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Conserved domains on  [gi|1039741869|ref|XP_017170675|]
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tetratricopeptide repeat protein 6 isoform X3 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1341-1541 1.18e-29

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 119.34  E-value: 1.18e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1341 AECLYNLGLCYMEEGNFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYLSRVAYYG 1419
Cdd:COG0457      8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRyEEALADYEQALELDPDDAEALNNLGLALQ 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1420 LKGRYSKAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRDY 1499
Cdd:COG0457     88 ALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELL 167

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|..
gi 1039741869 1500 GIVLLLDAGENIALNTLINRGLIYTELKQYGFALEDFKQAAL 1541
Cdd:COG0457    168 EKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRK 209
PEP_TPR_lipo super family cl37187
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 896-1745 1.06e-28

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


The actual alignment was detected with superfamily member TIGR02917:

Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 125.58  E-value: 1.06e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  896 GAIYRKLGKLQSAMNDLQEAIFQ--EPFFLNAYWHRhfIYLFQDKVNDALDDLnfiTKY----NKNHAE--AYLSKAEiF 967
Cdd:TIGR02917   63 GKIYLALGDYAAAEKELRKALSLgyPKNQVLPLLAR--AYLLQGKFQQVLDEL---PGKtlldDEGAAEllALRGLAY-L 136

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  968 REKDITLAILNYSQAIKCRPKDADL----------YFKRGEMYEKTNKVLAIDDyskciyynrKRSDALWKRGMFYFENG 1037
Cdd:TIGR02917  137 GLGQLELAQKSYEQALAIDPRSLYAklglaqlalaENRFDEARALIDEVLTADP---------GNVDALLLKGDLLLSLG 207

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1038 NWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRACL-FRKSSPYRALQDYSVS 1116
Cdd:TIGR02917  208 NIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVdFQKKNYEDARETLQDA 287

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1117 VLINDGYdnLNCFLHRGILYTQLKFWMLAICDFETVVSLERNATLAYINIGIIYLEhLDNYTEAFWWFTEAIK---VDPL 1193
Cdd:TIGR02917  288 LKSAPEY--LPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLR-LGRVDEAIATLSPALGldpDDPA 364

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1194 YLQSYicrAETYSKLHKLKRAVIELTRAIHLQPDAIHLYIMRGQFLLMMKSYDLAKFTIYQVAEMNKgiiEMSPIQEALI 1273
Cdd:TIGR02917  365 ALSLL---GEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDP---ELGRADLLLI 438

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1274 YSFCENH--DKAIHILEGVIASKPD-ISTYALLAKAQMKAKRIKESVRLFKKALELytfsdkgpvaTSVSAECLYNLGLC 1350
Cdd:TIGR02917  439 LSYLRSGqfDKALAAAKKLEKKQPDnASLHNLLGAIYLGKGDLAKAREAFEKALSI----------EPDFFPAAANLARI 508

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1351 YMEEGNFQMAFESFTKAVKANPEFAEAfyHRGLCKVKL---NKQNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKA 1427
Cdd:TIGR02917  509 DIQEGNPDDAIQRFEKVLTIDPKNLRA--ILALAGLYLrtgNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKA 586

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1428 ILNCNEAIKLYPESVRAYicrgvlkyynrtyklgitdlstaikmdknnytayynralcytkigehqmalrdygivLLLda 1507
Cdd:TIGR02917  587 LAILNEAADAAPDSPEAW---------------------------------------------------------LML-- 607

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1508 genialntlinrGLIYTELKQYGFALEDFKQAALMSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIKINPHYVDAYIGR 1587
Cdd:TIGR02917  608 ------------GRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGL 675

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1588 GNSYMEYSQEDAMIQAQKDFLKAlhldpsclkarislgYNLQAQGKFQKAWIHFTVGiesnpksylayegravvclqmsN 1667
Cdd:TIGR02917  676 AQLLLAAKRTESAKKIAKSLQKQ---------------HPKAALGFELEGDLYLRQK----------------------D 718

                          810       820       830       840       850       860       870
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039741869 1668 YFAAMQDINCAIKINSTAEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQATHIFLNV 1745
Cdd:TIGR02917  719 YPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTV 796
PTZ00436 super family cl33183
60S ribosomal protein L19-like protein; Provisional
 13-178 2.76e-03

