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Conserved domains on  [gi|1034584001|ref|XP_016875932|]
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fibronectin type-III domain-containing protein 3A isoform X3 [Homo sapiens]

Protein Classification

fibronectin type III domain-containing protein( domain architecture ID 10047009)

fibronectin type III (FN3) domain-containing protein may be involved in specific interactions with other molecules through its FN3 domain, similar to human neural cell adhesion molecule (NCAM) and sidekick cell adhesion molecule 2 (SDK2)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
466-855 4.53e-20

Fibronectin type 3 domain [General function prediction only];


:

Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 95.84  E-value: 4.53e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  466 APSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDG-----EDLAYTVKNLRRSTKYKFKV 540
Cdd:COG3401    130 AVAGGAATAGTYALGAGLYGVDGANASGTTASSVAGAGVVVSPDTSATAAVATTSltvtsTTLVDGGGDIEPGTTYYYRV 209

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  541 IAYNSEGKSNPSEVVEFTTCPDKPGIPVKPSVKGkIHSHSFKITWDPPKDNGgatINKYVVEMAEGSNGnKWEMIYSGAT 620
Cdd:COG3401    210 AATDTGGESAPSNEVSVTTPTTPPSAPTGLTATA-DTPGSVTLSWDPVTESD---ATGYRVYRSNSGDG-PFTKVATVTT 284

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  621 REHLCDRLNPGCFYRLRVYCI-SDGGQSAVSESLLVQTPAVPPGPclPPRLQGRPKA-KEIQLRWGPPLvdgGSPISCYS 698
Cdd:COG3401    285 TSYTDTGLTNGTTYYYRVTAVdAAGNESAPSNVVSVTTDLTPPAA--PSGLTATAVGsSSITLSWTASS---DADVTGYN 359

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  699 VEMSPIEKDEPREVYQG-SEVECTVSSLLPGKTYSFRLRAANKMG-FGPFSEKCDITTAPGPPDQcKPPQVTCRSATCAQ 776
Cdd:COG3401    360 VYRSTSGGGTYTKIAETvTTTSYTDTGLTPGTTYYYKVTAVDAAGnESAPSEEVSATTASAASGE-SLTASVDAVPLTDV 438

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  777 VNWEVPLSNGTDvTEYRLEWGGVEGSMQICYCGPGLSYE-IKGLSPATTYYCRVQALSVVGAGPFSEVVACVTPPSVPGI 855
Cdd:COG3401    439 AGATAAASAASN-PGVSAAVLADGGDTGNAVPFTTTSSTvTATTTDTTTANLSVTTGSLVGGSGASSVTNSVSVIGASAA 517
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 371-462 2.10e-13

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


:

Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 66.75  E-value: 2.10e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  371 PDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEW-DEGKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDY 449
Cdd:cd00063      1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYrEKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGG 80

                           90
                   ....*....|...
gi 1034584001  450 GTSGFSEEVLYYT 462
Cdd:cd00063     81 GESPPSESVTVTT 93
FN3 super family cl27307
Fibronectin type 3 domain [General function prediction only];
811-971 4.92e-12

Fibronectin type 3 domain [General function prediction only];


The actual alignment was detected with superfamily member COG3401:

Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 70.03  E-value: 4.92e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  811 GLSYEIKGLSPATTYYCRVQALSVVGAGPFS---EVVACVTPPSVPGIVTcLQEISDDEIEnphyspstclaISWEKPCD 887
Cdd:COG3401    191 TLVDGGGDIEPGTTYYYRVAATDTGGESAPSnevSVTTPTTPPSAPTGLT-ATADTPGSVT-----------LSWDPVTE 258

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  888 HGseILAYSI-----DFGDKQSLTVGKVTSYIINNLQPDTTYRIRIQALNSLG-AGPFSHMIKLKTKPLPPDPPR-LECV 960
Cdd:COG3401    259 SD--ATGYRVyrsnsGDGPFTKVATVTTTSYTDTGLTNGTTYYYRVTAVDAAGnESAPSNVVSVTTDLTPPAAPSgLTAT 336

                          170
                   ....*....|.
gi 1034584001  961 AFSHQNLKLKW 971
Cdd:COG3401    337 AVGSSSITLSW 347
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 267-366 2.12e-09

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


:

Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 55.58  E-value: 2.12e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  267 SNIVKPVASDIQARTVVLTWSPPsslingetdESSVPELYGYEVLISSTGKDGKYK-SVYVGEETNITLNDLKPAMDYHA 345
Cdd:cd00063      2 SPPTNLRVTDVTSTSVTLSWTPP---------EDDGGPITGYVVEYREKGSGDWKEvEVTPGSETSYTLTGLKPGTEYEF 72

