|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
60-796 |
1.09e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 82.80 E-value: 1.09e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 60 LASYESQIAKLRSEVEKGEALRQ------SLEYDLAVAR-KEAGLGRRAAEERLAEAHRIQEKLCAQNSELQAKTNETEK 132
Cdd:TIGR02168 195 LNELERQLKSLERQAEKAERYKElkaelrELELALLVLRlEELREELEELQEELKEAEEELEELTAELQELEEKLEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 133 AFQtsqqKWKEECRRFEHDLEERDNMIQNCNREYDLLMKEKSRLEKTLQEALEkhQREKNEMESHIRETALEEFRLQEEQ 212
Cdd:TIGR02168 275 EVS----ELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEA--QLEELESKLDELAEELAELEEKLEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 213 WEAERRELQFIVQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERA 292
Cdd:TIGR02168 349 LKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLK 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 293 AHLESKFnsEIIQLRIRDLEGALQVEKASQAEAVADLEIIKNEFKEVESAYEREKHNAQESFAKLNLLE-----KEYFSK 367
Cdd:TIGR02168 429 KLEEAEL--KELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLErlqenLEGFSE 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 368 NKKLNEDIEEQKKVIID-------------------LSKRLQY----NEKSCSELQEELVMAKKHQAFLVETCENNVKEL 424
Cdd:TIGR02168 507 GVKALLKNQSGLSGILGvlselisvdegyeaaieaaLGGRLQAvvveNLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEI 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 425 ESILDSFTVSGQWTSGIHKDKDK-PPSFSVVLE-RLRRTL--TDYQNKLEDASNELNSMNDV----------------KE 484
Cdd:TIGR02168 587 QGNDREILKNIEGFLGVAKDLVKfDPKLRKALSyLLGGVLvvDDLDNALELAKKLRPGYRIVtldgdlvrpggvitggSA 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 485 KACNELDSTKQKIDSHTKNIK-------ELQDKLADVNKELSHLHTKCADREAL---ISTLKVELQNVLHCWEKEKAQAA 554
Cdd:TIGR02168 667 KTNSSILERRREIEELEEKIEeleekiaELEKALAELRKELEELEEELEQLRKEleeLSRQISALRKDLARLEAEVEQLE 746
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 555 QSESELQKLSQAFHKDAEEKLTFLHTLYQHLVAGCVLIKQPEGMLDKFswSELCAVLQENVDALIADLNRANEKIRHLEY 634
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQL--KEELKALREALDELRAELTLLNEEAANLRE 824
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 635 ICKNKSDTMRELQQTQEDTftkvaeqikaqescwHRQKKELELQyselflevqkraqkfQEIAEKNMEKLN-HIEKSHEQ 713
Cdd:TIGR02168 825 RLESLERRIAATERRLEDL---------------EEQIEELSED---------------IESLAAEIEELEeLIEELESE 874
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 714 LVlensHFKKLLSQTQREQMSLLAACALMAGALYPLYSRSCALSTQRDFLQEQVNTFEL----FKLEIRTLAQALSTVEE 789
Cdd:TIGR02168 875 LE----ALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELrlegLEVRIDNLQERLSEEYS 950
|
....*..
gi 1034664281 790 KKQEEAK 796
Cdd:TIGR02168 951 LTLEEAE 957
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
64-378 |
1.71e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.73 E-value: 1.71e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 64 ESQIAKLRSEVEKgeALR-QSLEYDLAvarkeaglgRRAAEERLAEAHRIQEKLCAQNSELQAKTNETEKAfQTSQQKWK 142
Cdd:COG1196 199 ERQLEPLERQAEK--AERyRELKEELK---------ELEAELLLLKLRELEAELEELEAELEELEAELEEL-EAELAELE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 143 EECRRFEHDLEERDNMIQNCNREYDLLMKEKSRLEKTLQEALEKHQREKNEmeshiretaLEEFRLQEEQWEAERRELQF 222
Cdd:COG1196 267 AELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEER---------LEELEEELAELEEELEELEE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 223 IVQEQDTAVQNMHKKVEKLETEhmdcsdLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAE-RAAHLESKfnS 301
Cdd:COG1196 338 ELEELEEELEEAEEELEEAEAE------LAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAaQLEELEEA--E 409
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1034664281 302 EIIQLRIRDLEGALQVEKASQAEAVADLEIIKNEFKEVESAYEREKHNAQESFAKLNLLEKEYFSKNKKLNEDIEEQ 378
Cdd:COG1196 410 EALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
68-377 |
1.74e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.39 E-value: 1.74e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 68 AKLRSEVEKGEALRQSLEYDLAVARKEaglgRRAAEERLAEAHRIQEKLCAQNSELQAKTNETEKAFQTSQQKWKEecrr 147
Cdd:TIGR02169 670 RSEPAELQRLRERLEGLKRELSSLQSE----LRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEE---- 741
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 148 FEHDLEERDNMIQNCNREYDLLMKEKSRLEKTL---QEALEkhqreknEMESHIRETALEEFRLQEEQWEAERRELQFIV 224
Cdd:TIGR02169 742 LEEDLSSLEQEIENVKSELKELEARIEELEEDLhklEEALN-------DLEARLSHSRIPEIQAELSKLEEEVSRIEARL 814
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 225 QEQDTAVQNMHKKVEKLETEHMDcsdlLRRQTSELEfstQREERLRKEFEATTLRVRKLEENIEAeraahleskfnseiI 304
Cdd:TIGR02169 815 REIEQKLNRLTLEKEYLEKEIQE----LQEQRIDLK---EQIKSIEKEIENLNGKKEELEEELEE--------------L 873
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1034664281 305 QLRIRDLEGALQVEKASQAEAVADLEIIKNEFKEVESAYEREKHNAQESFAKLNLLEKEYFSKNKKLNEDIEE 377
Cdd:TIGR02169 874 EAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEI 946
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
164-430 |
3.45e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.49 E-value: 3.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 164 REYDLLMKEKSRLEKTL-----QEALEKHQREKNEMESHirETALEEFRLQEEQWEAERRELQFIVQEQDTAVQNMHKKV 238
Cdd:COG1196 213 ERYRELKEELKELEAELlllklRELEAELEELEAELEEL--EAELEELEAELAELEAELEELRLELEELELELEEAQAEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 239 EKLETEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVE 318
Cdd:COG1196 291 YELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 319 KASQAEAVADLEIIKNEFKEVESA---YEREKHNAQESFAKLNLLEKEYFSKNKKLNEDIEEQKKVIIDLSKRLQYNEKS 395
Cdd:COG1196 371 EAELAEAEEELEELAEELLEALRAaaeLAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450
|
250 260 270
....*....|....*....|....*....|....*
gi 1034664281 396 CSELQEELVMAKKHQAFLVETCENNVKELESILDS 430
Cdd:COG1196 451 EAELEEEEEALLELLAELLEEAALLEAALAELLEE 485
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
131-402 |
5.31e-09 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 60.52 E-value: 5.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 131 EKAFQTSQQKWKEECRRFEHDLEERDNMIQNCNREYDLLMKEKSRLEKTLQEALEKHQREKNEMEshiRETALEEFRLQE 210
Cdd:pfam17380 281 QKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAME---RERELERIRQEE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 211 EqweaeRRELQFIVQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQ-TSELEFSTQREERLRK--EFEATTLRVRKLEENI 287
Cdd:pfam17380 358 R-----KRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQElEAARKVKILEEERQRKiqQQKVEMEQIRAEQEEA 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 288 EAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEA---VADLEIIKNEFKEVESAYEREKHNAQESFA-KLNLLEKE 363
Cdd:pfam17380 433 RQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEerkRKKLELEKEKRDRKRAEEQRRKILEKELEErKQAMIEEE 512
|
250 260 270
....*....|....*....|....*....|....*....
gi 1034664281 364 yfSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEE 402
Cdd:pfam17380 513 --RKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEME 549
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
62-377 |
9.18e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.07 E-value: 9.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 62 SYESQIAKLRSEVEKGEALRQSLEYDLAVARKEAGLGRRAAEERLAEAHRIQEKLCAQNSELQAKTNEtekafqtsQQKW 141
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE--------VEQL 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 142 KEECRRFEHDLEERDNMIqncnreydllMKEKSRLEKtLQEALEKHQREKNEMESHIretalEEFRLQEEQWEAERRELQ 221
Cdd:TIGR02168 746 EERIAQLSKELTELEAEI----------EELEERLEE-AEEELAEAEAEIEELEAQI-----EQLKEELKALREALDELR 809
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 222 FIVQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEA---------ERA 292
Cdd:TIGR02168 810 AELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAllnerasleEAL 889
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 293 AHLESKFNSEIIQLR-----IRDLEGALQVEKASQAEAVADLEIIKNEFKEVESA----YEREKHNAQESFAKLNLLEKE 363
Cdd:TIGR02168 890 ALLRSELEELSEELReleskRSELRRELEELREKLAQLELRLEGLEVRIDNLQERlseeYSLTLEEAEALENKIEDDEEE 969
|
330
....*....|....