60S ribosomal protein L19-like protein; Provisional


The actual alignment was detected with superfamily member PTZ00436:

Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 42.24  E-value: 2.76e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869   13 REESYMFKELEKIRQKTKKDyEQLRQRLAAR-------------PTLKARYEDQEKEERPGTAGGSGEKKGHVSWAAKPS 79
Cdd:PTZ00436   133 RNKRNLMEHIHKVKNEKKKE-RQLAEQLAAKrlkdeqhrhkarkQELRKREKDRERARREDAAAAAAAKQKAAAKKAAAP 211

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869   80 SGAQSGERPAAADLQGAPHSARGSPGKPQrfSPRDFYMRSSAFRRHPPYKEA-----PAIAPQVGTTRPVILLRPRSRRK 154
Cdd:PTZ00436   212 SGKKSAKAAAPAKAAAAPAKAAAPPAKAA--AAPAKAAAAPAKAAAPPAKAAappakAAAPPAKAAAPPAKAAAPPAKAA 289

                          170       180
                   ....*....|....*....|....
gi 1039741869  155 RLREKGRGAPVTTRVSKGRAQESP 178
Cdd:PTZ00436   290 APPAKAAAAPAKAAAAPAKAAAAP 313
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1341-1541 1.18e-29

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 119.34  E-value: 1.18e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1341 AECLYNLGLCYMEEGNFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYLSRVAYYG 1419
Cdd:COG0457      8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRyEEALADYEQALELDPDDAEALNNLGLALQ 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1420 LKGRYSKAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRDY 1499
Cdd:COG0457     88 ALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELL 167

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|..
gi 1039741869 1500 GIVLLLDAGENIALNTLINRGLIYTELKQYGFALEDFKQAAL 1541
Cdd:COG0457    168 EKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRK 209
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 896-1745 1.06e-28

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 125.58  E-value: 1.06e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  896 GAIYRKLGKLQSAMNDLQEAIFQ--EPFFLNAYWHRhfIYLFQDKVNDALDDLnfiTKY----NKNHAE--AYLSKAEiF 967
Cdd:TIGR02917   63 GKIYLALGDYAAAEKELRKALSLgyPKNQVLPLLAR--AYLLQGKFQQVLDEL---PGKtlldDEGAAEllALRGLAY-L 136

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  968 REKDITLAILNYSQAIKCRPKDADL----------YFKRGEMYEKTNKVLAIDDyskciyynrKRSDALWKRGMFYFENG 1037
Cdd:TIGR02917  137 GLGQLELAQKSYEQALAIDPRSLYAklglaqlalaENRFDEARALIDEVLTADP---------GNVDALLLKGDLLLSLG 207

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1038 NWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRACL-FRKSSPYRALQDYSVS 1116
Cdd:TIGR02917  208 NIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVdFQKKNYEDARETLQDA 287

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1117 VLINDGYdnLNCFLHRGILYTQLKFWMLAICDFETVVSLERNATLAYINIGIIYLEhLDNYTEAFWWFTEAIK---VDPL 1193
Cdd:TIGR02917  288 LKSAPEY--LPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLR-LGRVDEAIATLSPALGldpDDPA 364

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1194 YLQSYicrAETYSKLHKLKRAVIELTRAIHLQPDAIHLYIMRGQFLLMMKSYDLAKFTIYQVAEMNKgiiEMSPIQEALI 1273
Cdd:TIGR02917  365 ALSLL---GEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDP---ELGRADLLLI 438

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1274 YSFCENH--DKAIHILEGVIASKPD-ISTYALLAKAQMKAKRIKESVRLFKKALELytfsdkgpvaTSVSAECLYNLGLC 1350
Cdd:TIGR02917  439 LSYLRSGqfDKALAAAKKLEKKQPDnASLHNLLGAIYLGKGDLAKAREAFEKALSI----------EPDFFPAAANLARI 508

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1351 YMEEGNFQMAFESFTKAVKANPEFAEAfyHRGLCKVKL---NKQNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKA 1427
Cdd:TIGR02917  509 DIQEGNPDDAIQRFEKVLTIDPKNLRA--ILALAGLYLrtgNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKA 586