                           90       100
                   ....*....|....*....|.
gi 1034584001  346 KVQAEYNSIKGTPSEAEIFTT 366
Cdd:cd00063     73 RVRAVNGGGESPPSESVTVTT 93
 
Name Accession Description Interval E-value
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
466-855 4.53e-20

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 95.84  E-value: 4.53e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  466 APSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDG-----EDLAYTVKNLRRSTKYKFKV 540
Cdd:COG3401    130 AVAGGAATAGTYALGAGLYGVDGANASGTTASSVAGAGVVVSPDTSATAAVATTSltvtsTTLVDGGGDIEPGTTYYYRV 209

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  541 IAYNSEGKSNPSEVVEFTTCPDKPGIPVKPSVKGkIHSHSFKITWDPPKDNGgatINKYVVEMAEGSNGnKWEMIYSGAT 620
Cdd:COG3401    210 AATDTGGESAPSNEVSVTTPTTPPSAPTGLTATA-DTPGSVTLSWDPVTESD---ATGYRVYRSNSGDG-PFTKVATVTT 284

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  621 REHLCDRLNPGCFYRLRVYCI-SDGGQSAVSESLLVQTPAVPPGPclPPRLQGRPKA-KEIQLRWGPPLvdgGSPISCYS 698
Cdd:COG3401    285 TSYTDTGLTNGTTYYYRVTAVdAAGNESAPSNVVSVTTDLTPPAA--PSGLTATAVGsSSITLSWTASS---DADVTGYN 359

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  699 VEMSPIEKDEPREVYQG-SEVECTVSSLLPGKTYSFRLRAANKMG-FGPFSEKCDITTAPGPPDQcKPPQVTCRSATCAQ 776
Cdd:COG3401    360 VYRSTSGGGTYTKIAETvTTTSYTDTGLTPGTTYYYKVTAVDAAGnESAPSEEVSATTASAASGE-SLTASVDAVPLTDV 438

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  777 VNWEVPLSNGTDvTEYRLEWGGVEGSMQICYCGPGLSYE-IKGLSPATTYYCRVQALSVVGAGPFSEVVACVTPPSVPGI 855
Cdd:COG3401    439 AGATAAASAASN-PGVSAAVLADGGDTGNAVPFTTTSSTvTATTTDTTTANLSVTTGSLVGGSGASSVTNSVSVIGASAA 517
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 371-462 2.10e-13

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 66.75  E-value: 2.10e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  371 PDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEW-DEGKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDY 449
Cdd:cd00063      1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYrEKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGG 80

                           90
                   ....*....|...
gi 1034584001  450 GTSGFSEEVLYYT 462
Cdd:cd00063     81 GESPPSESVTVTT 93
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 467-559 2.29e-13

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 66.75  E-value: 2.29e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  467 PSMPASPVLTKAGITWLSLQWSKPSGTPSdEGISYILEMEEETSGYGFK-PKYDGEDLAYTVKNLRRSTKYKFKVIAYNS 545
Cdd:cd00063      1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGG-PITGYVVEYREKGSGDWKEvEVTPGSETSYTLTGLKPGTEYEFRVRAVNG 79

                           90
                   ....*....|....
gi 1034584001  546 EGKSNPSEVVEFTT 559
Cdd:cd00063     80 GGESPPSESVTVTT 93
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
811-971 4.92e-12

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 70.03  E-value: 4.92e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  811 GLSYEIKGLSPATTYYCRVQALSVVGAGPFS---EVVACVTPPSVPGIVTcLQEISDDEIEnphyspstclaISWEKPCD 887
Cdd:COG3401    191 TLVDGGGDIEPGTTYYYRVAATDTGGESAPSnevSVTTPTTPPSAPTGLT-ATADTPGSVT-----------LSWDPVTE 258

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  888 HGseILAYSI-----DFGDKQSLTVGKVTSYIINNLQPDTTYRIRIQALNSLG-AGPFSHMIKLKTKPLPPDPPR-LECV 960
Cdd:COG3401    259 SD--ATGYRVyrsnsGDGPFTKVATVTTTSYTDTGLTNGTTYYYRVTAVDAAGnESAPSNVVSVTTDLTPPAAPSgLTAT 336

                          170
                   ....*....|.
gi 1034584001  961 AFSHQNLKLKW 971
Cdd:COG3401    337 AVGSSSITLSW 347
fn3 pfam00041
Fibronectin type III domain;
865-940 2.25e-11

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 60.89  E-value: 2.25e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  865 DEIENPHYSP--STCLAISWEKPCDHGSEILAYSIDF------GDKQSLTVGKVT-SYIINNLQPDTTYRIRIQALNSLG 935
Cdd:pfam00041    1 SAPSNLTVTDvtSTSLTVSWTPPPDGNGPITGYEVEYrpknsgEPWNEITVPGTTtSVTLTGLKPGTEYEVRVQAVNGGG 80


