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Conserved domains on  [gi|1034641035|ref|XP_016864064|]
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toll-like receptor 2 isoform X1 [Homo sapiens]

Protein Classification

toll-like receptor( domain architecture ID 11471523)

toll-like receptor (TLR) is involved in the recognition of microbial pathogens by the innate immune system, which recognize different pathogen-associated molecular patterns

CATH:  3.40.50.10140|3.80.10.10
Gene Ontology:  GO:0005515|GO:0002224|GO:0006955|GO:0004888|GO:0038187
PubMed:  18227810|16675322|34199501|16822173|11751054|7583641|14747988
SCOP:  4003523

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TIR smart00255
Toll - interleukin 1 - resistance;
640-784 1.06e-40

Toll - interleukin 1 - resistance;


:

Pssm-ID: 214587 [Multi-domain]  Cd Length: 140  Bit Score: 145.93  E-value: 1.06e-40
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035  640 CYDAFVSYSERDayWVENLMVQELENFNPPFKLCLHKRDFIPGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCKYELDF 719
Cdd:smart00255   1 EYDVFISYSGKE--DVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVA 78

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034641035  720 SHFRLFDENNDAAILILLEPIeKKAIPQRFCKLRKIMnTKTYLEWPMDEAQRegFWVNLRAAIKS 784
Cdd:smart00255  79 ALENALEEGGLRVIPIFYEVI-PSDVRKQPGKFRKVF-KKNYLKWPEDEKEQ--FWKKALYAVPS 139
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
39-296 1.99e-14

Leucine-rich repeat (LRR) protein [Transcription];


:

Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 76.13  E-value: 1.99e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035  39 SSGSLNSIPSGLTE--AVKSLDLSNNRITYISNSdLQRCVNLQALVLTSNGINTIEEdSFSSLGSLEHLDLSYNYLSNLS 116
Cdd:COG4886   144 SNNQLTDLPEPLGNltNLKSLDLSNNQLTDLPEE-LGNLTNLKELDLSNNQITDLPE-PLGNLTNLEELDLSGNQLTDLP 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035 117 SSwFKPLSSLTFLNLLGNPYKTLGEtslFSHLTKLQILRVGNmdtfTKIQR-KDFAGLTFLEELEIDASDLQSYEPKSLK 195
Cdd:COG4886   222 EP-LANLTNLETLDLSNNQLTDLPE---LGNLTNLEELDLSN----NQLTDlPPLANLTNLKTLDLSNNQLTDLKLKELE 293

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035 196 SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ 275
Cdd:COG4886   294 LLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLG 373

                         250       260
                  ....*....|....*....|.
gi 1034641035 276 ISGLLELEFDDCTLNGVGNFR 296
Cdd:COG4886   374 LLEATLLTLALLLLTLLLLLL 394
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
221-556 4.71e-14

Leucine-rich repeat (LRR) protein [Transcription];


:

Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 74.97  E-value: 4.71e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035 221 TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFDDCTLNGVGNFRASDN 300
Cdd:COG4886     6 LSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035 301 DrvIDPGKVETLT-IRRLHIPRFYLFYDLSTLYSLTERVKRITVenskvflVPCLLSQhLKSLEYLDLSENLM--VEEYL 377
Cdd:COG4886    86 L--LGLTDLGDLTnLTELDLSGNEELSNLTNLESLDLSGNQLTD-------LPEELAN-LTNLKELDLSNNQLtdLPEPL 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035 378 KNsacedaWPSLQTLILRQNHLASLektGETLLTLKNLTNIDISKNSFHSMPETCQWPEKMKYLNLSSTRIHSVTGCIP- 456
Cdd:COG4886   156 GN------LTNLKSLDLSNNQLTDL---PEELGNLTNLKELDLSNNQITDLPEPLGNLTNLEELDLSGNQLTDLPEPLAn 226