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1428 ILNCNEAIKLYPESVRAYicrgvlkyynrtyklgitdlstaikmdknnytayynralcytkigehqmalrdygivLLLda 1507
Cdd:TIGR02917  587 LAILNEAADAAPDSPEAW---------------------------------------------------------LML-- 607

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1508 genialntlinrGLIYTELKQYGFALEDFKQAALMSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIKINPHYVDAYIGR 1587
Cdd:TIGR02917  608 ------------GRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGL 675

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1588 GNSYMEYSQEDAMIQAQKDFLKAlhldpsclkarislgYNLQAQGKFQKAWIHFTVGiesnpksylayegravvclqmsN 1667
Cdd:TIGR02917  676 AQLLLAAKRTESAKKIAKSLQKQ---------------HPKAALGFELEGDLYLRQK----------------------D 718

                          810       820       830       840       850       860       870
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039741869 1668 YFAAMQDINCAIKINSTAEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQATHIFLNV 1745
Cdd:TIGR02917  719 YPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTV 796
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1574-1742 5.63e-25

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 105.86  E-value: 5.63e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1574 IKINPHYVDAYIGRGNSYMEYSQEDamiQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQKAWIHFTVGIESNPKSYL 1653
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYE---EAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAE 77

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1654 AYEGRAVVCLQMSNYFAAMQDINCAIKINST-AEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHH 1732
Cdd:COG0457     78 ALNNLGLALQALGRYEEALEDYDKALELDPDdAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157

                          170
                   ....*....|
gi 1039741869 1733 RQFSQATHIF 1742
Cdd:COG0457    158 GRYEEALELL 167
MamA NF040959
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ...
 1446-1642 2.33e-06

magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.


Pssm-ID: 468889 [Multi-domain]  Cd Length: 204  Bit Score: 50.07  E-value: 2.33e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1446 ICRGVLKYYNRTYKLGitdlstaikmDKNNYTAYYNRALCYTKIGEHQMALRdygivlLLDA---GENIALNTLINRGLI 1522
Cdd:NF040959    17 ILNNMVNGYNRLFSLS----------DRDRAKMYRNKGISHAKKGRYDKAVR------YLEQvarIDPDDVEALYRLGVA 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1523 YTELKQYGFALEDFKqaalmsgTSVSLCQATATCHHR-------IKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYS 1595
Cdd:NF040959    81 YLKTGQYDRAIKVLE-------KVLSLAPDHVKAAYRkgvallkIKDYEKAVEDLEEALEEKPDNFNLNYRLGLALDGLG 153

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*..
gi 1039741869 1596 QEDAMIQAqkdFLKALHLDPSCLKARISLGYNLQAQGKFQKAWIHFT 1642
Cdd:NF040959   154 QYDKAIEA---FQKALELDPNEIKYHQAIGFMYVQKGDHETAAEHFK 197
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 1341-1374 3.98e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 44.74  E-value: 3.98e-06
                            10        20        30
                    ....*....|....*....|....*....|....
gi 1039741869  1341 AECLYNLGLCYMEEGNFQMAFESFTKAVKANPEF 1374
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 1294-1681 1.24e-05

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 49.98  E-value: 1.24e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1294 KPDISTYALLAKAQMK--AKRIKES------VRLFKKALELYTFS---DKGPVATSvsaeclyNLGLCYMEEGNFQMAFE 1362
Cdd:TIGR00990  109 EIDESSVANLSEEERKkyAAKLKEKgnkayrNKDFNKAIKLYSKAiecKPDPVYYS-------NRAACHNALGDWEKVVE 181

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1363 SFTKAVKANPEFAEAFYHRGLCKVKLNK-QNSILDFNrALTLNPKHYQAYLSRVAYYGLKgrySKAILNCNEAIKLYPES 1441
Cdd:TIGR00990  182 DTTAALELDPDYSKALNRRANAYDGLGKyADALLDLT-ASCIIDGFRNEQSAQAVERLLK---KFAESKAKEILETKPEN 257

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1442 VRAYICRGVLKYYNRTyKLGITDLSTAIKMDK---NNYTAYYNRALcYTKIGE-HQMALRDYGIVLLL-DAGENIALnTL 1516
Cdd:TIGR00990  258 LPSVTFVGNYLQSFRP-KPRPAGLEDSNELDEetgNGQLQLGLKSP-ESKADEsYEEAARAFEKALDLgKLGEKEAI-AL 334