                   ....*
gi 1034584001  936 AGPFS 940
Cdd:pfam00041   81 EGPPS 85
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 875-947 8.17e-11

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 59.43  E-value: 8.17e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  875 STCLAISWEKPCDHGSEILAYSIDFGDKQS-------LTVGKVTSYIINNLQPDTTYRIRIQALNSLGAGPFSHMIKLKT 947
Cdd:cd00063     14 STSVTLSWTPPEDDGGPITGYVVEYREKGSgdwkeveVTPGSETSYTLTGLKPGTEYEFRVRAVNGGGESPPSESVTVTT 93
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 756-838 1.02e-09

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 56.08  E-value: 1.02e-09
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001   756 PGPPdqcKPPQVTCRSATCAQVNWEVPLSNGTD--VTEYRLEWGGVEGSMQICYCGPG-LSYEIKGLSPATTYYCRVQAL 832
Cdd:smart00060    1 PSPP---SNLRVTDVTSTSVTLSWEPPPDDGITgyIVGYRVEYREEGSEWKEVNVTPSsTSYTLTGLKPGTEYEFRVRAV 77


                    ....*.
gi 1034584001   833 SVVGAG 838
Cdd:smart00060   78 NGAGEG 83
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 267-366 2.12e-09

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 55.58  E-value: 2.12e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  267 SNIVKPVASDIQARTVVLTWSPPsslingetdESSVPELYGYEVLISSTGKDGKYK-SVYVGEETNITLNDLKPAMDYHA 345
Cdd:cd00063      2 SPPTNLRVTDVTSTSVTLSWTPP---------EDDGGPITGYVVEYREKGSGDWKEvEVTPGSETSYTLTGLKPGTEYEF 72

                           90       100
                   ....*....|....*....|.
gi 1034584001  346 KVQAEYNSIKGTPSEAEIFTT 366
Cdd:cd00063     73 RVRAVNGGGESPPSESVTVTT 93
fn3 pfam00041
Fibronectin type III domain;
765-841 2.60e-09

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 55.11  E-value: 2.60e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  765 PQVTCRSATCAQVNWEVPLSNGTDVTEYRLEW---GGVEGSMQICYCGPGLSYEIKGLSPATTYYCRVQALSVVGAGPFS 841
Cdd:pfam00041    6 LTVTDVTSTSLTVSWTPPPDGNGPITGYEVEYrpkNSGEPWNEITVPGTTTSVTLTGLKPGTEYEVRVQAVNGGGEGPPS 85
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 371-452 7.95e-09

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 53.39  E-value: 7.95e-09
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001   371 PDIPNPPRIANRTKNSLTLQWKAPSDNG--SKIQNFVLEWDEGKGNGEFCQCyMGSQKQFKITKLSPAMGCKFRLSARND 448
Cdd:smart00060    1 PSPPSNLRVTDVTSTSVTLSWEPPPDDGitGYIVGYRVEYREEGSEWKEVNV-TPSSTSYTLTGLKPGTEYEFRVRAVNG 79


                    ....
gi 1034584001   449 YGTS 452
Cdd:smart00060   80 AGEG 83
fn3 pfam00041
Fibronectin type III domain;
374-455 1.30e-08

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 52.80  E-value: 1.30e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  374 PNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWdEGKGNGEFCQCYM--GSQKQFKITKLSPAMGCKFRLSARNDYGT 451
Cdd:pfam00041    3 PSNLTVTDVTSTSLTVSWTPPPDGNGPITGYEVEY-RPKNSGEPWNEITvpGTTTSVTLTGLKPGTEYEVRVQAVNGGGE 81


                   ....
gi 1034584001  452 SGFS 455
Cdd:pfam00041   82 GPPS 85
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 875-937 3.31e-08

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 51.85  E-value: 3.31e-08
                            10        20        30        40        50        60        70
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001   875 STCLAISWEKPCDHG--SEILAYSIDFGDKQSL-----TVGKVTSYIINNLQPDTTYRIRIQALNSLGAG 937
Cdd:smart00060   14 STSVTLSWEPPPDDGitGYIVGYRVEYREEGSEwkevnVTPSSTSYTLTGLKPGTEYEFRVRAVNGAGEG 83
fn3 pfam00041
Fibronectin type III domain;
272-359 4.35e-07

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 48.57  E-value: 4.35e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  272 PVASDIQARTVVLTWSPPSSLiNGEtdessvpeLYGYEVLISSTGKDGKYKSVYV-GEETNITLNDLKPAMDYHAKVQAE 350
Cdd:pfam00041    6 LTVTDVTSTSLTVSWTPPPDG-NGP--------ITGYEVEYRPKNSGEPWNEITVpGTTTSVTLTGLKPGTEYEVRVQAV 76


