
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1201 AHLEARmqaeikklsaevesLKEAYHMEMISHQENHAKWKISADSQKSSVQQLNEQLEK-------AKLELEEAQDTVSN 1273
Cdd:TIGR02168 939 DNLQER--------------LSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKElgpvnlaAIEEYEELKERYDF 1004
|
810
....*....|...
gi 1034558170 1274 LHQQVQDRNEVIE 1286
Cdd:TIGR02168 1005 LTAQKEDLTEAKE 1017
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
645-1312 |
1.49e-21 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 102.44 E-value: 1.49e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 645 HKEMEKQIERLEAQLEKKdQQFKEQEKTMSMLQQDIICKQ--HHLESLDRLlTESKGEMKKENMKKDEALKALQNQVSEE 722
Cdd:TIGR02168 195 LNELERQLKSLERQAEKA-ERYKELKAELRELELALLVLRleELREELEEL-QEELKEAEEELEELTAELQELEEKLEEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 723 TIKVRQLDSALEICKEELvlhlNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQmlqq 802
Cdd:TIGR02168 273 RLEVSELEEEIEELQKEL----YALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEE---- 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 803 etirngELEDTQTKLEKQVSKLEqELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELS 882
Cdd:TIGR02168 345 ------KLEELKEELESLEAELE-ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRE 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 883 KMEKEIMHLKRDGENKAMHLSQldMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTL 962
Cdd:TIGR02168 418 RLQQEIEELLKKLEEAELKELQ--AELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLE 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 963 RQLQELRD-------VLQKA------------QLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDqALKERNWELKQ 1023
Cdd:TIGR02168 496 RLQENLEGfsegvkaLLKNQsglsgilgvlseLISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIA-FLKQNELGRVT 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1024 RAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESL------NDKLQNAKEQLREKEFIML-------- 1089
Cdd:TIGR02168 575 FLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlggvlvVDDLDNALELAKKLRPGYRivtldgdl 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1090 ------------QNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQ 1157
Cdd:TIGR02168 655 vrpggvitggsaKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD 734
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1158 QVQAQREIERLSSELEDMKQLSKEKDAHGNHLAEELGASKVREAHLEARMQ-----------------AEIKKLSAEVES 1220
Cdd:TIGR02168 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEeleaqieqlkeelkalrEALDELRAELTL 814
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1221 LKEAYH---MEMISHQENHAKWKISADSQKSSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLTKES 1297
Cdd:TIGR02168 815 LNEEAAnlrERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRS 894
|
730
....*....|....*
gi 1034558170 1298 ELTRLQAKISGHEKA 1312
Cdd:TIGR02168 895 ELEELSEELRELESK 909
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
603-1306 |
5.34e-20 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 97.05 E-value: 5.34e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 603 AELEQELMEKNEKIRSLETNINTEHEKiclAFEKAKKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIIC 682
Cdd:TIGR02168 209 AEKAERYKELKAELRELELALLVLRLE---ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 683 KQHHLESLDRLLTEskgeMKKENMKKDEALKALQNQVSEETIKVRQLDSALEICKEELVL---HLNQLEGNKEKFEKQLK 759
Cdd:TIGR02168 286 LQKELYALANEISR----LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAEleeKLEELKEELESLEAELE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 760 KKSEEvyclQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGE----LEDTQTKLEKQVSKLEQELQK-QRES 834
Cdd:TIGR02168 362 ELEAE----LEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEArlerLEDRRERLQQEIEELLKKLEEaELKE 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 835 SAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKaMHLSQLDMILDQTKT 914
Cdd:TIGR02168 438 LQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENL-EGFSEGVKALLKNQS 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 915 ELEKKTNAVKELEKLQHSTETELTEALQKR-EVLETELQNAHGELKSTLRQLQELR-----------DVLQKAQLSLEEK 982
Cdd:TIGR02168 517 GLSGILGVLSELISVDEGYEAAIEAALGGRlQAVVVENLNAAKKAIAFLKQNELGRvtflpldsikgTEIQGNDREILKN 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 983 YTTIKDLTAELRECKMEIEDKKQELL-------EMDQALKERNwELKQRAAQVTHLDMTIREH-------------RGEM 1042
Cdd:TIGR02168 597 IEGFLGVAKDLVKFDPKLRKALSYLLggvlvvdDLDNALELAK-KLRPGYRIVTLDGDLVRPGgvitggsaktnssILER 675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1043 EQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMesvmkeqEQY 1122
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL-------EER 748
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1123 IATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLAEELGASKVREAH 1202
Cdd:TIGR02168 749 IAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLES 828
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1203 LEARM----------QAEIKKLSAEVESLKEayhmEMISHQENHAKWKISADSQKSSVQQLNEQLEKAKLELEEAQDTVS 1272
Cdd:TIGR02168 829 LERRIaaterrledlEEQIEELSEDIESLAA----EIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELR 904
|
730 740 750
....*....|....*....|....*....|....
gi 1034558170 1273 NLHQQVQDRNEVIEAANEALLTKESELTRLQAKI 1306
Cdd:TIGR02168 905 ELESKRSELRRELEELREKLAQLELRLEGLEVRI 938
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
557-1306 |
1.12e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 92.81 E-value: 1.12e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 557 QEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKIRSLETNIntehekiclafek 636
Cdd:TIGR02168 238 REELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQK------------- 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 637 akKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQ 716
Cdd:TIGR02168 305 --QILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 717 NQVSEETIKVRQLDSaLEICKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQ 796
Cdd:TIGR02168 383 TLRSKVAQLELQIAS-LNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEE 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 797 QQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQ 876
Cdd:TIGR02168 462 ALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEA 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 877 YKEE---------LSKMEKEIMHLKRDGENKAMHLSqLDMILDQTKTEleKKTNAVKELEKLQHSTETELTEALQKREVL 947
Cdd:TIGR02168 542 ALGGrlqavvvenLNAAKKAIAFLKQNELGRVTFLP-LDSIKGTEIQG--NDREILKNIEGFLGVAKDLVKFDPKLRKAL 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 948 ETELQNAH--GELKSTLRQLQELR----------DVL----------QKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQ 1005
Cdd:TIGR02168 619 SYLLGGVLvvDDLDNALELAKKLRpgyrivtldgDLVrpggvitggsAKTNSSILERRREIEELEEKIEELEEKIAELEK 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1006 ELLEMDQALKERNWELKQRAAQVTHLDMTIREHR---GEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLR 1082
Cdd:TIGR02168 699 ALAELRKELEELEEELEQLRKELEELSRQISALRkdlARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELA 778
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1083 EKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQ 1162
Cdd:TIGR02168 779 EAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1163 REIERLSSELEdmkQLSKEKDAHGNHLAEELGASKVREAHLEArMQAEIKKLSAEVESLKEAYhmemishqenhakwkis 1242
Cdd:TIGR02168 859 AEIEELEELIE---ELESELEALLNERASLEEALALLRSELEE-LSEELRELESKRSELRREL----------------- 917
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034558170 1243 aDSQKSSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLTK-ESELTRLQAKI 1306
Cdd:TIGR02168 918 -EELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEaRRRLKRLENKI 981
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
512-1168 |
5.59e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 90.50 E-value: 5.59e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 512 KQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEK 591
Cdd:TIGR02168 305 QILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETL 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 592 IVAYS-------SIAAKNAELEQELMEKNEKIRSLETNINTEHEKICLAFEKAKKIHLEQHKEM----EKQIERLEAQLE 660
Cdd:TIGR02168 385 RSKVAqlelqiaSLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEEleelQEELERLEEALE 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 661 KKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLT--ESKGEMKKENMKKDEALKALQNQVSeETIKVrqlDSALEICKE 738
Cdd:TIGR02168 465 ELREELEEAEQALDAAERELAQLQARLDSLERLQEnlEGFSEGVKALLKNQSGLSGILGVLS-ELISV---DEGYEAAIE 540
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 739 E-LVLHLNQLEGNKEKFEKQ---LKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGEL---- 810
Cdd:TIGR02168 541 AaLGGRLQAVVVENLNAAKKaiaFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKalsy 620
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 811 --------EDTQTKLEKQVSK--------LEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEM 874
Cdd:TIGR02168 621 llggvlvvDDLDNALELAKKLrpgyrivtLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKAL 700
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 875 DQYKEELSKMEKEIMHLKRDGEnkamhlsQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNA 954
Cdd:TIGR02168 701 AELRKELEELEEELEQLRKELE-------ELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA 773
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 955 HGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQ---ALKERNWELKQRAAQVTHL 1031
Cdd:TIGR02168 774 EEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERriaATERRLEDLEEQIEELSED 853
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1032 DMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKE 1111
Cdd:TIGR02168 854 IESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEG 933
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*..
gi 1034558170 1112 MESVMKEQEQYIATQYKEAIDLGQELRLTREqvqnshTELAEARHQQVQAQREIERL 1168
Cdd:TIGR02168 934 LEVRIDNLQERLSEEYSLTLEEAEALENKIE------DDEEEARRRLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
112-893 |
2.55e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 88.58 E-value: 2.55e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 112 EIKSLREKLNKLRQQNACLVTQNHSLMTKFESIHFELTQSRAKVSMLESAQQQA--------ASVPILEEQIINLEAEVS 183
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELqkelyalaNEISRLEQQKQILRERLA 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 184 AQDKVLREAENKLEQSQKMVIEKEQSLQESKEECIKLKVDLLEQTKQGKRAERQRNEALYNAEELSKAFQQYKKKVAEKL 263
Cdd:TIGR02168 313 NLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 264 EKVQAEEEILERNltncekenkrlqercglyKSELEILKEKLRQLKEENNNGKEKLRIMAVKnsEVMAQLTESRQSILKL 343
Cdd:TIGR02168 393 LQIASLNNEIERL------------------EARLERLEDRRERLQQEIEELLKKLEEAELK--ELQAELEELEEELEEL 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 344 ESELENKDEILRDKFSLMNENRELKVRVAAQNERLDLCQQEIESSRVELRSLEKIISQLPLKRELF-GFKSYLSkyQMSS 422
Cdd:TIGR02168 453 QEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLsGILGVLS--ELIS 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 423 FSNKEDRCI----GCCEANKLVISELRIKLAI---KEAEIQKLH------ANLTANQLSQSLITCNDSQESSKLSSLETE 489
Cdd:TIGR02168 531 VDEGYEAAIeaalGGRLQAVVVENLNAAKKAIaflKQNELGRVTflpldsIKGTEIQGNDREILKNIEGFLGVAKDLVKF 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 490 PVK--------LGGHQVAESVKDQNQhtMNKQYeKERQRLVTGIEELRTK--LIQIEAENSDLKVnmahrtsqfqliqee 559
Cdd:TIGR02168 611 DPKlrkalsylLGGVLVVDDLDNALE--LAKKL-RPGYRIVTLDGDLVRPggVITGGSAKTNSSI--------------- 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 560 lLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKIRSLETNINTEHEKICLAFEKAKK 639
Cdd:TIGR02168 673 -LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ 751
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 640 IHLEQhKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIickqhhlesldrllteskGEMKKENMKKDEALKALQNQV 719
Cdd:TIGR02168 752 LSKEL-TELEAEIEELEERLEEAEEELAEAEAEIEELEAQI------------------EQLKEELKALREALDELRAEL 812
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 720 SEETIKVRQLDSALEICKEELVLHLNQLegnkEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQM 799
Cdd:TIGR02168 813 TLLNEEAANLRERLESLERRIAATERRL----EDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEA 888
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 800 LQQETIRNGELEDTQTKLEKQVSKLEQELQKQRessaEKLRKMEEKCESAaheadlkRQKVIELTGTAR-QVKIEMDQYK 878
Cdd:TIGR02168 889 LALLRSELEELSEELRELESKRSELRRELEELR----EKLAQLELRLEGL-------EVRIDNLQERLSeEYSLTLEEAE 957
|
810
....*....|....*
gi 1034558170 879 EELSKMEKEIMHLKR 893
Cdd:TIGR02168 958 ALENKIEDDEEEARR 972
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
915-1205 |
2.96e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 84.99 E-value: 2.96e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 915 ELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEkyttikdLTAELR 994
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYE-------LLAELA 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 995 ECKMEIEDKKQELLEMDQALKERNWELKQraaqvthldmtIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKL 1074
Cdd:COG1196 299 RLEQDIARLEERRRELEERLEELEEELAE-----------LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1075 QNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEA 1154
Cdd:COG1196 368 LEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA 447
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1034558170 1155 RHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLAEELGASKVREAHLEA 1205
Cdd:COG1196 448 AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE 498
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
809-1184 |
1.67e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 82.29 E-value: 1.67e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 809 ELEDTQTKLEKqVSKLEQELQKQRESsaeklrkmeekcesaaheadLKRQKvieltGTARQVKiemdQYKEELSKMEKEI 888
Cdd:COG1196 180 KLEATEENLER-LEDILGELERQLEP--------------------LERQA-----EKAERYR----ELKEELKELEAEL 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 889 MHLKRDgenkamhlsQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQEL 968
Cdd:COG1196 230 LLLKLR---------ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARL 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 969 RDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQvthldmtirehRGEMEQKIIK 1048
Cdd:COG1196 301 EQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAE-----------LAEAEEALLE 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1049 LEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYK 1128
Cdd:COG1196 370 AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE 449
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1034558170 1129 EAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDA 1184
Cdd:COG1196 450 EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEG 505
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1012-1319 |
1.79e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 82.29 E-value: 1.79e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1012 QALKErnwELKQRAAQVTHLDM-TIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQ 1090
Cdd:COG1196 216 RELKE---ELKELEAELLLLKLrELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYE 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1091 NEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSS 1170
Cdd:COG1196 293 LLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEA 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1171 ELEDMKQLSKEKDAHGNHLAEELGASKVREAHLEARMQAEIKKLsAEVESLKEAYHMEMISHQENHAKWKISADSQKSSV 1250
Cdd:COG1196 373 ELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERL-ERLEEELEELEEALAELEEEEEEEEEALEEAAEEE 451
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034558170 1251 QQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLTKESELTRLQAKISGHEKAEDIKFLP 1319
Cdd:COG1196 452 AELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLR 520
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
245-1119 |
9.16e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 80.10 E-value: 9.16e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 245 AEELSKAFQQYKK--KVAEKLEKVQAEEEILERnltncekenkrlqercGLYKSELEILKEKLRQLKEENNNGKEKLRIM 322
Cdd:TIGR02168 195 LNELERQLKSLERqaEKAERYKELKAELRELEL----------------ALLVLRLEELREELEELQEELKEAEEELEEL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 323 AVKNSEVMAQLTESRQSILKLESELENKDEILrdkFSLMNENRELKVRVAAQNERLDLCQQEIESSRVELRSLEKiisql 402
Cdd:TIGR02168 259 TAELQELEEKLEELRLEVSELEEEIEELQKEL---YALANEISRLEQQKQILRERLANLERQLEELEAQLEELES----- 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 403 plKRELFGFKSYLSKYQMSSFSNKEDRCIGCCEANKLVISELRIKLAIKEAEIQKLHANLTANQLSQSLITCNDSQESSK 482
Cdd:TIGR02168 331 --KLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEAR 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 483 LSSLEtepvklggHQVAESVKDQNQHTMNKQyEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLe 562
Cdd:TIGR02168 409 LERLE--------DRRERLQQEIEELLKKLE-EAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALD- 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 563 kasnssKLESEMTKKCSQLLTLEKQLEEkivaYSSIAAKNAELEQELMEKNEKIRSLETNINTEHEkiclaFEKAKKIHL 642
Cdd:TIGR02168 479 ------AAERELAQLQARLDSLERLQEN----LEGFSEGVKALLKNQSGLSGILGVLSELISVDEG-----YEAAIEAAL 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 643 EQHKEMeKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMK--KENMKKDEALKALQNQVS 720
Cdd:TIGR02168 544 GGRLQA-VVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGvaKDLVKFDPKLRKALSYLL 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 721 EETIKVRQLDSALEICKE------------ELVL------------HLNQLEGNKE--KFEKQLKKKSEEVYCLQKELKI 774
Cdd:TIGR02168 623 GGVLVVDDLDNALELAKKlrpgyrivtldgDLVRpggvitggsaktNSSILERRREieELEEKIEELEEKIAELEKALAE 702
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 775 KNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQRESsAEKLRKMEEKCESAAHEAD 854
Cdd:TIGR02168 703 LRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE-IEELEERLEEAEEELAEAE 781
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 855 LKRQkviELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTE 934
Cdd:TIGR02168 782 AEIE---ELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 935 TELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQAL 1014
Cdd:TIGR02168 859 AEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRI 938
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1015 KernwELKQRAAQVTHLDMtirehrGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLRE----KEFImlq 1090
Cdd:TIGR02168 939 D----NLQERLSEEYSLTL------EEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEElkerYDFL--- 1005
|
890 900
....*....|....*....|....*....
gi 1034558170 1091 nEQEISQLKKEIERTQQRMKEMESVMKEQ 1119
Cdd:TIGR02168 1006 -TAQKEDLTEAKETLEEAIEEIDREARER 1033
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
558-1102 |
3.81e-14 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 77.80 E-value: 3.81e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 558 EELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKIRSLETNINTEHEKICLAFEKA 637
Cdd:PRK03918 203 EEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKV 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 638 KKihLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRL------LTESKGEMKKENMKKDEA 711
Cdd:PRK03918 283 KE--LKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKeerleeLKKKLKELEKRLEELEER 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 712 LKALQN--QVSEETIKVRQLDSALEIckEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVIL 789
Cdd:PRK03918 361 HELYEEakAKKEELERLKKRLTGLTP--EKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKC 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 790 QHTLQQQQQMLQQETIRN------------GELEDTQTKLEKQVSKLEQELQKQRESSaeKLRKMEEKCESAahEADLKR 857
Cdd:PRK03918 439 PVCGRELTEEHRKELLEEytaelkriekelKEIEEKERKLRKELRELEKVLKKESELI--KLKELAEQLKEL--EEKLKK 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 858 QKVIELTGTARqvkiEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETEL 937
Cdd:PRK03918 515 YNLEELEKKAE----EYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEEL 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 938 TEALQKREvletELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMD-QALKE 1016
Cdd:PRK03918 591 EERLKELE----PFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEyEELRE 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1017 RNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSElELKECNKQIESLNDKLQNAKEQLRE-KEFIMLQNEQEI 1095
Cdd:PRK03918 667 EYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEERE-KAKKELEKLEKALERVEELREKVKKyKALLKERALSKV 745
|
....*..
gi 1034558170 1096 SQLKKEI 1102
Cdd:PRK03918 746 GEIASEI 752
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
559-1311 |
8.02e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 73.56 E-value: 8.02e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 559 ELLEKASNSSKLESEMTKKCSQLLTLEKQLEEkivAYSSIAAKNAELEQELMEKNEKIRSLEtnINTEHEKICL-AFEKA 637
Cdd:TIGR02169 157 KIIDEIAGVAEFDRKKEKALEELEEVEENIER---LDLIIDEKRQQLERLRREREKAERYQA--LLKEKREYEGyELLKE 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 638 KKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMsmlqqdiickqhhlESLDRLLTESKGEMKKenmKKDEALKALQN 717
Cdd:TIGR02169 232 KEALERQKEAIERQLASLEEELEKLTEEISELEKRL--------------EEIEQLLEELNKKIKD---LGEEEQLRVKE 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 718 QVSEETIKVRQLDSALEICKEELvlhlNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQ 797
Cdd:TIGR02169 295 KIGELEAEIASLERSIAEKEREL----EDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLR 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 798 QMLQQETIRNGELEDTQTKLEKQVSKLEQELQkqrESSAEKLRKMEEKCESAAHEADLkRQKVIELTGTARQVKIEMDQY 877
Cdd:TIGR02169 371 AELEEVDKEFAETRDELKDYREKLEKLKREIN---ELKRELDRLQEELQRLSEELADL-NAAIAGIEAKINELEEEKEDK 446
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 878 KEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGe 957
Cdd:TIGR02169 447 ALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHG- 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 958 lksTLRQLQELRDVLQKA------------------------QLSLEEK--------YTTIKDLTAELRECKME-IEDKK 1004
Cdd:TIGR02169 526 ---TVAQLGSVGERYATAievaagnrlnnvvveddavakeaiELLKRRKagratflpLNKMRDERRDLSILSEDgVIGFA 602
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1005 QELLEMDQALKERNWELKQRAAQVTHLDmTIREHRGEMeqKIIKLEGTL-EKSELELKECNKQIESLNDKLQNAKE--QL 1081
Cdd:TIGR02169 603 VDLVEFDPKYEPAFKYVFGDTLVVEDIE-AARRLMGKY--RMVTLEGELfEKSGAMTGGSRAPRGGILFSRSEPAElqRL 679
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1082 REKEFIMlqnEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNShtelaearhqqvqa 1161
Cdd:TIGR02169 680 RERLEGL---KRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEEL-------------- 742
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1162 QREIERLSSELEDMKQLSKEKDAHGNHLAEELGASKVREAHLEARM-QAEIKKLSAEVESLKEaYHMEmISHQENHAKWK 1240
Cdd:TIGR02169 743 EEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLsHSRIPEIQAELSKLEE-EVSR-IEARLREIEQK 820
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034558170 1241 ISADSQK-----SSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLTKESELTRLQAKISGHEK 1311
Cdd:TIGR02169 821 LNRLTLEkeyleKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEA 896
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
558-1185 |
1.31e-12 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 72.77 E-value: 1.31e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 558 EELLEKASNSS-KLESEMTKKCSQLLTLEKQLEEKIVAysSIAAKNAELEQELMEKNEKIRSLETNINTEHEkiclAFEK 636
Cdd:PRK02224 165 EEYRERASDARlGVERVLSDQRGSLDQLKAQIEEKEEK--DLHERLNGLESELAELDEEIERYEEQREQARE----TRDE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 637 AKKIhLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKkDEALKALQ 716
Cdd:PRK02224 239 ADEV-LEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDAD-AEAVEARR 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 717 NQVSEETIKVRQldsALEICKEELVLHLNQLEGNKEK---FEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTL 793
Cdd:PRK02224 317 EELEDRDEELRD---RLEECRVAAQAHNEEAESLREDaddLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEI 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 794 QQQQQMLQQETIRNGELED-------TQTKLEKQVSKLEQELQKQRESSAEKLRKMEE-KC-------ESAAH--EADLK 856
Cdd:PRK02224 394 EELRERFGDAPVDLGNAEDfleelreERDELREREAELEATLRTARERVEEAEALLEAgKCpecgqpvEGSPHveTIEED 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 857 RQKVIELTGtarqvkiEMDQYKEELSKMEKEIMHLKRdgenkamhlsqldmiLDQTKTELEKKTNAVKELEKLQHSTETE 936
Cdd:PRK02224 474 RERVEELEA-------ELEDLEEEVEEVEERLERAED---------------LVEAEDRIERLEERREDLEELIAERRET 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 937 LTEalqKREVLEtELQNAHGELKStlrQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIE--DKKQELLEMDQAL 1014
Cdd:PRK02224 532 IEE---KRERAE-ELRERAAELEA---EAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIEslERIRTLLAAIADA 604
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1015 KERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSelelkecnkQIESLNDKLQNAKEQLREKEFIMLQNEQE 1094
Cdd:PRK02224 605 EDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEA---------RIEEAREDKERAEEYLEQVEEKLDELREE 675
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1095 ISQLKKEIERTQQRMKEMESVMKEQE------QYIATQYKEAidlgqelrltrEQVQNSHTEL-AEARhqqvqaQREIER 1167
Cdd:PRK02224 676 RDDLQAEIGAVENELEELEELRERREalenrvEALEALYDEA-----------EELESMYGDLrAELR------QRNVET 738
|
650
....*....|....*...
gi 1034558170 1168 LSSELEDMKQLSKEKDAH 1185
Cdd:PRK02224 739 LERMLNETFDLVYQNDAY 756
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
512-1119 |
1.67e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 72.66 E-value: 1.67e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 512 KQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEK 591
Cdd:COG1196 242 EELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 592 IVAYSSIAAKNAELEQELMEKNEKIRSLEtninTEHEKICLAFEKAKKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEK 671
Cdd:COG1196 322 EEELAELEEELEELEEELEELEEELEEAE----EELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 672 TMSMLQQDIICKQHHLESLDRLLTEsKGEMKKENMKKDEALKALQNQVSEETIKVRQLDSALEICKEELVLHLNQLEGNK 751
Cdd:COG1196 398 LAAQLEELEEAEEALLERLERLEEE-LEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLE 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 752 EKFEKQLKKKSEEVycLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQ 831
Cdd:COG1196 477 AALAELLEELAEAA--ARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVE 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 832 RESSAEKLrkmeekcesAAHEADLKRQKVIELTGTARQVKiEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQ 911
Cdd:COG1196 555 DDEVAAAA---------IEYLKAAKAGRATFLPLDKIRAR-AALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLG 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 912 TKTELEKKTNAVKELEKLqhstETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTA 991
Cdd:COG1196 625 RTLVAARLEAALRRAVTL----AGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALL 700
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 992 ELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESL- 1070
Cdd:COG1196 701 AEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALg 780
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 1034558170 1071 --NdklQNAKEQLRE----KEFIMLQNEqeisQLKKEIERTQQRMKEMESVMKEQ 1119
Cdd:COG1196 781 pvN---LLAIEEYEEleerYDFLSEQRE----DLEEARETLEEAIEEIDRETRER 828
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
712-1306 |
2.90e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.89 E-value: 2.90e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 712 LKALQNQvSEETIKVRQLDSALEICK-EELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQnvilq 790
Cdd:COG1196 202 LEPLERQ-AEKAERYRELKEELKELEaELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLE----- 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 791 htlqqqqqmlqQETIRNgELEDTQTKLEKQVSKLEQeLQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQV 870
Cdd:COG1196 276 -----------LEELEL-ELEEAQAEEYELLAELAR-LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 871 KIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETE 950
Cdd:COG1196 343 EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEE 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 951 LQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECK---MEIEDKKQELLEMDQALKERNWELKQRAAQ 1027
Cdd:COG1196 423 LEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLeeaALLEAALAELLEELAEAAARLLLLLEAEAD 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1028 VTHLDMTIREHRGEMEQKIIKLEGTL----EKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIE 1103
Cdd:COG1196 503 YEGFLEGVKAALLLAGLRGLAGAVAVligvEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKI 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1104 RTQQRMKEMESVMKEQEQYIATQYkEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKD 1183
Cdd:COG1196 583 RARAALAAALARGAIGAAVDLVAS-DLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGS 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1184 AHGNHLAEELGASKVREAHLEARMQAEIKKLSAEVESLKEAYHMEMISHQEnhakwKISADSQKSSVQQLNEQLEKAKLE 1263
Cdd:COG1196 662 LTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEA-----EEERLEEELEEEALEEQLEAEREE 736
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 1034558170 1264 LEEAQDTVSNLHQQVQDRNEVIEAANEALltkESELTRLQAKI 1306
Cdd:COG1196 737 LLEELLEEEELLEEEALEELPEPPDLEEL---ERELERLEREI 776
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
552-1115 |
3.02e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.89 E-value: 3.02e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 552 QFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEkivayssIAAKNAELEQELMEKNEKIRSLETNINTEHEKIc 631
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEE-------LRLELEELELELEEAQAEEYELLAELARLEQDI- 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 632 lAFEKAKKIHLEQHK-EMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDE 710
Cdd:COG1196 305 -ARLEERRRELEERLeELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEE 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 711 ALKALQNQVSEETIKVRQLDSALEICKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQ 790
Cdd:COG1196 384 LAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLE 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 791 HTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQV 870
Cdd:COG1196 464 LLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAA 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 871 KIEMDQYK--EELSKMEKEIMHLKRDGENKAMHLSQLDM------ILDQTKTELEKKTNAVKELEKLQHSTETELTEALQ 942
Cdd:COG1196 544 LAAALQNIvvEDDEVAAAAIEYLKAAKAGRATFLPLDKIraraalAAALARGAIGAAVDLVASDLREADARYYVLGDTLL 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 943 KREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELK 1022
Cdd:COG1196 624 GRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEE 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1023 QRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKEcnkqieslndklqnAKEQLREKEFIMLQNEQEISQLKKEI 1102
Cdd:COG1196 704 EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLE--------------EEELLEEEALEELPEPPDLEELEREL 769
|
570
....*....|...