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035 457 -KTLEILDVS--NNNLNLFSLNLPQLKELYISRNKLMTLPDASLLPMLLVLKISRNAITTFSKEQLDSFHTLKTLEAGGN 533
Cdd:COG4886   227 lTNLETLDLSnnQLTDLPELGNLTNLEELDLSNNQLTDLPPLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLL 306

                         330       340
                  ....*....|....*....|...
gi 1034641035 534 NFICSCEFLSFTQEQQALAKVLI 556
Cdd:COG4886   307 LLNLLELLILLLLLTTLLLLLLL 329
LRRCT smart00082
Leucine rich repeat C-terminal domain;
533-586 1.70e-07

Leucine rich repeat C-terminal domain;


:

Pssm-ID: 214507 [Multi-domain]  Cd Length: 51  Bit Score: 48.20  E-value: 1.70e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1034641035  533 NNFICSCEFLSFTQEQQalAKVLIDWPANYLCDSPSHVRGQQVQDVRlSVSECH 586
Cdd:smart00082   1 NPFICDCELRWLLRWLQ--ANEHLQDPVDLRCASPSSLRGPLLELLH-SEFKCP 51
 
Name Accession Description Interval E-value
TIR smart00255
Toll - interleukin 1 - resistance;
640-784 1.06e-40

Toll - interleukin 1 - resistance;


Pssm-ID: 214587 [Multi-domain]  Cd Length: 140  Bit Score: 145.93  E-value: 1.06e-40
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035  640 CYDAFVSYSERDayWVENLMVQELENFNPPFKLCLHKRDFIPGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCKYELDF 719
Cdd:smart00255   1 EYDVFISYSGKE--DVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVA 78

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034641035  720 SHFRLFDENNDAAILILLEPIeKKAIPQRFCKLRKIMnTKTYLEWPMDEAQRegFWVNLRAAIKS 784
Cdd:smart00255  79 ALENALEEGGLRVIPIFYEVI-PSDVRKQPGKFRKVF-KKNYLKWPEDEKEQ--FWKKALYAVPS 139
TIR pfam01582
TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular ...
 641-767 4.09e-18

TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades.


Pssm-ID: 396246 [Multi-domain]  Cd Length: 165  Bit Score: 82.41  E-value: 4.09e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035 641 YDAFVSYSERDAywVENLMVQELENFN-PPFKLCLHKRDFIPGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCKYELDF 719
Cdd:pfam01582   1 YDVFLSFRGSDT--REWFVSHLLKELKqKGIKLFIDDRDLEPGEAIAPELLSAIEKSRRSVVVLSPNYASSGWCLDELVK 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1034641035 720 S-HFRLfdENNDAAILILLEPIE------KKAIPQRFCKLRKIMNTKTYLEWPMD 767
Cdd:pfam01582  79 IlECAL--DLGQKVIPIFYEVDPsdvrkqTGSFGKAFKKHKKVLTEEKVLKWRGA 131
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
39-296 1.99e-14

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 76.13  E-value: 1.99e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035  39 SSGSLNSIPSGLTE--AVKSLDLSNNRITYISNSdLQRCVNLQALVLTSNGINTIEEdSFSSLGSLEHLDLSYNYLSNLS 116
Cdd:COG4886   144 SNNQLTDLPEPLGNltNLKSLDLSNNQLTDLPEE-LGNLTNLKELDLSNNQITDLPE-PLGNLTNLEELDLSGNQLTDLP 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035 117 SSwFKPLSSLTFLNLLGNPYKTLGEtslFSHLTKLQILRVGNmdtfTKIQR-KDFAGLTFLEELEIDASDLQSYEPKSLK 195
Cdd:COG4886   222 EP-LANLTNLETLDLSNNQLTDLPE---LGNLTNLEELDLSN----NQLTDlPPLANLTNLKTLDLSNNQLTDLKLKELE 293

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035 196 SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ 275
Cdd:COG4886   294 LLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLG 373