                   ....*....
gi 1034584001  351 YNSIKGTPS 359
Cdd:pfam00041   77 NGGGEGPPS 85
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 267-352 1.02e-04

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 41.83  E-value: 1.02e-04
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001   267 SNIVKPVASDIQARTVVLTWSPPSslingetDESSVPELYGYEVLISSTGKDGKYKSVyVGEETNITLNDLKPAMDYHAK 346
Cdd:smart00060    2 SPPSNLRVTDVTSTSVTLSWEPPP-------DDGITGYIVGYRVEYREEGSEWKEVNV-TPSSTSYTLTGLKPGTEYEFR 73


                    ....*.
gi 1034584001   347 VQAEYN 352
Cdd:smart00060   74 VRAVNG 79
 
Name Accession Description Interval E-value
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
466-855 4.53e-20

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 95.84  E-value: 4.53e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  466 APSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDG-----EDLAYTVKNLRRSTKYKFKV 540
Cdd:COG3401    130 AVAGGAATAGTYALGAGLYGVDGANASGTTASSVAGAGVVVSPDTSATAAVATTSltvtsTTLVDGGGDIEPGTTYYYRV 209

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  541 IAYNSEGKSNPSEVVEFTTCPDKPGIPVKPSVKGkIHSHSFKITWDPPKDNGgatINKYVVEMAEGSNGnKWEMIYSGAT 620
Cdd:COG3401    210 AATDTGGESAPSNEVSVTTPTTPPSAPTGLTATA-DTPGSVTLSWDPVTESD---ATGYRVYRSNSGDG-PFTKVATVTT 284

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  621 REHLCDRLNPGCFYRLRVYCI-SDGGQSAVSESLLVQTPAVPPGPclPPRLQGRPKA-KEIQLRWGPPLvdgGSPISCYS 698
Cdd:COG3401    285 TSYTDTGLTNGTTYYYRVTAVdAAGNESAPSNVVSVTTDLTPPAA--PSGLTATAVGsSSITLSWTASS---DADVTGYN 359

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  699 VEMSPIEKDEPREVYQG-SEVECTVSSLLPGKTYSFRLRAANKMG-FGPFSEKCDITTAPGPPDQcKPPQVTCRSATCAQ 776
Cdd:COG3401    360 VYRSTSGGGTYTKIAETvTTTSYTDTGLTPGTTYYYKVTAVDAAGnESAPSEEVSATTASAASGE-SLTASVDAVPLTDV 438

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  777 VNWEVPLSNGTDvTEYRLEWGGVEGSMQICYCGPGLSYE-IKGLSPATTYYCRVQALSVVGAGPFSEVVACVTPPSVPGI 855
Cdd:COG3401    439 AGATAAASAASN-PGVSAAVLADGGDTGNAVPFTTTSSTvTATTTDTTTANLSVTTGSLVGGSGASSVTNSVSVIGASAA 517
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
727-955 2.27e-16

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 83.90  E-value: 2.27e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  727 PGKTYSFRLRAANKMGFGPFSEKCDITTAPGPPDqcKPPQVTCRSATCAQV--NWEVplSNGTDVTEYRLEWGGVE-GSM 803
Cdd:COG3401    201 PGTTYYYRVAATDTGGESAPSNEVSVTTPTTPPS--APTGLTATADTPGSVtlSWDP--VTESDATGYRVYRSNSGdGPF 276

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  804 QICYCGPGLSYEIKGLSPATTYYCRVQALSVVG-AGPFSEVV---ACVTPPSVPGIVTCLQeISDDEIEnphyspstcla 879
Cdd:COG3401    277 TKVATVTTTSYTDTGLTNGTTYYYRVTAVDAAGnESAPSNVVsvtTDLTPPAAPSGLTATA-VGSSSIT----------- 344

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  880 ISWEKPcdHGSEILAYSI---DFGDKQSLTVGKV---TSYIINNLQPDTTYRIRIQALNSLG-AGPFSHMIKLKTKPLPP 952
Cdd:COG3401    345 LSWTAS--SDADVTGYNVyrsTSGGGTYTKIAETvttTSYTDTGLTPGTTYYYKVTAVDAAGnESAPSEEVSATTASAAS 422


                   ...
gi 1034584001  953 DPP 955
Cdd:COG3401    423 GES 425
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
441-667 1.45e-14

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 78.12  E-value: 1.45e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  441 FRLSARNDYGTSGFSEEVLYYTSGCAPSMPASPVLTKAGITWLSLQWSKPSGTPSDegiSYILEMEEETSGyGFKPKYDG 520
Cdd:COG3401    207 YRVAATDTGGESAPSNEVSVTTPTTPPSAPTGLTATADTPGSVTLSWDPVTESDAT---GYRVYRSNSGDG-PFTKVATV 282