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1517 INRGLIYTELKQYGFALEDFKQA-ALMSGTSVSLCQaTATCHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYS 1595
Cdd:TIGR00990  335 NLRGTFKCLKGKHLEALADLSKSiELDPRVTQSYIK-RASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKG 413

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1596 QEDamiQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQKAWIHFTVGIESNPKSYLAYEGRAVVCLQMSNYFAAMQDI 1675
Cdd:TIGR00990  414 EFA---QAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKF 490


                   ....*.
gi 1039741869 1676 NCAIKI 1681
Cdd:TIGR00990  491 DTAIEL 496
TPR_1 pfam00515
Tetratricopeptide repeat;
1341-1374 1.26e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 43.56  E-value: 1.26e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1039741869 1341 AECLYNLGLCYMEEGNFQMAFESFTKAVKANPEF 1374
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 1562-1616 1.05e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 46.47  E-value: 1.05e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1039741869 1562 EFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQEDamiQAQKDFLKALHLDPS 1616
Cdd:cd24142     15 NFELALKFLQRALELEPNNVEALELLGEILLELGDVE---EAREVLLRAIELDPD 66
PRK11189 PRK11189
lipoprotein NlpI; Provisional
 990-1110 1.80e-04

lipoprotein NlpI; Provisional


Pssm-ID: 236875 [Multi-domain]  Cd Length: 296  Bit Score: 45.65  E-value: 1.80e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  990 ADLYFKRGEMYEKTN-KVLAIDDYSKCIYYNRKRSDALWKRGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAYF 1068
Cdd:PRK11189    64 AQLHYERGVLYDSLGlRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY 143

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 1039741869 1069 KRNLYKQATQDFSAAIHLDPNNwvalyyraclfrkssPYRAL 1110
Cdd:PRK11189   144 YGGRYELAQDDLLAFYQDDPND---------------PYRAL 170
TPR_12 pfam13424
Tetratricopeptide repeat;
1297-1373 6.15e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 40.06  E-value: 6.15e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039741869 1297 ISTYALLAKAQMKAKRIKESVRLFKKALELY--TFSDKGPVAtsvsAECLYNLGLCYMEEGNFQMAFESFTKAVKANPE 1373
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIArrLLGPDHPLT----ATTLLNLGRLYLELGRYEEALELLERALALAEK 77
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 1356-1414 9.20e-04

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 43.62  E-value: 9.20e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1356 NFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYLSR 1414
Cdd:PLN03088    17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNfTEAVADANKAIELDPSLAKAYLRK 76
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 13-178 2.76e-03

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 42.24  E-value: 2.76e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869   13 REESYMFKELEKIRQKTKKDyEQLRQRLAAR-------------PTLKARYEDQEKEERPGTAGGSGEKKGHVSWAAKPS 79
Cdd:PTZ00436   133 RNKRNLMEHIHKVKNEKKKE-RQLAEQLAAKrlkdeqhrhkarkQELRKREKDRERARREDAAAAAAAKQKAAAKKAAAP 211

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869   80 SGAQSGERPAAADLQGAPHSARGSPGKPQrfSPRDFYMRSSAFRRHPPYKEA-----PAIAPQVGTTRPVILLRPRSRRK 154
Cdd:PTZ00436   212 SGKKSAKAAAPAKAAAAPAKAAAPPAKAA--AAPAKAAAAPAKAAAPPAKAAappakAAAPPAKAAAPPAKAAAPPAKAA 289

                          170       180
                   ....*....|....*....|....
gi 1039741869  155 RLREKGRGAPVTTRVSKGRAQESP 178
Cdd:PTZ00436   290 APPAKAAAAPAKAAAAPAKAAAAP 313
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 1057-1090 5.22e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 36.27  E-value: 5.22e-03
                            10        20        30
                    ....*....|....*....|....*....|....
gi 1039741869  1057 SKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNN 1090
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1341-1541 1.18e-29

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 119.34  E-value: 1.18e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1341 AECLYNLGLCYMEEGNFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYLSRVAYYG 1419
Cdd:COG0457      8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRyEEALADYEQALELDPDDAEALNNLGLALQ 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1420 LKGRYSKAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRDY 1499
Cdd:COG0457     88 ALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELL 167