gi 1034558170 1103 ERTQQRMKEMESV 1115
Cdd:COG1196 770 ERLEREIEALGPV 782
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
512-1277 |
5.96e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 70.87 E-value: 5.96e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 512 KQYEKERQRLVTGIEELRTKLIQIEAENSDLkvnMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEK 591
Cdd:TIGR02169 180 EEVEENIERLDLIIDEKRQQLERLRREREKA---ERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 592 IVAYSSIAAKNAELEQELMEKNEKIRSLetninTEHEKICLafekAKKIHleqhkEMEKQIERLEAQLEKKDQQFKEQEK 671
Cdd:TIGR02169 257 TEEISELEKRLEEIEQLLEELNKKIKDL-----GEEEQLRV----KEKIG-----ELEAEIASLERSIAEKERELEDAEE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 672 TMSMLQQDIICKQHHLESLDRLLTESKGE---MKKENMKKDEALKALQNQVSEETIK---VRQLDSALEICKEELVLHLN 745
Cdd:TIGR02169 323 RLAKLEAEIDKLLAEIEELEREIEEERKRrdkLTEEYAELKEELEDLRAELEEVDKEfaeTRDELKDYREKLEKLKREIN 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 746 QLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSL----------------QETSEQNVILQHTLQQQQQMLQQETIRngE 809
Cdd:TIGR02169 403 ELKRELDRLQEELQRLSEELADLNAAIAGIEAKIneleeekedkaleikkQEWKLEQLAADLSKYEQELYDLKEEYD--R 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 810 LEDTQTKLEKQVSKLEQELQKQRESSAE--------------------KLRKMEEK----CESAAH--------EADLKR 857
Cdd:TIGR02169 481 VEKELSKLQRELAEAEAQARASEERVRGgraveevlkasiqgvhgtvaQLGSVGERyataIEVAAGnrlnnvvvEDDAVA 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 858 QKVIELtgtARQVKI---------EMDQYKEELSKMEKEIMH-------------------------LKRDGENKAMHLS 903
Cdd:TIGR02169 561 KEAIEL---LKRRKAgratflplnKMRDERRDLSILSEDGVIgfavdlvefdpkyepafkyvfgdtlVVEDIEAARRLMG 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 904 QLDM-------------ILDQTKTELEKKTNAVKELEKLQH------STETELTEALQKREVLETELQNAHGELKSTLRQ 964
Cdd:TIGR02169 638 KYRMvtlegelfeksgaMTGGSRAPRGGILFSRSEPAELQRlrerleGLKRELSSLQSELRRIENRLDELSQELSDASRK 717
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 965 LQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDM--------TIR 1036
Cdd:TIGR02169 718 IGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEArlshsripEIQ 797
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1037 EHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVM 1116
Cdd:TIGR02169 798 AELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAAL 877
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1117 KEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELedmKQLSKEKDAHGNHLAEELGAS 1196
Cdd:TIGR02169 878 RDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEEL---SEIEDPKGEDEEIPEEELSLE 954
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1197 KVreahlearmQAEIKKLSAEVESLKEayhMEMISHQEnhakWKISADSQKSsvqqLNEQLEKAKLELEEAQDTVSNLHQ 1276
Cdd:TIGR02169 955 DV---------QAELQRVEEEIRALEP---VNMLAIQE----YEEVLKRLDE----LKEKRAKLEEERKAILERIEEYEK 1014
|
.
gi 1034558170 1277 Q 1277
Cdd:TIGR02169 1015 K 1015
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
647-1221 |
3.19e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.42 E-value: 3.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 647 EMEKQIERLEAQLEK--KDQQFKEQEKtmsmlQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEA---LKALQNQVSE 721
Cdd:COG1196 197 ELERQLEPLERQAEKaeRYRELKEELK-----ELEAELLLLKLRELEAELEELEAELEELEAELEELeaeLAELEAELEE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 722 ETIKVRQLDSALEICKEELVLHLNQLEgnkeKFEKQLKKKSEEvyclqkelkIKNHSLQETSEQNVILQHTLQQQQQMLQ 801
Cdd:COG1196 272 LRLELEELELELEEAQAEEYELLAELA----RLEQDIARLEER---------RRELEERLEELEEELAELEEELEELEEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 802 QETIRNgELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKcESAAHEADLKRQKVIELTGTARQVKIEMDQYKEEL 881
Cdd:COG1196 339 LEELEE-ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEEL-EELAEELLEALRAAAELAAQLEELEEAEEALLERL 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 882 SKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKST 961
Cdd:COG1196 417 ERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLL 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 962 LRQLQELRDVLQKAQ-LSLEEKYTTIKDLTAELRECKMEIEDKKQELL----------EMDQALKERNWELKQRAAQVTH 1030
Cdd:COG1196 497 LEAEADYEGFLEGVKaALLLAGLRGLAGAVAVLIGVEAAYEAALEAALaaalqnivveDDEVAAAAIEYLKAAKAGRATF 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1031 LDMT---------IREHRGEMEQKIIKLEGTLEKSELELKECNKQIE---SLNDKLQNAKEQLREKEFIMLQNEQEISQL 1098
Cdd:COG1196 577 LPLDkiraraalaAALARGAIGAAVDLVASDLREADARYYVLGDTLLgrtLVAARLEAALRRAVTLAGRLREVTLEGEGG 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1099 KKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQL 1178
Cdd:COG1196 657 SAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREE 736
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 1034558170 1179 SKEKDAHGNHLAEELGASKVREAHLEARMQAEIKKLSAEVESL 1221
Cdd:COG1196 737 LLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
579-1224 |
4.92e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.65 E-value: 4.92e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 579 SQLLTLEKQleekivaySSIAAKNAELEQELMEKNE-----KIRSLETNINTEHEKIcLAFEKAKKIHLEQHKEMEKQIE 653
Cdd:COG1196 200 RQLEPLERQ--------AEKAERYRELKEELKELEAellllKLRELEAELEELEAEL-EELEAELEELEAELAELEAELE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 654 RLEAQLEKKDQQFKEQEKTMSMLQQDIIckqhHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSEETIKVRQLDSAL 733
Cdd:COG1196 271 ELRLELEELELELEEAQAEEYELLAELA----RLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEEL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 734 EICKEELVLHLNQLEGNKEKFEKQLKKKSEEvycLQKELKIKNHSLQETSEQNVILQHTLQQQQqmlqqetirngELEDT 813
Cdd:COG1196 347 EEAEEELEEAEAELAEAEEALLEAEAELAEA---EEELEELAEELLEALRAAAELAAQLEELEE-----------AEEAL 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 814 QTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKR 893
Cdd:COG1196 413 LERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 894 DGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALqkREVLETELQNAHGElksTLRQLQELRDVLQ 973
Cdd:COG1196 493 LLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAAL--EAALAAALQNIVVE---DDEVAAAAIEYLK 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 974 KAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERnwELKQRAAQVTHLDMTIREHRGEMEQKIIK-LEGT 1052
Cdd:COG1196 568 AAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREA--DARYYVLGDTLLGRTLVAARLEAALRRAVtLAGR 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1053 LEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAID 1132
Cdd:COG1196 646 LREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEA 725
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1133 LGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELE-DMKQLSKEKDAHG--NHLA-EELGASKVREAHLEarmq 1208
Cdd:COG1196 726 LEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELErELERLEREIEALGpvNLLAiEEYEELEERYDFLS---- 801
|
650
....*....|....*.
gi 1034558170 1209 AEIKKLSAEVESLKEA 1224
Cdd:COG1196 802 EQREDLEEARETLEEA 817
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1090-1325 |
6.13e-11 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 65.94 E-value: 6.13e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1090 QNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLS 1169
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1170 SELEDMKQLSkEKDAHGNHLAEELGASKVREAhleARMQAEIKKLSAEVESLKEayhmEMISHQENHAKWKISADSQKSS 1249
Cdd:COG4942 104 EELAELLRAL-YRLGRQPPLALLLSPEDFLDA---VRRLQYLKYLAPARREQAE----ELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034558170 1250 VQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLTKESELTRLQAKISGHEKAEDIKFLPAPFTSP 1325
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAAL 251
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
109-700 |
1.72e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.23 E-value: 1.72e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 109 VDQEIKSLREKLNKLRQQNACLVTQNHSLMTKFESIHFELTQSRAKVSML-ESAQQQAASVPILEEQIINLEAEVSAQDK 187
Cdd:TIGR02168 300 LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELkEELESLEAELEELEAELEELESRLEELEE 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 188 VLREAENKL--EQSQKMVIEKEQSLQESKEECIKLKVDLLEQTKQGKRAERQRNEALYNAEELSKafqqykkkVAEKLEK 265
Cdd:TIGR02168 380 QLETLRSKVaqLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEE--------LEEELEE 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 266 VQAEEEILERNLTNCEKENKRLQERCGLYKSELEILKEKLRQLK--EENNNGKEKLRIMAVKNSEVMAQLTESRQSILKL 343
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLErlQENLEGFSEGVKALLKNQSGLSGILGVLSELISV 531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 344 ESELE----------------NKDEILRDKFSLMNENRELKVRVAAQNerlDLCQQEIESSRVE--------LRSLEKII 399
Cdd:TIGR02168 532 DEGYEaaieaalggrlqavvvENLNAAKKAIAFLKQNELGRVTFLPLD---SIKGTEIQGNDREilkniegfLGVAKDLV 608
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 400 SQLPLKRELFGF------------------KSYLSKYQ--------------MSSFSNKEDRCIGCCEANklvISELRIK 447
Cdd:TIGR02168 609 KFDPKLRKALSYllggvlvvddldnalelaKKLRPGYRivtldgdlvrpggvITGGSAKTNSSILERRRE---IEELEEK 685
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 448 LAIKEAEIQKLHANLTANQLSQSLITCNDSQ-------ESSKLSSLETEPVKLGGHQVAESVKDQNQHTMNKQYEKERQR 520
Cdd:TIGR02168 686 IEELEEKIAELEKALAELRKELEELEEELEQlrkeleeLSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEE 765
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 521 LVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAA 600
Cdd:TIGR02168 766 LEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEE 845
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 601 KNAELEQELMEKNEKIRSLETNINTEHEKIclafekakKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDI 680
Cdd:TIGR02168 846 QIEELSEDIESLAAEIEELEELIEELESEL--------EALLNERASLEEALALLRSELEELSEELRELESKRSELRREL 917
|
650 660
....*....|....*....|
gi 1034558170 681 ICKQHHLESLDRLLTESKGE 700
Cdd:TIGR02168 918 EELREKLAQLELRLEGLEVR 937
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
647-1314 |
1.92e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 65.91 E-value: 1.92e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 647 EMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDE-ALKALQNQVSEETIK 725
Cdd:pfam15921 146 QLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSmSTMHFRSLGSAISKI 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 726 VRQLDSALEICKEELVLHLNQLEG----NKEKFEKQLKKKSEEVYCLQKELKIKNHSLQET-----SEQNVILQHTLQQQ 796
Cdd:pfam15921 226 LRELDTEISYLKGRIFPVEDQLEAlkseSQNKIELLLQQHQDRIEQLISEHEVEITGLTEKassarSQANSIQSQLEIIQ 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 797 QQMLQQETIRNGELEDtqtkLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQ 876
Cdd:pfam15921 306 EQARNQNSMYMRQLSD----LESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQK 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 877 YKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKL--------QHSTETELTEALQKREVLE 948
Cdd:pfam15921 382 LLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALlkamksecQGQMERQMAAIQGKNESLE 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 949 tELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQV 1028
Cdd:pfam15921 462 -KVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEG 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1029 THLDmtirehrgemeqkiiKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQR 1108
Cdd:pfam15921 541 DHLR---------------NVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLE 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1109 MKEMESVMKEQEQYIatqyKEAIDLGQELRLTREQVQNSHTELAEA----RHQQVQAQREIERLSSELEDMKQLSKEKDA 1184
Cdd:pfam15921 606 LQEFKILKDKKDAKI----RELEARVSDLELEKVKLVNAGSERLRAvkdiKQERDQLLNEVKTSRNELNSLSEDYEVLKR 681
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1185 HGNHLAEELGASKVREAHLEARMQAEIKKLSAEVESLKEAYHMEM---ISHQENHAKWKISADSQKSSVQQLNEQLEKAK 1261
Cdd:pfam15921 682 NFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMkvaMGMQKQITAKRGQIDALQSKIQFLEEAMTNAN 761
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|...
gi 1034558170 1262 LELEEAQDTVSNLHQQVQDRNEVIEAANEALLTKESELTRLQAKISGHEKAED 1314
Cdd:pfam15921 762 KEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALD 814
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
810-1314 |
4.32e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 64.70 E-value: 4.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 810 LEDTQTKLEKQVSKLEQELqKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQV---KIEMDQYKEELSKMEK 886
Cdd:PRK03918 167 LGEVIKEIKRRIERLEKFI-KRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLekeVKELEELKEEIEELEK 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 887 EIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLEtELQNAHGELKSTLRQLQ 966
Cdd:PRK03918 246 ELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLD-ELREIEKRLSRLEEEIN 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 967 ELRDVLQKAQlSLEEKYTTIKDLTAELRECKMEIEdKKQELLEMDQALKERNWELKQRAAQVTHLDM-----TIREHRGE 1041
Cdd:PRK03918 325 GIEERIKELE-EKEERLEELKKKLKELEKRLEELE-ERHELYEEAKAKKEELERLKKRLTGLTPEKLekeleELEKAKEE 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1042 MEQKIIKLE---GTLEKSELELKECNKQIESLNDKLQNAKEQLRE--KEFIMLQNEQEISQLKKEIERTQQRMKEMESVM 1116
Cdd:PRK03918 403 IEEEISKITariGELKKEIKELKKAIEELKKAKGKCPVCGRELTEehRKELLEEYTAELKRIEKELKEIEEKERKLRKEL 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1117 KEQEQYIATQ-----YKEAIDLGQELR-----LTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHG 1186
Cdd:PRK03918 483 RELEKVLKKEselikLKELAEQLKELEeklkkYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELE 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1187 NHLAEELGASKVREAHLEARMQAEIKKLSAEVESLKEAYhmemishqenhaKWKISADSQKSSVQQLNEQLEKAKLELEE 1266
Cdd:PRK03918 563 KKLDELEEELAELLKELEELGFESVEELEERLKELEPFY------------NEYLELKDAEKELEREEKELKKLEEELDK 630
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1267 AQDTVSNLHQQVQDRNEVIEAAN------------EALLTKESELTRLQAKISGHEKAED 1314
Cdd:PRK03918 631 AFEELAETEKRLEELRKELEELEkkyseeeyeelrEEYLELSRELAGLRAELEELEKRRE 690
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
634-1223 |
5.25e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 64.31 E-value: 5.25e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 634 FEKAKKIHLEQHKEMEKQIERLEAQLEKK---DQQFKEQEKTMSMLQQDIICKQHHLESLdrlltESKGEMKKENMKKDE 710
Cdd:PRK03918 160 YENAYKNLGEVIKEIKRRIERLEKFIKRTeniEELIKEKEKELEEVLREINEISSELPEL-----REELEKLEKEVKELE 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 711 ALKALQNQVSEETIKVRQLDSALEICKEELvlhlnqlegnkEKFEKQLKKKSEEVYCLQKELKiknhSLQETSEQNVILQ 790
Cdd:PRK03918 235 ELKEEIEELEKELESLEGSKRKLEEKIREL-----------EERIEELKKEIEELEEKVKELK----ELKEKAEEYIKLS 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 791 HTLQQQQQMLQqetirngELEDTQTKLEKQVSKLEQELQKqRESSAEKLRKMEEKCESAAHEADLKRQKViELTGTARQV 870
Cdd:PRK03918 300 EFYEEYLDELR-------EIEKRLSRLEEEINGIEERIKE-LEEKEERLEELKKKLKELEKRLEELEERH-ELYEEAKAK 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 871 KIEMDQYKEELS-----KMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTET---ELTEALQ 942
Cdd:PRK03918 371 KEELERLKKRLTgltpeKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVcgrELTEEHR 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 943 KREVLE--TELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKdltaeLRECKMEIEDKKQELLEMDQALKERNWE 1020
Cdd:PRK03918 451 KELLEEytAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIK-----LKELAEQLKELEEKLKKYNLEELEKKAE 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1021 LKQraaqvthldmTIREHRGEMEQKIIKLEGTLEKSEL---ELKECNKQIESLNDKLQNAKEQLREKEFimlqneqeisq 1097
Cdd:PRK03918 526 EYE----------KLKEKLIKLKGEIKSLKKELEKLEElkkKLAELEKKLDELEEELAELLKELEELGF----------- 584
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1098 lkKEIERTQQRMKEMESVMKEqeqyiatqYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQ 1177
Cdd:PRK03918 585 --ESVEELEERLKELEPFYNE--------YLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEK 654
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 1034558170 1178 LSKEKDahgnhlaeelgASKVREAHLEARMqaEIKKLSAEVESLKE 1223
Cdd:PRK03918 655 KYSEEE-----------YEELREEYLELSR--ELAGLRAELEELEK 687
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
810-1122 |
6.37e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 6.37e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 810 LEDTQTKLEKQVSKLEQELQKqressAEKLRKMEEKCESAAHEAdlkrqkvieLTGTARQVKIEMDQYKEELSKMEKEIM 889
Cdd:TIGR02168 191 LEDILNELERQLKSLERQAEK-----AERYKELKAELRELELAL---------LVLRLEELREELEELQEELKEAEEELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 890 HLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELR 969
Cdd:TIGR02168 257 ELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 970 DVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQ----- 1044
Cdd:TIGR02168 337 EELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERledrr 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1045 ----------KIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMES 1114
Cdd:TIGR02168 417 erlqqeieelLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER 496
|
....*...
gi 1034558170 1115 VMKEQEQY 1122
Cdd:TIGR02168 497 LQENLEGF 504
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
252-1122 |
7.59e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.93 E-value: 7.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 252 FQQYKKKVAEKLEKVQAEEEILErnltncekenkrlqercglykSELEILKEKLRQLKEEnnngKEKLrimavknsevma 331
Cdd:TIGR02169 168 FDRKKEKALEELEEVEENIERLD---------------------LIIDEKRQQLERLRRE----REKA------------ 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 332 qltESRQSILKLESELENKdEILRDKFSLMNENRELKVRVAAQNERLDLCQQEIESSRVELRSLEKIISQLPLKRELFGF 411
Cdd:TIGR02169 211 ---ERYQALLKEKREYEGY-ELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGE 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 412 KSYLS-KYQMSSFSNKEDRCIGCCEANKLVISELRIKLAIKEAEIQKLHANLTanQLSQSLitcndSQESSKLSSLETEp 490
Cdd:TIGR02169 287 EEQLRvKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIE--ELEREI-----EEERKRRDKLTEE- 358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 491 vklgghqvaesvkdqnqhtmnkqYEKERQRLvtgiEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKL 570
Cdd:TIGR02169 359 -----------------------YAELKEEL----EDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRL 411
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 571 ESEMTKKCSQLLTLEKQLEekivaysSIAAKNAELEQELMEKNEKIRSLETNINTEHEKIclafEKAKKihleQHKEMEK 650
Cdd:TIGR02169 412 QEELQRLSEELADLNAAIA-------GIEAKINELEEEKEDKALEIKKQEWKLEQLAADL----SKYEQ----ELYDLKE 476
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 651 QIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQ-------NQVSEET 723
Cdd:TIGR02169 477 EYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEvaagnrlNNVVVED 556
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 724 IKVRQldSALEICKEELVLHLNQLEGNKEKFEKQLKKKSEE----------VYCLQKELKIKNHSLQETSEQNVILQHTL 793
Cdd:TIGR02169 557 DAVAK--EAIELLKRRKAGRATFLPLNKMRDERRDLSILSEdgvigfavdlVEFDPKYEPAFKYVFGDTLVVEDIEAARR 634
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 794 QQQQQMLQ----------------QETIRNGELEDTQTKLE-KQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLK 856
Cdd:TIGR02169 635 LMGKYRMVtlegelfeksgamtggSRAPRGGILFSRSEPAElQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDA 714
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 857 RQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELE-KLQHSTET 935
Cdd:TIGR02169 715 SRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEaRLSHSRIP 794
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 936 ELTEALQKrevLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALK 1015
Cdd:TIGR02169 795 EIQAELSK---LEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELE 871
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1016 ERNWELKQRAAQVTHLDMTIREHR---GEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMlQNE 1092
Cdd:TIGR02169 872 ELEAALRDLESRLGDLKKERDELEaqlRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIP-EEE 950
|
890 900 910
....*....|....*....|....*....|.
gi 1034558170 1093 QEISQLKKEIERTQQRMKEMESV-MKEQEQY 1122
Cdd:TIGR02169 951 LSLEDVQAELQRVEEEIRALEPVnMLAIQEY 981
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
138-995 |
1.01e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 1.01e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 138 MTKFESIHFELtqsRAKVSMLESAQQQAASVPILEEQIINLEAEVSAQDkvLREAENKLEQSQKMVIEKEQSLQESKEEC 217
Cdd:TIGR02168 188 LDRLEDILNEL---ERQLKSLERQAEKAERYKELKAELRELELALLVLR--LEELREELEELQEELKEAEEELEELTAEL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 218 IKLKVDLLEQTKQGKRAERQRNEA---LYNAEELSKAFQQYKKKVAEKLEKVQAEEEILERNLTNCEKENKRLQERCGLY 294
Cdd:TIGR02168 263 QELEEKLEELRLEVSELEEEIEELqkeLYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 295 KSELEILKEKLRQLKEENNNGKEKLRIMAVKNSEVMAQLTESRQSILKLESELEnkdeilrdkfSLMNENRELKVRVAAQ 374
Cdd:TIGR02168 343 EEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIA----------SLNNEIERLEARLERL 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 375 NERLDLCQQEIESSRVELRSLEKiisqlplkrelfgfksylskyqmssfsnkeDRCIGCCEANKLVISELRIKLAIKEAE 454
Cdd:TIGR02168 413 EDRRERLQQEIEELLKKLEEAEL------------------------------KELQAELEELEEELEELQEELERLEEA 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 455 IQKLHANLTANQLSQSLITCNDSQESSKLSSLETEPVKLGGHQVAESVKDQNQHTMN-------------KQYEKE---- 517
Cdd:TIGR02168 463 LEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSgilgvlselisvdEGYEAAieaa 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 518 ----RQRLVTGIEELRTKLIQIEAENSDLKVNMahrtsqfqLIQEELLEKASNSSKLESEMTKKCSQ--LLTLEKQLEEK 591
Cdd:TIGR02168 543 lggrLQAVVVENLNAAKKAIAFLKQNELGRVTF--------LPLDSIKGTEIQGNDREILKNIEGFLgvAKDLVKFDPKL 614
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 592 IVAYSSIAA--KNAELEQELMEKNEKIRSLETNINTEHEKI----CLAFEKAKKIHLEQHKEMEkqIERLEAQLEKKDQQ 665
Cdd:TIGR02168 615 RKALSYLLGgvLVVDDLDNALELAKKLRPGYRIVTLDGDLVrpggVITGGSAKTNSSILERRRE--IEELEEKIEELEEK 692
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 666 FKEQEKTMSMLQQDIICKQHHLESLDRLLTEskgemkkenmkKDEALKALQNQVSEETIKVRQLDSALEICKEELVLHLN 745
Cdd:TIGR02168 693 IAELEKALAELRKELEELEEELEQLRKELEE-----------LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA 761
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 746 QLEGNKEKFEKqlkkkseevycLQKELKiknhslqetseqnvilqhtlqqqqqmlqqetirngELEDTQTKLEKQVSKLE 825
Cdd:TIGR02168 762 EIEELEERLEE-----------AEEELA-----------------------------------EAEAEIEELEAQIEQLK 795
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 826 QELQKQRESSAEklrkmeekcesaaheadlKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQL 905
Cdd:TIGR02168 796 EELKALREALDE------------------LRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESL 857
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 906 DMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTT 985
Cdd:TIGR02168 858 AAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVR 937
|
890
....*....|
gi 1034558170 986 IKDLTAELRE 995
Cdd:TIGR02168 938 IDNLQERLSE 947
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
497-1213 |
1.07e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 63.62 E-value: 1.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 497 QVAESVKDQNQHTMNKQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEEllEKASNSSKLESEMTK 576
Cdd:PTZ00121 1083 AKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEA--RKAEDAKRVEIARKA 1160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 577 KCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELmEKNEKIRSLETNINTEHEKiclAFEKAKKIHLEQHKEMEKQIErlE 656
Cdd:PTZ00121 1161 EDARKAEEARKAEDAKKAEAARKAEEVRKAEEL-RKAEDARKAEAARKAEEER---KAEEARKAEDAKKAEAVKKAE--E 1234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 657 AQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSEETIKVRQLDSALEIC 736
Cdd:PTZ00121 1235 AKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEA 1314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 737 KEELVLHLNQLEGNKE-----KFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELE 811
Cdd:PTZ00121 1315 KKADEAKKKAEEAKKKadaakKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAD 1394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 812 DTQTKLEKQVSKLEQELQKQRESS-AEKLRKMEE---KCESAAHEADLKRqKVIELTGTARQVKIEMDQYKEELSKMEKE 887
Cdd:PTZ00121 1395 EAKKKAEEDKKKADELKKAAAAKKkADEAKKKAEekkKADEAKKKAEEAK-KADEAKKKAEEAKKAEEAKKKAEEAKKAD 1473
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 888 IMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLET--ELQNAHGELKS-TLRQ 964
Cdd:PTZ00121 1474 EAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKadEAKKAEEKKKAdELKK 1553
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 965 LQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQEllemdQALKERNWELKQRAAQVthldmtirehRGEMEQ 1044
Cdd:PTZ00121 1554 AEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIE-----EVMKLYEEEKKMKAEEA----------KKAEEA 1618
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1045 KIIKLEgtLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYI- 1123
Cdd:PTZ00121 1619 KIKAEE--LKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKk 1696
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1124 -ATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLAEELGASKVREAH 1202
Cdd:PTZ00121 1697 eAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKE 1776
|
730
....*....|.