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  521 EDLAYTVKNLRRSTKYKFKVIAYNSEG-KSNPSEVVEFTTCPDKPGIPVkpSVKGKIHSHSF-KITWDPPKDNGgatINK 598
Cdd:COG3401    283 TTTSYTDTGLTNGTTYYYRVTAVDAAGnESAPSNVVSVTTDLTPPAAPS--GLTATAVGSSSiTLSWTASSDAD---VTG 357

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034584001  599 YVVEMAEGSNGNkWEMIYSGATREHLCDR-LNPGCFYRLRVYCI-SDGGQSAVSESLLVQTPAVPPGPCLP 667
Cdd:COG3401    358 YNVYRSTSGGGT-YTKIAETVTTTSYTDTgLTPGTTYYYKVTAVdAAGNESAPSEEVSATTASAASGESLT 427
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 371-462 2.10e-13

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 66.75  E-value: 2.10e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  371 PDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEW-DEGKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDY 449
Cdd:cd00063      1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYrEKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGG 80

                           90
                   ....*....|...
gi 1034584001  450 GTSGFSEEVLYYT 462
Cdd:cd00063     81 GESPPSESVTVTT 93
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 467-559 2.29e-13

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 66.75  E-value: 2.29e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  467 PSMPASPVLTKAGITWLSLQWSKPSGTPSdEGISYILEMEEETSGYGFK-PKYDGEDLAYTVKNLRRSTKYKFKVIAYNS 545
Cdd:cd00063      1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGG-PITGYVVEYREKGSGDWKEvEVTPGSETSYTLTGLKPGTEYEFRVRAVNG 79

                           90
                   ....*....|....
gi 1034584001  546 EGKSNPSEVVEFTT 559
Cdd:cd00063     80 GGESPPSESVTVTT 93
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 678-754 4.58e-13

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 65.98  E-value: 4.58e-13
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034584001  678 EIQLRWGPPLvDGGSPISCYSVEMSPIEKDEPREV--YQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITT 754
Cdd:cd00063     16 SVTLSWTPPE-DDGGPITGYVVEYREKGSGDWKEVevTPGSETSYTLTGLKPGTEYEFRVRAVNGGGESPPSESVTVTT 93
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
273-612 7.86e-13

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 72.34  E-value: 7.86e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  273 VASDIQARTVVLTWSPpssliNGETDESsvpelyGYEVLISSTGkDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAE-Y 351
Cdd:COG3401    240 TATADTPGSVTLSWDP-----VTESDAT------GYRVYRSNSG-DGPFTKVATVTTTSYTDTGLTNGTTYYYRVTAVdA 307

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  352 NSIKGTPSEAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGskIQNFVLEWDEGKGnGEFCQ-CYMGSQKQFKI 430
Cdd:COG3401    308 AGNESAPSNVVSVTTDLTPPAAPSGLTATAVGSSSITLSWTASSDAD--VTGYNVYRSTSGG-GTYTKiAETVTTTSYTD 384

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  431 TKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGCAPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETS 510
Cdd:COG3401    385 TGLTPGTTYYYKVTAVDAAGNESAPSEEVSATTASAASGESLTASVDAVPLTDVAGATAAASAASNPGVSAAVLADGGDT 464

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  511 GYGFKPKYDGEDLAYTVKNLRRSTKYkfKVIAYNSEGKSNPSEVVEFTTcPDKPGIPVKPSVKGKIHShsfKITWDPPKD 590
Cdd:COG3401    465 GNAVPFTTTSSTVTATTTDTTTANLS--VTTGSLVGGSGASSVTNSVSV-IGASAAAAVGGAPDGTPN---VTGASPVTV 538

                          330       340
                   ....*....|....*....|..
gi 1034584001  591 NGGATINKYVVEMAEGSNGNKW 612
Cdd:COG3401    539 GASTGDVLITDLVSLTTSASSS 560
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 756-848 1.45e-12

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 64.44  E-value: 1.45e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  756 PGPPDQckpPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGV-EGSMQIC--YCGPGLSYEIKGLSPATTYYCRVQAL 832
Cdd:cd00063      1 PSPPTN---LRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKgSGDWKEVevTPGSETSYTLTGLKPGTEYEFRVRAV 77

                           90
                   ....*....|....*.
gi 1034584001  833 SVVGAGPFSEVVACVT 848
Cdd:cd00063     78 NGGGESPPSESVTVTT 93
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
811-971 4.92e-12