gi 1034664281 364 YFSKNKKLNEDIEE 377
Cdd:TIGR02168 970 ARRRLKRLENKIKE 983
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
27-560 |
2.25e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 59.00 E-value: 2.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 27 KNETELDITDNLRKKLHWAKKEKLEITTKHNAELASYESQiaKLRSEVEKGEALRQSLEYdlavARKEAGLGRRAAEERL 106
Cdd:PTZ00121 1385 KKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAK--KKAEEKKKADEAKKKAEE----AKKADEAKKKAEEAKK 1458
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 107 AEAHRIQEKLCAQNSELQAKTNETEKAFQTSQQ-----KWKEECRRFEHDLEERDNM--IQNCNREYDLLMKEKSRLEKT 179
Cdd:PTZ00121 1459 AEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKaeeakKKADEAKKAAEAKKKADEAkkAEEAKKADEAKKAEEAKKADE 1538
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 180 LQEALEKHQREKNEMESHIRETalEEFRLQEEQWEAERRElQFIVQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQTSEL 259
Cdd:PTZ00121 1539 AKKAEEKKKADELKKAEELKKA--EEKKKAEEAKKAEEDK-NMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKA 1615
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 260 EFSTQREERLRKEFE----ATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEavadleiikNE 335
Cdd:PTZ00121 1616 EEAKIKAEELKKAEEekkkVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAE---------ED 1686
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 336 FKEVESAYEREKHNAQESfAKLNLLEKEYFSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEELVMAKKHQAFLVE 415
Cdd:PTZ00121 1687 EKKAAEALKKEAEEAKKA-EELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKE 1765
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 416 ---TCENNVKELESILDSftvsgqwtsgiHKDKDKPPSFSVVLERLRRTLTDYQNKLEDASNELNSMNDVKEKACNELDS 492
Cdd:PTZ00121 1766 eekKAEEIRKEKEAVIEE-----------ELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKE 1834
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1034664281 493 TKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADREALISTLKVELQNVLHCWEKEKAQAAQSESEL 560
Cdd:PTZ00121 1835 VADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREI 1902
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
134-491 |
3.23e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.54 E-value: 3.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 134 FQTSQQKWKEECRRFEHDLEERDNMIQNCNREYDLLMKEKSRLEKtlqeaLEKHQREKNEMESHIRETALEEFRLQEEQW 213
Cdd:TIGR02169 168 FDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAER-----YQALLKEKREYEGYELLKEKEALERQKEAI 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 214 EAERRELQFIVQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQTSElefstqREERLRKEFEATTLRVRKLEENI-----E 288
Cdd:TIGR02169 243 ERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEE------EQLRVKEKIGELEAEIASLERSIaekerE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 289 AERAAHLESKFNSEI--IQLRIRDLEGALQVEKASQAEAVADLEIIKNEFKEVESAYEREKHNAQESFAKLnlleKEYFS 366
Cdd:TIGR02169 317 LEDAEERLAKLEAEIdkLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDEL----KDYRE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 367 KNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEELVMAKKHQAFLVETCENNVKELEsildsftvsgqwtsgihKDKD 446
Cdd:TIGR02169 393 KLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIK-----------------KQEW 455
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1034664281 447 KppsfsvvLERLRRTLTDYQNKLEDASNELNSMNDVKEKACNELD 491
Cdd:TIGR02169 456 K-------LEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELA 493
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
462-1266 |
4.14e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.14 E-value: 4.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 462 LTDYQNKLEDASNELNSMNDVKEKACNELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADREALISTLKVELQN 541
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 542 VLHCWEKEKAQAAQSESELQKLSQAFHKDAEEKltflhtlyqhlvagcvlikqpegmldkfswselcAVLQENVDALIAD 621
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKL----------------------------------EELKEELESLEAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 622 LNRANEKIRHLEyickNKSDTMRELQQTQEDTFTKVAEQIKAQESCWHRQKKELElqyselflEVQKRAQKFQEIAEKNM 701
Cdd:TIGR02168 360 LEELEAELEELE----SRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLE--------RLEDRRERLQQEIEELL 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 702 EKLNHIEKSHEQLVLENShfKKLLSQTQREQMSLLAacalmagalyplysrscALSTQRDFLQEQVNTFELFKLEIRTLA 781
Cdd:TIGR02168 428 KKLEEAELKELQAELEEL--EEELEELQEELERLEE-----------------ALEELREELEEAEQALDAAERELAQLQ 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 782 QALSTVEEKKQEEAKmkkktfkgliriFRKGVIAVLA-ANRLKILGQSCASLFTWMESFK--------EGIGMLVCTGEP 852
Cdd:TIGR02168 489 ARLDSLERLQENLEG------------FSEGVKALLKnQSGLSGILGVLSELISVDEGYEaaieaalgGRLQAVVVENLN 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 853 QDKhkfpkhqkeqlrclQALSWLTSSDLLAAiisSMAELQDVIGKADPNSR---ICGHLLIGAAKNSFAKLMDKISLVME 929
Cdd:TIGR02168 557 AAK--------------KAIAFLKQNELGRV---TFLPLDSIKGTEIQGNDreiLKNIEGFLGVAKDLVKFDPKLRKALS 619
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 930 ciPLHSSRSITyvekDSLVQ--RLAHGLHKVNTLALKYG--LRGHVPITKSTASLQKQILGFTQrlhaaevERRSLRLEV 1005
Cdd:TIGR02168 620 --YLLGGVLVV----DDLDNalELAKKLRPGYRIVTLDGdlVRPGGVITGGSAKTNSSILERRR-------EIEELEEKI 686
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 1006 TEFKRSVNEMKKELDKAQGLQMQL-NEFKQSKLITHE---KFESACEELNNALLREEQAQMLLNEQAQQLQELNYKLELH 1081
Cdd:TIGR02168 687 EELEEKIAELEKALAELRKELEELeEELEQLRKELEElsrQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEEL 766
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 1082 SSEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIHDAESALRMAAKDKECVANHMRAVENT 1161
Cdd:TIGR02168 767 EERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQ 846
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 1162 LHKVRDQISLswSAASRNDFTLQLPKLHLETFAMEGLKGGPEvvacqAMIKSFMDVYQLASTRIMTLEKEMTSHRSHIAA 1241
Cdd:TIGR02168 847 IEELSEDIES--LAAEIEELEELIEELESELEALLNERASLE-----EALALLRSELEELSEELRELESKRSELRRELEE 919
|
810 820
....*....|....*....|....*
gi 1034664281 1242 LKSELHTACLRENASLQSVERLPEA 1266
Cdd:TIGR02168 920 LREKLAQLELRLEGLEVRIDNLQER 944
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
29-575 |
5.91e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.38 E-value: 5.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 29 ETELDITDNLRKKLHWAKKEKLEITTKHN---AELASYESQIAKLRSEVEKGEALRQSLEyDLAVARKEAGLGRRAAEER 105
Cdd:PRK03918 182 EKFIKRTENIEELIKEKEKELEEVLREINeisSELPELREELEKLEKEVKELEELKEEIE-ELEKELESLEGSKRKLEEK 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 106 LAEAHRIQEKLCAQNSELQAKTNETEK---------AFQTSQQKWKEECRRFEHDLEERDNMIQNCNREYDLLMKEKSRL 176
Cdd:PRK03918 261 IRELEERIEELKKEIEELEEKVKELKElkekaeeyiKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERL 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 177 EKtLQEALEKHQREKNEMEShiRETALEEFRLQEEQWEAERRELQFIVQEQdtaVQNMHKKVEKLETEHMDCSDLLRRQT 256
Cdd:PRK03918 341 EE-LKKKLKELEKRLEELEE--RHELYEEAKAKKEELERLKKRLTGLTPEK---LEKELEELEKAKEEIEEEISKITARI 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 257 SELEfstQREERLRKEFEATT-------LRVRKLEENIEAE--RAAHLE-SKFNSEIIQL--RIRDLEGAL-QVEKA-SQ 322
Cdd:PRK03918 415 GELK---KEIKELKKAIEELKkakgkcpVCGRELTEEHRKEllEEYTAElKRIEKELKEIeeKERKLRKELrELEKVlKK 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 323 AEAVADLEIIKNEFKEVESayEREKHNAQESFAKLNLLE--KEYFSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQ 400
Cdd:PRK03918 492 ESELIKLKELAEQLKELEE--KLKKYNLEELEKKAEEYEklKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELE 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 401 EELVMAKKHQAFL----VETCENNVKELESILDSFTvsgqwtsgihKDKDKPPSfsvvLERLRRTLTDYQNKLEDASNEL 476
Cdd:PRK03918 570 EELAELLKELEELgfesVEELEERLKELEPFYNEYL----------ELKDAEKE----LEREEKELKKLEEELDKAFEEL 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 477 NSMNDVKEKACNELDSTKQKIDShtKNIKELQDKLADVNKELSHLHTKCADREALISTLKVELQNVLHcwEKEKAQAAQS 556
Cdd:PRK03918 636 AETEKRLEELRKELEELEKKYSE--EEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKE--ELEEREKAKK 711
|
570
....*....|....*....
gi 1034664281 557 ESELQKLSQAFHKDAEEKL 575
Cdd:PRK03918 712 ELEKLEKALERVEELREKV 730
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
22-510 |
1.66e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.84 E-value: 1.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 22 VKQILKNETELDITDNLRKKLHWAKKEkleittkhnAELASYESQIAKLRSEVEKGEALRQSLEYDLAVARKEAGLGRRA 101
Cdd:PTZ00121 1304 ADEAKKKAEEAKKADEAKKKAEEAKKK---------ADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKE 1374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 102 AEERLAEAHRIQEKLCAQNSELQAKTNETEKafQTSQQKWKEECRRFEHDLEERDNMIQNCNrEYDLLMKEKSRLEKTLQ 181
Cdd:PTZ00121 1375 EAKKKADAAKKKAEEKKKADEAKKKAEEDKK--KADELKKAAAAKKKADEAKKKAEEKKKAD-EAKKKAEEAKKADEAKK 1451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 182 EALEKHQREKNEMESHIRETALEEFRLQEEQWEAErrELQFIVQEQDTAVQNMHKKVE-KLETEHMDCSDLLRR--QTSE 258
Cdd:PTZ00121 1452 KAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKAD--EAKKKAEEAKKKADEAKKAAEaKKKADEAKKAEEAKKadEAKK 1529
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 259 LEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQ-LRIRDLEGALQVEKASQAEAVADLEIIKNEFK 337
Cdd:PTZ00121 1530 AEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKnMALRKAEEAKKAEEARIEEVMKLYEEEKKMKA 1609
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 338 EVESAYEREKHNAQE---------SFAKLNLLEKEYFSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEELVMAKK 408
Cdd:PTZ00121 1610 EEAKKAEEAKIKAEElkkaeeekkKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKK 1689
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 409 HQAFLVETCENNvKELESILDSFTVSGQWTSGIHKDKDKPpsfSVVLERLRRTLTDYQNKLEDASNELNSMNDVKEKACN 488
Cdd:PTZ00121 1690 AAEALKKEAEEA-KKAEELKKKEAEEKKKAEELKKAEEEN---KIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKE 1765
|
490 500
....*....|....*....|..
gi 1034664281 489 ELDSTKQKIDSHTKNIKELQDK 510
Cdd:PTZ00121 1766 EEKKAEEIRKEKEAVIEEELDE 1787
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
70-567 |
2.11e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.43 E-value: 2.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 70 LRSEVEKGEALRQSLEYDLAVARKEAGLGRRAAEERLAEAHRIQEKLCAQNSELQAKTNETEKAFQTSQQKWKEECRRFE 149
Cdd:pfam15921 262 LQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYE 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 150 HDLEERDNMIQNCNREY-------DLLMKEKSRLEKTLQEAL-EKHQREK-----------------------NEMESHI 198
Cdd:pfam15921 342 DKIEELEKQLVLANSELtearterDQFSQESGNLDDQLQKLLaDLHKREKelslekeqnkrlwdrdtgnsitiDHLRREL 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 199 RETALEEFRLqEEQWEAERRELQFIVQEQDTAVQNMHKKVEK---LETEHMDCSDLLRRQTSELEFSTQREERLRKEFEA 275
Cdd:pfam15921 422 DDRNMEVQRL-EALLKAMKSECQGQMERQMAAIQGKNESLEKvssLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSD 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 276 TTLRVRKLEENIEAERA--AHLESKFNSEIIQLR--------IRDLEGALQVEKASQAEAVADLEIIKNEFKEVESAYER 345
Cdd:pfam15921 501 LTASLQEKERAIEATNAeiTKLRSRVDLKLQELQhlknegdhLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQ 580
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 346 EKHNAQESFAKLNLLEKEYFSKNKKLNE-DIEEQKKviidlSKRLQYNEKSCSELQEELVMAKKHQAFLVETCENNVKEL 424
Cdd:pfam15921 581 HGRTAGAMQVEKAQLEKEINDRRLELQEfKILKDKK-----DAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQER 655
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 425 ESILDSFTVSGQWTSGIHKD--------KDKPPSFSVVLERLRRTLTDYQNKLEDASNELNSMNDVKEKAC-------NE 489
Cdd:pfam15921 656 DQLLNEVKTSRNELNSLSEDyevlkrnfRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMkvamgmqKQ 735
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 490 LDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADREALISTLKVELQN------VLHCWEKE-KAQAAQSESELQK 562
Cdd:pfam15921 736 ITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKmageleVLRSQERRlKEKVANMEVALDK 815
|
....*
gi 1034664281 563 LSQAF 567
Cdd:pfam15921 816 ASLQF 820
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
173-488 |
4.41e-06 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 51.05 E-value: 4.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 173 KSRLEKTLQEALEKHQreKNEMESHIRETALEEFRLQEEQWEAERRELQFIVQEQDTAVQNMHKKVEKLETEHMDCSDLl 252
Cdd:pfam07888 33 QNRLEECLQERAELLQ--AQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSAS- 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 253 rrqtseLEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEII 332
Cdd:pfam07888 110 ------SEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQT 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 333 KNEFKEVESAYEREKHNAQESFAKLNLLEKEYFSKNKKLNE------DIEEQKKVIIDLSKRLQYNEKSCSELQEEL--- 403
Cdd:pfam07888 184 EEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTahrkeaENEALLEELRSLQERLNASERKVEGLGEELssm 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 404 ------VMAKKHQAFLvETCENNVKELESILDSFTVSGQWTS-------GIHKDKDKPPSFSVVLERLRRTLTDYQNKLE 470
Cdd:pfam07888 264 aaqrdrTQAELHQARL-QAAQLTLQLADASLALREGRARWAQeretlqqSAEADKDRIEKLSAELQRLEERLQEERMERE 342
|
330
....*....|....*...