gi 1034558170 1203 LEARMQAEIKK 1213
Cdd:PTZ00121 1777 KEAVIEEELDE 1787
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
151-781 |
1.46e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.16 E-value: 1.46e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 151 SRAKVSMLESAQQQAASVPILEEQIINLEAEVSAQDKVLREAENKLEQSQKMV--------------IEKEQSLQESKEE 216
Cdd:TIGR02169 229 LKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIkdlgeeeqlrvkekIGELEAEIASLER 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 217 CIKLKVDLLEQT-KQGKRAERQRNEALYNAEELSKAFQQYKKKVA---EKLEKVQAEEEILERNLTNCEKENKRLQERCG 292
Cdd:TIGR02169 309 SIAEKERELEDAeERLAKLEAEIDKLLAEIEELEREIEEERKRRDkltEEYAELKEELEDLRAELEEVDKEFAETRDELK 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 293 LYKSELEILKEKLRQLKEENNNGKEKLRIMAVKNSEVMAQLTESRQSILKLESELENKDEILRDKFSLMNENRELKVRVA 372
Cdd:TIGR02169 389 DYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYE 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 373 AQNERLDLCQQEIESsrvELRSLEKIISQLPLKRELFGFKSYLSKYQMSSFSNK--------------EDRCIGCCEA-- 436
Cdd:TIGR02169 469 QELYDLKEEYDRVEK---ELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASiqgvhgtvaqlgsvGERYATAIEVaa 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 437 -----NKLVISELRIKLAIKEAEIQKL--HANLTANQLSQS------------------LITCNDSQESS---------- 481
Cdd:TIGR02169 546 gnrlnNVVVEDDAVAKEAIELLKRRKAgrATFLPLNKMRDErrdlsilsedgvigfavdLVEFDPKYEPAfkyvfgdtlv 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 482 --------------KLSSLETEPVKLGGHQVAESVKDQNQHTMNKQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMA 547
Cdd:TIGR02169 626 vedieaarrlmgkyRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLD 705
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 548 HRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKIRSLETNINT-- 625
Cdd:TIGR02169 706 ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDle 785
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 626 ---EHEKICLAFEKAKKIHlEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIickqhhlesldRLLTESKGEMK 702
Cdd:TIGR02169 786 arlSHSRIPEIQAELSKLE-EEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQR-----------IDLKEQIKSIE 853
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 703 KENMKKDEALKALQNQVSEETIKVRQLDSALEICK---EELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSL 779
Cdd:TIGR02169 854 KEIENLNGKKEELEEELEELEAALRDLESRLGDLKkerDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEEL 933
|
..
gi 1034558170 780 QE 781
Cdd:TIGR02169 934 SE 935
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
877-1290 |
1.65e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 62.75 E-value: 1.65e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 877 YKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQhsteTELTEALQKREVLETELQNAHG 956
Cdd:PRK02224 211 LESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLR----ETIAETEREREELAEEVRDLRE 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 957 ELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKK---QELLEMDQALKERNWELKQRAAqvthldm 1033
Cdd:PRK02224 287 RLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRvaaQAHNEEAESLREDADDLEERAE------- 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1034 TIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKefimlqnEQEISQLKKEIERTQQRMKEME 1113
Cdd:PRK02224 360 ELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNA-------EDFLEELREERDELREREAELE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1114 SVMKEQEQYIAtqykEAIDL---------GQELRLT---------REQVQNSHTELAEARHQQVQAQREIERLSSELEDM 1175
Cdd:PRK02224 433 ATLRTARERVE----EAEALleagkcpecGQPVEGSphvetieedRERVEELEAELEDLEEEVEEVEERLERAEDLVEAE 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1176 KQLSKEKDAHGNhlAEELGASKVREAHLEARMQAEIKKLSAEVESlkeayhmEMISHQENHAKWKISADSQKSSVQQLNE 1255
Cdd:PRK02224 509 DRIERLEERRED--LEELIAERRETIEEKRERAEELRERAAELEA-------EAEEKREAAAEAEEEAEEAREEVAELNS 579
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 1034558170 1256 QLEKAKLELE------EAQDTVSNLHQQVQDRNEVIEAANE 1290
Cdd:PRK02224 580 KLAELKERIEslerirTLLAAIADAEDEIERLREKREALAE 620
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
179-950 |
2.26e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.39 E-value: 2.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 179 EAEVSAQDKVLREAENKLEQSQKMVIEKEQSLQESKEEciklkvdLLEQTKQGKRAERQRNEAlynAEELSKAFQQYKKK 258
Cdd:TIGR02169 222 EYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEE-------ISELEKRLEEIEQLLEEL---NKKIKDLGEEEQLR 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 259 VAEKLEKVQAEEEILERNLTNCEKENKRLQERCGLYKSELEILKEKLRQLKEEnnngkekLRIMAVKNSEVMAQLTESRQ 338
Cdd:TIGR02169 292 VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELERE-------IEEERKRRDKLTEEYAELKE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 339 SILKLESELENKDEilrdkfslmnENRELKVRVAAQNERLDLCQQEIESSRVELRSLEKIISQLPLKRELFGFKSYLSKY 418
Cdd:TIGR02169 365 ELEDLRAELEEVDK----------EFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEA 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 419 QMSSFSNKEDRCIGCCEANKLVISELRIKLAIKEAEIQKLHANLtaNQLSQSLitcndSQESSKLSSLET-----EPVKL 493
Cdd:TIGR02169 435 KINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEY--DRVEKEL-----SKLQRELAEAEAqarasEERVR 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 494 GGHQVAESVKDQNQ--HTMNKQYEKERQRLVTGIE-------------------------------------------EL 528
Cdd:TIGR02169 508 GGRAVEEVLKASIQgvHGTVAQLGSVGERYATAIEvaagnrlnnvvveddavakeaiellkrrkagratflplnkmrdER 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 529 RTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCS-QLLTLEKQLEEK-------IVAYSSIAA 600
Cdd:TIGR02169 588 RDLSILSEDGVIGFAVDLVEFDPKYEPAFKYVFGDTLVVEDIEAARRLMGKyRMVTLEGELFEKsgamtggSRAPRGGIL 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 601 KNAELEQELMEKNEKIRSLETNINTEHEKIC----LAFEKAKKIHL--EQHKEMEKQIERLEAQLEKKDQQFKEQEKTMS 674
Cdd:TIGR02169 668 FSRSEPAELQRLRERLEGLKRELSSLQSELRrienRLDELSQELSDasRKIGEIEKEIEQLEQEEEKLKERLEELEEDLS 747
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 675 MLQQDIICKQHHLESLDrlltESKGEMKKENMKKDEALKALQNQVSEETIK-VRQLDSALEICKEELVLHLNQLEG--NK 751
Cdd:TIGR02169 748 SLEQEIENVKSELKELE----ARIEELEEDLHKLEEALNDLEARLSHSRIPeIQAELSKLEEEVSRIEARLREIEQklNR 823
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 752 EKFEKQ-LKKKSEEVYCLQKELKIKNHSLQETSEQNvilqhtlqqqqqmlqqetirNGELEDTQTKLEKQVSKLEQ---- 826
Cdd:TIGR02169 824 LTLEKEyLEKEIQELQEQRIDLKEQIKSIEKEIENL--------------------NGKKEELEEELEELEAALRDlesr 883
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 827 --ELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEimhlkrdgenkamhlSQ 904
Cdd:TIGR02169 884 lgDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEI---------------PE 948
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|...
gi 1034558170 905 LDMILDQTKTELEKKTNAVKELEKLQHSTETELTEAL-------QKREVLETE 950
Cdd:TIGR02169 949 EELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLkrldelkEKRAKLEEE 1001
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
646-1183 |
3.56e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 61.57 E-value: 3.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 646 KEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSEETIK 725
Cdd:TIGR04523 36 KQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKND 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 726 VRQldsaleicKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVilqhtlqqqqqmlqqeti 805
Cdd:TIGR04523 116 KEQ--------KNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKE------------------ 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 806 rngELEDTQTKLEKQVSKLEQELQKQR------ESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKE 879
Cdd:TIGR04523 170 ---ELENELNLLEKEKLNIQKNIDKIKnkllklELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTT 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 880 ELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVK----ELEKLQHSTETELTEALQKR-EVLETELQNA 954
Cdd:TIGR04523 247 EISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNqlksEISDLNNQKEQDWNKELKSElKNQEKKLEEI 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 955 HGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQEllemDQALKERNWELKQRAAQVTHLDMT 1034
Cdd:TIGR04523 327 QNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKE----NQSYKQEIKNLESQINDLESKIQN 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1035 IREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMES 1114
Cdd:TIGR04523 403 QEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQ 482
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034558170 1115 VMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKD 1183
Cdd:TIGR04523 483 NLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDD 551
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
111-661 |
4.70e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.11 E-value: 4.70e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 111 QEIKSLREKLNKLRQQnacLVTQNHSLMTKFESIHFELTQSRAKVSMLESAQQQAASvpiLEEQIINLEAEVSAQDKVLR 190
Cdd:COG1196 274 LELEELELELEEAQAE---EYELLAELARLEQDIARLEERRRELEERLEELEEELAE---LEEELEELEEELEELEEELE 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 191 EAENKLEQSQKMVIEKEQSLQESKEECIKLKVDLLEQTKQGKRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKVQAEE 270
Cdd:COG1196 348 EAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 271 EILERNLTNCEKENKRLQERcglyKSELEILKEKLRQLKEENNNGKEKLRIMAVKNSEVMAQLTESRQSILKLESELENK 350
Cdd:COG1196 428 EALAELEEEEEEEEEALEEA----AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 351 DEILRDKFSLMNENRELKVRVAAQNERLDlcqqEIESSRVELRSLEKIISQLPLKRElfgfksylskyqmssfsNKEDRC 430
Cdd:COG1196 504 EGFLEGVKAALLLAGLRGLAGAVAVLIGV----EAAYEAALEAALAAALQNIVVEDD-----------------EVAAAA 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 431 IGCCEANKLVISELRIKLAIKEAEIQKLHANLTANQLSQSLITCNDSQESSKLSSLetepvklgghQVAESVKDQNQHTM 510
Cdd:COG1196 563 IEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVL----------GDTLLGRTLVAARL 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 511 nkqyEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEE 590
Cdd:COG1196 633 ----EAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERE 708
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034558170 591 KIVAYSSIAAKNAELEQELMEKNEKIRSLEtNINTEHEKICLAFEKAKKIHLEQHKEMEKQIERLEAQLEK 661
Cdd:COG1196 709 LAEAEEERLEEELEEEALEEQLEAEREELL-EELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
936-1315 |
4.84e-09 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 60.94 E-value: 4.84e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 936 ELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLE--EKYTTIKDLTAELRECKMEIEDKKQELlemdQA 1013
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEklEKLLQLLPLYQELEALEAELAELPERL----EE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1014 LKERNWELKQRAAQVTHLDMTIREHRGEMEQKiikLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQ 1093
Cdd:COG4717 151 LEERLEELRELEEELEELEAELAELQEELEEL---LEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEE 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1094 EISQLKKEIERTQ--QRMKEMESV------------MKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQV 1159
Cdd:COG4717 228 ELEQLENELEAAAleERLKEARLLlliaaallallgLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEEL 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1160 QAQREIERLSSE--LEDMKQLSKEKDAHGNHLAEELG-ASKVREAHLEARM---QAEIKKLSAEVESLKEAYHMEMISHQ 1233
Cdd:COG4717 308 QALPALEELEEEelEELLAALGLPPDLSPEELLELLDrIEELQELLREAEEleeELQLEELEQEIAALLAEAGVEDEEEL 387
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1234 ENHAKWKISADSQKSSVQQLNEQLEKAKLELEEAQDTVS--NLHQQVQDRNEVIEAANEALLTKESELTRLQAKISGHEK 1311
Cdd:COG4717 388 RAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDeeELEEELEELEEELEELEEELEELREELAELEAELEQLEE 467
|
....
gi 1034558170 1312 AEDI 1315
Cdd:COG4717 468 DGEL 471
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
558-1301 |
5.05e-09 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 61.14 E-value: 5.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 558 EELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKIRSLETNINTEHEKICLAFEKA 637
Cdd:pfam02463 176 KKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIES 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 638 KKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEALK---- 713
Cdd:pfam02463 256 SKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKkeke 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 714 ---ALQNQVSEETIKVRQLDSALEICKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQ 790
Cdd:pfam02463 336 eieELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELAR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 791 HTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQRESSAEKLR--KMEEKCESAAHEADLKRQKVIELTGTAR 868
Cdd:pfam02463 416 QLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELelKKSEDLLKETQLVKLQEQLELLLSRQKL 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 869 QVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLD----------MILDQTKTELEKKTNAVKELEKLQHSTETELT 938
Cdd:pfam02463 496 EERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDlgvavenykvAISTAVIVEVSATADEVEERQKLVRALTELPL 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 939 EALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERN 1018
Cdd:pfam02463 576 GARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLE 655
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1019 WELKQRA-AQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQ 1097
Cdd:pfam02463 656 EGLAEKSeVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKIN 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1098 LKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQ 1177
Cdd:pfam02463 736 EELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAE 815
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1178 LSKEKDAHGNHLAEELgASKVREAHLEARMQAEIKKLSAEVESLKEAYHMEMISHQENHAKWKISADSQKSSVQQLNEQL 1257
Cdd:pfam02463 816 LLEEEQLLIEQEEKIK-EEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEK 894
|
730 740 750 760
....*....|....*....|....*....|....*....|....
gi 1034558170 1258 EKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLTKESELTR 1301
Cdd:pfam02463 895 EKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPE 938
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
932-1138 |
6.25e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 59.78 E-value: 6.25e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 932 STETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMD 1011
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1012 QALKERNWELkQRAAQVTHLDMTIR-EHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQ 1090
Cdd:COG4942 104 EELAELLRAL-YRLGRQPPLALLLSpEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAE 182
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1034558170 1091 NEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELR 1138
Cdd:COG4942 183 LEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIA 230
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
816-1305 |
9.31e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 60.03 E-value: 9.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 816 KLEKQVSKLEQELQKQRESSAEKLRKMEEKcesaAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDG 895
Cdd:TIGR04523 121 KLEVELNKLEKQKKENKKNIDKFLTEIKKK----EKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKL 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 896 ENKAMHLSQLDMiLDQTKTELEKKTNavkELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKA 975
Cdd:TIGR04523 197 LKLELLLSNLKK-KIQKNKSLESQIS---ELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEK 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 976 QLSLEEKYTTIKDLTAELRECKMEIEDKKQE--------------------------LLEMDQALKERNWELKQRAAQVT 1029
Cdd:TIGR04523 273 QKELEQNNKKIKELEKQLNQLKSEISDLNNQkeqdwnkelkselknqekkleeiqnqISQNNKIISQLNEQISQLKKELT 352
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1030 HLDMTIREHRGEMEQK---IIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQ 1106
Cdd:TIGR04523 353 NSESENSEKQRELEEKqneIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLK 432
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1107 QRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHG 1186
Cdd:TIGR04523 433 ETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKV 512
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1187 NHLAEELGASKVREAHLEarmqAEIKKLSAEVESLKEayHMEMISHQENHAKWKISADSQKSSVQQLNEQLEKAKLELEE 1266
Cdd:TIGR04523 513 KDLTKKISSLKEKIEKLE----SEKKEKESKISDLED--ELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEE 586
|
490 500 510
....*....|....*....|....*....|....*....
gi 1034558170 1267 AQDTVSNLHQQVQDRNEVIEAANEALLTKESELTRLQAK 1305
Cdd:TIGR04523 587 KQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKE 625
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
441-972 |
1.01e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.34 E-value: 1.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 441 ISELRIKLAIKEAEIQKLHANLTANQLSQSLITCNDSQESSKLSSLETEpvklgghqVAESVKDQN-QHTMNKQYEKERQ 519
Cdd:COG1196 248 LEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE--------LARLEQDIArLEERRRELEERLE 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 520 RLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIA 599
Cdd:COG1196 320 ELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELA 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 600 AKNAELEQELMEKNEKIRSLETNINTEHEKIcLAFEKAKKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQD 679
Cdd:COG1196 400 AQLEELEEAEEALLERLERLEEELEELEEAL-AELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAA 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 680 IICKQHHLESLDRLLtESKGEMKKENMKKDEALKALQN---------QVSEETIKVRQLDSALEICKEELVLHLN-QLEG 749
Cdd:COG1196 479 LAELLEELAEAAARL-LLLLEAEADYEGFLEGVKAALLlaglrglagAVAVLIGVEAAYEAALEAALAAALQNIVvEDDE 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 750 NKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTqTKLEKQVSKLEQELQ 829
Cdd:COG1196 558 VAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDT-LLGRTLVAARLEAAL 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 830 KQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMIL 909
Cdd:COG1196 637 RRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEER 716
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1034558170 910 DQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVL 972
Cdd:COG1196 717 LEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1035-1224 |
1.78e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 58.24 E-value: 1.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1035 IREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMES 1114
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLR 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1115 VMKEQEQ---------------------YIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELE 1173
Cdd:COG4942 112 ALYRLGRqpplalllspedfldavrrlqYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALE 191
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1034558170 1174 DMKQlskEKDAHGNHLAEELGASKVREAHL---EARMQAEIKKLSAEVESLKEA 1224
Cdd:COG4942 192 ALKA---ERQKLLARLEKELAELAAELAELqqeAEELEALIARLEAEAAAAAER 242
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1095-1314 |
1.84e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.18 E-value: 1.84e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1095 ISQLKKEIERTQQRMKEMES-------VMKEQEQYI---------ATQYKE---------AIDLGQELRLTREQVQNSHT 1149
Cdd:COG1196 167 ISKYKERKEEAERKLEATEEnlerledILGELERQLeplerqaekAERYRElkeelkeleAELLLLKLRELEAELEELEA 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1150 ELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLAEELGASKVREAHLEARMQAEIKKLSAEVESLKEAyHMEM 1229
Cdd:COG1196 247 ELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEEL-EEEL 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1230 ISHQENHAKWKISADSQKSSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLTKESELTRLQAKISGH 1309
Cdd:COG1196 326 AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL 405
|
....*
gi 1034558170 1310 EKAED 1314
Cdd:COG1196 406 EEAEE 410
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
985-1299 |
1.84e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 59.54 E-value: 1.84e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 985 TIKDLTAELRECKMEIEDKKQELLEM---------DQALkernwELKQRAA---QVTHLDMTIREH---RGEMEQKIIKL 1049
Cdd:COG4913 156 DIRALKARLKKQGVEFFDSFSAYLARlrrrlgigsEKAL-----RLLHKTQsfkPIGDLDDFVREYmleEPDTFEAADAL 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1050 EG---TLEKSELELKECNKQIESL------NDKLQNAKEQLREKEFIM-----LQNEQEISQLKKEIERTQQRMKEMEsv 1115
Cdd:COG4913 231 VEhfdDLERAHEALEDAREQIELLepirelAERYAAARERLAELEYLRaalrlWFAQRRLELLEAELEELRAELARLE-- 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1116 mkEQEQyiatqykeaiDLGQELRLTREQVQNSHTELAEARHQQVQA-QREIERLSSELEDMKQLSKEKDAhgnhLAEELG 1194
Cdd:COG4913 309 --AELE----------RLEARLDALREELDELEAQIRGNGGDRLEQlEREIERLERELEERERRRARLEA----LLAALG 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1195 ASKVREAHLEARMQAEIKKLSAEVESLKEAYHMEmishqenhakwkisADSQKSSVQQLNEQLEKAKLELEEAQDTVSNL 1274
Cdd:COG4913 373 LPLPASAEEFAALRAEAAALLEALEEELEALEEA--------------LAEAEAALRDLRRELRELEAEIASLERRKSNI 438
|
330 340
....*....|....*....|....*
gi 1034558170 1275 HQQVQdrnEVIEAANEALLTKESEL 1299
Cdd:COG4913 439 PARLL---ALRDALAEALGLDEAEL 460
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
721-1319 |
3.00e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.54 E-value: 3.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 721 EETIKVRQLDSALEICKEELvlhlNQLEGNKEKFEKQLKKKSEEVYCLQKEL--KIKNHSLQETSEQNVILQHTLQQQQQ 798
Cdd:TIGR02169 160 DEIAGVAEFDRKKEKALEEL----EEVEENIERLDLIIDEKRQQLERLRRERekAERYQALLKEKREYEGYELLKEKEAL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 799 MLQQETIRN--GELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESaahEADLKRQKVIELTGTARQVKIEMDQ 876
Cdd:TIGR02169 236 ERQKEAIERqlASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEE---EQLRVKEKIGELEAEIASLERSIAE 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 877 YKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKlqhstetELTEALQKREVLETELQNAHG 956
Cdd:TIGR02169 313 KERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKE-------ELEDLRAELEEVDKEFAETRD 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 957 ELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVthldMTIR 1036
Cdd:TIGR02169 386 ELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKL----EQLA 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1037 EHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLRE----KEFIMLQNEQEISQLKKEIERTQQRMKEM 1112
Cdd:TIGR02169 462 ADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGgravEEVLKASIQGVHGTVAQLGSVGERYATAI 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1113 ESVMKEQEQYIATQ----YKEAIDLGQELRLTR------EQVQNSHTEL----------------------AEARHQQVQ 1160
Cdd:TIGR02169 542 EVAAGNRLNNVVVEddavAKEAIELLKRRKAGRatflplNKMRDERRDLsilsedgvigfavdlvefdpkyEPAFKYVFG 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1161 AQREIERLSSELEDMKQ----------LSKEKDAHGNHLAEELGAS-KVREAHLEARMQAEIKKLSAEVESLkeayhMEM 1229
Cdd:TIGR02169 622 DTLVVEDIEAARRLMGKyrmvtlegelFEKSGAMTGGSRAPRGGILfSRSEPAELQRLRERLEGLKRELSSL-----QSE 696
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1230 ISHQENH---AKWKISADSQKSS-----VQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLTKESELTR 1301
Cdd:TIGR02169 697 LRRIENRldeLSQELSDASRKIGeiekeIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHK 776
|
650
....*....|....*...
gi 1034558170 1302 LQAKISGHEKAEDIKFLP 1319
Cdd:TIGR02169 777 LEEALNDLEARLSHSRIP 794
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
111-402 |
3.11e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 3.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 111 QEIKSLREKLNKLRQQNACLVTQNHSLMTKFESIHFELTQSRAKVSMLE-SAQQQAASVPILEEQIINLEAEVSAQDKVL 189
Cdd:TIGR02168 740 AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEaQIEQLKEELKALREALDELRAELTLLNEEA 819
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 190 REAENKLEQSQKMVIEKEQSLQESKEECIKLKVDLLEQTKQGKRAERQRNEALYNAEELSKAF---QQYKKKVAEKLEKV 266
Cdd:TIGR02168 820 ANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERaslEEALALLRSELEEL 899
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 267 QAEEEILERNLTNCEKENKRLQERCGLYKSELEILKEKLRQLKEE-NNNGKEKLRIMAVKNSEVMAQLTESRQSILKLES 345
Cdd:TIGR02168 900 SEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERlSEEYSLTLEEAEALENKIEDDEEEARRRLKRLEN 979
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1034558170 346 ELENKDEIlrdKFSLMNENRELKvrvaaqnERLDLCQQEIESSRVELRSLEKIISQL 402
Cdd:TIGR02168 980 KIKELGPV---NLAAIEEYEELK-------ERYDFLTAQKEDLTEAKETLEEAIEEI 1026
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
562-1146 |
5.20e-08 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 57.88 E-value: 5.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 562 EKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKIRSLETNINTEHEKiclAFEKAKKIH 641
Cdd:pfam01576 19 ERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEILHELESRLEE---EEERSQQLQ 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 642 LEQhKEMEKQIERLEAQLEkkdqqfkEQEKTMSMLQQDIICKQHHLESLDR---LLTESKGEMKKENMKKDEALKALQNQ 718
Cdd:pfam01576 96 NEK-KKMQQHIQDLEEQLD-------EEEAARQKLQLEKVTTEAKIKKLEEdilLLEDQNSKLSKERKLLEERISEFTSN 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 719 VSEETIKVR---QLDSALEICKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQ 795
Cdd:pfam01576 168 LAEEEEKAKslsKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQA 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 796 QQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQR--ESSAEKLRK------------MEEKCESAAHEADLKRQKVI 861
Cdd:pfam01576 248 ALARLEEETAQKNNALKKIRELEAQISELQEDLESERaaRNKAEKQRRdlgeelealkteLEDTLDTTAAQQELRSKREQ 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 862 ELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNavkELEKLQHSTETELTEAL 941
Cdd:pfam01576 328 EVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENA---ELQAELRTLQQAKQDSE 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 942 QKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKErnwEL 1021
Cdd:pfam01576 405 HKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQE---ET 481
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1022 KQRAAQVTHLDMTIREHRGEMEQkiiklegtLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKE 1101
Cdd:pfam01576 482 RQKLNLSTRLRQLEDERNSLQEQ--------LEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRE 553
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 1034558170 1102 IERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQN 1146
Cdd:pfam01576 554 LEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSN 598
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
500-1076 |
6.26e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 57.82 E-value: 6.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 500 ESVKDQNQHTMNKQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKAS----NSSKLESEMT 575
Cdd:pfam15921 248 EALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSmymrQLSDLESTVS 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 576 KKCSQLLTLEKQLEEKIvayssiaaknAELEQELMEKNEKIrsleTNINTEHEKIClafekakkihlEQHKEMEKQIERL 655
Cdd:pfam15921 328 QLRSELREAKRMYEDKI----------EELEKQLVLANSEL----TEARTERDQFS-----------QESGNLDDQLQKL 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 656 EAQLEKKDQQF---KEQEK-----------TMSMLQQDIICKQHHLESLDRLLTESKGEMKKEnmkKDEALKALQNQvSE 721
Cdd:pfam15921 383 LADLHKREKELsleKEQNKrlwdrdtgnsiTIDHLRRELDDRNMEVQRLEALLKAMKSECQGQ---MERQMAAIQGK-NE 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 722 ETIKVRQLDSALEICKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQ-KELKIKNHSLQETSEQNVILQHTLQQQQQML 800
Cdd:pfam15921 459 SLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQeKERAIEATNAEITKLRSRVDLKLQELQHLKN 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 801 QQETIRNGELEDTQTKLE-----KQVSKLEQEL--------QKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTA 867
Cdd:pfam15921 539 EGDHLRNVQTECEALKLQmaekdKVIEILRQQIenmtqlvgQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDA 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 868 RQVKIEmdqykEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNavkELEKLQHSTETELTEALQKREVL 947
Cdd:pfam15921 619 KIRELE-----ARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRN---ELNSLSEDYEVLKRNFRNKSEEM 690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 948 ETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWE---LKQR 1024
Cdd:pfam15921 691 ETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEkhfLKEE 770
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034558170 1025 AAQVTHLDMTIREHRGEM--------------EQKIIKLEGTLEKSELELKECNKQI-----ESLNDKLQN 1076
Cdd:pfam15921 771 KNKLSQELSTVATEKNKMagelevlrsqerrlKEKVANMEVALDKASLQFAECQDIIqrqeqESVRLKLQH 841
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1084-1330 |
9.52e-08 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 56.95 E-value: 9.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1084 KEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIAtQYKEA---IDLGQELRLTREQVQNSHTELAEARHQQVQ 1160
Cdd:COG3206 159 EAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALE-EFRQKnglVDLSEEAKLLLQQLSELESQLAEARAELAE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1161 AQREIERLSSELEDMKQLSKE--KDAHGNHLAEELGASKVREAHLEARMQAE---IKKLSAEVESLKEAYHMEMishQEN 1235
Cdd:COG3206 238 AEARLAALRAQLGSGPDALPEllQSPVIQQLRAQLAELEAELAELSARYTPNhpdVIALRAQIAALRAQLQQEA---QRI 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1236 HAKWKISADSQKSSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRnEVIEAANEALLTKeseltRLQAKISGHEKAEDI 1315
Cdd:COG3206 315 LASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREV-EVARELYESLLQR-----LEEARLAEALTVGNV 388
|
250
....*....|....*
gi 1034558170 1316 KFLPAPFTSPTEIMP 1330
Cdd:COG3206 389 RVIDPAVVPLKPVSP 403
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
725-1301 |
1.23e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 56.52 E-value: 1.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 725 KVRQLDSALEICKEELVLHLNQLEGNKEKFEKQLKKKSEEvycLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQET 804
Cdd:TIGR00618 195 KAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREA---LQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 805 IRN--GELEDTQTKLEKQVSK---------LEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQkviELTGTARQVKIE 873
Cdd:TIGR00618 272 LRAqeAVLEETQERINRARKAaplaahikaVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQ---QSSIEEQRRLLQ 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 874 MDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAV-KELEKLQHSTETELTEaLQKREVLETELQ 952
Cdd:TIGR00618 349 TLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLcKELDILQREQATIDTR-TSAFRDLQGQLA 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 953 NAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLD 1032
Cdd:TIGR00618 428 HAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLC 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1033 MTIREHRGEMEQKIIK--LEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMK 1110
Cdd:TIGR00618 508 GSCIHPNPARQDIDNPgpLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIP 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1111 EMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHgnhla 1190
Cdd:TIGR00618 588 NLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVRE----- 662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1191 eELGASKVREAHLEARMQAEIKKLSAEVESLkeAYHMEMISH-------QENHAK--------WKISADSQKSSVQQLNE 1255
Cdd:TIGR00618 663 -HALSIRVLPKELLASRQLALQKMQSEKEQL--TYWKEMLAQcqtllreLETHIEeydrefneIENASSSLGSDLAARED 739
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 1034558170 1256 QLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLTKESELTR 1301
Cdd:TIGR00618 740 ALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAA 785
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
147-680 |
1.23e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.48 E-value: 1.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 147 ELTQSRAKVSMLESAQQQaasvpiLEEQIINLEAEVSAQDKVLREAENKLEQSQKMVIEKEQSLQESKEECIKLKVDLLE 226
Cdd:COG1196 254 ELEELEAELAELEAELEE------LRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAE 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 227 QTKQGKRAERQRNEALYNAEELSKAFQQykkkVAEKLEKVQAEEEILERNLTNCEKENKRLQERCGLYKSELEILKEKLR 306
Cdd:COG1196 328 LEEELEELEEELEELEEELEEAEEELEE----AEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLE 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 307 QLKEENNNGKEKLRIMAVKNSEVMAQLTESRQSILKLESELENKDEILRDKFSLMNENRELKVRVAAQNERLDLCQQEIE 386
Cdd:COG1196 404 ELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELL 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 387 SSRVELRSLEKIISQLPLKRELFGFKSYLSKyqmssfsNKEDRCIGCCEANKLVISELRIKLAIKEAEIQKLHANLTANq 466
Cdd:COG1196 484 EELAEAAARLLLLLEAEADYEGFLEGVKAAL-------LLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVED- 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 467 lSQSLITCNDSQESSK--------LSSLETEPVKLGGHQVAESVKDQNQHTMNKQYEKERQRLVTGIEELRTKLIQIEAE 538
Cdd:COG1196 556 -DEVAAAAIEYLKAAKagratflpLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEA 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 539 NSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKIRS 618
Cdd:COG1196 635 ALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEE 714
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1034558170 619 LETNINTEHEKICLAFEKAKKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDI 680
Cdd:COG1196 715 ERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
110-394 |
1.44e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.60 E-value: 1.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 110 DQEIKSLREKLNKLRQQNACLVTQNHSLMTKFESIHFELTQSRAKVSMLESAQ-QQAASVPILEEQIINLEAEVSAQDKV 188
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQIsALRKDLARLEAEVEQLEERIAQLSKE 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 189 LREAENKLEQSQKMVIEKEQSLQESKEEciklkvdLLEQTKQGKRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKVQA 268
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEAE-------IEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLES 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 269 eeeiLERNLTNCEKENKRLQERCGLYKSELEILKEKLRQLKEEnnngKEKLRIMAVKNSEVMAQLTESRQSilkLESELE 348
Cdd:TIGR02168 829 ----LERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEEL----IEELESELEALLNERASLEEALAL---LRSELE 897
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1034558170 349 NKDEILRDKFSLMNENRELKVRVAAQNERLDLCQQEIESSRVELRS 394
Cdd:TIGR02168 898 ELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
147-402 |
1.61e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.10 E-value: 1.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 147 ELTQSRAKVSMLESAQQQAASvpiLEEQIINLEAEVSAQDKVLREAENKLEQSQKMVIEKEQSLQESKEECIKLKVDLLE 226
Cdd:COG1196 223 KELEAELLLLKLRELEAELEE---LEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 227 QTKQGKRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKVQAEEEILERNLTNCEKENKRLQERCGLYKSELEILKEKLR 306
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 307 QLKEENNNGKEKLRIMAVKNSEVMAQLTESRQSILKLESELENKDEILRDKFSLMNENRELKVRVAAQNERLDLCQQEIE 386
Cdd:COG1196 380 ELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE 459
|
250
....*....|....*.