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 70.03  E-value: 4.92e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  811 GLSYEIKGLSPATTYYCRVQALSVVGAGPFS---EVVACVTPPSVPGIVTcLQEISDDEIEnphyspstclaISWEKPCD 887
Cdd:COG3401    191 TLVDGGGDIEPGTTYYYRVAATDTGGESAPSnevSVTTPTTPPSAPTGLT-ATADTPGSVT-----------LSWDPVTE 258

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  888 HGseILAYSI-----DFGDKQSLTVGKVTSYIINNLQPDTTYRIRIQALNSLG-AGPFSHMIKLKTKPLPPDPPR-LECV 960
Cdd:COG3401    259 SD--ATGYRVyrsnsGDGPFTKVATVTTTSYTDTGLTNGTTYYYRVTAVDAAGnESAPSNVVSVTTDLTPPAAPSgLTAT 336

                          170
                   ....*....|.
gi 1034584001  961 AFSHQNLKLKW 971
Cdd:COG3401    337 AVGSSSITLSW 347
fn3 pfam00041
Fibronectin type III domain;
865-940 2.25e-11

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 60.89  E-value: 2.25e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  865 DEIENPHYSP--STCLAISWEKPCDHGSEILAYSIDF------GDKQSLTVGKVT-SYIINNLQPDTTYRIRIQALNSLG 935
Cdd:pfam00041    1 SAPSNLTVTDvtSTSLTVSWTPPPDGNGPITGYEVEYrpknsgEPWNEITVPGTTtSVTLTGLKPGTEYEVRVQAVNGGG 80


                   ....*
gi 1034584001  936 AGPFS 940
Cdd:pfam00041   81 EGPPS 85
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 564-657 4.51e-11

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 60.20  E-value: 4.51e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  564 PGIPVKPSVKGkIHSHSFKITWDPPKDNGGAtINKYVVEMAEgSNGNKWEMI--YSGATREHLCDRLNPGCFYRLRVYCI 641
Cdd:cd00063      1 PSPPTNLRVTD-VTSTSVTLSWTPPEDDGGP-ITGYVVEYRE-KGSGDWKEVevTPGSETSYTLTGLKPGTEYEFRVRAV 77

                           90
                   ....*....|....*.
gi 1034584001  642 SDGGQSAVSESLLVQT 657
Cdd:cd00063     78 NGGGESPPSESVTVTT 93
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 875-947 8.17e-11

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 59.43  E-value: 8.17e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  875 STCLAISWEKPCDHGSEILAYSIDFGDKQS-------LTVGKVTSYIINNLQPDTTYRIRIQALNSLGAGPFSHMIKLKT 947
Cdd:cd00063     14 STSVTLSWTPPEDDGGPITGYVVEYREKGSgdwkeveVTPGSETSYTLTGLKPGTEYEFRVRAVNGGGESPPSESVTVTT 93
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 756-838 1.02e-09

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 56.08  E-value: 1.02e-09
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001   756 PGPPdqcKPPQVTCRSATCAQVNWEVPLSNGTD--VTEYRLEWGGVEGSMQICYCGPG-LSYEIKGLSPATTYYCRVQAL 832
Cdd:smart00060    1 PSPP---SNLRVTDVTSTSVTLSWEPPPDDGITgyIVGYRVEYREEGSEWKEVNVTPSsTSYTLTGLKPGTEYEFRVRAV 77


                    ....*.
gi 1034584001   833 SVVGAG 838
Cdd:smart00060   78 NGAGEG 83
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 267-366 2.12e-09

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 55.58  E-value: 2.12e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  267 SNIVKPVASDIQARTVVLTWSPPsslingetdESSVPELYGYEVLISSTGKDGKYK-SVYVGEETNITLNDLKPAMDYHA 345
Cdd:cd00063      2 SPPTNLRVTDVTSTSVTLSWTPP---------EDDGGPITGYVVEYREKGSGDWKEvEVTPGSETSYTLTGLKPGTEYEF 72

                           90       100
                   ....*....|....*....|.
gi 1034584001  346 KVQAEYNSIKGTPSEAEIFTT 366
Cdd:cd00063     73 RVRAVNGGGESPPSESVTVTT 93
fn3 pfam00041
Fibronectin type III domain;
765-841 2.60e-09

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 55.11  E-value: 2.60e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  765 PQVTCRSATCAQVNWEVPLSNGTDVTEYRLEW---GGVEGSMQICYCGPGLSYEIKGLSPATTYYCRVQALSVVGAGPFS 841
Cdd:pfam00041    6 LTVTDVTSTSLTVSWTPPPDGNGPITGYEVEYrpkNSGEPWNEITVPGTTTSVTLTGLKPGTEYEVRVQAVNGGGEGPPS 85
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 662-744 3.71e-09