gi 1034664281 471 DASNELNsmndvKEKACN 488
Cdd:pfam07888 343 KLEVELG-----REKDCN 355
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
54-291 |
5.04e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.09 E-value: 5.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 54 TKHNAELASYESQIAKLRSEVEKGEALRQSLE---YDLAVARKEAGLGRRAAEERLAEAHRIQEKLCAQNSELQAKTNET 130
Cdd:COG1196 284 EEAQAEEYELLAELARLEQDIARLEERRRELEerlEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEA 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 131 EKAFQTSQQKWKEECRRFEHDLEERDNMIQNCNREYDLLmKEKSRLEKTLQEALEKHQREKNEMESHIRETALEefRLQE 210
Cdd:COG1196 364 EEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQL-EELEEAEEALLERLERLEEELEELEEALAELEEE--EEEE 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 211 EQWEAERRELQFIVQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAE 290
Cdd:COG1196 441 EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLR 520
|
.
gi 1034664281 291 R 291
Cdd:COG1196 521 G 521
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
295-553 |
5.57e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 50.70 E-value: 5.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 295 LESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEIIKNEFKEVESAyerekhnAQESFAKLNLLEKEYFSKNKKLNEd 374
Cdd:PRK05771 40 LSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEEL-------IKDVEEELEKIEKEIKELEEEISE- 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 375 IEEQKKVIIDLSKRLQYNEKSCSELQEELvmAKKH-QAFLVETCENNVKELESILDSFTVsgqwtSGIHKDKDKPPSFSV 453
Cdd:PRK05771 112 LENEIKELEQEIERLEPWGNFDLDLSLLL--GFKYvSVFVGTVPEDKLEELKLESDVENV-----EYISTDKGYVYVVVV 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 454 VLerlrrtltdyQNKLEDASNELNSmNDVKEKACNELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADreaLIS 533
Cdd:PRK05771 185 VL----------KELSDEVEEELKK-LGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLE---ELL 250
|
250 260
....*....|....*....|
gi 1034664281 534 TLKVELQNvlhcwEKEKAQA 553
Cdd:PRK05771 251 ALYEYLEI-----ELERAEA 265
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
120-541 |
1.06e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.02 E-value: 1.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 120 NSELQAKTNETEKAFQTSQQKWKE-ECRRFEHDLEERDNMIQNCNREYDLLMKEKSRLEKTLQEALEKHQR--------E 190
Cdd:TIGR04523 128 KLEKQKKENKKNIDKFLTEIKKKEkELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKlelllsnlK 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 191 KNEMESHIRETALEEFRLQEEQWEAERRELQFIVQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQTSELEFSTQREERLR 270
Cdd:TIGR04523 208 KKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELE 287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 271 KEFEatTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEIIKNEFKEVESAYEREKHNA 350
Cdd:TIGR04523 288 KQLN--QLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQREL 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 351 QESFAKLNLLEKEyfskNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEELVMAKKhqaflvetcENNVKELESILDS 430
Cdd:TIGR04523 366 EEKQNEIEKLKKE----NQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQ---------EKELLEKEIERLK 432
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 431 FTVSGQwTSGIHKDKDKPPSFSVVLERLRRTLTDYQNKLEDASNELNSMNDVKEKACNELDSTKQKIDSHTKNIKELQDK 510
Cdd:TIGR04523 433 ETIIKN-NSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEK 511
|
410 420 430
....*....|....*....|....*....|.
gi 1034664281 511 LADVNKELSHLHTKCADREALISTLKVELQN 541
Cdd:TIGR04523 512 VKDLTKKISSLKEKIEKLESEKKEKESKISD 542
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
236-798 |
1.20e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.06 E-value: 1.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 236 KKVEKLETEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEEniEAERAAHLESKFNSeiIQLRIRDLEGAL 315
Cdd:PRK03918 179 ERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEK--EVKELEELKEEIEE--LEKELESLEGSK 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 316 QVEKASQAEAVADLEIIKNEFKEVESAYEREKhnaqesfaKLNLLEKEYfsknKKLNEDIEEQKKVIIDLSKRLQYNEKS 395
Cdd:PRK03918 255 RKLEEKIRELEERIEELKKEIEELEEKVKELK--------ELKEKAEEY----IKLSEFYEEYLDELREIEKRLSRLEEE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 396 CSELQEELVMAKKHQAFLVETcENNVKELESILDSFTVSgqwtsgiHKDKDKPPSFSVVLERLRRTLTDYQnkLEDASNE 475
Cdd:PRK03918 323 INGIEERIKELEEKEERLEEL-KKKLKELEKRLEELEER-------HELYEEAKAKKEELERLKKRLTGLT--PEKLEKE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 476 LNSMNDVKEKACNELDSTKQKIDSHTKNIKELQDKLadvnKELSHLHTKCA---------DREALISTLKVELQNVlhcw 546
Cdd:PRK03918 393 LEELEKAKEEIEEEISKITARIGELKKEIKELKKAI----EELKKAKGKCPvcgrelteeHRKELLEEYTAELKRI---- 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 547 EKEKAQAAQSESELQKLSQAFHK--DAEEKLTFLHTLYQhlvagcvLIKQPEGMLDKFSWSELCA------VLQENVDAL 618
Cdd:PRK03918 465 EKELKEIEEKERKLRKELRELEKvlKKESELIKLKELAE-------QLKELEEKLKKYNLEELEKkaeeyeKLKEKLIKL 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 619 IADLNRANEKIRHLEYICKNKSDTMRELQQTQED--------------TFTKVAEQIKAQESCWhrqKKELELQYSELFL 684
Cdd:PRK03918 538 KGEIKSLKKELEKLEELKKKLAELEKKLDELEEElaellkeleelgfeSVEELEERLKELEPFY---NEYLELKDAEKEL 614
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 685 EV-QKRAQKFQEIAEKNMEKLNHIEKSHEQLVLENSHFKKLLSQTQ-----REQMSLLAACALMAGALYPLYSRSCALST 758
Cdd:PRK03918 615 EReEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEyeelrEEYLELSRELAGLRAELEELEKRREEIKK 694
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 1034664281 759 QRDFLQEQVNTFELFKLEIRTLAQALSTVEEKKQEEAKMK 798
Cdd:PRK03918 695 TLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYK 734
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
23-346 |
1.20e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.14 E-value: 1.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 23 KQILKNETELDITDNLRKKLHWAKK----EKLEITTKHNAELASYESQIAKLRSEVEKGEALRQSLEYDLAVARKEAGLG 98
Cdd:PTZ00121 1460 EEAKKKAEEAKKADEAKKKAEEAKKadeaKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEA 1539
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 99 RRAAEERLAEAHRIQEKLCAQNSELQAKTNETEKAFQTSQQKWKEECRRFEHDLEERDNMIQNCNREYDLLMKEKSRLEK 178
Cdd:PTZ00121 1540 KKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAK 1619
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 179 TLQEALEKHQREKNEMESHIRETA-----LEEFRLQEEQWEAERRELQFIVQEQDTAVQNMHKKVE---------KLETE 244
Cdd:PTZ00121 1620 IKAEELKKAEEEKKKVEQLKKKEAeekkkAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEdekkaaealKKEAE 1699
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 245 HMDCSDLLRRQTSElefSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSE----IIQLRIRDLEGALQVEKA 320
Cdd:PTZ00121 1700 EAKKAEELKKKEAE---EKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEekkkIAHLKKEEEKKAEEIRKE 1776
|
330 340
....*....|....*....|....*.
gi 1034664281 321 SQAeavadleIIKNEFKEVESAYERE 346
Cdd:PTZ00121 1777 KEA-------VIEEELDEEDEKRRME 1795
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
174-573 |
1.39e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 1.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 174 SRLEKTLQEaLEKHQREKNEMESHIRETALEEFRLQEEQWEAER-RELQFIVQEqdTAVQNMHKKVEKLETEHMDCSDLL 252
Cdd:TIGR02169 170 RKKEKALEE-LEEVEENIERLDLIIDEKRQQLERLRREREKAERyQALLKEKRE--YEGYELLKEKEALERQKEAIERQL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 253 RRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAEraahleskfnSEIIQLRIRDLEGALQVEKASQAEAVAdleii 332
Cdd:TIGR02169 247 ASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDL----------GEEEQLRVKEKIGELEAEIASLERSIA----- 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 333 knefkevesAYEREKHNAQESFAKLNLLEKEYFSKNKKLNEDIEEQKKVIIDLSKRLQynekscsELQEELvmakkhqaf 412
Cdd:TIGR02169 312 ---------EKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYA-------ELKEEL--------- 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 413 lvetcENNVKELESIldsftvsgqwtsgihkdkdkppsfSVVLERLRRTLTDYQNKLEDASNELNSMNDVKEKACNELDS 492
Cdd:TIGR02169 367 -----EDLRAELEEV------------------------DKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQR 417
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 493 TKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADREALISTLKVELqnvlhcwEKEKAQAAQSESELQKLSQAFHKDAE 572
Cdd:TIGR02169 418 LSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADL-------SKYEQELYDLKEEYDRVEKELSKLQR 490
|
.
gi 1034664281 573 E 573
Cdd:TIGR02169 491 E 491
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
100-630 |
2.00e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 2.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 100 RAAEERLAEAHRIQEKLCAQNSELQAKTNETEKA-FQTSQQKWKEECRRFEHDLEERDNMIQNCNREYDLLMKEKS---- 174
Cdd:COG4913 258 RELAERYAAARERLAELEYLRAALRLWFAQRRLElLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRgngg 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 175 RLEKTLQEALEKHQREKNEMEsHIRETALEEFRLQEEQWEAERRELQfivqeqdTAVQNMHKKVEKLETEHMDCSDLLRR 254
Cdd:COG4913 338 DRLEQLEREIERLERELEERE-RRRARLEALLAALGLPLPASAEEFA-------ALRAEAAALLEALEEELEALEEALAE 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 255 QTSELEFSTQREERLRKEFEAttLRVRKLeeNIEAeraahleskfnsEIIQLRiRDLEGALQVeKASQAEAVADLEIIKN 334
Cdd:COG4913 410 AEAALRDLRRELRELEAEIAS--LERRKS--NIPA------------RLLALR-DALAEALGL-DEAELPFVGELIEVRP 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 335 EFKEVESAYEREKHNaqesfAKLNLL-EKEYFSK-------NK--------KLNEDIEEQKKVIID---LSKRLQYNEKS 395
Cdd:COG4913 472 EEERWRGAIERVLGG-----FALTLLvPPEHYAAalrwvnrLHlrgrlvyeRVRTGLPDPERPRLDpdsLAGKLDFKPHP 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 396 CSE-LQEELvmakkHQAFLVETCEnNVKELESILDSFTVSGQ----WTSGIHKDKDKPPSFSVV--------------LE 456
Cdd:COG4913 547 FRAwLEAEL-----GRRFDYVCVD-SPEELRRHPRAITRAGQvkgnGTRHEKDDRRRIRSRYVLgfdnraklaaleaeLA 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 457 RLRRTLTDYQNKLEDASNELNSMNDVKE--KACNELDSTKQKIDSHTKNIKELQDKLADV---NKELSHLHTKCADREAL 531
Cdd:COG4913 621 ELEEELAEAEERLEALEAELDALQERREalQRLAEYSWDEIDVASAEREIAELEAELERLdasSDDLAALEEQLEELEAE 700
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 532 ISTLKVELQNVLHCWEKEKAQAAQSESELQKLSQAFHKDAEEKLTFLHTLYQHLVAGCVLIKQPEGMLDKfswselcavL 611
Cdd:COG4913 701 LEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELREN---------L 771
|
570
....*....|....*....
gi 1034664281 612 QENVDALIADLNRANEKIR 630
Cdd:COG4913 772 EERIDALRARLNRAEEELE 790
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
978-1149 |
2.32e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 2.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 978 ASLQKQILGFTQRLHAAEVERRSLRLEVTEFKRSVNEMKKELDKAQGlqmQLNEFKQSKLITHEKFESACEELNNALLRE 1057
Cdd:COG1196 242 EELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQA---EEYELLAELARLEQDIARLEERRRELEERL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 1058 EQAQM----LLNEQA---QQLQELNYKLELHSSEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRL 1130
Cdd:COG1196 319 EELEEelaeLEEELEeleEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAEL 398
|
170
....*....|....*....