gi 1034558170 387 SSRVELRSLEKIISQL 402
Cdd:COG1196 460 ALLELLAELLEEAALL 475
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1043-1224 |
2.58e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.77 E-value: 2.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1043 EQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQY 1122
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1123 IATQYKEAIDLGQ----ELRLTREQVQNS------HTELAEARHQQVQAQR----EIERLSSELEDMKQLSKEKDAHGNH 1188
Cdd:COG4942 106 LAELLRALYRLGRqpplALLLSPEDFLDAvrrlqyLKYLAPARREQAEELRadlaELAALRAELEAERAELEALLAELEE 185
|
170 180 190
....*....|....*....|....*....|....*.
gi 1034558170 1189 LAEELGASKVREAHLEARMQAEIKKLSAEVESLKEA 1224
Cdd:COG4942 186 ERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
948-1155 |
2.73e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 54.84 E-value: 2.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 948 ETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAA- 1026
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARa 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1027 ------QVTHLDM------------------TIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLR 1082
Cdd:COG3883 95 lyrsggSVSYLDVllgsesfsdfldrlsalsKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELE 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1034558170 1083 EKefiMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEAR 1155
Cdd:COG3883 175 AQ---QAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 244
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
906-1314 |
2.86e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.31 E-value: 2.86e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 906 DMILDQTKTElEKKTNAVKELEKLqHSTETELTEALQKREVLE--TELQNAHGELKSTLRQLQELRDVL-----QKAQLS 978
Cdd:COG4913 215 EYMLEEPDTF-EAADALVEHFDDL-ERAHEALEDAREQIELLEpiRELAERYAAARERLAELEYLRAALrlwfaQRRLEL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 979 LEEKYTT----IKDLTAELRECKMEIEDKKQELLEMDQALKERNW----ELKQRAAQVTHLDMTIREHRGEMEQKIIKLE 1050
Cdd:COG4913 293 LEAELEElraeLARLEAELERLEARLDALREELDELEAQIRGNGGdrleQLEREIERLERELEERERRRARLEALLAALG 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1051 GTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFimlQNEQEISQLKKEIERTQQRMKEMES---------------- 1114
Cdd:COG4913 373 LPLPASAEEFAALRAEAAALLEALEEELEALEEALA---EAEAALRDLRRELRELEAEIASLERrksniparllalrdal 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1115 -------------------VMKEQ-------EQYI----------------ATQYKEAIDLGQELRLTREQVQNSHTELA 1152
Cdd:COG4913 450 aealgldeaelpfvgelieVRPEEerwrgaiERVLggfaltllvppehyaaALRWVNRLHLRGRLVYERVRTGLPDPERP 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1153 EARHQQVQAQREIER------LSSEL---------EDMKQLSKEKDA-------HGNHLAEE------------LGAS-K 1197
Cdd:COG4913 530 RLDPDSLAGKLDFKPhpfrawLEAELgrrfdyvcvDSPEELRRHPRAitragqvKGNGTRHEkddrrrirsryvLGFDnR 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1198 VREAHLEARM---QAEIKKLSAEVESLKEAYHmEMISHQENHAKWK------ISADSQKSSVQQLNEQLEkaklELEEAQ 1268
Cdd:COG4913 610 AKLAALEAELaelEEELAEAEERLEALEAELD-ALQERREALQRLAeyswdeIDVASAEREIAELEAELE----RLDASS 684
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 1034558170 1269 DTVSNLHQQVQDRNEVIEAANEALLTKESELTRLQAKISGHEKAED 1314
Cdd:COG4913 685 DDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELD 730
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
505-1154 |
3.43e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 55.36 E-value: 3.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 505 QNQHTMNKQYEKERQRLVTGIEELRTKLIqiEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTL 584
Cdd:TIGR00618 242 HAYLTQKREAQEEQLKKQQLLKQLRARIE--ELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSK 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 585 EKQLEEKIVAYSSIAAKNAELEQElmeknekiRSLETNINTEHEKICLAFEKAKKI--HLEQHKEMEKQIERLEAQLEKK 662
Cdd:TIGR00618 320 MRSRAKLLMKRAAHVKQQSSIEEQ--------RRLLQTLHSQEIHIRDAHEVATSIreISCQQHTLTQHIHTLQQQKTTL 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 663 DQQFKEQEKTMSMLQ--QDIICKQHHLESLDRL-LTESKGEMKKENMKKDEALKALQNQVSEETIKVRQLDSALEICKEE 739
Cdd:TIGR00618 392 TQKLQSLCKELDILQreQATIDTRTSAFRDLQGqLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKER 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 740 LvlhlnQLEGNKEKFEKQLKKKSEEVYCLQKELKiknhSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEK 819
Cdd:TIGR00618 472 E-----QQLQTKEQIHLQETRKKAVVLARLLELQ----EEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLET 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 820 QVSKLEQELQKQRESSAEKLRKMEEKCESAAHEAdLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENK- 898
Cdd:TIGR00618 543 SEEDVYHQLTSERKQRASLKEQMQEIQQSFSILT-QCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKl 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 899 --AMHLSQLDMILDQTKTELEKKTNAVK--ELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQK 974
Cdd:TIGR00618 622 qpEQDLQDVRLHLQQCSQELALKLTALHalQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQ 701
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 975 AQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLE 1054
Cdd:TIGR00618 702 CQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELS 781
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1055 KSELELKECNKQIESLNDKLQNAKEQLREK-EFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEqeqyIATQYKEAIDL 1133
Cdd:TIGR00618 782 HLAAEIQFFNRLREEDTHLLKTLEAEIGQEiPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGE----ITHQLLKYEEC 857
|
650 660
....*....|....*....|.
gi 1034558170 1134 GQELRLTREQVQNSHTELAEA 1154
Cdd:TIGR00618 858 SKQLAQLTQEQAKIIQLSDKL 878
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
960-1168 |
3.44e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.31 E-value: 3.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 960 STLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECkmeiedkkQELLEMDQALKERNWELKQRAAqvthLDMTIREHR 1039
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEALEAELDAL--------QERREALQRLAEYSWDEIDVAS----AEREIAELE 674
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1040 GEMEQkiiklegtLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQ 1119
Cdd:COG4913 675 AELER--------LDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLE 746
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1034558170 1120 EQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHqqvQAQREIERL 1168
Cdd:COG4913 747 LRALLEERFAAALGDAVERELRENLEERIDALRARLN---RAEEELERA 792
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
505-1268 |
3.46e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 55.44 E-value: 3.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 505 QNQHTMNKQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEmtkkcSQLLTL 584
Cdd:TIGR00606 308 HNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATR-----LELDGF 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 585 EKQleekivAYSSIAAKNA-ELEQELMEknEKIRSLETNINTEHEKICLAFEKAKKIHLEQhKEMEKQIERLEAQLEKKD 663
Cdd:TIGR00606 383 ERG------PFSERQIKNFhTLVIERQE--DEAKTAAQLCADLQSKERLKQEQADEIRDEK-KGLGRTIELKKEILEKKQ 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 664 QQFKEQEKTMSMLQ---QDIICKQHHLESLDRLLTESKGEMKKENMKKDEalKALQNQVSEETIKVRQLDSALEickeel 740
Cdd:TIGR00606 454 EELKFVIKELQQLEgssDRILELDQELRKAERELSKAEKNSLTETLKKEV--KSLQNEKADLDRKLRKLDQEME------ 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 741 vlhlnQLEGNKEKFEKQLKKKSEEVYCLQKELKIK-NHSLQETSEQNVILQHTLQQQQQMLQQETIRngELEDTQTKLEK 819
Cdd:TIGR00606 526 -----QLNHHTTTRTQMEMLTKDKMDKDEQIRKIKsRHSDELTSLLGYFPNKKQLEDWLHSKSKEIN--QTRDRLAKLNK 598
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 820 QVSKLEQ---ELQKQRESSAEKLRKMEEK----CESAAHEADLKRQKViELTGTARQVKI------EMDQYKEELSKMEK 886
Cdd:TIGR00606 599 ELASLEQnknHINNELESKEEQLSSYEDKlfdvCGSQDEESDLERLKE-EIEKSSKQRAMlagataVYSQFITQLTDENQ 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 887 EIMHL-KRDGENKAmhlsQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQL 965
Cdd:TIGR00606 678 SCCPVcQRVFQTEA----ELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKL 753
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 966 QELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKK-QELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQ 1044
Cdd:TIGR00606 754 QKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTiMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQE 833
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1045 KIIKLEGTLEKSELELK---ECNKQIESLNDKL-----------------QNAKEQLREKEFIMLQNEQEISQLKKEIER 1104
Cdd:TIGR00606 834 KQHELDTVVSKIELNRKliqDQQEQIQHLKSKTnelkseklqigtnlqrrQQFEEQLVELSTEVQSLIREIKDAKEQDSP 913
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1105 TQQRMKEMesvMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAE--------ARHQQVQAQREIERLSSELEDMK 1176
Cdd:TIGR00606 914 LETFLEKD---QQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDienkiqdgKDDYLKQKETELNTVNAQLEECE 990
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1177 QLSKEKDAHGNHLAEELGASKVREAHLEARM-----QAEIKKLSAEVES-LKEAYHMEMISHQENHAKWKISADSQKSS- 1249
Cdd:TIGR00606 991 KHQEKINEDMRLMRQDIDTQKIQERWLQDNLtlrkrENELKEVEEELKQhLKEMGQMQVLQMKQEHQKLEENIDLIKRNh 1070
|
810 820
....*....|....*....|....*
gi 1034558170 1250 ------VQQLNEQLEKAKLELEEAQ 1268
Cdd:TIGR00606 1071 vlalgrQKGYEKEIKHFKKELREPQ 1095
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
814-1225 |
4.13e-07 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 54.75 E-value: 4.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 814 QTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKR 893
Cdd:pfam05557 4 LIESKARLSQLQNEKKQMELEHKRARIELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNRLKKK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 894 DGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREvletELQNAHGELKSTLRQLQELRDVLQ 973
Cdd:pfam05557 84 YLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELE----ELQERLDLLKAKASEAEQLRQNLE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 974 KAQLSLEEKYTTIKDLTAELR---ECKMEIEDKKQELLEMDQALKernwELKQRAAQVTHLDMTIR-------------- 1036
Cdd:pfam05557 160 KQQSSLAEAEQRIKELEFEIQsqeQDSEIVKNSKSELARIPELEK----ELERLREHNKHLNENIEnklllkeevedlkr 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1037 --EHRGEMEQKIIKLEGTLEKSELELKECNK-----------------QIESLNDKLQNAKEQLREKEFIMLQNEQEISQ 1097
Cdd:pfam05557 236 klEREEKYREEAATLELEKEKLEQELQSWVKlaqdtglnlrspedlsrRIEQLQQREIVLKEENSSLTSSARQLEKARRE 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1098 LKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQReIERLSSELEDMKQ 1177
Cdd:pfam05557 316 LEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILESYDKELTMSNYSPQLLER-IEEAEDMTQKMQA 394
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 1034558170 1178 LSKEKDAHGNHLAEELGASKVREAHLEARMQAEIKKLS-AEVESLKEAY 1225
Cdd:pfam05557 395 HNEEMEAQLSVAEEELGGYKQQAQTLERELQALRQQESlADPSYSKEEV 443
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
954-1174 |
4.77e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.00 E-value: 4.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 954 AHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDM 1033
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1034 TIREHRGEMEQKIIKLEGTLEKSELEL---KECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMK 1110
Cdd:COG4942 98 ELEAQKEELAELLRALYRLGRQPPLALllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1034558170 1111 EMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNshtELAEARHQQVQAQREIERLSSELED 1174
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAA---ELAELQQEAEELEALIARLEAEAAA 238
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
804-1281 |
5.39e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.54 E-value: 5.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 804 TIRNGELEDTQTKLEKQVSKLEQELQKQR-ESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVK-IEMDQYKEEL 881
Cdd:COG4913 268 RERLAELEYLRAALRLWFAQRRLELLEAElEELRAELARLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLEREI 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 882 SKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEkktNAVKELEKLQHSTETELTEALQKRevleTELQNAHGELKST 961
Cdd:COG4913 348 ERLERELEERERRRARLEALLAALGLPLPASAEEFA---ALRAEAAALLEALEEELEALEEAL----AEAEAALRDLRRE 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 962 LRQLQELRDVLQKAQLSLEEKYTTIKDLTAElrECKMEIEDKK--QELLEMDQalKERNWEL----------------KQ 1023
Cdd:COG4913 421 LRELEAEIASLERRKSNIPARLLALRDALAE--ALGLDEAELPfvGELIEVRP--EEERWRGaiervlggfaltllvpPE 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1024 RAAQV------THLDMTIREHRGEMEQKIIKLEGTLEKS---ELELKEcNKQIESLNDKLQ------------------- 1075
Cdd:COG4913 497 HYAAAlrwvnrLHLRGRLVYERVRTGLPDPERPRLDPDSlagKLDFKP-HPFRAWLEAELGrrfdyvcvdspeelrrhpr 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1076 -----------------NAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELR 1138
Cdd:COG4913 576 aitragqvkgngtrhekDDRRRIRSRYVLGFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAE 655
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1139 LTREQVqnshtELAEARHQQVQAQREIERL---SSELEDMKQLSKEKDAHGNHLAEELGASKVREAHLE---ARMQAEIK 1212
Cdd:COG4913 656 YSWDEI-----DVASAEREIAELEAELERLdasSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEkelEQAEEELD 730
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034558170 1213 KLSAEVESLKEAYHMEMISHQENHAKWKISADSQKSSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDR 1281
Cdd:COG4913 731 ELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
534-1217 |
6.49e-07 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 54.34 E-value: 6.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 534 QIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKcSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKN 613
Cdd:pfam05483 100 ELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQEN-KDLIKENNATRHLCNLLKETCARSAEKTKKYEYER 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 614 EKIRSLETNINTEHEKICLAFE----KAKKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLES 689
Cdd:pfam05483 179 EETRQVYMDLNNNIEKMILAFEelrvQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKD 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 690 LDRLLTESKGEMKKenmkKDEALKALQNQVSEETIKVRQLDSALEickeELVLHLNQLEGNKEKFEKQLKKKSEEVYCL- 768
Cdd:pfam05483 259 LTFLLEESRDKANQ----LEEKTKLQDENLKELIEKKDHLTKELE----DIKMSLQRSMSTQKALEEDLQIATKTICQLt 330
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 769 -QKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRN------GELEDTQTKLEKQVSKLEQ--ELQKQRESSAEKL 839
Cdd:pfam05483 331 eEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQrlekneDQLKIITMELQKKSSELEEmtKFKNNKEVELEEL 410
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 840 RKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLdmildqtKTELEKK 919
Cdd:pfam05483 411 KKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDL-------KTELEKE 483
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 920 TNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQkaqlSLEEKYTTIKDltaelreckmE 999
Cdd:pfam05483 484 KLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIE----NLEEKEMNLRD----------E 549
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1000 IEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKE 1079
Cdd:pfam05483 550 LESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENK 629
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1080 QLREKEFIMLQNEQEISQLKKEIER-TQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAE----A 1154
Cdd:pfam05483 630 QLNAYEIKVNKLELELASAKQKFEEiIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEmvalM 709
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1034558170 1155 RHQQVQAQREIERLSSELEDMKqlSKEKDAHGNHLAEELGASKVREAHLEARMQAEIKKLSAE 1217
Cdd:pfam05483 710 EKHKHQYDKIIEERDSELGLYK--NKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKE 770
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
111-1002 |
6.97e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 54.35 E-value: 6.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 111 QEIKSLREKLNKLRQ----QNACLVTQNHSLMTKFESIHFEltqsraKVSMLESAQQQAASVPILEEQIIN----LEAEV 182
Cdd:pfam15921 85 HQVKDLQRRLNESNElhekQKFYLRQSVIDLQTKLQEMQME------RDAMADIRRRESQSQEDLRNQLQNtvheLEAAK 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 183 SAQDKVLREAENKLEQSQKMVIEKEQSLQESKeeciKLKVDLLEQTkqGKRAERQRNEALYNAEELSKAFQQYKKKVAEK 262
Cdd:pfam15921 159 CLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIR----SILVDFEEAS--GKKIYEHDSMSTMHFRSLGSAISKILRELDTE 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 263 LEKVQAEEEILERNLTNCEKENK------------RLQERCGLYKSELEILKEKLRQLKEENNNGKEKLRIMAV----KN 326
Cdd:pfam15921 233 ISYLKGRIFPVEDQLEALKSESQnkielllqqhqdRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEqarnQN 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 327 SEVMAQLTESRQSILKLESELENKDEILRDKFslmnenRELKVRVAAQNERLDLCQQEIESSRVELRSLEKIISQLplkr 406
Cdd:pfam15921 313 SMYMRQLSDLESTVSQLRSELREAKRMYEDKI------EELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKL---- 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 407 eLFGFKSYLSKYQMSSFSNKE--DRCIGcceaNKLVISELRIKLAIKEAEIQKLHAnltanqLSQSLITCNDSQESSKLS 484
Cdd:pfam15921 383 -LADLHKREKELSLEKEQNKRlwDRDTG----NSITIDHLRRELDDRNMEVQRLEA------LLKAMKSECQGQMERQMA 451
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 485 SLEtepvklGGHQVAESVKdqnqhTMNKQYEKERQRLVTGIEELRTKLIQIEAEN---SDLKVNMAHRTSQFQLIQEELl 561
Cdd:pfam15921 452 AIQ------GKNESLEKVS-----SLTAQLESTKEMLRKVVEELTAKKMTLESSErtvSDLTASLQEKERAIEATNAEI- 519
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 562 ekasnsSKLESEMTKKCSQLLTLEKQLEEkivaYSSIAAKNAELEQELMEKNEKIRSLETNINTEHEKIclafekakkih 641
Cdd:pfam15921 520 ------TKLRSRVDLKLQELQHLKNEGDH----LRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLV----------- 578
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 642 lEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDiicKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSE 721
Cdd:pfam15921 579 -GQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDK---KDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQE 654
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 722 ETikvrQLDSALEICKEElvlhLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNvilqhtlqqqqqmlq 801
Cdd:pfam15921 655 RD----QLLNEVKTSRNE----LNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQT--------------- 711
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 802 QETIRNGELEDTQT-KLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEE 880
Cdd:pfam15921 712 RNTLKSMEGSDGHAmKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGE 791
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 881 LSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELeKLQHSTETELTE--------ALQKREVLETELQ 952
Cdd:pfam15921 792 LEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRL-KLQHTLDVKELQgpgytsnsSMKPRLLQPASFT 870
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|
gi 1034558170 953 NAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIED 1002
Cdd:pfam15921 871 RTHSNVPSSQSTASFLSHHSRKTNALKEDPTRDLKQLLQELRSVINEEPT 920
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
809-1028 |
8.95e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.84 E-value: 8.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 809 ELEDTQTKLEKQVSKLEQeLQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEI 888
Cdd:COG4942 28 ELEQLQQEIAELEKELAA-LKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 889 MHLKRDGEnKAMHLSQLDMILDQTK-TELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQE 967
Cdd:COG4942 107 AELLRALY-RLGRQPPLALLLSPEDfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEE 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034558170 968 LRDVLQKAQlslEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQV 1028
Cdd:COG4942 186 ERAALEALK---AERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
879-1266 |
1.19e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.53 E-value: 1.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 879 EELSKMEKEIMHLKrDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGEL 958
Cdd:PRK03918 145 ESREKVVRQILGLD-DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREEL 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 959 ---KSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNwELKQRAAQVthldMTI 1035
Cdd:PRK03918 224 eklEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEY----IKL 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1036 REHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEfimlqneqeisQLKKEIERTQQRMKEMESV 1115
Cdd:PRK03918 299 SEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLK-----------ELEKRLEELEERHELYEEA 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1116 MKEQEQyiATQYKEaidlgqelRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLAEELGA 1195
Cdd:PRK03918 368 KAKKEE--LERLKK--------RLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGK 437
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034558170 1196 SKV--------REAHLEARMQAEIKKLSAEVESLKEAyhMEMISHQENHAKWKISADSQKSSVQQLNEQLEKAKLELEE 1266
Cdd:PRK03918 438 CPVcgrelteeHRKELLEEYTAELKRIEKELKEIEEK--ERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKK 514
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
512-1123 |
1.23e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 53.10 E-value: 1.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 512 KQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEK 591
Cdd:TIGR04523 134 KENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKN 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 592 ---IVAYSSIAAKNAELEQELMEKNEKIRSLETNINTEHEKICLAFEKAKKIhLEQHKEMEKQIERLEAQLEKKDQQFKE 668
Cdd:TIGR04523 214 kslESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKI-KKQLSEKQKELEQNNKKIKELEKQLNQ 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 669 QEKTMSMLQQDiicKQHHLESldrllteskgEMKKENMKKDEALKALQNQVSEETIKVRQLDSALEICKEELvlhlNQLE 748
Cdd:TIGR04523 293 LKSEISDLNNQ---KEQDWNK----------ELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKEL----TNSE 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 749 GNKEKFEKQLKKKSEEVYCLQKElkiknhslqetseqnvilqhtlqqqqqmlqqetirNGELEDTQTKLEKQVSKLEQEL 828
Cdd:TIGR04523 356 SENSEKQRELEEKQNEIEKLKKE-----------------------------------NQSYKQEIKNLESQINDLESKI 400
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 829 QKQRESSAEKlrkmEEKCESAAHEADLKRQkvieltgtarqvkiEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMI 908
Cdd:TIGR04523 401 QNQEKLNQQK----DEQIKKLQQEKELLEK--------------EIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNT 462
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 909 LDQTKTELEKKTNAVKELEKLQHSTETELTEALQKrevletelqnaHGELKSTLRQLQELRDVLQKAQLSLEEKyttIKD 988
Cdd:TIGR04523 463 RESLETQLKVLSRSINKIKQNLEQKQKELKSKEKE-----------LKKLNEEKKELEEKVKDLTKKISSLKEK---IEK 528
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 989 LTAELRECKMEIEDKKQELLEMDQALKERNWElkqraaqvthldmtirEHRGEMEQKIIKLEGTLEKSELELKECNKQIE 1068
Cdd:TIGR04523 529 LESEKKEKESKISDLEDELNKDDFELKKENLE----------------KEIDEKNKEIEELKQTQKSLKKKQEEKQELID 592
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 1034558170 1069 SLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYI 1123
Cdd:TIGR04523 593 QKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEV 647
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
190-830 |
1.37e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.02 E-value: 1.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 190 REAENKLEQSQkmviEKEQSLQeskeeciklkvDLL-EQTKQGKRAERQRNEALyNAEELSKAFQQYKKKV-AEKLEKVQ 267
Cdd:COG1196 175 EEAERKLEATE----ENLERLE-----------DILgELERQLEPLERQAEKAE-RYRELKEELKELEAELlLLKLRELE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 268 AEEEILERNLTNCEKENKRLQERCGLYKSELEILKEKLRQLKEENNNGKEKLRimavknsEVMAQLTESRQSIlklESEL 347
Cdd:COG1196 239 AELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEY-------ELLAELARLEQDI---ARLE 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 348 ENKDEILRDKFSLMNENRELKVRVAAQNERLDLCQQEIESSRVELRSLEKIISQLPLKRELfgfksylskyQMSSFSNKE 427
Cdd:COG1196 309 ERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLE----------AEAELAEAE 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 428 DrcigccEANKLVISELRIKLAIKEAEIQKLHANLTANQLSQSLITCNDSQESSKLSSLETEPVKLGGHQVAESVKDQNQ 507
Cdd:COG1196 379 E------ELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 508 htmnkQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLE--------KASNSSKLESEMTKKCS 579
Cdd:COG1196 453 -----ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADyegflegvKAALLLAGLRGLAGAVA 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 580 QLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKnEKIRSLETNINTEHEKICLAFEKAKKIHLEQHKEMEKQ-----IER 654
Cdd:COG1196 528 VLIGVEAAYEAALEAALAAALQNIVVEDDEVAA-AAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGaavdlVAS 606
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 655 LEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSEETIKVRQLDSAle 734
Cdd:COG1196 607 DLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEEL-- 684
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 735 icKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQ 814
Cdd:COG1196 685 --AERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDL 762
|
650
....*....|....*.