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|..
gi 1039741869 1500 GIVLLLDAGENIALNTLINRGLIYTELKQYGFALEDFKQAAL 1541
Cdd:COG0457    168 EKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRK 209
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 896-1745 1.06e-28

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 125.58  E-value: 1.06e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  896 GAIYRKLGKLQSAMNDLQEAIFQ--EPFFLNAYWHRhfIYLFQDKVNDALDDLnfiTKY----NKNHAE--AYLSKAEiF 967
Cdd:TIGR02917   63 GKIYLALGDYAAAEKELRKALSLgyPKNQVLPLLAR--AYLLQGKFQQVLDEL---PGKtlldDEGAAEllALRGLAY-L 136

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  968 REKDITLAILNYSQAIKCRPKDADL----------YFKRGEMYEKTNKVLAIDDyskciyynrKRSDALWKRGMFYFENG 1037
Cdd:TIGR02917  137 GLGQLELAQKSYEQALAIDPRSLYAklglaqlalaENRFDEARALIDEVLTADP---------GNVDALLLKGDLLLSLG 207

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1038 NWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRACL-FRKSSPYRALQDYSVS 1116
Cdd:TIGR02917  208 NIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVdFQKKNYEDARETLQDA 287

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1117 VLINDGYdnLNCFLHRGILYTQLKFWMLAICDFETVVSLERNATLAYINIGIIYLEhLDNYTEAFWWFTEAIK---VDPL 1193
Cdd:TIGR02917  288 LKSAPEY--LPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLR-LGRVDEAIATLSPALGldpDDPA 364

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1194 YLQSYicrAETYSKLHKLKRAVIELTRAIHLQPDAIHLYIMRGQFLLMMKSYDLAKFTIYQVAEMNKgiiEMSPIQEALI 1273
Cdd:TIGR02917  365 ALSLL---GEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDP---ELGRADLLLI 438

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1274 YSFCENH--DKAIHILEGVIASKPD-ISTYALLAKAQMKAKRIKESVRLFKKALELytfsdkgpvaTSVSAECLYNLGLC 1350
Cdd:TIGR02917  439 LSYLRSGqfDKALAAAKKLEKKQPDnASLHNLLGAIYLGKGDLAKAREAFEKALSI----------EPDFFPAAANLARI 508

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1351 YMEEGNFQMAFESFTKAVKANPEFAEAfyHRGLCKVKL---NKQNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKA 1427
Cdd:TIGR02917  509 DIQEGNPDDAIQRFEKVLTIDPKNLRA--ILALAGLYLrtgNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKA 586

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1428 ILNCNEAIKLYPESVRAYicrgvlkyynrtyklgitdlstaikmdknnytayynralcytkigehqmalrdygivLLLda 1507
Cdd:TIGR02917  587 LAILNEAADAAPDSPEAW---------------------------------------------------------LML-- 607

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1508 genialntlinrGLIYTELKQYGFALEDFKQAALMSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIKINPHYVDAYIGR 1587
Cdd:TIGR02917  608 ------------GRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGL 675

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1588 GNSYMEYSQEDAMIQAQKDFLKAlhldpsclkarislgYNLQAQGKFQKAWIHFTVGiesnpksylayegravvclqmsN 1667
Cdd:TIGR02917  676 AQLLLAAKRTESAKKIAKSLQKQ---------------HPKAALGFELEGDLYLRQK----------------------D 718

                          810       820       830       840       850       860       870
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039741869 1668 YFAAMQDINCAIKINSTAEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQATHIFLNV 1745
Cdd:TIGR02917  719 YPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTV 796
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1368-1540 3.26e-27

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 112.41  E-value: 3.26e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1368 VKANPEFAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAYI 1446
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRyEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1447 CRGVLKYYNRTYKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDAGENIALNtliNRGLIYTEL 1526
Cdd:COG0457     81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALY---NLGIALEKL 157

                          170
                   ....*....|....
gi 1039741869 1527 KQYGFALEDFKQAA 1540
Cdd:COG0457    158 GRYEEALELLEKLE 171
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1574-1742 5.63e-25

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 105.86  E-value: 5.63e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1574 IKINPHYVDAYIGRGNSYMEYSQEDamiQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQKAWIHFTVGIESNPKSYL 1653
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYE---EAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAE 77