                         250       260
                  ....*....|....*....|.
gi 1034641035 276 ISGLLELEFDDCTLNGVGNFR 296
Cdd:COG4886   374 LLEATLLTLALLLLTLLLLLL 394
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
221-556 4.71e-14

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 74.97  E-value: 4.71e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035 221 TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFDDCTLNGVGNFRASDN 300
Cdd:COG4886     6 LSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035 301 DrvIDPGKVETLT-IRRLHIPRFYLFYDLSTLYSLTERVKRITVenskvflVPCLLSQhLKSLEYLDLSENLM--VEEYL 377
Cdd:COG4886    86 L--LGLTDLGDLTnLTELDLSGNEELSNLTNLESLDLSGNQLTD-------LPEELAN-LTNLKELDLSNNQLtdLPEPL 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035 378 KNsacedaWPSLQTLILRQNHLASLektGETLLTLKNLTNIDISKNSFHSMPETCQWPEKMKYLNLSSTRIHSVTGCIP- 456
Cdd:COG4886   156 GN------LTNLKSLDLSNNQLTDL---PEELGNLTNLKELDLSNNQITDLPEPLGNLTNLEELDLSGNQLTDLPEPLAn 226

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035 457 -KTLEILDVS--NNNLNLFSLNLPQLKELYISRNKLMTLPDASLLPMLLVLKISRNAITTFSKEQLDSFHTLKTLEAGGN 533
Cdd:COG4886   227 lTNLETLDLSnnQLTDLPELGNLTNLEELDLSNNQLTDLPPLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLL 306

                         330       340
                  ....*....|....*....|...
gi 1034641035 534 NFICSCEFLSFTQEQQALAKVLI 556
Cdd:COG4886   307 LLNLLELLILLLLLTTLLLLLLL 329
LRR_8 pfam13855
Leucine rich repeat;
77-135 6.46e-12

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 61.00  E-value: 6.46e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1034641035  77 NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP 135
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNR 60
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
324-558 7.43e-09

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 59.33  E-value: 7.43e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035 324 LFYDLSTLYSLTER----VKRITVENSKVFLVPCLLSQhlkSLEYLDLSENLMVE--EYLknsacedawPS-LQTLILRQ 396
Cdd:PRK15370  204 LILDNNELKSLPENlqgnIKTLYANSNQLTSIPATLPD---TIQEMELSINRITElpERL---------PSaLQSLDLFH 271

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035 397 NHLASLEKTgetllTLKNLTNIDISKNSFHSMPEtcQWPEKMKYLNLSStriHSVTGcIPKTLEildvsnnnlnlfslnl 476
Cdd:PRK15370  272 NKISCLPEN-----LPEELRYLSVYDNSIRTLPA--HLPSGITHLNVQS---NSLTA-LPETLP---------------- 324

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035 477 PQLKELYISRNKLMTLPdASLLPMLLVLKISRNAITTFSK------EQLDSFH------------TLKTLEAGGNNFICS 538
Cdd:PRK15370  325 PGLKTLEAGENALTSLP-ASLPPELQVLDVSKNQITVLPEtlpptiTTLDVSRnaltnlpenlpaALQIMQASRNNLVRL 403

                         250       260
                  ....*....|....*....|.
gi 1034641035 539 CEFL-SFTQEQQALAKVLIDW 558
Cdd:PRK15370  404 PESLpHFRGEGPQPTRIIVEY 424
LRRCT smart00082
Leucine rich repeat C-terminal domain;
533-586 1.70e-07

Leucine rich repeat C-terminal domain;


Pssm-ID: 214507 [Multi-domain]  Cd Length: 51  Bit Score: 48.20  E-value: 1.70e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1034641035  533 NNFICSCEFLSFTQEQQalAKVLIDWPANYLCDSPSHVRGQQVQDVRlSVSECH 586
Cdd:smart00082   1 NPFICDCELRWLLRWLQ--ANEHLQDPVDLRCASPSSLRGPLLELLH-SEFKCP 51
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 57-209 2.56e-06