gi 1034664281 1131 EENIHDAESALRMAAKDKE 1149
Cdd:COG1196 399 AAQLEELEEAEEALLERLE 417
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
46-284 |
2.70e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.88 E-value: 2.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 46 KKEKLEittkhnAELASYESQIAKLRSEVEKGEALRQsleydlAVARKEAGLGRR-AAEERLAEAH-RIQEK------LC 117
Cdd:PRK02224 476 RVEELE------AELEDLEEEVEEVEERLERAEDLVE------AEDRIERLEERReDLEELIAERReTIEEKreraeeLR 543
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 118 AQNSELQAKTNETEKAFQTSQQKwKEECRR----FEHDLEERDNMIQNCNREYDLLmKEKSRLEKTLQEALEKHQrEKNE 193
Cdd:PRK02224 544 ERAAELEAEAEEKREAAAEAEEE-AEEAREevaeLNSKLAELKERIESLERIRTLL-AAIADAEDEIERLREKRE-ALAE 620
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 194 MESHIRETaLEEFR-----LQEEQWEAERRELQFIVQEQDTAVQNMHKKVEKLETEHmdcsDLLRRQTSELEFSTQREER 268
Cdd:PRK02224 621 LNDERRER-LAEKRerkreLEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREER----DDLQAEIGAVENELEELEE 695
|
250
....*....|....*.
gi 1034664281 269 LRKEFEATTLRVRKLE 284
Cdd:PRK02224 696 LRERREALENRVEALE 711
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
23-545 |
2.94e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.89 E-value: 2.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 23 KQILKNETELDItdnLRKKLHWAKKEKL-EITTKHNAELASYESQIAKLRSEVEKGEALRQSLeydlavARKEAGLGRRA 101
Cdd:TIGR00606 279 KQMEKDNSELEL---KMEKVFQGTDEQLnDLYHNHQRTVREKERELVDCQRELEKLNKERRLL------NQEKTELLVEQ 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 102 AEERLaEAHRIQEKLCAQNSELQAKTNETEkafqtsqqkwkeeCRRFEHDLE---ERDNMIQNCNREYDLLMKEKSRLEK 178
Cdd:TIGR00606 350 GRLQL-QADRHQEHIRARDSLIQSLATRLE-------------LDGFERGPFserQIKNFHTLVIERQEDEAKTAAQLCA 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 179 TLQEALEKHQREKNEMESHIRETAlEEFRLQEEQWEAERRELQFIVQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQTSE 258
Cdd:TIGR00606 416 DLQSKERLKQEQADEIRDEKKGLG-RTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNS 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 259 LEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQL-------RIRDLEGALQVEKASQAEAVADLEI 331
Cdd:TIGR00606 495 LTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKdkmdkdeQIRKIKSRHSDELTSLLGYFPNKKQ 574
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 332 IKNEFKEVEsayeREKHNAQESFAKLNLLEKEYFSKNKKLNEDIEEQKKVIIDLSKRL------QYNEKSCSELQEELVM 405
Cdd:TIGR00606 575 LEDWLHSKS----KEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLfdvcgsQDEESDLERLKEEIEK 650
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 406 AKKHQAFLVETCENNVKELESILDSFTVSGQWTSGIHKDKDKPPSFSVVLERLRRTLTDyqnKLEDASNELNSMNDVKEK 485
Cdd:TIGR00606 651 SSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPD---KLKSTESELKKKEKRRDE 727
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 486 ACNELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADREALISTLKVELQNVLHC 545
Cdd:TIGR00606 728 MLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVC 787
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
59-518 |
3.12e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.50 E-value: 3.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 59 ELASYESQIAKLRSEVEKGEALRQSLEYDLAVARKEAGLGRRAAEERLAEAHR---IQEKLCAQNSELQAKTNETEKAFQ 135
Cdd:PRK02224 252 ELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLddaDAEAVEARREELEDRDEELRDRLE 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 136 ---TSQQKWKEECRRFEH---DLEERDNMIQNcnreydllmkEKSRLEKTLQ---EALEKHQREKNEMESHIRE------ 200
Cdd:PRK02224 332 ecrVAAQAHNEEAESLREdadDLEERAEELRE----------EAAELESELEearEAVEDRREEIEELEEEIEElrerfg 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 201 ---TALEEFRLQEEQWEAERRELQFIVQEQDTAVQNMHKKVEKLET-----------------EHMDCSDLLRRQTSELE 260
Cdd:PRK02224 402 dapVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEAlleagkcpecgqpvegsPHVETIEEDRERVEELE 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 261 fstQREERLRKEFEATTLRVRKLEENIEAERAAHlESKFNSEIIQLRIRDLEGALQvEKASQAE----AVADLEIIKNEF 336
Cdd:PRK02224 482 ---AELEDLEEEVEEVEERLERAEDLVEAEDRIE-RLEERREDLEELIAERRETIE-EKRERAEelreRAAELEAEAEEK 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 337 KEVESAYEREKHNAQESFAKLNllekeyfSKNKKLNEDIEEQKKVIIDLSKRLQYnEKSCSELQEELV----MAKKHQAF 412
Cdd:PRK02224 557 REAAAEAEEEAEEAREEVAELN-------SKLAELKERIESLERIRTLLAAIADA-EDEIERLREKREalaeLNDERRER 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 413 LVETCEnNVKELESILDSFTVSG------QWTSGIHKDKDKppsfsvvLERLRRTLTDYQNKLEDASNELNSMNDVKEKA 486
Cdd:PRK02224 629 LAEKRE-RKRELEAEFDEARIEEaredkeRAEEYLEQVEEK-------LDELREERDDLQAEIGAVENELEELEELRERR 700
|
490 500 510
....*....|....*....|....*....|..
gi 1034664281 487 cNELDSTKQKIDSHTKNIKELQDKLADVNKEL 518
Cdd:PRK02224 701 -EALENRVEALEALYDEAEELESMYGDLRAEL 731
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
174-799 |
4.18e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.04 E-value: 4.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 174 SRLEKTLQEALEKHQREKNEMESHIRETALEEFRLQEEQWEAER--RELQFIVQEQDTAVQNMHKKVEKLETEHMDCSDL 251
Cdd:pfam02463 165 SRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKalEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 252 LRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEA---ERAAHLESKFNSEIIQLRIRDlegaLQVEKASQAEAVAD 328
Cdd:pfam02463 245 LLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKlqeEELKLLAKEEEELKSELLKLE----RRKVDDEEKLKESE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 329 LEIIKNEFKEVESAYEREKHNAQESFAKLNLLEKEYFSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEELVMAKK 408
Cdd:pfam02463 321 KEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELK 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 409 HQAflvetcENNVKELESILDSFTVSGQwtsgihKDKDKPPSFSVVLERLRRTLTDYQNKLEDASNELNSMNDVKEKACN 488
Cdd:pfam02463 401 SEE------EKEAQLLLELARQLEDLLK------EEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELK 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 489 ELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADREALISTLKVELQNVLHCWEKEKAQAAQSESELQKLSQAFH 568
Cdd:pfam02463 469 KSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTA 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 569 KDAE-EKLTFLHTLYQHLVAGCVLIKQPEGMLDKFSWSELCAVLQENVDALIADLNRANEKIRHLEYICKNKSDTMRELQ 647
Cdd:pfam02463 549 VIVEvSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGI 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 648 -QTQEDTFTKVAEQIKAQESCWHRQKKELELQYSELFLEVQKRAQKFQEIAEKNMEKLNHIEKSHEQLVLENSHFKKlLS 726
Cdd:pfam02463 629 lKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKE-QR 707
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1034664281 727 QTQREQMSLLAACALMAGALYPLYSRScalSTQRDFLQEQVNTFELFKLEIRTlaQALSTVEEKKQEEAKMKK 799
Cdd:pfam02463 708 EKEELKKLKLEAEELLADRVQEAQDKI---NEELKLLKQKIDEEEEEEEKSRL--KKEEKEEEKSELSLKEKE 775
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
60-316 |
4.50e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 4.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 60 LASYESQIAKLRSEVEKGEALRQSLEydlavARKEAGLGRRAAEERLAEAHRIQEKLCAQNSELQAKTNETEKAFQTSQq 139
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALE-----AELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSD- 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 140 kwkeECRRFEHDLEERDNMIQNCNREYDLLMKEKSRLEKTLQEALEKHQR------EKNEMESHIRETALEEFRLQEEQW 213
Cdd:COG4913 686 ----DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDElqdrleAAEDLARLELRALLEERFAAALGD 761
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 214 EAERRELQFIVQEQDTAVQNMHKKVEKLETE--------HMDCSDLlrrqTSELEFSTQREERLRK-------EFEAttl 278
Cdd:COG4913 762 AVERELRENLEERIDALRARLNRAEEELERAmrafnrewPAETADL----DADLESLPEYLALLDRleedglpEYEE--- 834
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 1034664281 279 RVRK-LEENIEAERaAHLESKFNSEI--IQLRIRDLEGALQ 316
Cdd:COG4913 835 RFKElLNENSIEFV-ADLLSKLRRAIreIKERIDPLNDSLK 874
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
103-546 |
4.99e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.84 E-value: 4.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 103 EERLAEAHRIQEKLCAQNSELQAKTNETEKAFQTSQQKWKEECRRFEHDLEERDNMIQNCNREYDLLMKEKSRLEKTLQE 182
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 183 ALEKHQREKNEMESHIRETALEEFRLQEEQWEAERRELQFIVQEQDTAVQNMHKKVEKLETEHmdcSDLLRRQTSELEFS 262
Cdd:COG4717 128 LPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLAT---EEELQDLAEELEEL 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 263 TQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEIIKNEF------ 336
Cdd:COG4717 205 QQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVlflvlg 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 337 --KEVESAYEREKHNAQESFAKLNLLEKEYFSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEELVMAKKHQAFLv 414
Cdd:COG4717 285 llALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEEL- 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 415 eTCENNVKELESILDSFTVSG--QWTSGIHKDKDKppsfsvvlERLRRTLTDYQNKLEDASNELNSMNDV--KEKACNEL 490
Cdd:COG4717 364 -QLEELEQEIAALLAEAGVEDeeELRAALEQAEEY--------QELKEELEELEEQLEELLGELEELLEAldEEELEEEL 434
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 1034664281 491 DSTKQKIDSHTKNIKELQDKLADVNKELSHLHT--KCADREALISTLKVELQNVLHCW 546
Cdd:COG4717 435 EELEEELEELEEELEELREELAELEAELEQLEEdgELAELLQELEELKAELRELAEEW 492
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
20-565 |
5.00e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.71 E-value: 5.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 20 LDVKQILKNETELditdnlrKKLHWAKKEKLEITTKHNAELASYESQIAKLRSEVEKGEALRQSLEYDLAVARKeaglgr 99
Cdd:TIGR04523 114 NDKEQKNKLEVEL-------NKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEK------ 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 100 raaeerlaEAHRIQEKLCAQNSELQAKtneteKAFQTSQQKWKEECRRFEHDLEERDNMIQNCNREYDLLMKEKSRLEKT 179
Cdd:TIGR04523 181 --------EKLNIQKNIDKIKNKLLKL-----ELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTE 247
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 180 LQEALEKHQREKNEMESHIREtaleefrLQEEQWEAERRELQFIVQEQDtaVQNMHKKVEKLETEHMdcSDLLRRQTSEL 259
Cdd:TIGR04523 248 ISNTQTQLNQLKDEQNKIKKQ-------LSEKQKELEQNNKKIKELEKQ--LNQLKSEISDLNNQKE--QDWNKELKSEL 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 260 EFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEIIKNEFKEV 339
Cdd:TIGR04523 317 KNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDL 396
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 340 ESAYEREKHNAQESFAKLNLLEKEYFSKNK---KLNEDIEEQKKVIIDL-----SKRLQYN--EKSCSELQEELVMAKKH 409
Cdd:TIGR04523 397 ESKIQNQEKLNQQKDEQIKKLQQEKELLEKeieRLKETIIKNNSEIKDLtnqdsVKELIIKnlDNTRESLETQLKVLSRS 476
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 410 QAFLVETCENNVKEL---ESILDSFTVSGQWTSGIHKD-KDKPPSFSVVLERLRRTLTDYQNKLEDASNELNSMNDVKEK 485
Cdd:TIGR04523 477 INKIKQNLEQKQKELkskEKELKKLNEEKKELEEKVKDlTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKK 556
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 486 AC---------NELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADREALISTLKVELQNVLHCWEKEKAQAAQS 556
Cdd:TIGR04523 557 ENlekeideknKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNI 636
|
....*....