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 54.54  E-value: 3.71e-09
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001   662 PGPclPPRLQGRPKAKE-IQLRWGPPLVDGG-SPISCYSVEMSPIEKDEPREVYQGSEVECTVSSLLPGKTYSFRLRAAN 739
Cdd:smart00060    1 PSP--PSNLRVTDVTSTsVTLSWEPPPDDGItGYIVGYRVEYREEGSEWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVN 78


                    ....*
gi 1034584001   740 KMGFG 744
Cdd:smart00060   79 GAGEG 83
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 371-452 7.95e-09

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 53.39  E-value: 7.95e-09
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001   371 PDIPNPPRIANRTKNSLTLQWKAPSDNG--SKIQNFVLEWDEGKGNGEFCQCyMGSQKQFKITKLSPAMGCKFRLSARND 448
Cdd:smart00060    1 PSPPSNLRVTDVTSTSVTLSWEPPPDDGitGYIVGYRVEYREEGSEWKEVNV-TPSSTSYTLTGLKPGTEYEFRVRAVNG 79


                    ....
gi 1034584001   449 YGTS 452
Cdd:smart00060   80 AGEG 83
fn3 pfam00041
Fibronectin type III domain;
374-455 1.30e-08

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 52.80  E-value: 1.30e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  374 PNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWdEGKGNGEFCQCYM--GSQKQFKITKLSPAMGCKFRLSARNDYGT 451
Cdd:pfam00041    3 PSNLTVTDVTSTSLTVSWTPPPDGNGPITGYEVEY-RPKNSGEPWNEITvpGTTTSVTLTGLKPGTEYEVRVQAVNGGGE 81


                   ....
gi 1034584001  452 SGFS 455
Cdd:pfam00041   82 GPPS 85
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 467-549 1.88e-08

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 52.62  E-value: 1.88e-08
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001   467 PSMPASPVLTKAGITWLSLQWSKPsgtPSDEGISYILEMEEETSGYGFKPK---YDGEDLAYTVKNLRRSTKYKFKVIAY 543
Cdd:smart00060    1 PSPPSNLRVTDVTSTSVTLSWEPP---PDDGITGYIVGYRVEYREEGSEWKevnVTPSSTSYTLTGLKPGTEYEFRVRAV 77


                    ....*.
gi 1034584001   544 NSEGKS 549
Cdd:smart00060   78 NGAGEG 83
fn3 pfam00041
Fibronectin type III domain;
678-747 2.37e-08

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 52.03  E-value: 2.37e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1034584001  678 EIQLRWGPPLvDGGSPISCYSVEMSPIEKDEPREVYQ--GSEVECTVSSLLPGKTYSFRLRAANKMGFGPFS 747
Cdd:pfam00041   15 SLTVSWTPPP-DGNGPITGYEVEYRPKNSGEPWNEITvpGTTTSVTLTGLKPGTEYEVRVQAVNGGGEGPPS 85
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 875-937 3.31e-08

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 51.85  E-value: 3.31e-08
                            10        20        30        40        50        60        70
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001   875 STCLAISWEKPCDHG--SEILAYSIDFGDKQSL-----TVGKVTSYIINNLQPDTTYRIRIQALNSLGAG 937
Cdd:smart00060   14 STSVTLSWEPPPDDGitGYIVGYRVEYREEGSEwkevnVTPSSTSYTLTGLKPGTEYEFRVRAVNGAGEG 83
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 564-647 3.29e-07

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 48.76  E-value: 3.29e-07
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001   564 PGIPVKPSVKGkIHSHSFKITWDPPKDNGGatiNKYVVE--MAEGSNGNKWEMIY-SGATREHLCDRLNPGCFYRLRVYC 640
Cdd:smart00060    1 PSPPSNLRVTD-VTSTSVTLSWEPPPDDGI---TGYIVGyrVEYREEGSEWKEVNvTPSSTSYTLTGLKPGTEYEFRVRA 76


                    ....*..
gi 1034584001   641 ISDGGQS 647
Cdd:smart00060   77 VNGAGEG 83
fn3 pfam00041
Fibronectin type III domain;
272-359 4.35e-07

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 48.57  E-value: 4.35e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  272 PVASDIQARTVVLTWSPPSSLiNGEtdessvpeLYGYEVLISSTGKDGKYKSVYV-GEETNITLNDLKPAMDYHAKVQAE 350
Cdd:pfam00041    6 LTVTDVTSTSLTVSWTPPPDG-NGP--------ITGYEVEYRPKNSGEPWNEITVpGTTTSVTLTGLKPGTEYEVRVQAV 76


                   ....*....
gi 1034584001  351 YNSIKGTPS 359
Cdd:pfam00041   77 NGGGEGPPS 85
fn3 pfam00041
Fibronectin type III domain;
578-650 1.39e-05