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 49.01  E-value: 2.56e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035  57 LDLSNNRITYISNsdLQRCVNLQALVLTSNGINTIEedSFSSLGSLEHLDLSYNYLS---NLSSswfkpLSSLTFLNL-- 131
Cdd:cd21340    29 LYLYDNKITKIEN--LEFLTNLTHLYLQNNQIEKIE--NLENLVNLKKLYLGGNRISvveGLEN-----LTNLEELHIen 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035 132 ----LGNPYkTLGETSLFSHLTKLQILRVGNmdtfTKIQR-KDFAGLTFLEELeiDASDLQsyepksLKSIQNVSHLILH 206
Cdd:cd21340   100 qrlpPGEKL-TFDPRSLAALSNSLRVLNISG----NNIDSlEPLAPLRNLEQL--DASNNQ------ISDLEELLDLLSS 166


                  ...
gi 1034641035 207 MKQ 209
Cdd:cd21340   167 WPS 169
PLN03150 PLN03150
hypothetical protein; Provisional
 54-134 1.85e-05

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 48.27  E-value: 1.85e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035  54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG 133
Cdd:PLN03150  420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499


                  .
gi 1034641035 134 N 134
Cdd:PLN03150  500 N 500
LRR_8 pfam13855
Leucine rich repeat;
477-535 4.82e-05

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 41.74  E-value: 4.82e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034641035 477 PQLKELYISRNKLMTLPDASL--LPMLLVLKISRNAITTFSKEQLDSFHTLKTLEAGGNNF 535
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAFkgLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRRCT pfam01463
Leucine rich repeat C-terminal domain; Leucine Rich Repeats pfam00560 are short sequence ...
 561-586 3.96e-03

Leucine rich repeat C-terminal domain; Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the C-terminus of tandem leucine rich repeats.


Pssm-ID: 279765  Cd Length: 26  Bit Score: 35.49  E-value: 3.96e-03
                          10        20
                  ....*....|....*....|....*.
gi 1034641035 561 NYLCDSPSHVRGQQVQDVRLSVSECH 586
Cdd:pfam01463   1 NARCASPPRLRGQPLLDLLPSDFSCS 26
 
Name Accession Description Interval E-value
TIR smart00255
Toll - interleukin 1 - resistance;
640-784 1.06e-40

Toll - interleukin 1 - resistance;


Pssm-ID: 214587 [Multi-domain]  Cd Length: 140  Bit Score: 145.93  E-value: 1.06e-40
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035  640 CYDAFVSYSERDayWVENLMVQELENFNPPFKLCLHKRDFIPGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCKYELDF 719
Cdd:smart00255   1 EYDVFISYSGKE--DVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVA 78

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034641035  720 SHFRLFDENNDAAILILLEPIeKKAIPQRFCKLRKIMnTKTYLEWPMDEAQRegFWVNLRAAIKS 784
Cdd:smart00255  79 ALENALEEGGLRVIPIFYEVI-PSDVRKQPGKFRKVF-KKNYLKWPEDEKEQ--FWKKALYAVPS 139
TIR pfam01582
TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular ...
 641-767 4.09e-18

TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades.


Pssm-ID: 396246 [Multi-domain]  Cd Length: 165  Bit Score: 82.41  E-value: 4.09e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035 641 YDAFVSYSERDAywVENLMVQELENFN-PPFKLCLHKRDFIPGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCKYELDF 719
Cdd:pfam01582   1 YDVFLSFRGSDT--REWFVSHLLKELKqKGIKLFIDDRDLEPGEAIAPELLSAIEKSRRSVVVLSPNYASSGWCLDELVK 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1034641035 720 S-HFRLfdENNDAAILILLEPIE------KKAIPQRFCKLRKIMNTKTYLEWPMD 767
Cdd:pfam01582  79 IlECAL--DLGQKVIPIFYEVDPsdvrkqTGSFGKAFKKHKKVLTEEKVLKWRGA 131
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
39-296 1.99e-14