gi 1034558170 815 TKLEKQVSKLEQELQK 830
Cdd:COG1196 763 EELERELERLEREIEA 778
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1048-1212 |
1.39e-06 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 52.86 E-value: 1.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1048 KLEGTLEKSELELKECNKQIESLN-DKLQNAKEQLREKEfimLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQ 1126
Cdd:PRK12704 32 KIKEAEEEAKRILEEAKKEAEAIKkEALLEAKEEIHKLR---NEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKR 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1127 YKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSE------LEDMKQLSKEkDAhgnhlaeelgASKVRE 1200
Cdd:PRK12704 109 EEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEeakeilLEKVEEEARH-EA----------AVLIKE 177
|
170
....*....|..
gi 1034558170 1201 AHLEARMQAEIK 1212
Cdd:PRK12704 178 IEEEAKEEADKK 189
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
755-1298 |
1.43e-06 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 52.90 E-value: 1.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 755 EKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTlqqqqqmlqqetirngELEDTQ-TKLEKQVSKLEQELQKQRE 833
Cdd:pfam10174 198 EVLLDQKEKENIHLREELHRRNQLQPDPAKTKALQTVI----------------EMKDTKiSSLERNIRDLEDEVQMLKT 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 834 SSaekLRKMEEkcesaaHEADLKRQKVIEltGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTK 913
Cdd:pfam10174 262 NG---LLHTED------REEEIKQMEVYK--SHSKFMKNKIDQLKQELSKKESELLALQTKLETLTNQNSDCKQHIEVLK 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 914 TELEKKTNAVKELEKLQHSTETELTEA---LQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKyttIKDLT 990
Cdd:pfam10174 331 ESLTAKEQRAAILQTEVDALRLRLEEKesfLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKK---IENLQ 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 991 AELReckmeieDKKQELLEmdqaLKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEgtlEKSELELKECNKQIESL 1070
Cdd:pfam10174 408 EQLR-------DKDKQLAG----LKERVKSLQTDSSNTDTALTTLEEALSEKERIIERLK---EQREREDRERLEELESL 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1071 NDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTRE-------- 1142
Cdd:pfam10174 474 KKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAHNaeeavrtn 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1143 -----QVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLaeelgASKVREAHLEARMQAEIKKLSAE 1217
Cdd:pfam10174 554 peindRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAEL-----ESLTLRQMKEQNKKVANIKHGQQ 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1218 VESLKEAYHMEMISHQENHAKwkisADSQKSSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRN--------------- 1282
Cdd:pfam10174 629 EMKKKGAQLLEEARRREDNLA----DNSQQLQLEELMGALEKTRQELDATKARLSSTQQSLAEKDghltnlraerrkqle 704
|
570
....*....|....*.
gi 1034558170 1283 EVIEAANEALLTKESE 1298
Cdd:pfam10174 705 EILEMKQEALLAAISE 720
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
593-1226 |
1.57e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 52.72 E-value: 1.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 593 VAYSSIAAKNAELEQELMEkneKIRSLETNINTEhEKICLAFEKAKKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEKT 672
Cdd:TIGR04523 22 VGYKNIANKQDTEEKQLEK---KLKTIKNELKNK-EKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDK 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 673 MSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEAlKALQNQVSEETIKVRQLDSALEICKEELVLHLNQLEGNKE 752
Cdd:TIGR04523 98 INKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKEN-KKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELN 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 753 KFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLeQELQKQR 832
Cdd:TIGR04523 177 LLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEI-SNTQTQL 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 833 ESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEE-----LSKMEKEIMHLKRDGENKAMHLSQLDM 907
Cdd:TIGR04523 256 NQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQkeqdwNKELKSELKNQEKKLEEIQNQISQNNK 335
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 908 ILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIK 987
Cdd:TIGR04523 336 IISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIK 415
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 988 DLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTirehRGEMEQKIIKLEGTLEKSELELKECNKQI 1067
Cdd:TIGR04523 416 KLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNT----RESLETQLKVLSRSINKIKQNLEQKQKEL 491
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1068 ESLNDKLQNAKEQLRekefimlQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQElrLTREQVQNS 1147
Cdd:TIGR04523 492 KSKEKELKKLNEEKK-------ELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFE--LKKENLEKE 562
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1148 HTELAEARHQQVQAQREIERLSSEL-EDMKQLSKEKDAHGNHLAEELGASKVREAHLEaRMQAEIKKLSAEVESLKEAYH 1226
Cdd:TIGR04523 563 IDEKNKEIEELKQTQKSLKKKQEEKqELIDQKEKEKKDLIKEIEEKEKKISSLEKELE-KAKKENEKLSSIIKNIKSKKN 641
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
873-1085 |
1.66e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.07 E-value: 1.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 873 EMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQ 952
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 953 NAHGELKSTLRQLQELRD-------VLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRA 1025
Cdd:COG4942 101 AQKEELAELLRALYRLGRqpplallLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALL 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1026 AQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKE 1085
Cdd:COG4942 181 AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
514-995 |
1.91e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 52.73 E-value: 1.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 514 YEKERQRLVT---GIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTkkcsqllTLEKQLEE 590
Cdd:PRK02224 246 HEERREELETleaEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAE-------AVEARREE 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 591 kivayssIAAKNAELEQELMEKNEKIRSLETNINTEHEKICLAFEKAKKIHlEQHKEMEKQIERLEAQLEKKDQQFKEQE 670
Cdd:PRK02224 319 -------LEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELR-EEAAELESELEEAREAVEDRREEIEELE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 671 KTMSMLQQ---DIICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSEEtikvRQLDSA-------LEICKEEL 740
Cdd:PRK02224 391 EEIEELRErfgDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEA----EALLEAgkcpecgQPVEGSPH 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 741 VLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKiKNHSLQETSEQnvILQHTLQQQQQMLQQETIRNG--ELEDTQTKLE 818
Cdd:PRK02224 467 VETIEEDRERVEELEAELEDLEEEVEEVEERLE-RAEDLVEAEDR--IERLEERREDLEELIAERRETieEKRERAEELR 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 819 KQVSKLEQELQKQRESSAEklrkmeekcesAAHEADLKRQKVIELTGTARQVKIEMDQYkEELSKMEKEIMHLKRDGENK 898
Cdd:PRK02224 544 ERAAELEAEAEEKREAAAE-----------AEEEAEEAREEVAELNSKLAELKERIESL-ERIRTLLAAIADAEDEIERL 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 899 AMHLSQLDMILDQTKTELEKKTNAVKEL---------EKLQHSTET------ELTEALQKREVLETELQNAHGELKSTLR 963
Cdd:PRK02224 612 REKREALAELNDERRERLAEKRERKRELeaefdeariEEAREDKERaeeyleQVEEKLDELREERDDLQAEIGAVENELE 691
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 1034558170 964 QLQELRD---VLQKAQLSLEEKY-------TTIKDLTAELRE 995
Cdd:PRK02224 692 ELEELRErreALENRVEALEALYdeaeeleSMYGDLRAELRQ 733
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
114-923 |
1.94e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 52.67 E-value: 1.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 114 KSLREKLNKLRQQNACLVTQNHSLMTKFESIHfELTQSRAKVSMLESAQQQAAsvpilEEQIINLEAEVSAQDKVLREAE 193
Cdd:pfam02463 250 QEEIESSKQEIEKEEEKLAQVLKENKEEEKEK-KLQEEELKLLAKEEEELKSE-----LLKLERRKVDDEEKLKESEKEK 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 194 NKLEQSQKMVIEKEQSLQESKEECIKLKVDLLEQTKQGKRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKVQAEEEIL 273
Cdd:pfam02463 324 KKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEE 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 274 ERNLtncekenkrlqercglyKSELEILKEKLRQLKEENNNGKEKLRIMAVKNSEVMAQLTESRQSILKLESELENKDEI 353
Cdd:pfam02463 404 EKEA-----------------QLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELE 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 354 LRDKFSLMNENRELKVRVAAQNERLDLCQQEIESSRVELRSLEKII---SQLPLKRELFGFKSYLSKYQMSSFSNKEDRC 430
Cdd:pfam02463 467 LKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLlalIKDGVGGRIISAHGRLGDLGVAVENYKVAIS 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 431 IGCCEANKLVISELRIKLAIKEAEIQKLHANLTANQLSQSLITCNDSQESSKLSSLETEPVKLGGHQVAESVKDQNQHTM 510
Cdd:pfam02463 547 TAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVE 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 511 NKQYEKERQRLVTGIEELRTKLIQIEaENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEE 590
Cdd:pfam02463 627 GILKDTELTKLKESAKAKESGLRKGV-SLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKE 705
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 591 KIVAYSSIAAKNAELEQELMEKNEKIRSLETNINTEHEKICLAFEKAKKIhleQHKEMEKQIERLEAQLEKKDQQFKEQE 670
Cdd:pfam02463 706 QREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKS---RLKKEEKEEEKSELSLKEKELAEEREK 782
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 671 KTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSEETIKVRQLDSALEICKEELVLHLNQLEGN 750
Cdd:pfam02463 783 TEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEE 862
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 751 KEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQK 830
Cdd:pfam02463 863 ITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLL 942
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 831 QRESSAEklrKMEEKCESAAHEADLKRQKVIELTgtaRQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILD 910
Cdd:pfam02463 943 EEADEKE---KEENNKEEEEERNKRLLLAKEELG---KVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETC 1016
|
810
....*....|...
gi 1034558170 911 QTKTELEKKTNAV 923
Cdd:pfam02463 1017 QRLKEFLELFVSI 1029
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1036-1312 |
2.77e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.37 E-value: 2.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1036 REHRGEMEQKIIKLEGTLEKSELELKECNKQIESLN------DKLQNAKEQLREKEFIMLQNEqeISQLKKEIERTQQRM 1109
Cdd:TIGR02168 171 KERRKETERKLERTRENLDRLEDILNELERQLKSLErqaekaERYKELKAELRELELALLVLR--LEELREELEELQEEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1110 KEMESVMKEQEQYIATqykeaidLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLsselEDMKQLSKEKDAHGNHL 1189
Cdd:TIGR02168 249 KEAEEELEELTAELQE-------LEEKLEELRLEVSELEEEIEELQKELYALANEISRL----EQQKQILRERLANLERQ 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1190 AEELGASKVREAHLEARMQAEIKKLSAEVESLKEAYHMEMISHQENHAKWkisadsqkssvQQLNEQLEKAKLELEEAQD 1269
Cdd:TIGR02168 318 LEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL-----------EELESRLEELEEQLETLRS 386
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1034558170 1270 TVSNLHQQVQDRNEVIEAANEALLTKESELTRLQAKISGHEKA 1312
Cdd:TIGR02168 387 KVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKK 429
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1041-1224 |
3.01e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 51.37 E-value: 3.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1041 EMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQE 1120
Cdd:COG3883 20 AKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSG 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1121 -------------------------QYIATQYKEAID----LGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSE 1171
Cdd:COG3883 100 gsvsyldvllgsesfsdfldrlsalSKIADADADLLEelkaDKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAE 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1034558170 1172 LED-MKQLSKEKDAHGNHLAEELGASKVREAHLEARMQAEIKKLSAEVESLKEA 1224
Cdd:COG3883 180 QEAlLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAA 233
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
909-1121 |
3.01e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 3.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 909 LDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKD 988
Cdd:COG4942 29 LEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 989 LTAELreCKMEIEDKKQELL---------EMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELE 1059
Cdd:COG4942 109 LLRAL--YRLGRQPPLALLLspedfldavRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEE 186
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1034558170 1060 LKECNKQIESLNDKLQNAKEQLREKEfimlqneQEISQLKKEIERTQQRMKEMESVMKEQEQ 1121
Cdd:COG4942 187 RAALEALKAERQKLLARLEKELAELA-------AELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
936-1285 |
4.39e-06 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 51.05 E-value: 4.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 936 ELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALK 1015
Cdd:pfam07888 42 ERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1016 ERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLR------------- 1082
Cdd:pfam07888 122 AQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRslskefqelrnsl 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1083 -EKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKE----QEQYIATQYKEAIdLGQELRLTREQVQNSHTELAEARHQ 1157
Cdd:pfam07888 202 aQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEElrslQERLNASERKVEG-LGEELSSMAAQRDRTQAELHQARLQ 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1158 QVQAQREIERLSSEL-EDMKQLSKEKDAhgnhLAEELGASKVReahlearmqaeIKKLSAEVESLKEAYHMEMISHQENH 1236
Cdd:pfam07888 281 AAQLTLQLADASLALrEGRARWAQERET----LQQSAEADKDR-----------IEKLSAELQRLEERLQEERMEREKLE 345
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1034558170 1237 AKWKISADSQKSSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVI 1285
Cdd:pfam07888 346 VELGREKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQELLEYI 394
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
850-1208 |
4.46e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 51.49 E-value: 4.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 850 AHEADLKRQKVI----ELTGTARQVKIEMDQYKE---ELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTktelEKKTNA 922
Cdd:COG3096 277 ANERRELSERALelrrELFGARRQLAEEQYRLVEmarELEELSARESDLEQDYQAASDHLNLVQTALRQQ----EKIERY 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 923 VKELEKL------QHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQ-------KAQLSLEE--KYTTIK 987
Cdd:COG3096 353 QEDLEELterleeQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQtraiqyqQAVQALEKarALCGLP 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 988 DLTAElreckmEIEDKKQELLEMDQALKERNWELKQRAAQVthlDMTIREHRGEMeQKIIKLEGTLEKSelelkecnkqi 1067
Cdd:COG3096 433 DLTPE------NAEDYLAAFRAKEQQATEEVLELEQKLSVA---DAARRQFEKAY-ELVCKIAGEVERS----------- 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1068 eslnDKLQNAKEQLRE-KEFIML-QNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQ 1145
Cdd:COG3096 492 ----QAWQTARELLRRyRSQQALaQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLE 567
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034558170 1146 NSHTELAEARHQQVQAQREIERLSselEDMKQLSK------EKDAHGNHLAEELGASKVREAHLEARMQ 1208
Cdd:COG3096 568 ELEEQAAEAVEQRSELRQQLEQLR---ARIKELAArapawlAAQDALERLREQSGEALADSQEVTAAMQ 633
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
908-1302 |
4.62e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.58 E-value: 4.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 908 ILDQTKTELEKKTNAVKELEklqhstETELTEALQKrevLETELQNAHGELKSTLRQLQELRDVLQKAQLSL---EEKYT 984
Cdd:PRK02224 181 VLSDQRGSLDQLKAQIEEKE------EKDLHERLNG---LESELAELDEEIERYEEQREQARETRDEADEVLeehEERRE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 985 TIKDLTAELRECKMEIEDKKQEllemDQALKERnwelkqraaqvthldmtIREHRGEMEQKIIKLEGTLEKSELELKEcN 1064
Cdd:PRK02224 252 ELETLEAEIEDLRETIAETERE----REELAEE-----------------VRDLRERLEELEEERDDLLAEAGLDDAD-A 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1065 KQIESLNDKLQNAKEQLREKefiMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQyiatqykEAIDLGQELRLTREQV 1144
Cdd:PRK02224 310 EAVEARREELEDRDEELRDR---LEECRVAAQAHNEEAESLREDADDLEERAEELRE-------EAAELESELEEAREAV 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1145 QNSHTELAEARhqqvqaqREIERLSSELEDMKQLSKEKDAHGNHLAEELGASKVREAHLEARMQaEIKKLSAEVESLKEA 1224
Cdd:PRK02224 380 EDRREEIEELE-------EEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLR-TARERVEEAEALLEA 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1225 YHMEMISHQenhakwkISADSQKSSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEA--LLTKESELTRL 1302
Cdd:PRK02224 452 GKCPECGQP-------VEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIerLEERREDLEEL 524
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
817-1292 |
6.71e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.92 E-value: 6.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 817 LEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGE 896
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 897 NKAMH--LSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQK 974
Cdd:COG4717 127 LLPLYqeLEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQ 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 975 AQLSLEEKYTTIKDLTAELREcKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQK--------- 1045
Cdd:COG4717 207 RLAELEEELEEAQEELEELEE-ELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAgvlflvlgl 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1046 IIKLEGTLEKSELELKECNKQIESLN--DKLQNA--KEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQ 1121
Cdd:COG4717 286 LALLFLLLAREKASLGKEAEELQALPalEELEEEelEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQL 365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1122 yiatqykeaIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMkqlskekdahgnhLAEELGASKVR-E 1200
Cdd:COG4717 366 ---------EELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQ-------------LEELLGELEELlE 423
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1201 AHLEARMQAEIKKLSAEVESLKEayHMEMISHQENHAKWKISADSQKSSVQQLNEQLEKAKLELEE----------AQDT 1270
Cdd:COG4717 424 ALDEEELEEELEELEEELEELEE--ELEELREELAELEAELEQLEEDGELAELLQELEELKAELRElaeewaalklALEL 501
|
490 500
....*....|....*....|....
gi 1034558170 1271 VSNLHQQVQDRN--EVIEAANEAL 1292
Cdd:COG4717 502 LEEAREEYREERlpPVLERASEYF 525
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
936-1304 |
7.21e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 51.11 E-value: 7.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 936 ELTEALQKREVLETELQNAHGEL---KSTLRQ----------LQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIED 1002
Cdd:COG3096 314 ELEELSARESDLEQDYQAASDHLnlvQTALRQqekieryqedLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDS 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1003 KKQELLEMDQALKErnweLKQRAAQVthldmtirehrgemeQKIIKlegTLEKSELELKECNKQIESLNDKLQNAKEQLR 1082
Cdd:COG3096 394 LKSQLADYQQALDV----QQTRAIQY---------------QQAVQ---ALEKARALCGLPDLTPENAEDYLAAFRAKEQ 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1083 EKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQY-KEAIDLGQELRLTREQVQNSHTELAEARhQQVQA 1161
Cdd:COG3096 452 QATEEVLELEQKLSVADAARRQFEKAYELVCKIAGEVERSQAWQTaRELLRRYRSQQALAQRLQQLRAQLAELE-QRLRQ 530
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1162 QREIERLSSELEdmKQLSKEKDAhgnhlAEELgaskvreAHLEARMQAEIKKLSAEVESLKEAyHMEMiSHQENHAKWKI 1241
Cdd:COG3096 531 QQNAERLLEEFC--QRIGQQLDA-----AEEL-------EELLAELEAQLEELEEQAAEAVEQ-RSEL-RQQLEQLRARI 594
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034558170 1242 SADSQKSSV------------QQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEvIEAANEALltkESELTRLQA 1304
Cdd:COG3096 595 KELAARAPAwlaaqdalerlrEQSGEALADSQEVTAAMQQLLEREREATVERDE-LAARKQAL---ESQIERLSQ 665
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
935-1208 |
7.60e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 50.99 E-value: 7.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 935 TELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKD--------LTAELRECKMEIEDKKQE 1006
Cdd:pfam12128 244 TKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDqwkekrdeLNGELSAADAAVAKDRSE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1007 LLEMD-QALKERNWELKQRAAQVTHLDmTIREHRGEMEQKIIKLEGTLEKSELELK--------ECNKQIESLNDKLQNA 1077
Cdd:pfam12128 324 LEALEdQHGAFLDADIETAAADQEQLP-SWQSELENLEERLKALTGKHQDVTAKYNrrrskikeQNNRDIAGIKDKLAKI 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1078 KEQL-REKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELrltrEQVQNSHTELAEARH 1156
Cdd:pfam12128 403 REARdRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELL----LQLENFDERIERARE 478
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1034558170 1157 QQVQAQREIERLSSELEDMKQLSKEKDAHgnHLAEELGASKVREAHLEARMQ 1208
Cdd:pfam12128 479 EQEAANAEVERLQSELRQARKRRDQASEA--LRQASRRLEERQSALDELELQ 528
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
940-1174 |
7.67e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.68 E-value: 7.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 940 ALQKREVLETE---LQNAHGELKSTLRQLQELRDVLQKAQLS---LEEKYTTIKDLTAELRECkMEIEDKKQELLEMDQA 1013
Cdd:COG4913 608 NRAKLAALEAElaeLEEELAEAEERLEALEAELDALQERREAlqrLAEYSWDEIDVASAEREI-AELEAELERLDASSDD 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1014 LKernwELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQ 1093
Cdd:COG4913 687 LA----ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDA 762
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1094 EISQLKKEIERTQQRMKEM-----ESVMKEQEQYIATQYKEAIDLGQELRlTREQVQNSHTELAE---ARHQQ------- 1158
Cdd:COG4913 763 VERELRENLEERIDALRARlnraeEELERAMRAFNREWPAETADLDADLE-SLPEYLALLDRLEEdglPEYEErfkelln 841
|
250
....*....|....*.
gi 1034558170 1159 VQAQREIERLSSELED 1174
Cdd:COG4913 842 ENSIEFVADLLSKLRR 857
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
232-1070 |
8.10e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 50.74 E-value: 8.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 232 KRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKVQAEEEILERNLTnCEKENKRLQERCGLYKSELEILKEKLRQLKEE 311
Cdd:pfam02463 181 ETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLL-YLDYLKLNEERIDLLQELLRDEQEEIESSKQE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 312 NNNGKEKLRIMAVKNSEVMAQLTESRQSILKLESELENKDEILRDKFSLMNENRELKVRVAAQNERLDLCQQEIESSRVE 391
Cdd:pfam02463 260 IEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEE 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 392 LRSLEKIISQLPLKRELfgFKSYLSKYQMSSFSNKEDRCIGCCEANKLVISELRIK---LAIKEAEIQKLHANLTANQLS 468
Cdd:pfam02463 340 LEKELKELEIKREAEEE--EEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKeeeLELKSEEEKEAQLLLELARQL 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 469 QSLITCNDSQESSKLSSLETEPVKLGGHQVAESVKDQNQHTMNKQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAH 548
Cdd:pfam02463 418 EDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEE 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 549 RTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKIRSLETNINTEHE 628
Cdd:pfam02463 498 RSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGA 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 629 KICLAFEKAKKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKK 708
Cdd:pfam02463 578 RKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEG 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 709 DEALKALQNQVSEETIkvRQLDSALEICKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVI 788
Cdd:pfam02463 658 LAEKSEVKASLSELTK--ELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKIN 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 789 LQHTLQQQQQMLQQEtirngELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTAR 868
Cdd:pfam02463 736 EELKLLKQKIDEEEE-----EEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEEL 810
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 869 QVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKEL--EKLQHSTETELTEALQKREV 946
Cdd:pfam02463 811 KEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELlqELLLKEEELEEQKLKDELES 890
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 947 LETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAA 1026
Cdd:pfam02463 891 KEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKE 970
|
810 820 830 840
....*....|....*....|....*....|....*....|....
gi 1034558170 1027 QVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESL 1070
Cdd:pfam02463 971 ELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEE 1014
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
563-1223 |
8.26e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 50.74 E-value: 8.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 563 KASNSSKLESEMTKKCSQLLTLEkqLEEKIVAYSSIAAKNAELEQELMEKNEKIRSLETNINTEHEKI--CLAFEKAKKI 640
Cdd:TIGR00618 187 AKKKSLHGKAELLTLRSQLLTLC--TPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQeeQLKKQQLLKQ 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 641 HLEQHKEMEKQIERLEAQLEKKDQQFKEQEktmsmlqqdIICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVS 720
Cdd:TIGR00618 265 LRARIEELRAQEAVLEETQERINRARKAAP---------LAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVK 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 721 EEtikvrqldSALEICKEELVLHLNQLEGNKEKFEKQLKKKseEVYCLQKELKIKNHSLQETSEqnvilqhTLQQQQQML 800
Cdd:TIGR00618 336 QQ--------SSIEEQRRLLQTLHSQEIHIRDAHEVATSIR--EISCQQHTLTQHIHTLQQQKT-------TLTQKLQSL 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 801 QQETIRNGELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVK--IEMDQYK 878
Cdd:TIGR00618 399 CKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKerEQQLQTK 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 879 EELSKMEKEImhlKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQhsteTELTEALQKREVLETELQNAHGEL 958
Cdd:TIGR00618 479 EQIHLQETRK---KAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLT----RRMQRGEQTYAQLETSEEDVYHQL 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 959 KSTLRQLQELRDVLQKAQ---LSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHlDMTI 1035
Cdd:TIGR00618 552 TSERKQRASLKEQMQEIQqsfSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQD-LQDV 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1036 REHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNA-KEQLREKEFIMLQNE-QEISQLKKEIERTQQRMKEME 1113
Cdd:TIGR00618 631 RLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKeLLASRQLALQKMQSEkEQLTYWKEMLAQCQTLLRELE 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1114 SVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMkqlskekdahgnhlAEEL 1193
Cdd:TIGR00618 711 THIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTA--------------ALQT 776
|
650 660 670
....*....|....*....|....*....|
gi 1034558170 1194 GAskvREAHLEARMQAEIKKLSAEVESLKE 1223
Cdd:TIGR00618 777 GA---ELSHLAAEIQFFNRLREEDTHLLKT 803
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
565-1113 |
1.26e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 49.90 E-value: 1.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 565 SNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKIrsleTNINTEHEKICLAFEKAKKIHLEQ 644
Cdd:PRK01156 183 SNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDY----NNLKSALNELSSLEDMKNRYESEI 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 645 hkemeKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHH-----------LESLDRLLTESKGEMKK--ENMKKDEA 711
Cdd:PRK01156 259 -----KTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNyindyfkykndIENKKQILSNIDAEINKyhAIIKKLSV 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 712 LKALQNQVSEETIKvrqldsaleicKEELVLHLNQLEGNKEKFEKQLKKKSeevyclQKELKIKNHSLQETSEQNVILQH 791
Cdd:PRK01156 334 LQKDYNDYIKKKSR-----------YDDLNNQILELEGYEMDYNSYLKSIE------SLKKKIEEYSKNIERMSAFISEI 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 792 TLQQQQQMLQQETIRNgELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEkcesaaheadLKRQKVIELTGT---AR 868
Cdd:PRK01156 397 LKIQEIDPDAIKKELN-EINVKLQDISSKVSSLNQRIRALRENLDELSRNMEM----------LNGQSVCPVCGTtlgEE 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 869 QVKIEMDQYKEELSKMEKEIMHLKRDG---ENKAMHLSQLDMILDqtKTELEKKTNAVKELEKLQHS------TETELTE 939
Cdd:PRK01156 466 KSNHIINHYNEKKSRLEEKIREIEIEVkdiDEKIVDLKKRKEYLE--SEEINKSINEYNKIESARADledikiKINELKD 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 940 ALQKREVLETELQNAH-GELKSTLRQLQELRDV-----LQKAQLSLEEKYTTIKDLTAELRECKMEIEDKK-------QE 1006
Cdd:PRK01156 544 KHDKYEEIKNRYKSLKlEDLDSKRTSWLNALAVislidIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKsyidksiRE 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1007 LLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQK--IIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREK 1084
Cdd:PRK01156 624 IENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIdsIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLEST 703
|
570 580
....*....|....*....|....*....