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 44.33  E-value: 1.39e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1034584001  578 SHSFKITWDPPKDNGGaTINKYVVEMAEGSNGNKW-EMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVS 650
Cdd:pfam00041   13 STSLTVSWTPPPDGNG-PITGYEVEYRPKNSGEPWnEITVPGTTTSVTLTGLKPGTEYEVRVQAVNGGGEGPPS 85
fn3 pfam00041
Fibronectin type III domain;
470-552 1.64e-05

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 44.33  E-value: 1.64e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  470 PASPVLTKAGITWLSLQWSKPSgTPSDEGISYILEMEEETSGYGFKPKYDGEDLA-YTVKNLRRSTKYKFKVIAYNSEGK 548
Cdd:pfam00041    3 PSNLTVTDVTSTSLTVSWTPPP-DGNGPITGYEVEYRPKNSGEPWNEITVPGTTTsVTLTGLKPGTEYEVRVQAVNGGGE 81


                   ....
gi 1034584001  549 SNPS 552
Cdd:pfam00041   82 GPPS 85
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 267-352 1.02e-04

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 41.83  E-value: 1.02e-04
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001   267 SNIVKPVASDIQARTVVLTWSPPSslingetDESSVPELYGYEVLISSTGKDGKYKSVyVGEETNITLNDLKPAMDYHAK 346
Cdd:smart00060    2 SPPSNLRVTDVTSTSVTLSWEPPP-------DDGITGYIVGYRVEYREEGSEWKEVNV-TPSSTSYTLTGLKPGTEYEFR 73


                    ....*.
gi 1034584001   347 VQAEYN 352
Cdd:smart00060   74 VRAVNG 79
COG4733 COG4733
Phage-related protein, tail protein J [Mobilome: prophages, transposons];
710-836 6.11e-04

Phage-related protein, tail protein J [Mobilome: prophages, transposons];


Pssm-ID: 443767 [Multi-domain]  Cd Length: 978  Bit Score: 43.78  E-value: 6.11e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  710 REVYQGSEVECTVSSLLPGkTYSFRLRAANKMG---FGPFSEKCDITTAPGPPdqckpPQVTCRSATC----AQVNWEVP 782
Cdd:COG4733    579 VSVPRTSGTSFEVPGIYAG-DYEVRVRAINALGvssAWAASSETTVTGKTAPP-----PAPTGLTATGglggITLSWSFP 652

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1034584001  783 lsNGTDVTEYRLEWGGV---EGSMQICYCGPGLSYEIKGLSPATTYYCRVQALSVVG 836
Cdd:COG4733    653 --VDADTLRTEIRYSTTgdwASATVAQALYPGNTYTLAGLKAGQTYYYRARAVDRSG 707
COG4733 COG4733
Phage-related protein, tail protein J [Mobilome: prophages, transposons];
775-935 1.15e-03

Phage-related protein, tail protein J [Mobilome: prophages, transposons];


Pssm-ID: 443767 [Multi-domain]  Cd Length: 978  Bit Score: 43.01  E-value: 1.15e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  775 AQVNWEVPlsngTDVTEYRLEWGGVEGSMQICYCGPGLSYEIKGLsPATTYYCRVQALSVVG------AGPFSEVVACVT 848
Cdd:COG4733    554 LTVSWDAP----AGAVAYEVEWRRDDGNWVSVPRTSGTSFEVPGI-YAGDYEVRVRAINALGvssawaASSETTVTGKTA 628

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  849 PPSVP-GIVTclqEISDDEIEnphyspstclaISWEKPCDhgSEILAYSI---DFGDKQSLTV----GKVTSYIINNLQP 920
Cdd:COG4733    629 PPPAPtGLTA---TGGLGGIT-----------LSWSFPVD--ADTLRTEIrysTTGDWASATVaqalYPGNTYTLAGLKA 692

                          170
                   ....*....|....*
gi 1034584001  921 DTTYRIRIQALNSLG 935
Cdd:COG4733    693 GQTYYYRARAVDRSG 707
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
872-971 2.13e-03

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 41.91  E-value: 2.13e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034584001  872 YSPSTCLAISWEKPCDHGSEILAYSIDFGDKQSLTVGKVTSYIINNLQPDTTYRIRIQALNSLGAGPFSHMIKLKTKPLP 951
Cdd:COG3401    153 ANASGTTASSVAGAGVVVSPDTSATAAVATTSLTVTSTTLVDGGGDIEPGTTYYYRVAATDTGGESAPSNEVSVTTPTTP 232

                           90       100
                   ....*....|....*....|.
gi 1034584001  952 PDPP-RLECVAFSHQNLKLKW 971
Cdd:COG3401    233 PSAPtGLTATADTPGSVTLSW 253
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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