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Conserved domains on  [gi|1039781344|ref|XP_017167982|]
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uncharacterized LOC729966 homolog isoform X1 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03209 super family cl25752
translocon at the inner envelope of chloroplast subunit 62; Provisional
 48-128 2.57e-03

translocon at the inner envelope of chloroplast subunit 62; Provisional


The actual alignment was detected with superfamily member PLN03209:

Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 37.98  E-value: 2.57e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039781344  48 PSPETTPDSTYTSLETISPPDSTTPNPGSASPDPETASLPTSGFPSSEPTTTSQSTNLPPQGLSTVSSPHQDAGSLWTPT 127
Cdd:PLN03209  431 EAKKTRPLSPYARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVYDDLKPPT 510


                  .
gi 1039781344 128 S 128
Cdd:PLN03209  511 S 511
 
Name Accession Description Interval E-value
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 48-128 2.57e-03

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 37.98  E-value: 2.57e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039781344  48 PSPETTPDSTYTSLETISPPDSTTPNPGSASPDPETASLPTSGFPSSEPTTTSQSTNLPPQGLSTVSSPHQDAGSLWTPT 127
Cdd:PLN03209  431 EAKKTRPLSPYARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVYDDLKPPT 510


                  .
gi 1039781344 128 S 128
Cdd:PLN03209  511 S 511
 
Name Accession Description Interval E-value
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 48-128 2.57e-03

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 37.98  E-value: 2.57e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039781344  48 PSPETTPDSTYTSLETISPPDSTTPNPGSASPDPETASLPTSGFPSSEPTTTSQSTNLPPQGLSTVSSPHQDAGSLWTPT 127
Cdd:PLN03209  431 EAKKTRPLSPYARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVYDDLKPPT 510


                  .
gi 1039781344 128 S 128
Cdd:PLN03209  511 S 511
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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