gi 1034558170 1085 EFIMLQNEQEISQLKKEIERTQQRMKEME 1113
Cdd:PRK01156 704 IEILRTRINELSDRINDINETLESMKKIK 732
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
751-1041 |
1.93e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 49.09 E-value: 1.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 751 KEKFEKQLKKKSEEVyclqKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQK 830
Cdd:COG2433 349 KNKFERVEKKVPPDV----DRDEVKARVIRGLSIEEALEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVER 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 831 QRESSAEKLRKMEEKCESAAH-EADLKRqkvieltgtARQVKIEMDQYKEELSKMEKEIMHLKRDgenkamhLSQLDMIL 909
Cdd:COG2433 425 LEAEVEELEAELEEKDERIERlERELSE---------ARSEERREIRKDREISRLDREIERLERE-------LEEERERI 488
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 910 DqtktELEKKTNAVKELEKLQHSTETELT---EALQKREVLETE------------LQNAHGELKSTLRQLQEL--RDVL 972
Cdd:COG2433 489 E----ELKRKLERLKELWKLEHSGELVPVkvvEKFTKEAIRRLEeeyglkegdvvyLRDASGAGRSTAELLAEAgpRAVI 564
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034558170 973 QKAQLSlEEKYTTIKDLT-AELRECKMEIEDK------KQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGE 1041
Cdd:COG2433 565 VPGELS-EAADEVLFEEGiPVLPAEDVTIQEVddlavvDEEELEAAIEDWEERAEERRREKKAEMLERLISEYRAE 639
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
147-937 |
2.05e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.58 E-value: 2.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 147 ELTQSRAKVSMLESAQQQAASVPILEEQIINLEAEVSAQDKVLREAENKLEQSQKMVIEKEQSLQESKEECIKLKVDLLE 226
Cdd:pfam02463 220 ELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELK 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 227 QTK-QGKRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKVQAEEEILERNLTNCEKENKRLQERCGLYKSELEILKEKL 305
Cdd:pfam02463 300 SELlKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKK 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 306 RQLKEENNNGKEKLRIMA------VKNSEVMAQLTESRQSILKLESELENKDEILRDKFSLMNENRELKVRVAAQNERLD 379
Cdd:pfam02463 380 KLESERLSSAAKLKEEELelkseeEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELK 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 380 LCQQEIESSRVELRSLEKIISQLPLKRELfgfksYLSKYQMSSFSNKEDRCIGCCEANKLVISELRIKLAIKEAEIQKLH 459
Cdd:pfam02463 460 LLKDELELKKSEDLLKETQLVKLQEQLEL-----LLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDL 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 460 ANLTANQLSQSLITCND------SQESSKLSSLETEPVKLGGHQVAESVKDQNQHTMNKQYEKERQRLVTGIEELRTKLI 533
Cdd:pfam02463 535 GVAVENYKVAISTAVIVevsataDEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLE 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 534 QIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYsSIAAKNAELEQELMEKN 613
Cdd:pfam02463 615 ADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELL-EIQELQEKAESELAKEE 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 614 EKIRSLETNINTEHEKICLAFEKAKKIHLEQHKEMEKQIE-RLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDR 692
Cdd:pfam02463 694 ILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKiNEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKE 773
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 693 LLTESKGEMKKENMKKDEALKALQNQVSEETIKVRQLDSALEICKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKEL 772
Cdd:pfam02463 774 KELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAE 853
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 773 KIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHE 852
Cdd:pfam02463 854 EELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKY 933
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 853 ADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHS 932
Cdd:pfam02463 934 EEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIE 1013
|
....*
gi 1034558170 933 TETEL 937
Cdd:pfam02463 1014 ETCQR 1018
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
909-1113 |
2.07e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 49.24 E-value: 2.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 909 LDQTKTELEKKTNAVKELeKLQH---STETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEkyTT 985
Cdd:COG3206 184 LPELRKELEEAEAALEEF-RQKNglvDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPE--LL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 986 IKDLTAELREckmEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREhrgEMEQKIIKLEGTLEKSELELKECNK 1065
Cdd:COG3206 261 QSPVIQQLRA---QLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQ---EAQRILASLEAELEALQAREASLQA 334
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1034558170 1066 QIESLNDKLQNAKEQlrEKEFIMLQNEQEISQlkKEIERTQQRMKEME 1113
Cdd:COG3206 335 QLAQLEARLAELPEL--EAELRRLEREVEVAR--ELYESLLQRLEEAR 378
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
710-1113 |
2.31e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.00 E-value: 2.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 710 EALKALQNQVSEETIKVRQLdsaleickEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVIL 789
Cdd:COG4717 71 KELKELEEELKEAEEKEEEY--------AELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELA 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 790 QHTLQQQQQMLQQETIRngELEDTQTKLEKQVSKLEQEL----QKQRESSAEKLRKMEEKCESAaheadlkRQKVIELTG 865
Cdd:COG4717 143 ELPERLEELEERLEELR--ELEEELEELEAELAELQEELeellEQLSLATEEELQDLAEELEEL-------QQRLAELEE 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 866 TARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDM------------------------------------IL 909
Cdd:COG4717 214 ELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAaallallglggsllsliltiagvlflvlgllallflLL 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 910 DQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYtTIKDL 989
Cdd:COG4717 294 AREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEE-LEQEI 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 990 TAELRECKMEIEDKKQELLEMDQalkernwELKQRAAQVTHLDMTIREHRGEMEQKIikLEGTLEKSELELKECNKQIES 1069
Cdd:COG4717 373 AALLAEAGVEDEEELRAALEQAE-------EYQELKEELEELEEQLEELLGELEELL--EALDEEELEEELEELEEELEE 443
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 1034558170 1070 LNDKLQNAKEQLREKEFIM--LQNEQEISQLKKEIERTQQRMKEME 1113
Cdd:COG4717 444 LEEELEELREELAELEAELeqLEEDGELAELLQELEELKAELRELA 489
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
170-348 |
2.35e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 48.62 E-value: 2.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 170 ILEEQIINLEAEVsaqDKVLREAENKLEQsqkmviEKEQSLQESKEECIKLKvdlleqtkqgkraerqrnealynaEELS 249
Cdd:PRK12704 28 IAEAKIKEAEEEA---KRILEEAKKEAEA------IKKEALLEAKEEIHKLR------------------------NEFE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 250 KAFQQYKKKVAEKLEKVQAEEEILERNLTNCEKENKRLQERCGLYKSELEILKEKLRQLKEENNNGKEKLrimavknsEV 329
Cdd:PRK12704 75 KELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQEL--------ER 146
|
170 180
....*....|....*....|..
gi 1034558170 330 MAQLT--ESRQSIL-KLESELE 348
Cdd:PRK12704 147 ISGLTaeEAKEILLeKVEEEAR 168
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
586-1045 |
2.64e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.61 E-value: 2.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 586 KQLEEKIVAYSSIAAKNAELEQELMEKNEKIRSLETNINTehekicLAFEKAKKIHLEQHKEMEKQIERLEAQLEKKDQQ 665
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEE------LREELEKLEKLLQLLPLYQELEALEAELAELPER 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 666 FKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSEETIKVRQLDSALEICKEElvlhLN 745
Cdd:COG4717 148 LEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEE----LE 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 746 QLEGNKEKFEKQLkkkseEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQE---TIRNGELEDTQTKLEKQVS 822
Cdd:COG4717 224 ELEEELEQLENEL-----EAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAgvlFLVLGLLALLFLLLAREKA 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 823 KLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKiEMDQYKEELSKMEKEIMHLKRDGENKAMhl 902
Cdd:COG4717 299 SLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIE-ELQELLREAEELEEELQLEELEQEIAAL-- 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 903 sqLDMILDQTKTELEKKTNAVKELEKLQhsteteltealQKREVLETELQNAHGELKSTLRQLQ--ELRDVLQKAQLSLE 980
Cdd:COG4717 376 --LAEAGVEDEEELRAALEQAEEYQELK-----------EELEELEEQLEELLGELEELLEALDeeELEEELEELEEELE 442
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 981 EKYTTIKDLTAELRECKMEIE-----DKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQK 1045
Cdd:COG4717 443 ELEEELEELREELAELEAELEqleedGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREE 512
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1041-1193 |
2.72e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 47.23 E-value: 2.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1041 EMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRM------KEMES 1114
Cdd:COG1579 14 ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLgnvrnnKEYEA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1115 VMKEqeqyIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELE--------DMKQLSKEKDAHG 1186
Cdd:COG1579 94 LQKE----IESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDeelaeleaELEELEAEREELA 169
|
....*..
gi 1034558170 1187 NHLAEEL 1193
Cdd:COG1579 170 AKIPPEL 176
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
947-1119 |
2.77e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 47.23 E-value: 2.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 947 LETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKE--RNWELKQR 1024
Cdd:COG1579 15 LDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNvrNNKEYEAL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1025 AAQVTHLdmtiREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREkefimlqneqEISQLKKEIER 1104
Cdd:COG1579 95 QKEIESL----KRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDE----------ELAELEAELEE 160
|
170
....*....|....*
gi 1034558170 1105 TQQRMKEMESVMKEQ 1119
Cdd:COG1579 161 LEAEREELAAKIPPE 175
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
814-1027 |
2.89e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 48.29 E-value: 2.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 814 QTKLEKQVSKLeQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKR 893
Cdd:COG3883 15 DPQIQAKQKEL-SELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERAR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 894 DGENKAMHLSQLDMILDQTK-TELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVL 972
Cdd:COG3883 94 ALYRSGGSVSYLDVLLGSESfSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAEL 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1034558170 973 QKAQlslEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQ 1027
Cdd:COG3883 174 EAQQ---AEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAA 225
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1036-1133 |
3.95e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 48.32 E-value: 3.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1036 REHRGEMEQKIIKLEGTLEK-----SEL--ELKECNKQIESLNDKLQNAKEQLREKefimLQNEQEISQLKKEIERTQQR 1108
Cdd:COG2433 405 ERELTEEEEEIRRLEEQVERleaevEELeaELEEKDERIERLERELSEARSEERRE----IRKDREISRLDREIERLERE 480
|
90 100
....*....|....*....|....*
gi 1034558170 1109 MKEMESVMKEQEQYIAtQYKEAIDL 1133
Cdd:COG2433 481 LEEERERIEELKRKLE-RLKELWKL 504
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
939-1143 |
5.11e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 47.70 E-value: 5.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 939 EALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTtikDLTAELRECKMEIEDKKQELLEMDQALKERN 1018
Cdd:PHA02562 178 ELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYD---ELVEEAKTIKAEIEELTDELLNLVMDIEDPS 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1019 WELKQRAAQVTHLDMTIREHRGEME------------QKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEqlREKEF 1086
Cdd:PHA02562 255 AALNKLNTAAAKIKSKIEQFQKVIKmyekggvcptctQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEE--IMDEF 332
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1034558170 1087 IMLQNEQ-----EISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQ 1143
Cdd:PHA02562 333 NEQSKKLlelknKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKT 394
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1064-1225 |
6.30e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.70 E-value: 6.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1064 NKQIESLNDKLQNAKEQL----REKEFIMLQNE-----QEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLG 1134
Cdd:COG3206 181 EEQLPELRKELEEAEAALeefrQKNGLVDLSEEaklllQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1135 Q--ELRLTREQVQNSHTELAEAR------HQQVQA-QREIERLSSELED-MKQLSKEKDAHGNHLAEELGASKVREAHLE 1204
Cdd:COG3206 261 QspVIQQLRAQLAELEAELAELSarytpnHPDVIAlRAQIAALRAQLQQeAQRILASLEAELEALQAREASLQAQLAQLE 340
|
170 180
....*....|....*....|....*..
gi 1034558170 1205 ARM------QAEIKKLSAEVESLKEAY 1225
Cdd:COG3206 341 ARLaelpelEAELRRLEREVEVARELY 367
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
967-1291 |
6.34e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.75 E-value: 6.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 967 ELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKqELLEMDQALKERNWELKQRAAQVTHldmTIREHRGEMEQKI 1046
Cdd:PRK03918 145 ESREKVVRQILGLDDYENAYKNLGEVIKEIKRRIERLE-KFIKRTENIEELIKEKEKELEEVLR---EINEISSELPELR 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1047 IKLEGtLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIAtq 1126
Cdd:PRK03918 221 EELEK-LEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIK-- 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1127 ykeaidLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDahgnHLAEELGASKVREAHLEar 1206
Cdd:PRK03918 298 ------LSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLK----ELEKRLEELEERHELYE-- 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1207 mqaEIKKLSAEVESLKeayhmemishqenhakwKISADSQKSSVQQLNEQLEKAKLELEEAQDTV----SNLHQQVQDRN 1282
Cdd:PRK03918 366 ---EAKAKKEELERLK-----------------KRLTGLTPEKLEKELEELEKAKEEIEEEISKItariGELKKEIKELK 425
|
....*....
gi 1034558170 1283 EVIEAANEA 1291
Cdd:PRK03918 426 KAIEELKKA 434
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
807-1152 |
6.61e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.91 E-value: 6.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 807 NGELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEK 886
Cdd:pfam12128 631 NGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKR 710
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 887 EimHLKRDGENKAMHLSQLDMILDQTKTELEK-KTNAVKELEKLQHSTETELtEALQKREVLETELQNAHGELKSTLRQL 965
Cdd:pfam12128 711 E--ARTEKQAYWQVVEGALDAQLALLKAAIAArRSGAKAELKALETWYKRDL-ASLGVDPDVIAKLKREIRTLERKIERI 787
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 966 QELRDVLQKAQLSLEEKYTTIKD-LTAELRECKMEIEDKKQELLEMDQALKERNWEL-KQRAA---QVTHLDMTIREHRG 1040
Cdd:pfam12128 788 AVRRQEVLRYFDWYQETWLQRRPrLATQLSNIERAISELQQQLARLIADTKLRRAKLeMERKAsekQQVRLSENLRGLRC 867
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1041 EMEQ-KIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKefimlqNEQEISQLKK----EIERTQQRMKEMESV 1115
Cdd:pfam12128 868 EMSKlATLKEDANSEQAQGSIGERLAQLEDLKLKRDYLSESVKKY------VEHFKNVIADhsgsGLAETWESLREEDHY 941
|
330 340 350
....*....|....*....|....*....|....*..
gi 1034558170 1116 MKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELA 1152
Cdd:pfam12128 942 QNDKGIRLLDYRKLVPYLEQWFDVRVPQSIMVLREQV 978
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
499-1011 |
8.10e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.44 E-value: 8.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 499 AESVKDQNQHTMNKQYEKERQRLVTGIEELRTKL--IQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTK 576
Cdd:PTZ00121 1298 AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKAdaAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAK 1377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 577 KCSQllTLEKQLEEKIVAYSsiAAKNAEleqELMEKNEKIRSLETNINTEHEKICLAFEKAKKIHLEQHKEMEKQIERLE 656
Cdd:PTZ00121 1378 KKAD--AAKKKAEEKKKADE--AKKKAE---EDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAK 1450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 657 AQLEKKDQQFKEQEKTMSMLQQDIICKQHHLEsldRLLTESKGEMKKENMKKDEALKALQ-NQVSEETIKVRQLDSALEI 735
Cdd:PTZ00121 1451 KKAEEAKKAEEAKKKAEEAKKADEAKKKAEEA---KKADEAKKKAEEAKKKADEAKKAAEaKKKADEAKKAEEAKKADEA 1527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 736 CKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQT 815
Cdd:PTZ00121 1528 KKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKM 1607
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 816 KLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEadlKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDG 895
Cdd:PTZ00121 1608 KAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAE---EKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAE 1684
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 896 ENKAMHLSQLdmildQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKA 975
Cdd:PTZ00121 1685 EDEKKAAEAL-----KKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKI 1759
|
490 500 510
....*....|....*....|....*....|....*.
gi 1034558170 976 QLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMD 1011
Cdd:PTZ00121 1760 AHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRME 1795
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
939-1180 |
8.89e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 47.21 E-value: 8.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 939 EALQKREVLETELQNAHGELKSTLRQLqelrDVLQKAQLSLEEKYTTIKDLTAELRECKMEIED-KKQELLEMDQAL-KE 1016
Cdd:PRK11281 46 DALNKQKLLEAEDKLVQQDLEQTLALL----DKIDRQKEETEQLKQQLAQAPAKLRQAQAELEAlKDDNDEETRETLsTL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1017 RNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQN---AKEQLREKEFIMLQNEQ 1093
Cdd:PRK11281 122 SLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGgkvGGKALRPSQRVLLQAEQ 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1094 -----EISQLKKEIERTQQrmkeMESVMKEQEQYIAtqykEAID-LGQELRLTREQVQNSHTELAEARHQQVQAQREIER 1167
Cdd:PRK11281 202 allnaQNDLQRKSLEGNTQ----LQDLLQKQRDYLT----ARIQrLEHQLQLLQEAINSKRLTLSEKTVQEAQSQDEAAR 273
|
250
....*....|....*....
gi 1034558170 1168 ------LSSELEDMKQLSK 1180
Cdd:PRK11281 274 iqanplVAQELEINLQLSQ 292
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
829-1153 |
1.04e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.04 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 829 QKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEmdqyKEELSKMEKEIMHLKRDGENKAMHLSQLDMI 908
Cdd:pfam17380 286 ERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMD----RQAAIYAEQERMAMERERELERIRQEERKRE 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 909 LDQTKT-ELEKKTNAVKELEKLQhstetelTEALQKREVLETELQNAhgelkstlrqlqelrdvlQKAQLSLEEKYTTIK 987
Cdd:pfam17380 362 LERIRQeEIAMEISRMRELERLQ-------MERQQKNERVRQELEAA------------------RKVKILEEERQRKIQ 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 988 DLTAELRECKMEIEDKKQELLEMDQALKERNWE-LKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQ 1066
Cdd:pfam17380 417 QQKVEMEQIRAEQEEARQREVRRLEEERAREMErVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKI 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1067 IESLNDKLQNA------KEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQY-IATQYKEAIDLGQELRL 1139
Cdd:pfam17380 497 LEKELEERKQAmieeerKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMrKATEERSRLEAMERERE 576
|
330
....*....|....
gi 1034558170 1140 TREQVQNSHTELAE 1153
Cdd:pfam17380 577 MMRQIVESEKARAE 590
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
328-979 |
1.30e-04 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 46.67 E-value: 1.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 328 EVMAQLTESRQSILKLESELENKDEILRdkfSLMNENRELKVRVAAQNERLDLC-------QQEIESSRVELRSLEKIIS 400
Cdd:pfam07111 56 EGSQALSQQAELISRQLQELRRLEEEVR---LLRETSLQQKMRLEAQAMELDALavaekagQAEAEGLRAALAGAEMVRK 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 401 QLP--LKRELFGFKSyLSKYQMSSFSNKEDRCIGC----CEANKLVISELRIKLA--IKEAEIQKLHANLTANQLSQSli 472
Cdd:pfam07111 133 NLEegSQRELEEIQR-LHQEQLSSLTQAHEEALSSltskAEGLEKSLNSLETKRAgeAKQLAEAQKEAELLRKQLSKT-- 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 473 tcndSQESSKLSSLETEPVKLGGHQVAESVKDQnqhtmnkQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQ 552
Cdd:pfam07111 210 ----QEELEAQVTLVESLRKYVGEQVPPEVHSQ-------TWELERQELLDTMQHLQEDRADLQATVELLQVRVQSLTHM 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 553 FQLIQEELLEKASNSSKLESEMTKKCSQLLtleKQLEEKIVAYSsiaaknAELEQELMEKNEKIRSLETNINTEHEKI-C 631
Cdd:pfam07111 279 LALQEEELTRKIQPSDSLEPEFPKKCRSLL---NRWREKVFALM------VQLKAQDLEHRDSVKQLRGQVAELQEQVtS 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 632 LAFEKAKKIHLEQHKEMEKQIERLEAQleKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEA 711
Cdd:pfam07111 350 QSQEQAILQRALQDKAAEVEVERMSAK--GLQMELSRAQEARRRQQQQTASAEEQLKFVVNAMSSTQIWLETTMTRVEQA 427
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 712 LKALQNQVSEETIKVRQLDSALEICKEELVLHLNQLEGN---------KEKFEKQLKKKSEEVYCLQKELKIKNHSLQEt 782
Cdd:pfam07111 428 VARIPSLSNRLSYAVRKVHTIKGLMARKVALAQLRQESCpppppappvDADLSLELEQLREERNRLDAELQLSAHLIQQ- 506
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 783 seqnvilqhtlqqqqqmLQQETIRNGELEDTQtkLEKQVSKLEQELQKQRESSA---EKLRKMEEKCESAAHEADLKRQK 859
Cdd:pfam07111 507 -----------------EVGRAREQGEAERQQ--LSEVAQQLEQELQRAQESLAsvgQQLEVARQGQQESTEEAASLRQE 567
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 860 VI---ELTGTARQVKIE--MDQYKEELSKMEKEIMHLKRDGENKAMHLSQLdmildQTKTELEKKTNavKELEKLQHSTE 934
Cdd:pfam07111 568 LTqqqEIYGQALQEKVAevETRLREQLSDTKRRLNEARREQAKAVVSLRQI-----QHRATQEKERN--QELRRLQDEAR 640
|
650 660 670 680
....*....|....*....|....*....|....*....|....*
gi 1034558170 935 TELTEALQKRevlETELQNAHGELKSTLRQLQELRDVLQKAQLSL 979
Cdd:pfam07111 641 KEEGQRLARR---VQELERDKNLMLATLQQEGLLSRYKQQRLLAV 682
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
809-1195 |
1.48e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 46.48 E-value: 1.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 809 ELEDTQTKLEKQVSKLEqELQKQRESSAEKLRKMEEKCESAAHE-ADLkrQKVIELTGTaRQVkiemdQYKEELSKMEKE 887
Cdd:COG3096 355 DLEELTERLEEQEEVVE-EAAEQLAEAEARLEAAEEEVDSLKSQlADY--QQALDVQQT-RAI-----QYQQAVQALEKA 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 888 imhlKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELE-KLQHSTE--TELTEALQ--KREVLETELQNAHGELKSTL 962
Cdd:COG3096 426 ----RALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEqKLSVADAarRQFEKAYElvCKIAGEVERSQAWQTARELL 501
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 963 RQLQELRDVLQKAQlSLEEKYttikdltAELREcKMEIEDKKQELLEmdqalkernwELKQRAAQVTHLDMTIREHRGEM 1042
Cdd:COG3096 502 RRYRSQQALAQRLQ-QLRAQL-------AELEQ-RLRQQQNAERLLE----------EFCQRIGQQLDAAEELEELLAEL 562
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1043 EQkiiklegtlekselelkecnkQIESLNDKLQNAKEQLrekefimlqneqeiSQLKKEIERTQQRMKEMES------VM 1116
Cdd:COG3096 563 EA---------------------QLEELEEQAAEAVEQR--------------SELRQQLEQLRARIKELAArapawlAA 607
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034558170 1117 KEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARhQQVQAQREieRLSSELEDMKQLSKEKDAHGNHLAEELGA 1195
Cdd:COG3096 608 QDALERLREQSGEALADSQEVTAAMQQLLEREREATVER-DELAARKQ--ALESQIERLSQPGGAEDPRLLALAERLGG 683
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
438-1299 |
1.62e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 46.32 E-value: 1.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 438 KLVISELRIKLAIKEAEIQKLHANLTANQLSQSLITCNDSQESSKLSSLETEPvklgghqvaesvkdQNQHTMNKQYEKE 517
Cdd:pfam01576 228 QAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDL--------------ESERAARNKAEKQ 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 518 RQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLL-TLEKQLEEKIVAYS 596
Cdd:pfam01576 294 RRDLGEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALeELTEQLEQAKRNKA 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 597 SIAAKNAELEQELMEKNEKIRSLETnintehekiclafekakkihleQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSML 676
Cdd:pfam01576 374 NLEKAKQALESENAELQAELRTLQQ----------------------AKQDSEHKRKKLEGQLQELQARLSESERQRAEL 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 677 QQDIICKQHHLESLDRLLTESKGE---MKKENMKKDEALKALQNQVSEETIKVRQLDS---ALEICKEELVLHLNQLEGN 750
Cdd:pfam01576 432 AEKLSKLQSELESVSSLLNEAEGKnikLSKDVSSLESQLQDTQELLQEETRQKLNLSTrlrQLEDERNSLQEQLEEEEEA 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 751 KEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQK 830
Cdd:pfam01576 512 KRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDH 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 831 QRE--SSAEKLRKMEEKCESAAHEADLKRQKvieltgtarqvkiEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMI 908
Cdd:pfam01576 592 QRQlvSNLEKKQKKFDQMLAEEKAISARYAE-------------ERDRAEAEAREKETRALSLARALEEALEAKEELERT 658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 909 LDQTKTELEKKTNA-------VKELEKLQHSTETELTEALQKREVLETELQ---NAHGELKSTLRQL--QELRDVLQKAQ 976
Cdd:pfam01576 659 NKQLRAEMEDLVSSkddvgknVHELERSKRALEQQVEEMKTQLEELEDELQateDAKLRLEVNMQALkaQFERDLQARDE 738
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 977 LSLEEKyttiKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVThldmTIREHRGEMEQKIIKLEGTLEKS 1056
Cdd:pfam01576 739 QGEEKR----RQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQID----AANKGREEAVKQLKKLQAQMKDL 810
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1057 ELEL--------------KECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIER-------TQQRMKEMESV 1115
Cdd:pfam01576 811 QRELeearasrdeilaqsKESEKKLKNLEAELLQLQEDLAASERARRQAQQERDELADEIASgasgksaLQDEKRRLEAR 890
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1116 MKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEAR-------HQQVQAQREIERLSSELEDMKQLSKEKDAHGNH 1188
Cdd:pfam01576 891 IAQLEEELEEEQSNTELLNDRLRKSTLQVEQLTTELAAERstsqkseSARQQLERQNKELKAKLQEMEGTVKSKFKSSIA 970
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1189 LAEELGASKVREAHLEARMQAEIKKLSAEVESLKEAYHMEMISHQENHAKWKISADSQKSSVQQLNEQLEKAKLELEEAQ 1268
Cdd:pfam01576 971 ALEAKIAQLEEQLEQESRERQAANKLVRRTEKKLKEVLLQVEDERRHADQYKDQAEKGNSRMKQLKRQLEEAEEEASRAN 1050
|
890 900 910
....*....|....*....|....*....|.