gi 1034664281 557 ESELQKLSQ 565
Cdd:TIGR04523 637 KSKKNKLKQ 645
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
47-732 |
5.42e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 5.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 47 KEKLEITTkhnAELASYESQIAKLRSEVEKGEALRQSLEYDL-AVARKEAGLGRRAAEERLAEAHRIQE--KLCAQNSEL 123
Cdd:TIGR02169 293 KEKIGELE---AEIASLERSIAEKERELEDAEERLAKLEAEIdKLLAEIEELEREIEEERKRRDKLTEEyaELKEELEDL 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 124 QAKTNETEKAFQTSQQKWKEECRRfehdleerdnmIQNCNREYDLLMKEKSRLEKTLQEALEKHQREKNEMEShiRETAL 203
Cdd:TIGR02169 370 RAELEEVDKEFAETRDELKDYREK-----------LEKLKREINELKRELDRLQEELQRLSEELADLNAAIAG--IEAKI 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 204 EEFrlqeeqwEAERRELQFIVQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQTSELefstqreERLRKEFEATTLRVRKL 283
Cdd:TIGR02169 437 NEL-------EEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKEL-------SKLQRELAEAEAQARAS 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 284 EENIEAERAAHLESKFNSEIIQLRIRDL-----EGALQVEKAsqAEAVADLEIIKNEFKEVES-AYEREKHNAQESFAKL 357
Cdd:TIGR02169 503 EERVRGGRAVEEVLKASIQGVHGTVAQLgsvgeRYATAIEVA--AGNRLNNVVVEDDAVAKEAiELLKRRKAGRATFLPL 580
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 358 NLLekeyfsKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSE----LQEELVM-----AKKHQA-FLVETCENnvkelesi 427
Cdd:TIGR02169 581 NKM------RDERRDLSILSEDGVIGFAVDLVEFDPKYEPAfkyvFGDTLVVedieaARRLMGkYRMVTLEG-------- 646
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 428 lDSFTVSGQWTSGihkdKDKPPSFSVVLERLRRTLTDYQNKLEDASNELNSMNDVKEKACNELDSTKQKIDSHTKNIKEL 507
Cdd:TIGR02169 647 -ELFEKSGAMTGG----SRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEI 721
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 508 QDKLADVNKELSHLHTKCADREALISTLKVELQNVlhcwekeKAQAAQSESELQKLSQAFHKDAEEkltflhtlyqhlva 587
Cdd:TIGR02169 722 EKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENV-------KSELKELEARIEELEEDLHKLEEA-------------- 780
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 588 gcvlIKQPEGMLDKFSWSElcavLQENVDALIADLNRANEKIRHLEYICKNKSdtmRELQQTQEDTFTKVAEQIKAQEsc 667
Cdd:TIGR02169 781 ----LNDLEARLSHSRIPE----IQAELSKLEEEVSRIEARLREIEQKLNRLT---LEKEYLEKEIQELQEQRIDLKE-- 847
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034664281 668 whrQKKELELQYSELflevQKRAQKFQEIAEKNMEKLNHIEKSHEQLVLENSHFKKLLSQTQREQ 732
Cdd:TIGR02169 848 ---QIKSIEKEIENL----NGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKI 905
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
11-348 |
1.13e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.57 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 11 DTQRLKIASLDvKQILKNETELDITDNLRKKLHWAKKEKLEITTKHNAELASYESQIAKLRSEVEKGEALR--------- 81
Cdd:PRK02224 380 EDRREEIEELE-EEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLeagkcpecg 458
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 82 QSLEYDLAVARKEaglgrrAAEERLAEAHRIQEKLCAQNSELQAKTNETEKAfqtsqqkwKEECRRFEHDLEERDNMIQn 161
Cdd:PRK02224 459 QPVEGSPHVETIE------EDRERVEELEAELEDLEEEVEEVEERLERAEDL--------VEAEDRIERLEERREDLEE- 523
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 162 cnreydLLMKEKSRLEKTlQEALEKHQREKNEMESHIRETAlEEFRLQEEQWEAERRELQFIVQEQdTAVQNMHKKVEKL 241
Cdd:PRK02224 524 ------LIAERRETIEEK-RERAEELRERAAELEAEAEEKR-EAAAEAEEEAEEAREEVAELNSKL-AELKERIESLERI 594
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 242 ETEHMDCSDL------LRRQTSEL-EFSTQREERLRKEFEattlRVRKLEENIEAERAAHLESKfnSEIIQLRIRDLEGA 314
Cdd:PRK02224 595 RTLLAAIADAedeierLREKREALaELNDERRERLAEKRE----RKRELEAEFDEARIEEARED--KERAEEYLEQVEEK 668
|
330 340 350
....*....|....*....|....*....|....
gi 1034664281 315 LQVEKASQAEAVADLEIIKNEFKEVESAYEREKH 348
Cdd:PRK02224 669 LDELREERDDLQAEIGAVENELEELEELRERREA 702
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
50-336 |
1.28e-04 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 45.83 E-value: 1.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 50 LEITTKHNAELasyESQIAKLRSEVEKGEALRQSLEYDLAVARKEAGLgrraAEERLAEAHRIQEKLCAQNSELQAKTNE 129
Cdd:pfam19220 127 LAAETEQNRAL---EEENKALREEAQAAEKALQRAEGELATARERLAL----LEQENRRLQALSEEQAAELAELTRRLAE 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 130 TEKAFQTSQQKWKEECRRFEHDLEERdnmiqncnreydllmkekSRLEKTLQEALEKHQREKNEM-----ESHIRETALE 204
Cdd:pfam19220 200 LETQLDATRARLRALEGQLAAEQAER------------------ERAEAQLEEAVEAHRAERASLrmkleALTARAAATE 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 205 EF---------RLQEEQWEAERRELQFIVqEQDTAvqnmHKKVEKLETEHMDcsdlLRRQTSELEFS----TQREERLRK 271
Cdd:pfam19220 262 QLlaearnqlrDRDEAIRAAERRLKEASI-ERDTL----ERRLAGLEADLER----RTQQFQEMQRAraelEERAEMLTK 332
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034664281 272 EFEATTLRVRKLEENIEA--ERAAHLESKFNSEIIQL--RIRDLEGALQVEKASQAEAVADLEIIKNEF 336
Cdd:pfam19220 333 ALAAKDAALERAEERIASlsDRIAELTKRFEVERAALeqANRRLKEELQRERAERALAQGALEIARESR 401
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
62-408 |
1.82e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.29 E-value: 1.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 62 SYESQIAKLRSEVEKGEALRQSLEYDLAVARKEAGLGRRAAEERLAEAHRIQEKlcAQNSELQAKTNETEKafQTSQQKW 141
Cdd:PTZ00121 1169 ARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAED--AKKAEAVKKAEEAKK--DAEEAKK 1244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 142 KEECRRFEHDLEERDNMIQNCNREYDLLMKEKSRLEKTLQEALEKHQREKNEMESHIREtALEEFRLQEEQWEAErrELQ 221
Cdd:PTZ00121 1245 AEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKK-ADEAKKKAEEAKKAD--EAK 1321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 222 FIVQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHlESKFNS 301
Cdd:PTZ00121 1322 KKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAD-EAKKKA 1400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 302 EIIQLRIRDLEGALQVEKAS-----QAEAVADLEIIKNEFKEVESAYEREKhNAQESFAKLNLLEK-EYFSKNKKLNEDI 375
Cdd:PTZ00121 1401 EEDKKKADELKKAAAAKKKAdeakkKAEEKKKADEAKKKAEEAKKADEAKK-KAEEAKKAEEAKKKaEEAKKADEAKKKA 1479
|
330 340 350
....*....|....*....|....*....|...
gi 1034664281 376 EEQKKViIDLSKRLQYNEKSCSELQEELVMAKK 408
Cdd:PTZ00121 1480 EEAKKA-DEAKKKAEEAKKKADEAKKAAEAKKK 1511
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1002-1247 |
2.07e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.82 E-value: 2.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 1002 RLE--VTEFKRSVNEMKKELDKAQGLQMQLNEFKQSKL-ITHEKFESACEELNNALLREEQAQMLLNEQAQQLQELNYKL 1078
Cdd:TIGR02168 190 RLEdiLNELERQLKSLERQAEKAERYKELKAELRELELaLLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 1079 ELHSSEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIHDAESALRMAAKDkecvanhmrav 1158
Cdd:TIGR02168 270 EELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEE----------- 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 1159 entLHKVRDQISLswSAASRNDFTLQLPKLHLETFAMEGLKGGPEvvacqamiksfmDVYQLASTRIMTLEKEMTSHRSH 1238
Cdd:TIGR02168 339 ---LAELEEKLEE--LKEELESLEAELEELEAELEELESRLEELE------------EQLETLRSKVAQLELQIASLNNE 401
|
....*....
gi 1034664281 1239 IAALKSELH 1247
Cdd:TIGR02168 402 IERLEARLE 410
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
67-562 |
3.22e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.21 E-value: 3.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 67 IAKLRSEVEKGEALRQSLEYDLAvarKEAGLGRRAAEERLAEAHRIQEKlcaqnselQAKTNETEKAFQTSQQKWKEECR 146
Cdd:pfam12128 236 IMKIRPEFTKLQQEFNTLESAEL---RLSHLHFGYKSDETLIASRQEER--------QETSAELNQLLRTLDDQWKEKRD 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 147 RFEHDLEERDNMIQNCNREYDLLMKEKSRLEKTLQEALEKHQRE----KNEMESHIRETALEEFRLQEEQWEAERRElQF 222
Cdd:pfam12128 305 ELNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQlpswQSELENLEERLKALTGKHQDVTAKYNRRR-SK 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 223 IVQEQDTAVQNMHKKVEKL----ETEHMDCSDLLRRQTSElefstqreerLRKEFEATTLRVRKLEENIEaERAAHL--- 295
Cdd:pfam12128 384 IKEQNNRDIAGIKDKLAKIrearDRQLAVAEDDLQALESE----------LREQLEAGKLEFNEEEYRLK-SRLGELklr 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 296 --------ESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEIIKNEFKEVESAYEREKHNAQESFAKLNLLEKEYFSK 367
Cdd:pfam12128 453 lnqatatpELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQ 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 368 NKKLNEDIEEQKKVIIDLSKRLQYNEKSC-SELQEELVMAKKHQAFLVETCENNVK------------ELESILDSFTVS 434
Cdd:pfam12128 533 AGTLLHFLRKEAPDWEQSIGKVISPELLHrTDLDPEVWDGSVGGELNLYGVKLDLKridvpewaaseeELRERLDKAEEA 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 435 GQWTSGIHKDKDKPPS-FSVVLERLRRTLTDYQNKLEDASNELNSMNDVKEK---ACNE--------LDSTKQKIDSHTK 502
Cdd:pfam12128 613 LQSAREKQAAAEEQLVqANGELEKASREETFARTALKNARLDLRRLFDEKQSekdKKNKalaerkdsANERLNSLEAQLK 692
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1034664281 503 -NIKELQDKLADVNKELSHLHT-KCADREALISTLKVELQNVLHCWEKEKAQAAQSESELQK 562
Cdd:pfam12128 693 qLDKKHQAWLEEQKEQKREARTeKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALET 754
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
457-1141 |
4.57e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.66 E-value: 4.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 457 RLRRTLTDYQnKLEDASNELnsmndvkEKACNELDSTKQKidshTKNIKELQDKLADVNKELSHLHTKCADREalISTLK 536
Cdd:TIGR02168 180 KLERTRENLD-RLEDILNEL-------ERQLKSLERQAEK----AERYKELKAELRELELALLVLRLEELREE--LEELQ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 537 VELQNVLHCWEKEKAQAAQSESELQKLSQAFHKDAEEKLTFLHTLYQHLVagcvLIKQPEGMLdkfswselcAVLQENVD 616
Cdd:TIGR02168 246 EELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN----EISRLEQQK---------QILRERLA 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 617 ALIADLNRANEKIRHLEyickNKSDTMRE---LQQTQEDTFTKVAEQIKAQESCWHRQKKELELQYSELFLEVQKRAQKF 693
Cdd:TIGR02168 313 NLERQLEELEAQLEELE----SKLDELAEelaELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 694 QEI---AEKNMEKLNHIEKSHEQLvleNSHFKKLLSQTQREQMSLLAAcalmagALYPLYSRSCALSTQRDFLQEQVNTF 770
Cdd:TIGR02168 389 AQLelqIASLNNEIERLEARLERL---EDRRERLQQEIEELLKKLEEA------ELKELQAELEELEEELEELQEELERL 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 771 ELFKLEIRTLAQALSTVEEKKQEEAKMKKKTFKGLIRIFR------KGVIAVLA-ANRLKILGQSCASLFTWMESFK--- 840
Cdd:TIGR02168 460 EEALEELREELEEAEQALDAAERELAQLQARLDSLERLQEnlegfsEGVKALLKnQSGLSGILGVLSELISVDEGYEaai 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 841 -----EGIGMLVCTGEPQDKhkfpkhqkeqlrclQALSWLTSSDLLAAiisSMAELQDVIGKADPNSR---ICGHLLIGA 912
Cdd:TIGR02168 540 eaalgGRLQAVVVENLNAAK--------------KAIAFLKQNELGRV---TFLPLDSIKGTEIQGNDreiLKNIEGFLG 602
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 913 AKNSFAKLMDKISLVMECIPLHSSRSITYVEKDSLVQRLAHGLHKV---NTLALKYGL--RGHVPITKSTASLQKQILGF 987
Cdd:TIGR02168 603 VAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVtldGDLVRPGGVitGGSAKTNSSILERRREIEEL 682
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 988 TQRLHAAEVERRSLRLEVTEFKRSVNEMKKELDKAQ----GLQMQLNEFKQSKLITHEKFESACEELNNALLREEQAQML 1063
Cdd:TIGR02168 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRkeleELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE 762
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 1064 LNEQAQQLQELNYKLELHSSEEADKNQ----------TLGEAVKSLSEAKMELRRKDQSLRQ-----------LNRHLTQ 1122
Cdd:TIGR02168 763 IEELEERLEEAEEELAEAEAEIEELEAqieqlkeelkALREALDELRAELTLLNEEAANLRErleslerriaaTERRLED 842
|
730
....*....|....*....