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1654 AYEGRAVVCLQMSNYFAAMQDINCAIKINST-AEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHH 1732
Cdd:COG0457     78 ALNNLGLALQALGRYEEALEDYDKALELDPDdAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157

                          170
                   ....*....|
gi 1039741869 1733 RQFSQATHIF 1742
Cdd:COG0457    158 GRYEEALELL 167
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1291-1542 2.80e-24

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 103.55  E-value: 2.80e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1291 IASKPD-ISTYALLAKAQMKAKRIKESVRLFKKALELytfsDKGpvatsvSAECLYNLGLCYMEEGNFQMAFESFTKAVK 1369
Cdd:COG0457      1 LELDPDdAEAYNNLGLAYRRLGRYEEAIEDYEKALEL----DPD------DAEALYNLGLAYLRLGRYEEALADYEQALE 70

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1370 ANPEFAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAYICR 1448
Cdd:COG0457     71 LDPDDAEALNNLGLALQALGRyEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNL 150

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1449 GVLKYYNRTYKLGITDLstaikmDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDAGENIALNTLINRGLIYTELKQ 1528
Cdd:COG0457    151 GIALEKLGRYEEALELL------EKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224

                          250
                   ....*....|....
gi 1039741869 1529 YGFALEDFKQAALM 1542
Cdd:COG0457    225 LALALLLALRLAAL 238
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1401-1639 4.65e-24

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 103.16  E-value: 4.65e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1401 LTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDKNNYTAYY 1480
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1481 NRALCYTKIGEHQMALRDYGIVLLLDAGENIALNtliNRGLIYTELKQYGFALEDFKQAALMSGTSVSLCQATATCHHRI 1560
Cdd:COG0457     81 NLGLALQALGRYEEALEDYDKALELDPDDAEALY---NLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039741869 1561 KEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQEDAMIQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQKAWI 1639
Cdd:COG0457    158 GRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLA 236
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1554-1738 6.65e-23

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 99.70  E-value: 6.65e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1554 ATCHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQEDamiQAQKDFLKALHLDPSCLKARISLGYNLQAQGK 1633
Cdd:COG0457     15 GLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYE---EALADYEQALELDPDDAEALNNLGLALQALGR 91

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1634 FQKAWIHFTVGIESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCAIKIN-STAEFLTNRGVIHEFMGQQQSAMADYQAAI 1712
Cdd:COG0457     92 YEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDpDDADALYNLGIALEKLGRYEEALELLEKLE 171

                          170       180
                   ....*....|....*....|....*.
gi 1039741869 1713 SLNPSYSLAYFNAGNIYLHHRQFSQA 1738
Cdd:COG0457    172 AAALAALLAAALGEAALALAAAEVLL 197
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1271-1440 7.31e-23

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 99.70  E-value: 7.31e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1271 ALIYSFCENHDKAIHILEGVIASKPD-ISTYALLAKAQMKAKRIKESVRLFKKALELytfsdkgpvaTSVSAECLYNLGL 1349
Cdd:COG0457     15 GLAYRRLGRYEEAIEDYEKALELDPDdAEALYNLGLAYLRLGRYEEALADYEQALEL----------DPDDAEALNNLGL 84

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1350 CYMEEGNFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAI 1428
Cdd:COG0457     85 ALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRyDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEAL 164

                          170
                   ....*....|..
gi 1039741869 1429 LNCNEAIKLYPE 1440
Cdd:COG0457    165 ELLEKLEAAALA 176
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
951-1113 1.86e-22

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 98.54  E-value: 1.86e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  951 KYNKNHAEAYLSKAEIFRE-KDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSKCIYYNRKRSDALWK 1028
Cdd:COG0457      2 ELDPDDAEAYNNLGLAYRRlGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYeEALADYEQALELDPDDAEALNN 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1029 RGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRACLFRKSSPY- 1107
Cdd:COG0457     82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYe 161


                   ....*.
gi 1039741869 1108 RALQDY 1113
Cdd:COG0457    162 EALELL 167
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1268-1577 1.92e-21