gi 1034558170 1269 DTVSNLHQQVQDRNEVIEAANEALLTKESEL 1299
Cdd:pfam01576 1051 AARRKLQRELDDATESNESMNREVSTLKSKL 1081
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1101-1305 |
2.60e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.21 E-value: 2.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1101 EIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSK 1180
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1181 EKDAHGNHLAEELGASKVREA--------HLEARMQAEIKKLSAEVESLKEAyhmemishqenhakwKISADSQKSSVQQ 1252
Cdd:COG3883 97 RSGGSVSYLDVLLGSESFSDFldrlsalsKIADADADLLEELKADKAELEAK---------------KAELEAKLAELEA 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1034558170 1253 LNEQLEKAKLELE----EAQDTVSNLHQQVQDRNEVIEAANEALLTKESELTRLQAK 1305
Cdd:COG3883 162 LKAELEAAKAELEaqqaEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAA 218
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
180-420 |
2.70e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 2.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 180 AEVSAQDKVLREAENKLEQSQKMVIEKEQSLQESKEECIKLKVDLLEQTKQGKRAERQRNEALYNAEELSKAFQQYKKKV 259
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 260 AEKLEKVQAEEEILERNLTNCEKENK--------------RLQERCGLYKSELEILKEKLRQLKEENNNGKEKLRIMAVK 325
Cdd:COG4942 93 AELRAELEAQKEELAELLRALYRLGRqpplalllspedflDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 326 NSEVMAQLTESRQSILKLESELENKDEILrdkfslmnenRELKVRVAAQNERLDLCQQEIESSRVELRSLEKIISQLPLK 405
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLL----------ARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
250
....*....|....*
gi 1034558170 406 RELFGFKSYLSKYQM 420
Cdd:COG4942 243 TPAAGFAALKGKLPW 257
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
778-1178 |
3.84e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 44.89 E-value: 3.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 778 SLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQREssaeKLRKMEEKCESAAHEADlkr 857
Cdd:pfam07888 39 CLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSRE----KHEELEEKYKELSASSE--- 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 858 qkvieltgtarqvkiEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMildQTKTELEKKTNAVKELEKLQHSTETEl 937
Cdd:pfam07888 112 ---------------ELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVL---ERETELERMKERAKKAGAQRKEEEAE- 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 938 tealqkREVLETELQNAHGELKSTLRQLQELRDvlqkaqlSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKER 1017
Cdd:pfam07888 173 ------RKQLQAKLQQTEEELRSLSKEFQELRN-------SLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEEL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1018 NwELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQeisQ 1097
Cdd:pfam07888 240 R-SLQERLNASERKVEGLGEELSSMAAQRDRTQAELHQARLQAAQLTLQLADASLALREGRARWAQERETLQQSAE---A 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1098 LKKEIERTQQRMKEMESVMKEQEqyiATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSE----LE 1173
Cdd:pfam07888 316 DKDRIEKLSAELQRLEERLQEER---MEREKLEVELGREKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEkqelLE 392
|
....*
gi 1034558170 1174 DMKQL 1178
Cdd:pfam07888 393 YIRQL 397
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
599-836 |
3.96e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 3.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 599 AAKNAELEQELMEKNEKIRSLETNINTEhekiclafEKAKKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQ 678
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAAL--------KKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 679 DIICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSEETIKVRQLDSALEICK---EELVLHLNQLEGNKEKFE 755
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARReqaEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 756 KQLKKKSEevycLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETirnGELEDTQTKLEKQVSKLEQELQKQRESS 835
Cdd:COG4942 171 AERAELEA----LLAELEEERAALEALKAERQKLLARLEKELAELAAEL---AELQQEAEELEALIARLEAEAAAAAERT 243
|
.
gi 1034558170 836 A 836
Cdd:COG4942 244 P 244
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
988-1304 |
3.99e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 45.33 E-value: 3.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 988 DLTAELRECKMEIEDKKQELLEMDQ---ALKERNWELKQRAAQvthldmtIREHRGEMeQKIIKLEGTLEKSELELKECN 1064
Cdd:PRK04863 290 ELRRELYTSRRQLAAEQYRLVEMARelaELNEAESDLEQDYQA-------ASDHLNLV-QTALRQQEKIERYQADLEELE 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1065 KQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMkemesvmkEQEQYIATQYKEAIdlgQELRLTREQV 1144
Cdd:PRK04863 362 ERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQAL--------DVQQTRAIQYQQAV---QALERAKQLC 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1145 QNSHTELAEARHQQVQAQREIERLSSELEDMKQ-LSKEKDAHGNH-----LAEELGASKVR-EAHLEA----RMQAEIKK 1213
Cdd:PRK04863 431 GLPDLTADNAEDWLEEFQAKEQEATEELLSLEQkLSVAQAAHSQFeqayqLVRKIAGEVSRsEAWDVArellRRLREQRH 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1214 LSAEVESLKEAYH-MEMISHQENHAKWKISADSQKSSVQ------------QLNEQLEKAKLELEEAQDTVSNLHQQVQD 1280
Cdd:PRK04863 511 LAEQLQQLRMRLSeLEQRLRQQQRAERLLAEFCKRLGKNlddedeleqlqeELEARLESLSESVSEARERRMALRQQLEQ 590
|
330 340
....*....|....*....|....*..
gi 1034558170 1281 RNEVI---EAANEALLTKESELTRLQA 1304
Cdd:PRK04863 591 LQARIqrlAARAPAWLAAQDALARLRE 617
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
832-1186 |
4.20e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 45.33 E-value: 4.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 832 RESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQ-------VKIEMDQyKEELSKMEKEIMHLKRdgenkamHLSQ 904
Cdd:PRK04863 784 REKRIEQLRAEREELAERYATLSFDVQKLQRLHQAFSRfigshlaVAFEADP-EAELRQLNRRRVELER-------ALAD 855
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 905 LDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKR-EVLETELQNAHgELKSTLRQlqelrdvlQKAQLSLEEKy 983
Cdd:PRK04863 856 HESQEQQQRSQLEQAKEGLSALNRLLPRLNLLADETLADRvEEIREQLDEAE-EAKRFVQQ--------HGNALAQLEP- 925
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 984 ttikdLTAELRECKMEIEDKKQELLEMDQALKErnweLKQRAAQVTHLdMTIREHRG-EMEQKIikLEGTLEKSELeLKE 1062
Cdd:PRK04863 926 -----IVSVLQSDPEQFEQLKQDYQQAQQTQRD----AKQQAFALTEV-VQRRAHFSyEDAAEM--LAKNSDLNEK-LRQ 992
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1063 CNKQIESLNDKlqnAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEqeqyIATQYKEaiDLGQELRLTRE 1142
Cdd:PRK04863 993 RLEQAEQERTR---AREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQD----LGVPADS--GAEERARARRD 1063
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1034558170 1143 QVqnsHTELAEARHQQVQAQREIERLSSELEDM-KQLSK-EKDAHG 1186
Cdd:PRK04863 1064 EL---HARLSANRSRRNQLEKQLTFCEAEMDNLtKKLRKlERDYHE 1106
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
187-784 |
4.37e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.05 E-value: 4.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 187 KVLREAENKLEQsqkmvIEKEQSLQESKEECIKLKVDLLEQTKQGKRAERQRNEALynAEELSKAFQQYK--KKVAEKLE 264
Cdd:PRK03918 169 EVIKEIKRRIER-----LEKFIKRTENIEELIKEKEKELEEVLREINEISSELPEL--REELEKLEKEVKelEELKEEIE 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 265 KVQAEEEILERNLTNCEKENKRLQERCGLYKSELEILKEKLRQLKEENNNGKEKLRImavknSEVMAQLTESRQSILKLE 344
Cdd:PRK03918 242 ELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKL-----SEFYEEYLDELREIEKRL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 345 SELENKDEILRDKfslMNENRELKVRVAAQNERLDLCQQEIESSRVELRSLEKIisqLPLKRELFGFKSYLSKYQMSSFS 424
Cdd:PRK03918 317 SRLEEEINGIEER---IKELEEKEERLEELKKKLKELEKRLEELEERHELYEEA---KAKKEELERLKKRLTGLTPEKLE 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 425 NKEDRCIGCCEANKLVISELRIKLAIKEAEIQKLHANLTANQ-------LSQSLITCNDSQESSKLSSLETEPVKLGGHQ 497
Cdd:PRK03918 391 KELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKkakgkcpVCGRELTEEHRKELLEEYTAELKRIEKELKE 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 498 VAESVKDQNQHTMNKQYEKERQRLVTGIEELRTKLIQIEAENSDLKVnmahrtsqfqliqEELLEKASNSSKLESEMTKK 577
Cdd:PRK03918 471 IEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNL-------------EELEKKAEEYEKLKEKLIKL 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 578 CSQLLTLEKQLEEKIVAYSSIAA---KNAELEQELMEKNEKIRSLETNINTEHEKICLAFEKAKKIHLEQhKEMEKQIER 654
Cdd:PRK03918 538 KGEIKSLKKELEKLEELKKKLAElekKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLEL-KDAEKELER 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 655 LEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGE-MKKENMKKDEALKALQNQVSEETIKVRQLDSAL 733
Cdd:PRK03918 617 EEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEeLREEYLELSRELAGLRAELEELEKRREEIKKTL 696
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 1034558170 734 EICKEElvlhLNQLEGNKEKFEKqLKKKSEEVYCLQKELK-----IKNHSLQETSE 784
Cdd:PRK03918 697 EKLKEE----LEEREKAKKELEK-LEKALERVEELREKVKkykalLKERALSKVGE 747
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
808-1108 |
4.49e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.95 E-value: 4.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 808 GELEDTQTKLEKQVSKLEqELQKQRESSAEKLRKMEEKCESAAHE-ADLKR------------QKVIELTGTARQVKIEM 874
Cdd:PRK04863 355 ADLEELEERLEEQNEVVE-EADEQQEENEARAEAAEEEVDELKSQlADYQQaldvqqtraiqyQQAVQALERAKQLCGLP 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 875 D-------QYKEELSKMEKEIMHLKRDGENKamhLSQLDMILDQTKTELEKKTNAVKELEKLQ-HSTETELTEALQKREV 946
Cdd:PRK04863 434 DltadnaeDWLEEFQAKEQEATEELLSLEQK---LSVAQAAHSQFEQAYQLVRKIAGEVSRSEaWDVARELLRRLREQRH 510
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 947 LETELQ---NAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQ 1023
Cdd:PRK04863 511 LAEQLQqlrMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQ 590
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1024 RAAQVTHLDMTirehrgemEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIE 1103
Cdd:PRK04863 591 LQARIQRLAAR--------APAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIE 662
|
....*
gi 1034558170 1104 RTQQR 1108
Cdd:PRK04863 663 RLSQP 667
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
222-1230 |
5.49e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 44.65 E-value: 5.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 222 VDLLEQTKQGKRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKVQAEEEILERNLTNCEKENKRLQERcglyKSELEIL 301
Cdd:TIGR00606 185 IKALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNR----LKEIEHN 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 302 KEKLRQLKEENNNGKEKLRIMAVKNSEVMaqltesrqsiLKLESELENKDEILRDkfslMNENRELKVRvaAQNERLDLC 381
Cdd:TIGR00606 261 LSKIMKLDNEIKALKSRKKQMEKDNSELE----------LKMEKVFQGTDEQLND----LYHNHQRTVR--EKERELVDC 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 382 QQEIESSRVELRSLEKIISQLPLKRELFGFKSYLSKYQMSSFSNKEDRCIGCCEANKL---VISELRIKLAIKEAEIQKL 458
Cdd:TIGR00606 325 QRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFergPFSERQIKNFHTLVIERQE 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 459 HANLTANQLsqslitCNDSQEssklssletepvklgghqvaesvkdqNQHTMNKQYEKERQRLVTGIEELRTKLIQIEAE 538
Cdd:TIGR00606 405 DEAKTAAQL------CADLQS--------------------------KERLKQEQADEIRDEKKGLGRTIELKKEILEKK 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 539 NSDLKvNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKivaysSIAAKNAELEQELMEKNEKIRS 618
Cdd:TIGR00606 453 QEELK-FVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVK-----SLQNEKADLDRKLRKLDQEMEQ 526
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 619 LETNINTEHEKICLAFEKAKKihLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLteSK 698
Cdd:TIGR00606 527 LNHHTTTRTQMEMLTKDKMDK--DEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKEL--AS 602
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 699 GEMKKENMKKDEALKALQNQVSEETIkvrqldsaLEICKEElvlhlnQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHS 778
Cdd:TIGR00606 603 LEQNKNHINNELESKEEQLSSYEDKL--------FDVCGSQ------DEESDLERLKEEIEKSSKQRAMLAGATAVYSQF 668
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 779 LQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKcesaAHEADLKRQ 858
Cdd:TIGR00606 669 ITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGR----QSIIDLKEK 744
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 859 KVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDmILDQTKTELEKKTNAVKELEKLQHSTETELT 938
Cdd:TIGR00606 745 EIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVT-IMERFQMELKDVERKIAQQAAKLQGSDLDRT 823
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 939 EALQKREVLETelQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERN 1018
Cdd:TIGR00606 824 VQQVNQEKQEK--QHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLI 901
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1019 WELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLRE-KEFIMLQNEQEISQ 1097
Cdd:TIGR00606 902 REIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDgKDDYLKQKETELNT 981
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1098 LKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQElrLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKq 1177
Cdd:TIGR00606 982 VNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDN--LTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQK- 1058
|
970 980 990 1000 1010
....*....|....*....|....*....|....*....|....*....|...
gi 1034558170 1178 LSKEKDAHGNHLAEELGASKVREahlEARMQAEIKKLSAEVESLKEAYHMEMI 1230
Cdd:TIGR00606 1059 LEENIDLIKRNHVLALGRQKGYE---KEIKHFKKELREPQFRDAEEKYREMMI 1108
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
973-1144 |
5.77e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.37 E-value: 5.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 973 QKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQraaqvthldmtIREHRGEMEQKIIKLEGT 1052
Cdd:COG1579 6 LRALLDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELED-----------LEKEIKRLELEIEEVEAR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1053 LEKSELELKEC--NKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEA 1130
Cdd:COG1579 75 IKKYEEQLGNVrnNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAEL 154
|
170
....*....|....
gi 1034558170 1131 IDLGQELRLTREQV 1144
Cdd:COG1579 155 EAELEELEAEREEL 168
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
148-396 |
6.29e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.26 E-value: 6.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 148 LTQSRAKVSMLESAQQQAAS-VPILEEQIINLEAEVSAQDKVLREAENKlEQSQKMVIEKEQSLQESKEECIKLK--VDL 224
Cdd:PRK02224 470 IEEDRERVEELEAELEDLEEeVEEVEERLERAEDLVEAEDRIERLEERR-EDLEELIAERRETIEEKRERAEELRerAAE 548
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 225 LEQTKQGKR--AERQRNEALYNAEELsKAFQQYKKKVAEKLEKVQAEEEILERnLTNCEkenkrlqercglykSELEILK 302
Cdd:PRK02224 549 LEAEAEEKReaAAEAEEEAEEAREEV-AELNSKLAELKERIESLERIRTLLAA-IADAE--------------DEIERLR 612
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 303 EKLRQLKEENNNGKEKLRIMAVKNSEVMAQLTESRQSILK-----LESELENKDEILRDkfsLMNENRELKVRVAAQNER 377
Cdd:PRK02224 613 EKREALAELNDERRERLAEKRERKRELEAEFDEARIEEARedkerAEEYLEQVEEKLDE---LREERDDLQAEIGAVENE 689
|
250
....*....|....*....
gi 1034558170 378 LDlcqqEIESSRVELRSLE 396
Cdd:PRK02224 690 LE----ELEELRERREALE 704
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
988-1304 |
6.57e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.56 E-value: 6.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 988 DLTAELREckmEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTI---REHRGEMeQKIIKLEGTLEKSELELKECN 1064
Cdd:COG3096 285 ERALELRR---ELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYqaaSDHLNLV-QTALRQQEKIERYQEDLEELT 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1065 KQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEmesvmkeqEQYIATQYKEAIdlgQELRLTREQV 1144
Cdd:COG3096 361 ERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDV--------QQTRAIQYQQAV---QALEKARALC 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1145 QNSHTELAEARHQQVQAQREIERLSSELEDMKQ-LSKEKDAHGNH-----LAEELGASKVRE-AHLEARMQ----AEIKK 1213
Cdd:COG3096 430 GLPDLTPENAEDYLAAFRAKEQQATEEVLELEQkLSVADAARRQFekayeLVCKIAGEVERSqAWQTARELlrryRSQQA 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1214 LSAEVESLKEAYH-MEMISHQENHAKWKISADSQKSSVQ------------QLNEQLEKAKLELEEAQDTVSNLHQ---Q 1277
Cdd:COG3096 510 LAQRLQQLRAQLAeLEQRLRQQQNAERLLEEFCQRIGQQldaaeeleellaELEAQLEELEEQAAEAVEQRSELRQqleQ 589
|
330 340
....*....|....*....|....*..
gi 1034558170 1278 VQDRNEVIEAANEALLTKESELTRLQA 1304
Cdd:COG3096 590 LRARIKELAARAPAWLAAQDALERLRE 616
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1041-1166 |
6.96e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 44.43 E-value: 6.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1041 EMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEfimlqnEQEISQLKKEIERTQQRMKEMesvmkEQE 1120
Cdd:PRK00409 531 ELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEA------QQAIKEAKKEADEIIKELRQL-----QKG 599
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1034558170 1121 QYIATQYKEAIDlgqelrlTREQVQNSHTELAEARHQQVQAQREIE 1166
Cdd:PRK00409 600 GYASVKAHELIE-------ARKRLNKANEKKEKKKKKQKEKQEELK 638
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
809-1081 |
7.20e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.56 E-value: 7.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 809 ELEDTQTK---LEKQVSKLEQELQKQREssaeKLRKMEEKC---------------ESAAHEADLKRQKVIEltgtARQV 870
Cdd:PRK04863 838 ELRQLNRRrveLERALADHESQEQQQRS----QLEQAKEGLsalnrllprlnlladETLADRVEEIREQLDE----AEEA 909
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 871 KIEMDQYKEELSKMEKEIMHLKRDGENKAmHLSQLDMILDQTKTELEKKTNAVKELEKLQH-----------STETELTE 939
Cdd:PRK04863 910 KRFVQQHGNALAQLEPIVSVLQSDPEQFE-QLKQDYQQAQQTQRDAKQQAFALTEVVQRRAhfsyedaaemlAKNSDLNE 988
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 940 ALQKR-EVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDkkqellEMDQALKERN 1018
Cdd:PRK04863 989 KLRQRlEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADS------GAEERARARR 1062
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1034558170 1019 WELKQRaaqvthldmtIREHRGEMEQkiikLEGTLEKSELELKECNKQIESLNDKLQNAKEQL 1081
Cdd:PRK04863 1063 DELHAR----------LSANRSRRNQ----LEKQLTFCEAEMDNLTKKLRKLERDYHEMREQV 1111
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
482-691 |
8.29e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 44.12 E-value: 8.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 482 KLSSLETEPVKLGGHQVAESVKDQNQHTMNKQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELL 561
Cdd:PLN02939 171 KINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELI 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 562 EKASNSSKLeSEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQE-LMEKNEKIRSLETNINTEHEKICLAfekakki 640
Cdd:PLN02939 251 EVAETEERV-FKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDcWWEKVENLQDLLDRATNQVEKAALV------- 322
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1034558170 641 hLEQHKEMEKQIERLEAQLEKKDqQFKEQEKTMSMLQQDIICKQHHLESLD 691
Cdd:PLN02939 323 -LDQNQDLRDKVDKLEASLKEAN-VSKFSSYKVELLQQKLKLLEERLQASD 371
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
988-1311 |
9.67e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.79 E-value: 9.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 988 DLTAELRECKMEIEDKK---------QELLE--------------------MDQALKERNwEL-----KQRAAQVTHLDM 1033
Cdd:PRK04863 234 DMEAALRENRMTLEAIRvtqsdrdlfKHLITestnyvaadymrhanerrvhLEEALELRR-ELytsrrQLAAEQYRLVEM 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1034 -----TIREHRGEMEQKI-------------IKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEI 1095
Cdd:PRK04863 313 arelaELNEAESDLEQDYqaasdhlnlvqtaLRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEV 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1096 SQLKKEIERTQQRMkemesvmkEQEQYIATQYKEAIdlgQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDM 1175
Cdd:PRK04863 393 DELKSQLADYQQAL--------DVQQTRAIQYQQAV---QALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSL 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1176 KQ-LSKEKDAHGNH-----LAEELGASKVR-EAHLEA----RMQAEIKKLSAEVESLKEAYH-MEMISHQENHAKwKISA 1243
Cdd:PRK04863 462 EQkLSVAQAAHSQFeqayqLVRKIAGEVSRsEAWDVArellRRLREQRHLAEQLQQLRMRLSeLEQRLRQQQRAE-RLLA 540
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1034558170 1244 DSQKSSVQQLNEQlekaklelEEAQDTVSNLHQQVQDRNEVIEAANEALLTKESELTRLQAKISGHEK 1311
Cdd:PRK04863 541 EFCKRLGKNLDDE--------DELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAA 600
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
810-1200 |
1.05e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.79 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 810 LEDTQTKLEKQV---SKLEQEL----------------QKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQV 870
Cdd:PRK04863 309 LVEMARELAELNeaeSDLEQDYqaasdhlnlvqtalrqQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAA 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 871 KIEMDQYKEELSKMEKEIMHLKRdgenKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETE 950
Cdd:PRK04863 389 EEEVDELKSQLADYQQALDVQQT----RAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQK 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 951 LQNAhgelKSTLRQLQELRDVLQKA--QLSLEEKYTTIKDLTAELRECKMEIEDKKQelLEMDQALKERNWELKQRAAQV 1028
Cdd:PRK04863 465 LSVA----QAAHSQFEQAYQLVRKIagEVSRSEAWDVARELLRRLREQRHLAEQLQQ--LRMRLSELEQRLRQQQRAERL 538
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1029 thldmtirehRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKeieRTQQR 1108
Cdd:PRK04863 539 ----------LAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAA---RAPAW 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1109 MKEMESVMKEQEQYIATQyKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSseledmkQLSKEKDAHGNH 1188
Cdd:PRK04863 606 LAAQDALARLREQSGEEF-EDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIERLS-------QPGGSEDPRLNA 677
|
410
....*....|..
gi 1034558170 1189 LAEELGASKVRE 1200
Cdd:PRK04863 678 LAERFGGVLLSE 689
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
161-355 |
1.12e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.98 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 161 AQQQAASVPILEEQIINLEAEVSAQDKVLREAENKLEQSQKMVIEKEQSLQESKEECIKLKVDLLEQTKQGKRAERQRNE 240
Cdd:PTZ00121 1579 ALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEE 1658
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 241 ALYNAEELSKAFQQYKKKvAEKLEKVQAEEEILERNLTNCEKENKRLQErcgLYKSELEILK--EKLRQLKEENNNGKEK 318
Cdd:PTZ00121 1659 NKIKAAEEAKKAEEDKKK-AEEAKKAEEDEKKAAEALKKEAEEAKKAEE---LKKKEAEEKKkaEELKKAEEENKIKAEE 1734
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1034558170 319 LRIMA---VKNSEVMAQLTESRQSILKLESELENKDEILR 355
Cdd:PTZ00121 1735 AKKEAeedKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIR 1774
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
513-1008 |
1.20e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 43.66 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 513 QYEKERQRLVTGIEELRTKLIQIEAENSDLKvnmahrtSQFQLIQEELLEKASNSSKLESEMTkkcsqllTLEKQLEEKi 592
Cdd:pfam10174 293 QLKQELSKKESELLALQTKLETLTNQNSDCK-------QHIEVLKESLTAKEQRAAILQTEVD-------ALRLRLEEK- 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 593 vayssiaaknaelEQELMEKNEKIRSLEtninteHEKICLAFE----------KAKKIHLEQhkemeKQIERLEAQLEKK 662
Cdd:pfam10174 358 -------------ESFLNKKTKQLQDLT------EEKSTLAGEirdlkdmldvKERKINVLQ-----KKIENLQEQLRDK 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 663 DQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTEskgemkkenmkKDEALKALQNQVSEETIKVRqldsaleickEELvl 742
Cdd:pfam10174 414 DKQLAGLKERVKSLQTDSSNTDTALTTLEEALSE-----------KERIIERLKEQREREDRERL----------EEL-- 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 743 hlnqlegnkEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVS 822
Cdd:pfam10174 471 ---------ESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLK 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 823 KLEQ--ELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAM 900
Cdd:pfam10174 542 KAHNaeEAVRTNPEINDRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAELESLTLRQMKEQNKKVA 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 901 HLsqldmildQTKTELEKKTNAvkELEKLQHSTETELTEALQKREVLETelqnaHGELKSTLRQLQELRDVLQKAQLSLE 980
Cdd:pfam10174 622 NI--------KHGQQEMKKKGA--QLLEEARRREDNLADNSQQLQLEEL-----MGALEKTRQELDATKARLSSTQQSLA 686
|
490 500
....*....|....*....|....*...
gi 1034558170 981 EKYTTIKDLTAELRECKMEIEDKKQELL 1008
Cdd:pfam10174 687 EKDGHLTNLRAERRKQLEEILEMKQEAL 714
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
497-680 |
1.48e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 1.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 497 QVAESVKDQNQHTMNKQYEKERQRLVTGIEELRTKLIQIEAENSDLKV--NMAHRTSQFQLIQEELLEKASNSSKLESEM 574
Cdd:COG3206 156 ALAEAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQknGLVDLSEEAKLLLQQLSELESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 575 TKKCSQLLTLEKQLEEKIVA---------YSSIAAKNAELEQELMEK--------------NEKIRSLETNINTEHEKIC 631
Cdd:COG3206 236 AEAEARLAALRAQLGSGPDAlpellqspvIQQLRAQLAELEAELAELsarytpnhpdvialRAQIAALRAQLQQEAQRIL 315
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1034558170 632 LAFEKAKKIHLEQHKEMEKQIERLEAQLekkdQQFKEQEKTMSMLQQDI 680
Cdd:COG3206 316 ASLEAELEALQAREASLQAQLAQLEARL----AELPELEAELRRLEREV 360
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
189-887 |
1.65e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 43.24 E-value: 1.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 189 LREAENKLEQSQ--KMVIEKEQSLQESKEECIKLKVDLLEQTKQGKRAERQRNEAlyNAEELSKAFQQ---YKKKVAEKL 263
Cdd:pfam01576 358 LEELTEQLEQAKrnKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEG--QLQELQARLSEserQRAELAEKL 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 264 EKVQAEEEILERNLTNCEKENKRLQERCGLYKSEL----EILKE----------KLRQLKEENNNGKEKLRIMAVKNSEV 329
Cdd:pfam01576 436 SKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLqdtqELLQEetrqklnlstRLRQLEDERNSLQEQLEEEEEAKRNV 515
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 330 MAQLTESRQSIL----KLESELENKDEILRDKFSLMNENRELKVRV---AAQNERLD----LCQQEIESSRVELRSLEKI 398
Cdd:pfam01576 516 ERQLSTLQAQLSdmkkKLEEDAGTLEALEEGKKRLQRELEALTQQLeekAAAYDKLEktknRLQQELDDLLVDLDHQRQL 595
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 399 ISQLPLKRElfGFKSYLSKYQMSSFSNKEDRCIGCCEANKLVISELRIKLAIKEAEIQKLHANLTANQLSQSLITCNDSQ 478
Cdd:pfam01576 596 VSNLEKKQK--KFDQMLAEEKAISARYAEERDRAEAEAREKETRALSLARALEEALEAKEELERTNKQLRAEMEDLVSSK 673
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 479 ESSKLSSLETEPVKLGGHQVAESVKDQnqhtmnkqyekerqrlvtgIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQE 558
Cdd:pfam01576 674 DDVGKNVHELERSKRALEQQVEEMKTQ-------------------LEELEDELQATEDAKLRLEVNMQALKAQFERDLQ 734
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 559 ELLEKASNSSKLESEmtkkcsQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEknekirsLETNINTEHEKICLAFEKAK 638
Cdd:pfam01576 735 ARDEQGEEKRRQLVK------QVRELEAELEDERKQRAQAVAAKKKLELDLKE-------LEAQIDAANKGREEAVKQLK 801
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 639 KIHlEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEmkkenmkKDEALKALQNQ 718
Cdd:pfam01576 802 KLQ-AQMKDLQRELEEARASRDEILAQSKESEKKLKNLEAELLQLQEDLAASERARRQAQQE-------RDELADEIASG 873
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 719 VSEETI---KVRQLDSALEICKEElvlhLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQ--ETSEQNVILQHTL 793
Cdd:pfam01576 874 ASGKSAlqdEKRRLEARIAQLEEE----LEEEQSNTELLNDRLRKSTLQVEQLTTELAAERSTSQksESARQQLERQNKE 949
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 794 QQQQQMLQQETIRnGELEDTQTKLEKQVSKLEQELQ---KQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQV 870
Cdd:pfam01576 950 LKAKLQEMEGTVK-SKFKSSIAALEAKIAQLEEQLEqesRERQAANKLVRRTEKKLKEVLLQVEDERRHADQYKDQAEKG 1028
|
730
....*....|....*..