gi 1034664281 1123 LEQDKRRLEENIHDAESAL 1141
Cdd:TIGR02168 843 LEEQIEELSEDIESLAAEI 861
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
55-395 |
4.69e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.75 E-value: 4.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 55 KHNAELASYESQIaKLRSEVEKGEALRQSLEYDLAVARKEAGLGRRAAEERLAE-AHRIQEKLCAQNSELQAKTNETEKA 133
Cdd:PTZ00121 1085 EDNRADEATEEAF-GKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEdARKAEEARKAEDAKRVEIARKAEDA 1163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 134 FQTSQQKWKEECRRFEHDLE-------ERDNMIQNCNREYDLLMKEKSRLEKTLQEALEKHQREKNEMESHIRETALEEF 206
Cdd:PTZ00121 1164 RKAEEARKAEDAKKAEAARKaeevrkaEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAK 1243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 207 RLQEEQWEAERRELQFIVQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQTselefSTQREERLRKEFEATtlrvRKLEEN 286
Cdd:PTZ00121 1244 KAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAD-----EAKKAEEKKKADEAK----KKAEEA 1314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 287 IEAERAAHL--ESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEIIKNEFKEVESAYEREKHNAQESFAKlnlleKEY 364
Cdd:PTZ00121 1315 KKADEAKKKaeEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKK-----AEE 1389
|
330 340 350
....*....|....*....|....*....|.
gi 1034664281 365 FSKNKKLNEDIEEQKKVIIDLSKRLQYNEKS 395
Cdd:PTZ00121 1390 KKKADEAKKKAEEDKKKADELKKAAAAKKKA 1420
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
68-564 |
5.80e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 44.33 E-value: 5.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 68 AKLRSEVEKGEALRQSLEYDLAVA-------RKEAGLGRRAAEERLAEAHRIQEKL---CAQNSELQAKTNETE---KAF 134
Cdd:pfam05483 81 SKLYKEAEKIKKWKVSIEAELKQKenklqenRKIIEAQRKAIQELQFENEKVSLKLeeeIQENKDLIKENNATRhlcNLL 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 135 QTSQQKWKEECRRFEHDLEERDNMIQNCNREYDLLM---------KEKSRLEK--TLQEALEK--HQREKNEMESHIRET 201
Cdd:pfam05483 161 KETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMIlafeelrvqAENARLEMhfKLKEDHEKiqHLEEEYKKEINDKEK 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 202 ALEEFRLQEEQWEAERRELQFIVQEQDTAVQNMHKKVeKLETEHMDCS----DLLRRQTSELEFSTQR----EERLRKEF 273
Cdd:pfam05483 241 QVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKT-KLQDENLKELiekkDHLTKELEDIKMSLQRsmstQKALEEDL 319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 274 EATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIR----DLEGALQVEKASQAEAVADLEIIKNEFKEVESAYE---RE 346
Cdd:pfam05483 320 QIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEattcSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEemtKF 399
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 347 KHNAQESFAKLN--LLEKE-YFSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEELVMAKKHQAFLVETCENNVKE 423
Cdd:pfam05483 400 KNNKEVELEELKkiLAEDEkLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTE 479
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 424 LES---------------ILDSFTVSGQWTSGIHKDKDKPPSFSVVLERLRRTLTDYQNKLEDASNELNSMNDVKEKACN 488
Cdd:pfam05483 480 LEKeklknieltahcdklLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQ 559
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034664281 489 ELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADreaLISTLKVELQNVLHCWEKEKAQAAQSESELQKLS 564
Cdd:pfam05483 560 KGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNN---LKKQIENKNKNIEELHQENKALKKKGSAENKQLN 632
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
108-803 |
6.82e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 44.27 E-value: 6.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 108 EAHRIQEKLCAQNSELQAKTNETEKAFQTSQQKWKEECRRFEHDLEERDNMIQNCNREYDLLMKeksrLEKTLQeALEKH 187
Cdd:TIGR00606 203 QEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMK----LDNEIK-ALKSR 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 188 QREKNEMESHIRETALEEFRLQEEQWEAERRELQFIVQEQDTAVQNMHKKVEKLETEhmdcSDLLRRQTSELEFSTQR-- 265
Cdd:TIGR00606 278 KKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKE----RRLLNQEKTELLVEQGRlq 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 266 ------------------EERLRKEFE--------------ATTLRVRKLEEniEAERAAHLESKFNSEI---------I 304
Cdd:TIGR00606 354 lqadrhqehirardsliqSLATRLELDgfergpfserqiknFHTLVIERQED--EAKTAAQLCADLQSKErlkqeqadeI 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 305 QLRIRDLEGALQVEKASQAEAVADLEIIKNEFKEVESAYEREKHNAQE---SFAKLNLLEKEYFSKNKKLNEDIEEQKKV 381
Cdd:TIGR00606 432 RDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQElrkAERELSKAEKNSLTETLKKEVKSLQNEKA 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 382 IIDLSKRL------QYNEKSCSELQEELVMAKKHQAF--LVETCENNVKELESILDSFTVSGQWTSGIHKD-------KD 446
Cdd:TIGR00606 512 DLDRKLRKldqemeQLNHHTTTRTQMEMLTKDKMDKDeqIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKskeinqtRD 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 447 KPPSFSVVLERLRRTLTDYQNKLEDASNELNSMNDVKEKACN------ELDSTKQKIDSHTKNIKELQDKLADVNKELSH 520
Cdd:TIGR00606 592 RLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGsqdeesDLERLKEEIEKSSKQRAMLAGATAVYSQFITQ 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 521 LHTK---CADREALISTLKVELQNVLHCWEKEKAQAAQSESELQKLSQAFHKDAEEKLTFLHTLYQHLVAGCVLIKQPEG 597
Cdd:TIGR00606 672 LTDEnqsCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRN 751
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 598 MLDKFSWSelCAVLQENVDALIADLNRANEKIRHLEyICKNKSDTMRELQQTQEDTFTKVAEQIKAQESCwhrqkkELEL 677
Cdd:TIGR00606 752 KLQKVNRD--IQRLKNDIEEQETLLGTIMPEEESAK-VCLTDVTIMERFQMELKDVERKIAQQAAKLQGS------DLDR 822
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 678 QYSELFLEVQKRAQKFQEIAEKNMEKLNHIEKSHEQLvlenSHFKKLLSQTQREQMSL---LAACALMAGALYPLYSRSC 754
Cdd:TIGR00606 823 TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQI----QHLKSKTNELKSEKLQIgtnLQRRQQFEEQLVELSTEVQ 898
|
730 740 750 760
....*....|....*....|....*....|....*....|....*....
gi 1034664281 755 ALSTQRDFLQEQVNTFELFKLEIRTLAQALSTVEEKKQEEAKMKKKTFK 803
Cdd:TIGR00606 899 SLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIK 947
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
178-402 |
6.91e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 6.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 178 KTLQEALEKHQREKNEMESHIRETaleefrlqeeqwEAERRELQFIVQEQDTAVQNMHKKVEKLETEhmdcsdlLRRQTS 257
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAAL------------KKEEKALLKQLAALERRIAALARRIRALEQE-------LAALEA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 258 ELEFSTQREERLRKEFEATTLRVRKLEENIE-AERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAvADLEIIKNEF 336
Cdd:COG4942 84 ELAELEKEIAELRAELEAQKEELAELLRALYrLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQA-EELRADLAEL 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034664281 337 KEVESAYEREKhnaqesfAKLNLLEKEYFSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEE 402
Cdd:COG4942 163 AALRAELEAER-------AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1014-1184 |
7.03e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.16 E-value: 7.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 1014 EMKKELD--KAQGLQMQLNEFKQSKLITHEKFESACEELNNALLREEQAQMLLNEQAQQLQELNYKLELHSSEEADKNQT 1091
Cdd:COG1196 217 ELKEELKelEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 1092 LGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIHDAESALRMAAKDKECVANHMRAVENTLHKV---RDQ 1168
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAeaeLAE 376
|
170
....*....|....*.
gi 1034664281 1169 ISLSWSAASRNDFTLQ 1184
Cdd:COG1196 377 AEEELEELAEELLEAL 392
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
36-574 |
7.70e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.98 E-value: 7.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 36 DNLRKKLHWAKKEKLEITTKHNAELASYESQIAKLRSEVEKGEALRQSLEYDLAVARKEAGLGRRAAEERLAEAHRIQEK 115
Cdd:PTZ00121 1233 EEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAE 1312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 116 LCAQNSELQAKTNETEKAFQTSQQKWKE-----ECRRFEHDLEERDNMIQNCNREYDLLMKEKSRL----------EKTL 180
Cdd:PTZ00121 1313 EAKKADEAKKKAEEAKKKADAAKKKAEEakkaaEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKkadaakkkaeEKKK 1392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 181 QEALEKHQREKNEMESHIRETALEEFRLQEEQWEAERR----ELQFIVQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQT 256
Cdd:PTZ00121 1393 ADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKkkadEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKA 1472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 257 SELEFSTQ---REERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEIIK 333
Cdd:PTZ00121 1473 DEAKKKAEeakKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELK 1552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 334 N--------EFKEVESAyEREKHNAQESFAKLNLLEKEYFSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEELVM 405
Cdd:PTZ00121 1553 KaeelkkaeEKKKAEEA-KKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEE 1631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 406 AKKHQAfLVETCENNVKELESIldsftvsgqwtsgihkdKDKPPSFSVVLERLRRTLTDYQNKLEDASNElnsmNDVKEK 485
Cdd:PTZ00121 1632 KKKVEQ-LKKKEAEEKKKAEEL-----------------KKAEEENKIKAAEEAKKAEEDKKKAEEAKKA----EEDEKK 1689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 486 ACNELdstkQKIDSHTKNIKELQDKLADVNKELSHLHTKCADREALISTLKVELQNvlhcwEKEKAQAAQSESELQKLSQ 565
Cdd:PTZ00121 1690 AAEAL----KKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEE-----DKKKAEEAKKDEEEKKKIA 1760
|
....*....