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 76.13  E-value: 1.99e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035  39 SSGSLNSIPSGLTE--AVKSLDLSNNRITYISNSdLQRCVNLQALVLTSNGINTIEEdSFSSLGSLEHLDLSYNYLSNLS 116
Cdd:COG4886   144 SNNQLTDLPEPLGNltNLKSLDLSNNQLTDLPEE-LGNLTNLKELDLSNNQITDLPE-PLGNLTNLEELDLSGNQLTDLP 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035 117 SSwFKPLSSLTFLNLLGNPYKTLGEtslFSHLTKLQILRVGNmdtfTKIQR-KDFAGLTFLEELEIDASDLQSYEPKSLK 195
Cdd:COG4886   222 EP-LANLTNLETLDLSNNQLTDLPE---LGNLTNLEELDLSN----NQLTDlPPLANLTNLKTLDLSNNQLTDLKLKELE 293

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035 196 SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ 275
Cdd:COG4886   294 LLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLG 373

                         250       260
                  ....*....|....*....|.
gi 1034641035 276 ISGLLELEFDDCTLNGVGNFR 296
Cdd:COG4886   374 LLEATLLTLALLLLTLLLLLL 394
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
39-334 3.36e-14

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 75.36  E-value: 3.36e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035  39 SSGSLNSIPSGLTE--AVKSLDLSNNRITYISnSDLQRCVNLQALVLTSNGINTIEEdSFSSLGSLEHLDLSYNYLSNLS 116
Cdd:COG4886   121 SGNQLTDLPEELANltNLKELDLSNNQLTDLP-EPLGNLTNLKSLDLSNNQLTDLPE-ELGNLTNLKELDLSNNQITDLP 198

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035 117 SSwFKPLSSLTFLNLLGNPYKTLGETslFSHLTKLQILRVGNmdtfTKIQR-KDFAGLTFLEELEIDASDLQSYEPksLK 195
Cdd:COG4886   199 EP-LGNLTNLEELDLSGNQLTDLPEP--LANLTNLETLDLSN----NQLTDlPELGNLTNLEELDLSNNQLTDLPP--LA 269

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035 196 SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ 275
Cdd:COG4886   270 NLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLAL 349

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1034641035 276 ISGLLELEFDDCTLNGVGNFRASDNDRVIDPGKVETLTIRRLHIPRFYLFYDLSTLYSL 334
Cdd:COG4886   350 LTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLLLTTTAGVLLLTLALL 408
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
221-556 4.71e-14

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 74.97  E-value: 4.71e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035 221 TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFDDCTLNGVGNFRASDN 300
Cdd:COG4886     6 LSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035 301 DrvIDPGKVETLT-IRRLHIPRFYLFYDLSTLYSLTERVKRITVenskvflVPCLLSQhLKSLEYLDLSENLM--VEEYL 377
Cdd:COG4886    86 L--LGLTDLGDLTnLTELDLSGNEELSNLTNLESLDLSGNQLTD-------LPEELAN-LTNLKELDLSNNQLtdLPEPL 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035 378 KNsacedaWPSLQTLILRQNHLASLektGETLLTLKNLTNIDISKNSFHSMPETCQWPEKMKYLNLSSTRIHSVTGCIP- 456
Cdd:COG4886   156 GN------LTNLKSLDLSNNQLTDL---PEELGNLTNLKELDLSNNQITDLPEPLGNLTNLEELDLSGNQLTDLPEPLAn 226

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035 457 -KTLEILDVS--NNNLNLFSLNLPQLKELYISRNKLMTLPDASLLPMLLVLKISRNAITTFSKEQLDSFHTLKTLEAGGN 533
Cdd:COG4886   227 lTNLETLDLSnnQLTDLPELGNLTNLEELDLSNNQLTDLPPLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLL 306

                         330       340
                  ....*....|....*....|...
gi 1034641035 534 NFICSCEFLSFTQEQQALAKVLI 556
Cdd:COG4886   307 LLNLLELLILLLLLTTLLLLLLL 329
TIR_2 pfam13676
TIR domain; This is a family of Toll-like receptors.
 644-718 1.18e-13

TIR domain; This is a family of Toll-like receptors.