gi 1034558170 871 KIEMDQYKEELSKMEKE 887
Cdd:pfam01576 1029 NSRMKQLKRQLEEAEEE 1045
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
958-1191 |
1.88e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 42.69 E-value: 1.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 958 LKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQ----ELLEMDQALKErnwELKQRAAQVTHLDM 1033
Cdd:PHA02562 172 NKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQnkydELVEEAKTIKA---EIEELTDELLNLVM 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1034 TIR---EHRGEMEQKIIKLEGTLEKSELELK---------ECNKQIESLNDKLQNAKEQLREKEfimlqneQEISQLKKE 1101
Cdd:PHA02562 249 DIEdpsAALNKLNTAAAKIKSKIEQFQKVIKmyekggvcpTCTQQISEGPDRITKIKDKLKELQ-------HSLEKLDTA 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1102 IERTQQRMKEmesvmkeqeqyIATQYKEAIDLGQELRLTREQVQNShtelaeaRHQQVQAQREIERLSSEL----EDMKQ 1177
Cdd:PHA02562 322 IDELEEIMDE-----------FNEQSKKLLELKNKISTNKQSLITL-------VDKAKKVKAAIEELQAEFvdnaEELAK 383
|
250
....*....|....
gi 1034558170 1178 LSKEKDAHGNHLAE 1191
Cdd:PHA02562 384 LQDELDKIVKTKSE 397
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1064-1182 |
1.94e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.89 E-value: 1.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1064 NKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDlgQELRLTREQ 1143
Cdd:PRK00409 519 NELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEAD--EIIKELRQL 596
|
90 100 110
....*....|....*....|....*....|....*....
gi 1034558170 1144 VQNSHTELAEarHQQVQAQREIERLSSELEDMKQLSKEK 1182
Cdd:PRK00409 597 QKGGYASVKA--HELIEARKRLNKANEKKEKKKKKQKEK 633
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
806-1016 |
1.97e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 1.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 806 RNGELEDTQTKLEKQVSKLEQELQkQRESSAEKLRKmEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKME 885
Cdd:COG3206 169 RREEARKALEFLEEQLPELRKELE-EAEAALEEFRQ-KNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALR 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 886 KEImhlkRDGENKAMHLSQlDMILDQTKTELEKKTNAVKELEKL---QHSTETELTEALQK-REVLETELQNAHGELKST 961
Cdd:COG3206 247 AQL----GSGPDALPELLQ-SPVIQQLRAQLAELEAELAELSARytpNHPDVIALRAQIAAlRAQLQQEAQRILASLEAE 321
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1034558170 962 LRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKE 1016
Cdd:COG3206 322 LEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEE 376
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
809-1336 |
1.97e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 42.82 E-value: 1.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 809 ELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEI 888
Cdd:pfam07111 141 ELEEIQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLNSLETKRAGEAKQLAEAQKEAELLRKQLSKTQEELEAQVTLV 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 889 MHLKR---------------DGENKAM-----HLSQLDMILDQTKTELEKKTNAVKELEKLQhstETELTEALQKREVLE 948
Cdd:pfam07111 221 ESLRKyvgeqvppevhsqtwELERQELldtmqHLQEDRADLQATVELLQVRVQSLTHMLALQ---EEELTRKIQPSDSLE 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 949 TELQNAHGELKSTLRQLQELRDVLQKAQ-LSLEEKYTTIKDLTAELREckmEIEDKKQELLEMDQALKERNWELKQRAAQ 1027
Cdd:pfam07111 298 PEFPKKCRSLLNRWREKVFALMVQLKAQdLEHRDSVKQLRGQVAELQE---QVTSQSQEQAILQRALQDKAAEVEVERMS 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1028 VTHLDMTI---REHRGEMEQKIIKLE--------------GTLEKSELELKECNKQIESLNDKLQNAKEQ------LREK 1084
Cdd:pfam07111 375 AKGLQMELsraQEARRRQQQQTASAEeqlkfvvnamsstqIWLETTMTRVEQAVARIPSLSNRLSYAVRKvhtikgLMAR 454
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1085 EFIMLQNEQEISQLKKEIERTQQRMK-EMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQ--- 1160
Cdd:pfam07111 455 KVALAQLRQESCPPPPPAPPVDADLSlELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEAERQQLSEVAQQLEQelq 534
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1161 -AQREIERLSSELEDMKQLSKEKDAHGNHLAEELG--------ASKVREAHLEARMQAEIKKLSAEVESLKEAYHMEMIS 1231
Cdd:pfam07111 535 rAQESLASVGQQLEVARQGQQESTEEAASLRQELTqqqeiygqALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVS 614
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1232 HQENHAKwkisADSQKSSVQQLNEQLEKAKLEleEAQDTVSNLHQQVQDRNEVIEAANEALLTKESELTRLQAKISGHEK 1311
Cdd:pfam07111 615 LRQIQHR----ATQEKERNQELRRLQDEARKE--EGQRLARRVQELERDKNLMLATLQQEGLLSRYKQQRLLAVLPSGLD 688
|
570 580
....*....|....*....|....*
gi 1034558170 1312 AEDIKFLPAPFTSPTEIMPDVQDPK 1336
Cdd:pfam07111 689 KKSVVSSPRPECSASAPIPAAVPTR 713
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
232-380 |
2.31e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 42.39 E-value: 2.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 232 KRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKVQAEEEILERNltncekENKRLQERCGLYKSELEILKEKLRQLKEE 311
Cdd:PRK12705 33 KEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARRERE------ELQREEERLVQKEEQLDARAEKLDNLENQ 106
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034558170 312 NNNGKEKLRIMAVKNSEVMAQLTESRQSILKLESElENKDEILRDKFSLMNEnrELKVRVAAQNERLDL 380
Cdd:PRK12705 107 LEEREKALSARELELEELEKQLDNELYRVAGLTPE-QARKLLLKLLDAELEE--EKAQRVKKIEEEADL 172
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
768-982 |
2.38e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 2.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 768 LQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCE 847
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLR 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 848 SAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENkamhlsqldmiLDQTKTELEKKTNAVKELE 927
Cdd:COG4942 112 ALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAE-----------LAALRAELEAERAELEALL 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1034558170 928 KLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEK 982
Cdd:COG4942 181 AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
867-1017 |
2.69e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 42.38 E-value: 2.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 867 ARqVKIEMDQYKEELSKMEKEIMHLKRDgenkamhlsQLDMILDQTKTELEKKTNAVKELEKLQHSTEtELTEALQKREV 946
Cdd:COG0542 400 AR-VRMEIDSKPEELDELERRLEQLEIE---------KEALKKEQDEASFERLAELRDELAELEEELE-ALKARWEAEKE 468
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 947 LETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIK-DLTAElreckmEI----------------EDKKQELLE 1009
Cdd:COG0542 469 LIEEIQELKEELEQRYGKIPELEKELAELEEELAELAPLLReEVTEE------DIaevvsrwtgipvgkllEGEREKLLN 542
|
....*...
gi 1034558170 1010 MDQALKER 1017
Cdd:COG0542 543 LEEELHER 550
|
|
| WEMBL |
pfam05701 |
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ... |
875-1291 |
2.75e-03 |
|
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".
Pssm-ID: 461718 [Multi-domain] Cd Length: 562 Bit Score: 42.32 E-value: 2.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 875 DQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEK-KTNAVK-ELEKLQHSTETELTE----------ALQ 942
Cdd:pfam05701 38 KLVELELEKVQEEIPEYKKQSEAAEAAKAQVLEELESTKRLIEElKLNLERaQTEEAQAKQDSELAKlrveemeqgiADE 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 943 KREVLETELQNAHGELKSTLRQLQELR---DVLQKAQLSL-EEKYTTIK---DLTAELRECKMEIEDKKQELLEMDQALK 1015
Cdd:pfam05701 118 ASVAAKAQLEVAKARHAAAVAELKSVKeelESLRKEYASLvSERDIAIKraeEAVSASKEIEKTVEELTIELIATKESLE 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1016 ernwelkqrAAQVTHLDMTIREHRGEM--EQKIIKLEGTLEKSELELKECNKQIESLND---KLQNAKEqlrekefiMLQ 1090
Cdd:pfam05701 198 ---------SAHAAHLEAEEHRIGAALarEQDKLNWEKELKQAEEELQRLNQQLLSAKDlksKLETASA--------LLL 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1091 NeqeisqLKKEI-ERTQQRMKEmESVMKEQEQYIATQYKEAIDLGQ-ELRLTREQVQNSHTELAEARHQQVQAQREIERL 1168
Cdd:pfam05701 261 D------LKAELaAYMESKLKE-EADGEGNEKKTSTSIQAALASAKkELEEVKANIEKAKDEVNCLRVAAASLRSELEKE 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1169 SSELEDMKQLSKEKDAHGNHLAEELGASKVREAHLEARMQAEIKKLSAEVESLKEAyhmemisHQEnhakwkisADSQKS 1248
Cdd:pfam05701 334 KAELASLRQREGMASIAVSSLEAELNRTKSEIALVQAKEKEAREKMVELPKQLQQA-------AQE--------AEEAKS 398
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 1034558170 1249 SVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEA 1291
Cdd:pfam05701 399 LAQAAREELRKAKEEAEQAKAAASTVESRLEAVLKEIEAAKAS 441
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
902-1289 |
2.90e-03 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 42.13 E-value: 2.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 902 LSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQK-REVLETELQNAH-------------GELKSTLRQLQE 967
Cdd:PRK04778 107 INEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLyRELRKSLLANRFsfgpaldelekqlENLEEEFSQFVE 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 968 L---------RDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQraaqvTHLDMTIREH 1038
Cdd:PRK04778 187 LtesgdyveaREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDH-----LDIEKEIQDL 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1039 RGEMEQKIIKLEgtleksELELKECNKQIESLNDKLQNAKEQLrEKEFIMlqneqeisqlKKEIERTQQRMKEMESVMKE 1118
Cdd:PRK04778 262 KEQIDENLALLE------ELDLDEAEEKNEEIQERIDQLYDIL-EREVKA----------RKYVEKNSDTLPDFLEHAKE 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1119 QEQyiatqykeaiDLGQELRLTREQVQNSHTELAEARhqqvQAQREIERLSSELEDMKQLSKEKDAHGNHLAEELGASkv 1198
Cdd:PRK04778 325 QNK----------ELKEEIDRVKQSYTLNESELESVR----QLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEI-- 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1199 rEAHLEArMQAEIKKLSAEVESLKEAyhmEMISHQE-NHAKWKISADSQK---------------------SSVQQLNEQ 1256
Cdd:PRK04778 389 -LKQLEE-IEKEQEKLSEMLQGLRKD---ELEAREKlERYRNKLHEIKRYleksnlpglpedylemffevsDEIEALAEE 463
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 1034558170 1257 LEKAKL-------ELEEAQDTVSNLHQQVqdrNEVIEAAN 1289
Cdd:PRK04778 464 LEEKPInmeavnrLLEEATEDVETLEEET---EELVENAT 500
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
997-1305 |
3.02e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 42.37 E-value: 3.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 997 KMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQK---IIKLEGTLEK----SELELKECNKQIES 1069
Cdd:COG5022 767 ALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYlacIIKLQKTIKRekklRETEEVEFSLKAEV 846
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1070 LNDKLQNAKEqlREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQY---KEAIDLGQEL--------- 1137
Cdd:COG5022 847 LIQKFGRSLK--AKKRFSLLKKETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLeleSEIIELKKSLssdlienle 924
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1138 ----RLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLAEELGASKVREAHLEARMQA---- 1209
Cdd:COG5022 925 fkteLIARLKKLLNNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKElael 1004
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1210 --EIKKLSAEVESLKEAYHmeMISHQENHAKWKISADSQKSSVQQLNEQLEKAKLELEEAQDTVSNLHQQvQDRNEVIEA 1287
Cdd:COG5022 1005 skQYGALQESTKQLKELPV--EVAELQSASKIISSESTELSILKPLQKLKGLLLLENNQLQARYKALKLR-RENSLLDDK 1081
|
330
....*....|....*...
gi 1034558170 1288 ANEALLTKESELTRLQAK 1305
Cdd:COG5022 1082 QLYQLESTENLLKTINVK 1099
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
574-723 |
3.19e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.07 E-value: 3.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 574 MTKKCSQLLTLEKQLEEKIVAYSSIAAKNA--ELEQELMEKNEKIRSletnintehekiclAFEKAKKIHLEQHKEMEKQ 651
Cdd:PRK12704 25 RKKIAEAKIKEAEEEAKRILEEAKKEAEAIkkEALLEAKEEIHKLRN--------------EFEKELRERRNELQKLEKR 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1034558170 652 IERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKE-----NMKKDEALKALQNQVSEET 723
Cdd:PRK12704 91 LLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQElerisGLTAEEAKEILLEKVEEEA 167
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
85-280 |
3.64e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 3.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 85 CKISGSSTDFQKKPRDKMFSSS----------APVDQEIKSLREKLNKLRQQNACL------VTQNHSLMTKFESIHFEL 148
Cdd:COG4913 581 GQVKGNGTRHEKDDRRRIRSRYvlgfdnraklAALEAELAELEEELAEAEERLEALeaeldaLQERREALQRLAEYSWDE 660
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 149 TQSRAKVSMLESAQQQ----AASVPILEEqiinLEAEVSAQDKVLREAENKLEQSQKMVIEKEQSLQESKEECIKLKVDL 224
Cdd:COG4913 661 IDVASAEREIAELEAElerlDASSDDLAA----LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRL 736
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1034558170 225 LEQTKQGKRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKVQAEEEILERNLTNC 280
Cdd:COG4913 737 EAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERA 792
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
582-1088 |
3.69e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 41.96 E-value: 3.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 582 LTLEKQLEEKIVAYSSIAAKNAELEQ--ELMEKNEKIRS---LETNINTEHEKICLAFEKAKKIHLEQHKEmEKQIERLE 656
Cdd:TIGR01612 1226 LFLEKIDEEKKKSEHMIKAMEAYIEDldEIKEKSPEIENemgIEMDIKAEMETFNISHDDDKDHHIISKKH-DENISDIR 1304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 657 AQLEKKDQQFKEQEKTMSM---LQQDIICKQHHLESLDRLLTESKGEMkkeNMKKDEALKALQNQVSEETIKVRQLDSAL 733
Cdd:TIGR01612 1305 EKSLKIIEDFSEESDINDIkkeLQKNLLDAQKHNSDINLYLNEIANIY---NILKLNKIKKIIDEVKEYTKEIEENNKNI 1381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 734 --EICKEELVLHL----NQLEGNKEKFEKQLKKKSEEvYCLQKELKIKNHSLQEtsEQNVILQHTLQQQQQMLQQETIRN 807
Cdd:TIGR01612 1382 kdELDKSEKLIKKikddINLEECKSKIESTLDDKDID-ECIKKIKELKNHILSE--ESNIDTYFKNADENNENVLLLFKN 1458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 808 GELEDTQTKLEKQVSKleQELQKQRESSAEKLRKMEEKCESAAHEADlKRQKVIEltgtarQVKIEMDQYKEELS----- 882
Cdd:TIGR01612 1459 IEMADNKSQHILKIKK--DNATNDHDFNINELKEHIDKSKGCKDEAD-KNAKAIE------KNKELFEQYKKDVTellnk 1529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 883 ----KMEKEIMHLKRDGENKAMHLSQLDmilDQTKTELEKKTNAVKELEKLQHSTETE--------------------LT 938
Cdd:TIGR01612 1530 ysalAIKNKFAKTKKDSEIIIKEIKDAH---KKFILEAEKSEQKIKEIKKEKFRIEDDaakndksnkaaidiqlslenFE 1606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 939 EALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLE-EKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKER 1017
Cdd:TIGR01612 1607 NKFLKISDIKKKINDCLKETESIEKKISSFSIDSQDTELKENgDNLNSLQEFLESLKDQKKNIEDKKKELDELDSEIEKI 1686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1018 NWELKQRAAQ-----VTHLDMTIREHRGEMEQKIIKLEGTLEK-------SELELKECNKQIESLNDKLQNAKEQLREKE 1085
Cdd:TIGR01612 1687 EIDVDQHKKNyeigiIEKIKEIAIANKEEIESIKELIEPTIENlissfntNDLEGIDPNEKLEEYNTEIGDIYEEFIELY 1766
|
...
gi 1034558170 1086 FIM 1088
Cdd:TIGR01612 1767 NII 1769
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
880-1029 |
4.02e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.68 E-value: 4.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 880 ELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHG--E 957
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNnkE 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1034558170 958 LKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVT 1029
Cdd:COG1579 91 YEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELE 162
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
939-1222 |
4.04e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 41.70 E-value: 4.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 939 EALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERN 1018
Cdd:pfam01576 5 EEMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEILHELESRL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1019 WELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESL----------NDKLQNAKEQLREK---- 1084
Cdd:pfam01576 85 EEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLeedillledqNSKLSKERKLLEERisef 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1085 EFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQRE 1164
Cdd:pfam01576 165 TSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEE 244
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034558170 1165 IERLSSELED-------MKQLSKEKDAHGNHLAEELGASKVREAHLEARMqaeiKKLSAEVESLK 1222
Cdd:pfam01576 245 LQAALARLEEetaqknnALKKIRELEAQISELQEDLESERAARNKAEKQR----RDLGEELEALK 305
|
|
| ATG17_like |
pfam04108 |
Autophagy protein ATG17-like domain; This domain is found in the autophagy-related proteins ... |
901-1224 |
4.91e-03 |
|
Autophagy protein ATG17-like domain; This domain is found in the autophagy-related proteins ATG17 and ATG11, conserved across eukaryotes. ATG17 forms a complex with ATG29 and ATG31, critical for both PAS (preautophagosomal structure) formation and autophagy. Together with ATG13, it is required for ATG1 kinase activation. ATG11 is a scaffold protein required for the cytoplasm-to-vacuole targeting (Cvt) pathway during starvation and to recruit ATG proteins to the pre-autophagosome. It is also required for ATG1 kinase activation. In many eukaryotes, ATG11 (the orthologue in mammals is RB1-inducible coiled-coil protein 1 (RB1CC1) and in S. pombe is Taz1-interacting factor 1 (taf1)) is essential for bulk autophagy, except in S.cerevisiae. ATG17 and ATG11 are large similar proteins, both predicted to be almost entirely helical, containing conserved coiled-coil regions and lack obvious functional motifs.
Pssm-ID: 427715 [Multi-domain] Cd Length: 360 Bit Score: 40.83 E-value: 4.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 901 HLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLE 980
Cdd:pfam04108 22 LLEELVVLLAKIAFLRRGLSVQLANLEKVREGLEKVLNELKKDFKQLLKDLDAALERLEETLDKLRNTPVEPALPPGEEK 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 981 EKY-------TTIKDLTAELRECKMEIEDKKQElleMDQALKERNWELKQraaqvTHLDMTIREHRGEMEQKIIKLEGTL 1053
Cdd:pfam04108 102 QKTlldfideDSVEILRDALKELIDELQAAQES---LDSDLKRFDDDLRD-----LQKELESLSSPSESISLIPTLLKEL 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1054 EKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQ----NEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKE 1129
Cdd:pfam04108 174 ESLEEEMASLLESLTNHYDQCVTAVKLTEGGRAEMLEvlenDARELDDVVPELQDRLDEMENNYERLQKLLEQKNSLIDE 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1130 AIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKE-KDAHGNHLAEelgasKVREAHLEARMQ 1208
Cdd:pfam04108 254 LLSALQLIAEIQSRLPEYLAALKEFEERWEEEKETIEDYLSELEDLREFYEGfPSAYGSLLLE-----VERRREWAEKMK 328
|
330
....*....|....*.
gi 1034558170 1209 AEIKKLSAEVESLKEA 1224
Cdd:pfam04108 329 KILRKLAEELDRLQEE 344
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
834-1045 |
5.14e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 5.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 834 SSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTK 913
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 914 TELEKKTNAVKELEKL--QHSTETELTEALQKREVLET------------ELQNAHGELKSTLRQLQELRDVLQKAQLSL 979
Cdd:COG4942 97 AELEAQKEELAELLRAlyRLGRQPPLALLLSPEDFLDAvrrlqylkylapARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034558170 980 EEKYTTIKDLTAELREckmEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQK 1045
Cdd:COG4942 177 EALLAELEEERAALEA---LKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| FPP |
pfam05911 |
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant ... |
291-392 |
5.78e-03 |
|
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant proteins that are filament-like. It interacts with the nuclear envelope-associated protein, MAF1, the WPP family pfam13943.
Pssm-ID: 461778 [Multi-domain] Cd Length: 859 Bit Score: 41.20 E-value: 5.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 291 CGLYKSELEILKEKLRQLKEENNNGKEKLRIMAVKNSEVMAQLTESRQSILKLESELENKDE---ILRDKFSLMNE-NRE 366
Cdd:pfam05911 676 NDLKTEENKRLKEEFEQLKSEKENLEVELASCTENLESTKSQLQESEQLIAELRSELASLKEsnsLAETQLKCMAEsYED 755
|
90 100
....*....|....*....|....*.
gi 1034558170 367 LKVRVAAQNERLDLCQQEIESSRVEL 392
Cdd:pfam05911 756 LETRLTELEAELNELRQKFEALEVEL 781
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
969-1292 |
5.89e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.18 E-value: 5.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 969 RDVLQKAQLSLEEKYTTIKDltAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRgEMEQKIIK 1048
Cdd:PRK02224 179 ERVLSDQRGSLDQLKAQIEE--KEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHE-ERREELET 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1049 LEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEfimlqneQEISQLKKEIERTQqrmKEMESVMKEQEqyiatqyk 1128
Cdd:PRK02224 256 LEAEIEDLRETIAETEREREELAEEVRDLRERLEELE-------EERDDLLAEAGLDD---ADAEAVEARRE-------- 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1129 eaidlgqELRLTREQVQNshtELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLAEELGASkvrEAHLEARmQ 1208
Cdd:PRK02224 318 -------ELEDRDEELRD---RLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEA---REAVEDR-R 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1209 AEIKKLSAEVESLKEAyhmemishqenhakwkisadsqkssVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAA 1288
Cdd:PRK02224 384 EEIEELEEEIEELRER-------------------------FGDAPVDLGNAEDFLEELREERDELREREAELEATLRTA 438
|
....
gi 1034558170 1289 NEAL 1292
Cdd:PRK02224 439 RERV 442
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
967-1300 |
6.20e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.48 E-value: 6.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 967 ELRDVLQKAQLSLEEkytTIKDLTAELRECKMEIE-------------------------------DKKQELLEmdQALK 1015
Cdd:COG3096 215 SLRDYLLPENSGVRK---AFQDMEAALRENRMTLEairvtqsdrdlfkhliteatnyvaadymrhaNERRELSE--RALE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1016 ERNWELKQR----AAQVTHLDMTiREHrGEMEQKIIKLEGTLEKSELELK------ECNKQIESLNDKLQNAKEQLREKE 1085
Cdd:COG3096 290 LRRELFGARrqlaEEQYRLVEMA-REL-EELSARESDLEQDYQAASDHLNlvqtalRQQEKIERYQEDLEELTERLEEQE 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1086 FIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYI------ATQYKEAIdlgQELRLTREQVQNSHTELAEARHQQV 1159
Cdd:COG3096 368 EVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALdvqqtrAIQYQQAV---QALEKARALCGLPDLTPENAEDYLA 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1160 QAQREIERLSSELEDMKQ-LSKEKDAHGNH-----LAEELGASKVRE-AHLEARMQ----AEIKKLSAEVESLKEAYH-M 1227
Cdd:COG3096 445 AFRAKEQQATEEVLELEQkLSVADAARRQFekayeLVCKIAGEVERSqAWQTARELlrryRSQQALAQRLQQLRAQLAeL 524
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034558170 1228 EMISHQENHAKwKISADSQKSSVQQLN--EQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLTKESELT 1300
Cdd:COG3096 525 EQRLRQQQNAE-RLLEEFCQRIGQQLDaaEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELA 598
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
111-310 |
6.52e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.20 E-value: 6.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 111 QEIKSLREKLNKLRQQNACLVTQNHSLMTKFESIHFELTQSRAKVSMLESAQQQAASVPILEEQIINLEAEVSAQDKVLR 190
Cdd:PRK03918 231 KELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELR 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 191 EAENKLE--QSQKMVIEKEQSLQESKEECIKLKVDLLEQTKQGKRAERQRNEALYNAEELSKAFQQYKKKVAEK-LEKVQ 267
Cdd:PRK03918 311 EIEKRLSrlEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLtPEKLE 390
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1034558170 268 AEEEILERNLTNCEKENKRLQERCGLYKSELEILKEKLRQLKE 310
Cdd:PRK03918 391 KELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKK 433
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
914-1130 |
7.86e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.58 E-value: 7.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 914 TELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAEL 993
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARAL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 994 RECKMEIE------------------DKKQELLEMDQALKErnwELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEK 1055
Cdd:COG3883 96 YRSGGSVSyldvllgsesfsdfldrlSALSKIADADADLLE---ELKADKAELEAKKAELEAKLAELEALKAELEAAKAE 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034558170 1056 SELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEA 1130
Cdd:COG3883 173 LEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAA 247
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
943-1121 |
8.47e-03 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 40.78 E-value: 8.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 943 KREVLETELQNAHGELKSTLRQLQELRdvlQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELK 1022
Cdd:pfam05667 304 EKLQFTNEAPAATSSPPTKVETEEELQ---QQREEELEELQEQLEDLESSIQELEKEIKKLESSIKQVEEELEELKEQNE 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1023 QRAAQVTHLDMTIrEHRGEMEQKIIKLEGTLEKSELELKECNKQIES----LNDKLQNAKEQLREKEFimlqneqEISQL 1098
Cdd:pfam05667 381 ELEKQYKVKKKTL-DLLPDAEENIAKLQALVDASAQRLVELAGQWEKhrvpLIEEYRALKEAKSNKED-------ESQRK 452
|
170 180
....*....|....*....|...
gi 1034558170 1099 KKEIERTQQRMKEMESVMKEQEQ 1121
Cdd:pfam05667 453 LEEIKELREKIKEVAEEAKQKEE 475
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
848-1173 |
8.47e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 8.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 848 SAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKR------DGENKAMHLSQLDMiLDQTKTELEKKTN 921
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRlaeyswDEIDVASAEREIAE-LEAELERLDASSD 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 922 AVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTikDLTAELREckmEIE 1001
Cdd:COG4913 686 DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRA--LLEERFAA---ALG 760
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1002 DKKQEllEMDQALKERNWELKQRAAQ-VTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNkQIEslNDKLQNAKEQ 1080
Cdd:COG4913 761 DAVER--ELRENLEERIDALRARLNRaEEELERAMRAFNREWPAETADLDADLESLPEYLALLD-RLE--EDGLPEYEER 835
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034558170 1081 LREkefimLQNEQEI-------SQLKKEIERTQQRMKEMESVMKE----QEQYI-----ATQYKEAIDLGQELRLTREQV 1144
Cdd:COG4913 836 FKE-----LLNENSIefvadllSKLRRAIREIKERIDPLNDSLKRipfgPGRYLrlearPRPDPEVREFRQELRAVTSGA 910
|
330 340
....*....|....*....|....*....
gi 1034558170 1145 QNSHTELAEARHQQVqaQREIERLSSELE 1173
Cdd:COG4913 911 SLFDEELSEARFAAL--KRLIERLRSEEE 937
|
|
| |