gi 1034664281 566 AFHKDAEEK 574
Cdd:PTZ00121 1761 HLKKEEEKK 1769
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
99-277 |
9.80e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.57 E-value: 9.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 99 RRAAEERLAEAHRIQEKLCAQNSELQAKTNETEKAFQTSQQKWKEECRRFEHDlEERDNMIQNCNREYDLLMKEKSRLEK 178
Cdd:pfam17380 438 RRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAE-EQRRKILEKELEERKQAMIEEERKRK 516
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 179 TLQEALEKHQREKNEMEShiRETALEEFRLQEEQWEAERrelqfiVQEQDTAVQNMHKKVEKLETEHMdcsdlLRRQTSE 258
Cdd:pfam17380 517 LLEKEMEERQKAIYEEER--RREAEEERRKQQEMEERRR------IQEQMRKATEERSRLEAMERERE-----MMRQIVE 583
|
170
....*....|....*....
gi 1034664281 259 lefstqrEERLRKEFEATT 277
Cdd:pfam17380 584 -------SEKARAEYEATT 595
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
169-403 |
1.00e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 1.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 169 LMKEKSRLEKTLQEALEkHQREKNEMESHIRET-----ALEEFRLQEEQWEAERRELQFIVQEQDTA-VQNMHKKVEKLE 242
Cdd:COG4913 216 YMLEEPDTFEAADALVE-HFDDLERAHEALEDAreqieLLEPIRELAERYAAARERLAELEYLRAALrLWFAQRRLELLE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 243 TEhmdcsdlLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESkfnseiIQLRIRDLEGALQVEKASQ 322
Cdd:COG4913 295 AE-------LEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQ------LEREIERLERELEERERRR 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 323 AEAVADLEIIKNEFKEVESAYEREKHNAQESFAKLNLLEKEyfsknkkLNEDIEEQKKVIIDLSKRLQynekscsELQEE 402
Cdd:COG4913 362 ARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEA-------LEEALAEAEAALRDLRRELR-------ELEAE 427
|
.
gi 1034664281 403 L 403
Cdd:COG4913 428 I 428
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
448-666 |
1.04e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 448 PPSFSVVLERLRRTLTDYQNKLEDASNELNSMNDVKEKACNELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKCAD 527
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 528 REALISTLKVELQNVLhcwekEKAQAAQSESELQ-KLSQAFHKDAEEKLTFLHTLYQHLVAgcvLIKQPEGMLDKFswSE 606
Cdd:COG4942 95 LRAELEAQKEELAELL-----RALYRLGRQPPLAlLLSPEDFLDAVRRLQYLKYLAPARRE---QAEELRADLAEL--AA 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 607 LCAVLQENVDALIADLNRANEKIRHLEYICKNKSDTMRELQQTQEDTFTKVAEQIKAQES 666
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE 224
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
458-734 |
1.15e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.57 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 458 LRRTLTDYQNKLEDASNELNSMNDVK-------EKACNELDSTKQKIDShTKNIKElqDKLADVNKELSHLHTKCADREA 530
Cdd:pfam15921 108 LRQSVIDLQTKLQEMQMERDAMADIRrresqsqEDLRNQLQNTVHELEA-AKCLKE--DMLEDSNTQIEQLRKMMLSHEG 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 531 LIStlkvELQNVLHCWEKEKAQAAQSESELQKLS-QAFHKDAEEKLTFLHTLYQHLVAGCVLIKQPEGMLDKFSWSELCA 609
Cdd:pfam15921 185 VLQ----EIRSILVDFEEASGKKIYEHDSMSTMHfRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIEL 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 610 VLQENVDALIADLNRANEKIRHLeyicKNKSDTMRELQQTQEDTFTKVAEQIKAQESCWHRQKKELELQYSELFLEVQKR 689
Cdd:pfam15921 261 LLQQHQDRIEQLISEHEVEITGL----TEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREA 336
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1034664281 690 AQKFQEiaeknmeklnHIEKSHEQLVLENSHFKKllSQTQREQMS 734
Cdd:pfam15921 337 KRMYED----------KIEELEKQLVLANSELTE--ARTERDQFS 369
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
65-418 |
1.55e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.79 E-value: 1.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 65 SQIAKLRSEVEKGEALRQSLEYDLAVARKEAGLGRRAAEERLAEAHRIQEKLCAQNSELQAKTNETEKAFQTSQQKWK-- 142
Cdd:pfam05483 296 KELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEkn 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 143 ------------------EECRRFEHDLEERDNMIQNCNREYDLLMKEKSRLEKTLQEALEKHQR-----EKNEMESHIR 199
Cdd:pfam05483 376 edqlkiitmelqkksselEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQElifllQAREKEIHDL 455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 200 ETALEEFRLQEEQWEAERRELQFIVQEQDTAVQNMHKKVEKLETEH----MDCSDL---LRRQTSELEFSTQREERLRKE 272
Cdd:pfam05483 456 EIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENkeltQEASDMtleLKKHQEDIINCKKQEERMLKQ 535
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 273 FEATTLRVRKLEENIEAERAahlESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEIIKNEFKEVESAYEREKHNAQE 352
Cdd:pfam05483 536 IENLEEKEMNLRDELESVRE---EFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEE 612
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034664281 353 SFAKLNLLEKEYFSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEELVMAKKHQAFLVETCE 418
Cdd:pfam05483 613 LHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVE 678
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
990-1149 |
1.77e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.00 E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 990 RLHAAEVERRSLRLEVTEFKRSVNEMKKELDKAQ----GLQMQLNEFKQSKLITHEKFESACEELNNALLREEQAQMLLN 1065
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEELEaelaELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 1066 EQAQQLQELNYKLELHSSEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIHDAESALRMAA 1145
Cdd:COG1196 306 RLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELA 385
|
....
gi 1034664281 1146 KDKE 1149
Cdd:COG1196 386 EELL 389
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
975-1141 |
2.33e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.59 E-value: 2.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 975 KSTASLQKQILGFTQRLhaaeverRSLRLEVTEFKRSVNEMKKE----LDKAQgLQMQLNEfkqskliTHEKFESACEEL 1050
Cdd:PRK11281 80 EETEQLKQQLAQAPAKL-------RQAQAELEALKDDNDEETREtlstLSLRQ-LESRLAQ-------TLDQLQNAQNDL 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 1051 N--NALL-----REEQAQMLLNEQAQQLQELNykLELHSSEEADKN-----QTLGEAVKSLSEAKMELRRKD-------Q 1111
Cdd:PRK11281 145 AeyNSQLvslqtQPERAQAALYANSQRLQQIR--NLLKGGKVGGKAlrpsqRVLLQAEQALLNAQNDLQRKSlegntqlQ 222
|
170 180 190
....*....|....*....|....*....|
gi 1034664281 1112 SLRQLNRHLTQLEQDkrRLEENIHDAESAL 1141
Cdd:PRK11281 223 DLLQKQRDYLTARIQ--RLEHQLQLLQEAI 250
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
984-1149 |
2.40e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 2.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 984 ILGFT--QRLHAAEVERRSLRLEVTEFKRSVNEMKKELDKAQGLQMQLnefkqsklithekfeSACEELNNALLREEQAQ 1061
Cdd:COG4913 603 VLGFDnrAKLAALEAELAELEEELAEAEERLEALEAELDALQERREAL---------------QRLAEYSWDEIDVASAE 667
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 1062 MLLNEQAQQLQELnyklelhsseEADkNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIHDAESAL 1141
Cdd:COG4913 668 REIAELEAELERL----------DAS-SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRL 736
|
....*...
gi 1034664281 1142 RMAAKDKE 1149
Cdd:COG4913 737 EAAEDLAR 744
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
121-518 |
2.56e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 42.04 E-value: 2.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 121 SELQAKTNETEKAFQTSQQKWKEECRRFEHdLEERDNMIQNCNREydllMKEKSRLEKTLQEALEKHQREKNEMESHIRE 200
Cdd:pfam05557 30 IELEKKASALKRQLDRESDRNQELQKRIRL-LEKREAEAEEALRE----QAELNRLKKKYLEALNKKLNEKESQLADARE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 201 TALE-EFRLQEEQWEAERRELQFIVQ------------EQDTAVQNMHKKVEKLETEHMDCSDlLRRQTSELEFSTQREE 267
Cdd:pfam05557 105 VISClKNELSELRRQIQRAELELQSTnseleelqerldLLKAKASEAEQLRQNLEKQQSSLAE-AEQRIKELEFEIQSQE 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 268 R---LRKEFEATTLRVRKLEENIEA--ERAAHL-ESKFNSEIIQLRIRDLEGALQVEKASQAEAVA---DLEIIKNEFKE 338
Cdd:pfam05557 184 QdseIVKNSKSELARIPELEKELERlrEHNKHLnENIENKLLLKEEVEDLKRKLEREEKYREEAATlelEKEKLEQELQS 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 339 VESAYEREKHNAQESFA-----------KLNLLEKEYFSKN---------KKLNEDIEEQKKVIIDLSKRLQYNEKSCSE 398
Cdd:pfam05557 264 WVKLAQDTGLNLRSPEDlsrrieqlqqrEIVLKEENSSLTSsarqlekarRELEQELAQYLKKIEDLNKKLKRHKALVRR 343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 399 LQEELVMAKKHQAFLVETCENNVKELESILDSFTVSGQWTSG---IHKDKDKPPSFSVVLERLRRTLTDYQNKLEDASNE 475
Cdd:pfam05557 344 LQRRVLLLTKERDGYRAILESYDKELTMSNYSPQLLERIEEAedmTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLERE 423
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 1034664281 476 LNSMNdvKEKACNELDSTKQKIDSHTKNIKELQ---DKLADVNKEL 518
Cdd:pfam05557 424 LQALR--QQESLADPSYSKEEVDSLRRKLETLElerQRLREQKNEL 467
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
58-307 |
2.83e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 2.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 58 AELASYESQIAKLRSEVEKGEALRQSLEYDLAvarkeaglgrrAAEERLAEAHRIQEKLCAQNSELQAKTNETEKAFQTS 137
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLA-----------ALERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 138 QQKWKEEcrrfEHDLEERDNMIQNCNREYDLLMKEKSRLEKTLQEALEKHQREKNEmeshiRETALEEFRLQEEQWEAER 217
Cdd:COG4942 96 RAELEAQ----KEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPA-----RREQAEELRADLAELAALR 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 218 RELQFIVQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLES 297
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
250
....*....|
gi 1034664281 298 KFNSEIIQLR 307
Cdd:COG4942 247 GFAALKGKLP 256
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
23-570 |
2.94e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 2.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 23 KQILKNETELDITDNLRKKL-HWAKKEKLEI----TTKHNAELASYESQIAKLRSEVEKGEALRQSLEydlaVARKEAGL 97
Cdd:COG4913 262 ERYAAARERLAELEYLRAALrLWFAQRRLELleaeLEELRAELARLEAELERLEARLDALREELDELE----AQIRGNGG 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 98 GR--------RAAEERLAEAHRIQEKLCAQNSELQAKTNETEKAFQTSQQKWKEEcrrfehdLEERDNMIQNCNREYDLL 169
Cdd:COG4913 338 DRleqlereiERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAAL-------LEALEEELEALEEALAEA 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 170 MKEKSRlektLQEALEKHQREKNEME---SHIREtALEEFRLQ-EEQWEAERRELQFI-----VQEQDTAVQNmhkKVEK 240
Cdd:COG4913 411 EAALRD----LRRELRELEAEIASLErrkSNIPA-RLLALRDAlAEALGLDEAELPFVgelieVRPEEERWRG---AIER 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 241 letehmdcsdLLRRQTSELEFSTQREERLRKEFEATTLRVR----KLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQ 316
Cdd:COG4913 483 ----------VLGGFALTLLVPPEHYAAALRWVNRLHLRGRlvyeRVRTGLPDPERPRLDPDSLAGKLDFKPHPFRAWLE 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 317 VEKASQAEA--VADLEiiknEFKEVESA----------YEREKHNAQESF-----------AKLNLLEKEYfsknKKLNE 373
Cdd:COG4913 553 AELGRRFDYvcVDSPE----ELRRHPRAitragqvkgnGTRHEKDDRRRIrsryvlgfdnrAKLAALEAEL----AELEE 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 374 DIEEQKKVIIDLSKRLQYNEKSCSELQ--EELVMAKKHQAFLVETCENNVKELESILDSftvsgqwtsgihkdkdkppsf 451
Cdd:COG4913 625 ELAEAEERLEALEAELDALQERREALQrlAEYSWDEIDVASAEREIAELEAELERLDAS--------------------- 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 452 SVVLERLRRTLTDYQNKLEDASNELNSMNDvkekacnELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKCAD---- 527
Cdd:COG4913 684 SDDLAALEEQLEELEAELEELEEELDELKG-------EIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEerfa 756
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 1034664281 528 ---REALISTLKVELQNVLhcwEKEKAQAAQSESELQKLSQAFHKD 570
Cdd:COG4913 757 aalGDAVERELRENLEERI---DALRARLNRAEEELERAMRAFNRE 799
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
164-574 |
2.97e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.05 E-value: 2.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 164 REYDLLMKEKSRLEKTLQEALEKHQREKNEMESHIRETALEEfrlqeeqwEAERRELQFIVQEQDTAVQNMHKKVEKLET 243
Cdd:PTZ00121 1077 KDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAE--------EAKKKAEDARKAEEARKAEDARKAEEARKA 1148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 244 EHMDCSDLLRR--QTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEiiqlRIRDLEGALQVEKAS 321
Cdd:PTZ00121 1149 EDAKRVEIARKaeDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAE----EERKAEEARKAEDAK 1224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 322 QAEAVADLEIIKnefKEVESAYEREKHNAQESFAKLNLLEKEYFSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQE 401
Cdd:PTZ00121 1225 KAEAVKKAEEAK---KDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEK 1301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 402 ELVMAKKHQAFLVETCENNVKELEsildsftvsgqwtsgihKDKDKPPSFSVVLERLRRTLTDYQNKLEDASNELNSMND 481
Cdd:PTZ00121 1302 KKADEAKKKAEEAKKADEAKKKAE-----------------EAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE 1364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 482 VKEKACNELDSTKQKIDSHTKNIKELQ-----DKLADVNKELSHLHTKCADREALISTLKVELQnvlhcwEKEKAQAAQS 556
Cdd:PTZ00121 1365 KAEAAEKKKEEAKKKADAAKKKAEEKKkadeaKKKAEEDKKKADELKKAAAAKKKADEAKKKAE------EKKKADEAKK 1438
|
410
....*....|....*...