Pssm-ID: 463954 [Multi-domain]  Cd Length: 118  Bit Score: 68.11  E-value: 1.18e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034641035 644 FVSYSERDAYWVENLmVQELENFNppFKLCLHKRDFIPGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCKYELD 718
Cdd:pfam13676   2 FISYAGEDRAWAEWL-ADALEAAG--YRVWLDRWDIRPGDDWVEEIEEAIENSDRVLVVLSPNYLESPWCRAEWE 73
LRR_8 pfam13855
Leucine rich repeat;
77-135 6.46e-12

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 61.00  E-value: 6.46e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1034641035  77 NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP 135
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNR 60
LRR_8 pfam13855
Leucine rich repeat;
54-112 8.65e-10

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 55.22  E-value: 8.65e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1034641035  54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112
Cdd:pfam13855   3 LRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
324-558 7.43e-09

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 59.33  E-value: 7.43e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035 324 LFYDLSTLYSLTER----VKRITVENSKVFLVPCLLSQhlkSLEYLDLSENLMVE--EYLknsacedawPS-LQTLILRQ 396
Cdd:PRK15370  204 LILDNNELKSLPENlqgnIKTLYANSNQLTSIPATLPD---TIQEMELSINRITElpERL---------PSaLQSLDLFH 271

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035 397 NHLASLEKTgetllTLKNLTNIDISKNSFHSMPEtcQWPEKMKYLNLSStriHSVTGcIPKTLEildvsnnnlnlfslnl 476
Cdd:PRK15370  272 NKISCLPEN-----LPEELRYLSVYDNSIRTLPA--HLPSGITHLNVQS---NSLTA-LPETLP---------------- 324

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035 477 PQLKELYISRNKLMTLPdASLLPMLLVLKISRNAITTFSK------EQLDSFH------------TLKTLEAGGNNFICS 538
Cdd:PRK15370  325 PGLKTLEAGENALTSLP-ASLPPELQVLDVSKNQITVLPEtlpptiTTLDVSRnaltnlpenlpaALQIMQASRNNLVRL 403

                         250       260
                  ....*....|....*....|.
gi 1034641035 539 CEFL-SFTQEQQALAKVLIDW 558
Cdd:PRK15370  404 PESLpHFRGEGPQPTRIIVEY 424
LRRCT smart00082
Leucine rich repeat C-terminal domain;
533-586 1.70e-07

Leucine rich repeat C-terminal domain;


Pssm-ID: 214507 [Multi-domain]  Cd Length: 51  Bit Score: 48.20  E-value: 1.70e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1034641035  533 NNFICSCEFLSFTQEQQalAKVLIDWPANYLCDSPSHVRGQQVQDVRlSVSECH 586
Cdd:smart00082   1 NPFICDCELRWLLRWLQ--ANEHLQDPVDLRCASPSSLRGPLLELLH-SEFKCP 51
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
359-555 1.62e-06

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 51.09  E-value: 1.62e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035 359 LKSLEYLDLSENLMVE--EYLKNsacedaWPSLQTLILRQNHLASLektGETLLTLKNLTNIDISKNSFHSMPETCQWPe 436
Cdd:COG4886   181 LTNLKELDLSNNQITDlpEPLGN------LTNLEELDLSGNQLTDL---PEPLANLTNLETLDLSNNQLTDLPELGNLT- 250

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035 437 KMKYLNLSSTRIHSvtgcIPKTLEIldvsnnnlnlfslnlPQLKELYISRNKLMTLPDASLLPMLLVLKISRNAITTFSK 516
Cdd:COG4886   251 NLEELDLSNNQLTD----LPPLANL---------------TNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLL 311