gi 1034664281 557 ESELQKLSQAFHKDAEEK 574
Cdd:PTZ00121 1439 KAEEAKKADEAKKKAEEA 1456
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
143-565 |
3.72e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 41.63 E-value: 3.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 143 EECRRFEHDLEER----DNMIQNCNREYDLLMKEKSRLEKTLQEAL--EKHQREKNEMESHIRETALEEFRLQEEQWEAE 216
Cdd:pfam05483 264 EESRDKANQLEEKtklqDENLKELIEKKDHLTKELEDIKMSLQRSMstQKALEEDLQIATKTICQLTEEKEAQMEELNKA 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 217 RRELQFIVQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEEnIEAERAAHLE 296
Cdd:pfam05483 344 KAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKK-ILAEDEKLLD 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 297 SKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEIIKNEFKEVESAYEREKHNAQESFAKLNLLEKEYFSKNKKLNEDIE 376
Cdd:pfam05483 423 EKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENK 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 377 EQKKVIIDLSKRLQYNEKSCSELQEELVMAKKHQAFLVETCENNVKELESILDSFTVSGQWTSgIHKDKDKPPSFSVVLE 456
Cdd:pfam05483 503 ELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVK-CKLDKSEENARSIEYE 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 457 RLRRtltdyqnkledasnelNSMNDVKEKACNELdstKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADREALISTLK 536
Cdd:pfam05483 582 VLKK----------------EKQMKILENKCNNL---KKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLE 642
|
410 420
....*....|....*....|....*....
gi 1034664281 537 VELQNVLHCWEkEKAQAAQSESELQKLSQ 565
Cdd:pfam05483 643 LELASAKQKFE-EIIDNYQKEIEDKKISE 670
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
994-1170 |
4.67e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.59 E-value: 4.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 994 AEVERRSLRLEvtEFKRSVNEMKKELDKAQGLqmqLNEFKQSKLITHEKFESACEELNNALLREEQAQMLLNEQAQQLQE 1073
Cdd:TIGR02169 674 AELQRLRERLE--GLKRELSSLQSELRRIENR---LDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSS 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 1074 LNYKLELHSSEEADKNQTLGEAVKSLSEAKMEL-----RRKDQSLRQLNRHLTQLEQDKRRLEENIHDAESALRMAAKDK 1148
Cdd:TIGR02169 749 LEQEIENVKSELKELEARIEELEEDLHKLEEALndleaRLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEK 828
|
170 180
....*....|....*....|..
gi 1034664281 1149 ECVANHMRAVENTLHKVRDQIS 1170
Cdd:TIGR02169 829 EYLEKEIQELQEQRIDLKEQIK 850
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
973-1146 |
4.85e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 4.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 973 ITKSTASLQKQILGFTQRLHAAEVERRSLRLEVTEFKRSVNEMKKELDKAQG-LQMQLNEFKQSKLITHEKFESACEELN 1051
Cdd:COG4942 53 LLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEeLAELLRALYRLGRQPPLALLLSPEDFL 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 1052 ---------NALLREEQAQML-LNEQAQQLQELNYKLELHSSEEADKNQTLGEAVKSLSEAKME----LRRKDQSLRQLN 1117
Cdd:COG4942 133 davrrlqylKYLAPARREQAEeLRADLAELAALRAELEAERAELEALLAELEEERAALEALKAErqklLARLEKELAELA 212
|
170 180
....*....|....*....|....*....
gi 1034664281 1118 RHLTQLEQDKRRLEENIHDAESALRMAAK 1146
Cdd:COG4942 213 AELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
38-217 |
5.41e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 5.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 38 LRKKLHWAKKEKLEITTKHNaELASYESQIAKLRSEVEKGEALRQSLEYdlAVARKEAGLGRRAAEERLAEAHRIQEKLC 117
Cdd:COG4717 76 LEEELKEAEEKEEEYAELQE-ELEELEEELEELEAELEELREELEKLEK--LLQLLPLYQELEALEAELAELPERLEELE 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 118 AQNSELQAKTNETEKAFQTSQQKWKEECRRFEHDLEERDNMIQNCNREYDLLMKEKSRLEKTLQEALEKHQREKNEMESH 197
Cdd:COG4717 153 ERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQL 232
|
170 180
....*....|....*....|
gi 1034664281 198 irETALEEFRLQEEQWEAER 217
Cdd:COG4717 233 --ENELEAAALEERLKEARL 250
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
455-528 |
5.98e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.58 E-value: 5.98e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1034664281 455 LERLRRTLTDYQNKLEDASNELNSMNDVKEKACNELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADR 528
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGER 91
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
978-1134 |
5.99e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.91 E-value: 5.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 978 ASLQKQILGFTQRLHAAEVERRSLRLEVTEFKRSVNEMKKELDKAQGLQMQLNEFKQSKLITHEkfesaceelnnallrE 1057
Cdd:COG1579 34 AELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEYEALQKE---------------I 98
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1034664281 1058 EQAQMLLNEQAQQLQELNYKLELHSSEEADKNQTLGEAVKSLSEAKMELrrkDQSLRQLNRHLTQLEQDKRRLEENI 1134
Cdd:COG1579 99 ESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAEL---DEELAELEAELEELEAEREELAAKI 172
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
328-517 |
7.60e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 40.81 E-value: 7.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 328 DLEIIKNEFKEVESAYEREkhnAQESFAKLNLLEKEYF------SKNKKLNedieeqkKVIIDLSKRLQYNEKSCSELQE 401
Cdd:TIGR01612 1545 DSEIIIKEIKDAHKKFILE---AEKSEQKIKEIKKEKFrieddaAKNDKSN-------KAAIDIQLSLENFENKFLKISD 1614
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 402 elvMAKKHQAFLVETcennvKELESILDSFTVSGQWTSgIHKDKDKPPSFSVVLERLRrtltDYQNKLEDASNELNSMNd 481
Cdd:TIGR01612 1615 ---IKKKINDCLKET-----ESIEKKISSFSIDSQDTE-LKENGDNLNSLQEFLESLK----DQKKNIEDKKKELDELD- 1680
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1034664281 482 vkekacNELDSTKQKIDSHTKN----IKELQDKLADVNKE 517
Cdd:TIGR01612 1681 ------SEIEKIEIDVDQHKKNyeigIIEKIKEIAIANKE 1714
|
|
| WEMBL |
pfam05701 |
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ... |
271-562 |
8.20e-03 |
|
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".
Pssm-ID: 461718 [Multi-domain] Cd Length: 562 Bit Score: 40.40 E-value: 8.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 271 KEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLE------------GALQVEKASQAEAVADLEIIKNEFKE 338
Cdd:pfam05701 70 EELESTKRLIEELKLNLERAQTEEAQAKQDSELAKLRVEEMEqgiadeasvaakAQLEVAKARHAAAVAELKSVKEELES 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 339 VESAY-----ERE--KHNAQESFAKLNLLEKEYFSKNKKLNE-------------DIEEQK--------KVIIDLSKRLQ 390
Cdd:pfam05701 150 LRKEYaslvsERDiaIKRAEEAVSASKEIEKTVEELTIELIAtkeslesahaahlEAEEHRigaalareQDKLNWEKELK 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 391 YNEKSCSELQEELVMAKKHQAFLvETCENNVKELESILDSFTVS--GQWTSGIHKDKDKPPSFSVVLERLRRTLTDYQNK 468
Cdd:pfam05701 230 QAEEELQRLNQQLLSAKDLKSKL-ETASALLLDLKAELAAYMESklKEEADGEGNEKKTSTSIQAALASAKKELEEVKAN 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 469 LEDASNELNSMNDV---------KEKAcnELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADREALISTLKVEL 539
Cdd:pfam05701 309 IEKAKDEVNCLRVAaaslrseleKEKA--ELASLRQREGMASIAVSSLEAELNRTKSEIALVQAKEKEAREKMVELPKQL 386
|
330 340
....*....|....*....|...
gi 1034664281 540 QNVLHCWEKEKAQAAQSESELQK 562
Cdd:pfam05701 387 QQAAQEAEEAKSLAQAAREELRK 409
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
313-566 |
8.82e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.20 E-value: 8.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 313 GALQVEKASQAEAVADLEIIKNEFKEVESAYEREKHNAQESFAKLNLLEKEYfsknKKLNEDIEEQKKVIIDLSKRLQYN 392
Cdd:COG3883 2 LALALAAPTPAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEY----NELQAELEALQAEIDKLQAEIAEA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 393 EKSCSELQEELvmakKHQAFLVETCENNVKELESILDSftvsgqwtsgihkdkdkpPSFSVVLERL--RRTLTDYQNKLe 470
Cdd:COG3883 78 EAEIEERREEL----GERARALYRSGGSVSYLDVLLGS------------------ESFSDFLDRLsaLSKIADADADL- 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034664281 471 dasneLNSMNDVKEKACNELDSTKQKIDSHTKNIKELQDKLADVNKELshlhtkcADREALISTLKVELQNVLHCWEKEK 550
Cdd:COG3883 135 -----LEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQ-------AEQEALLAQLSAEEAAAEAQLAELE 202
|
250
....*....|....*.
gi 1034664281 551 AQAAQSESELQKLSQA 566
Cdd:COG3883 203 AELAAAEAAAAAAAAA 218
|
|
| |