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1034641035 517 EQLDSFHTLKTLEAGGNNFICSCEFLSFTQEQQALAKVL 555
Cdd:COG4886   312 ELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALL 350
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 57-209 2.56e-06

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 49.01  E-value: 2.56e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035  57 LDLSNNRITYISNsdLQRCVNLQALVLTSNGINTIEedSFSSLGSLEHLDLSYNYLS---NLSSswfkpLSSLTFLNL-- 131
Cdd:cd21340    29 LYLYDNKITKIEN--LEFLTNLTHLYLQNNQIEKIE--NLENLVNLKKLYLGGNRISvveGLEN-----LTNLEELHIen 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035 132 ----LGNPYkTLGETSLFSHLTKLQILRVGNmdtfTKIQR-KDFAGLTFLEELeiDASDLQsyepksLKSIQNVSHLILH 206
Cdd:cd21340   100 qrlpPGEKL-TFDPRSLAALSNSLRVLNISG----NNIDSlEPLAPLRNLEQL--DASNNQ------ISDLEELLDLLSS 166


                  ...
gi 1034641035 207 MKQ 209
Cdd:cd21340   167 WPS 169
PLN03150 PLN03150
hypothetical protein; Provisional
 54-134 1.85e-05

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 48.27  E-value: 1.85e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035  54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG 133
Cdd:PLN03150  420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499


                  .
gi 1034641035 134 N 134
Cdd:PLN03150  500 N 500
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 57-199 3.86e-05

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 45.55  E-value: 3.86e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035  57 LDLSNNRITYISNsdLQRCVNLQALVLTSNGINTIEedSFSSLGSLEHLDLSYNYLS---NLSSswfkpLSSLTFLNLLG 133
Cdd:cd21340     7 LYLNDKNITKIDN--LSLCKNLKVLYLYDNKITKIE--NLEFLTNLTHLYLQNNQIEkieNLEN-----LVNLKKLYLGG 77

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034641035 134 NpyktlgetslfshltklQILRVGNMDtftkiqrkdfaGLTFLEELEIDASDLQS-----YEPKSLKSIQN 199
Cdd:cd21340    78 N-----------------RISVVEGLE-----------NLTNLEELHIENQRLPPgekltFDPRSLAALSN 120
LRR_8 pfam13855
Leucine rich repeat;
477-535 4.82e-05

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 41.74  E-value: 4.82e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034641035 477 PQLKELYISRNKLMTLPDASL--LPMLLVLKISRNAITTFSKEQLDSFHTLKTLEAGGNNF 535
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAFkgLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 57-135 5.09e-05

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 45.16  E-value: 5.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035  57 LDLSNNRITYISNsdLQRCVNLQAL----------------------------VLT--SNGINTIEEdsFSSLGSLEHLD 106
Cdd:cd21340    73 LYLGGNRISVVEG--LENLTNLEELhienqrlppgekltfdprslaalsnslrVLNisGNNIDSLEP--LAPLRNLEQLD 148

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1034641035 107 LSYNYLSNLS--SSWFKPLSSLTFLNLLGNP 135
Cdd:cd21340   149 ASNNQISDLEelLDLLSSWPSLRELDLTGNP 179
LRR_9 pfam14580
Leucine-rich repeat;
54-169 2.75e-04

Leucine-rich repeat;


Pssm-ID: 405295 [Multi-domain]  Cd Length: 175  Bit Score: 42.44  E-value: 2.75e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035  54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNgintieedSFSSLGSLEHLdlsynylsnlssswfKPLSSLTFLNLLG 133
Cdd:pfam14580  66 LKTLLLNNNRICRIGEGLGEALPNLTELILTNN--------NLQELGDLDPL---------------ASLKKLTFLSLLR 122

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1034641035 134 NPYKTLGETSLFShLTKLQILRVGNmdtFTKIQRKD 169
Cdd:pfam14580 123 NPVTNKPHYRLYV-IYKVPQLRLLD---FRKVKQKE 154
PRK15387 PRK15387
type III secretion system effector E3 ubiquitin transferase SspH2;
387-533 4.49e-04

type III secretion system effector E3 ubiquitin transferase SspH2;


Pssm-ID: 185285 [Multi-domain]  Cd Length: 788  Bit Score: 44.00  E-value: 4.49e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035 387 PSLQTLILRQNHLASLEKTGETLLTL--------------KNLTNIDISKNSFHSMPETcqwPEKMKYLNLSSTRIHSVT 452
Cdd:PRK15387  302 PGLQELSVSDNQLASLPALPSELCKLwaynnqltslptlpSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLP 378

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035 453 GcIPKTLEILDVSNNNLNLFSLNLPQLKELYISRNKLMTLPdasLLPM-LLVLKISRNAITTFSkEQLDSFHTLKTLEAG 531
Cdd:PRK15387  379 A-LPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLP---MLPSgLLSLSVYRNQLTRLP-ESLIHLSSETTVNLE 453


                  ..
gi 1034641035 532 GN 533
Cdd:PRK15387  454 GN 455
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 49-110 5.52e-04

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 42.08  E-value: 5.52e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1034641035  49 GLTEAVKSLDLSNNRITYIsnSDLQRCVNLQALVLTSNGINTIEE--DSFSSLGSLEHLDLSYN 110
Cdd:cd21340   117 ALSNSLRVLNISGNNIDSL--EPLAPLRNLEQLDASNNQISDLEEllDLLSSWPSLRELDLTGN 178
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 40-206 7.05e-04

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 43.30  E-value: 7.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035  40 SGSLnsiPSGLTEA--VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSlGSLEHLDLSYNYLSNLSS 117
Cdd:PLN00113  417 SGEL---PSEFTKLplVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVP 492

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035 118 SWFKPLSSLTFLNLLGNpyKTLGET-SLFSHLTKLQILRVGNmDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 196
Cdd:PLN00113  493 RKLGSLSELMQLKLSEN--KLSGEIpDELSSCKKLVSLDLSH-NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGN 569

                         170
                  ....*....|....*
gi 1034641035 197 IQ-----NVSHLILH 206
Cdd:PLN00113  570 VEslvqvNISHNHLH 584
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 22-113 1.75e-03

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 41.76  E-value: 1.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034641035  22 SSNQASLSCDRNGICKGSSGSLNSIPSglteaVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101
Cdd:PLN00113  474 SKRLENLDLSRNQFSGAVPRKLGSLSE-----LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPV 548

                          90
                  ....*....|..
gi 1034641035 102 LEHLDLSYNYLS 113
Cdd:PLN00113  549 LSQLDLSQNQLS 560
LRR_8 pfam13855
Leucine rich repeat;
387-448 3.92e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 36.35  E-value: 3.92e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1034641035 387 PSLQTLILRQNHLASLEKtgETLLTLKNLTNIDISKNSFHSM-PETCQWPEKMKYLNLSSTRI 448
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDD--GAFKGLSNLKVLDLSNNLLTTLsPGAFSGLPSLRYLDLSGNRL 61
LRRCT pfam01463
Leucine rich repeat C-terminal domain; Leucine Rich Repeats pfam00560 are short sequence ...
 561-586 3.96e-03

Leucine rich repeat C-terminal domain; Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the C-terminus of tandem leucine rich repeats.


Pssm-ID: 279765  Cd Length: 26  Bit Score: 35.49  E-value: 3.96e-03
                          10        20
                  ....*....|....*....|....*.
gi 1034641035 561 NYLCDSPSHVRGQQVQDVRLSVSECH 586
Cdd:pfam01463   1 NARCASPPRLRGQPLLDLLPSDFSCS 26
LRR_8 pfam13855
Leucine rich repeat;
39-88 5.11e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 35.96  E-value: 5.11e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1034641035  39 SSGSLNSIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI 88
Cdd:pfam13855   9 SNNRLTSLDDGAfkgLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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