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 96.34  E-value: 1.92e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1268 IQEALIYSFCENHDKAIHILEGVIASKPD-ISTYALLAKAQMKAKRIKESVRLFKKALELytfsdkgpvaTSVSAECLYN 1346
Cdd:COG2956     12 YFKGLNYLLNGQPDKAIDLLEEALELDPEtVEAHLALGNLYRRRGEYDRAIRIHQKLLER----------DPDRAEALLE 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1347 LGLCYMEEGNFQmafesftKAVKAnpefaeafyhrglckvklnkqnsildFNRALTLNPKHYQAYLSRVAYYGLKGRYSK 1426
Cdd:COG2956     82 LAQDYLKAGLLD-------RAEEL--------------------------LEKLLELDPDDAEALRLLAEIYEQEGDWEK 128

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1427 AILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLD 1506
Cdd:COG2956    129 AIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQD 208

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039741869 1507 AGENIALNTLinrGLIYTELKQYGFALEDFKQaALMSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIKIN 1577
Cdd:COG2956    209 PDYLPALPRL---AELYEKLGDPEEALELLRK-ALELDPSDDLLLALADLLERKEGLEAALALLERQLRRH 275
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1418-1637 3.66e-21

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 95.57  E-value: 3.66e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1418 YGLKGRYSKAILNCNEAIKLYPESVRAYICRGVLkyYNRT--YKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMA 1495
Cdd:COG2956     18 YLLNGQPDKAIDLLEEALELDPETVEAHLALGNL--YRRRgeYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRA 95

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1496 LRDYGIVLLLDAGENIALNTLINrglIYTELKQYGFALEDFKQAALMSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIK 1575
Cdd:COG2956     96 EELLEKLLELDPDDAEALRLLAE---IYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALK 172

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039741869 1576 INPHYVDAYIGRGNSYMEYSQEDamiQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQKA 1637
Cdd:COG2956    173 LDPDCARALLLLAELYLEQGDYE---EAIAALERALEQDPDYLPALPRLAELYEKLGDPEEA 231
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1029-1327 8.73e-21

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 94.41  E-value: 8.73e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1029 RGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRACLFRKS-SPY 1107
Cdd:COG2956     14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAgLLD 93

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1108 RALQDYSVsvLINDGYDNLNCFLHRGILYTQLKFWMLAICDFETVVSLERNATLAYINIGIIYLEHlDNYTEAFWWFTEA 1187
Cdd:COG2956     94 RAEELLEK--LLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQ-GDYDEAIEALEKA 170

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1188 IKVDPLYLQSYICRAETYSKLHKLKRAVIELTRAIHLQPDAIHLYIMRGQfllmmksydlakftiyqvaemnkgiiemsp 1267
Cdd:COG2956    171 LKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAE------------------------------ 220

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1268 iqealIYSFCENHDKAIHILEGVIASKPDISTYALLAKAQMKAKRIKESVRLFKKALELY 1327
Cdd:COG2956    221 -----LYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQLRRH 275
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
937-1113 1.25e-20

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 92.67  E-value: 1.25e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  937 DKVNDALDDLNFITKYNKNHAEAYLSKAEIFREKDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSKC 1015
Cdd:COG4785     20 SKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYdLAIADFDQA 99

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1016 IYYNRKRSDALWKRGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALY 1095
Cdd:COG4785    100 LELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERAL 179

                          170
                   ....*....|....*...
gi 1039741869 1096 YRACLFRKSSPYRALQDY 1113
Cdd:COG4785    180 WLYLAERKLDPEKALALL 197
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 932-1225 1.40e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 93.64  E-value: 1.40e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  932 IYLFQDKVNDALDDLNFITKYNKNHAEAYLSKAEIFREK-DITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAI 1009
Cdd:COG2956     17 NYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRgEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLdRAE 96

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1010 DDYSKCIYYNRKRSDALWKRGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPN 1089
Cdd:COG2956     97 ELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPD 176

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1090 NWVALYYRACLfrksspYRALQDYSvsvlindgydnlncflhrgilytqlkfwmLAICDFETVVSLERNATLAYINIGII 1169
Cdd:COG2956    177 CARALLLLAEL------YLEQGDYE-----------------------------EAIAALERALEQDPDYLPALPRLAEL 221

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1039741869 1170 YlEHLDNYTEAFWWFTEAIKVDPLYLQsYICRAETYSKLHKLKRAVIELTRAIHLQ 1225
Cdd:COG2956    222 Y-EKLGDPEEALELLRKALELDPSDDL-LLALADLLERKEGLEAALALLERQLRRH 275
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1050-1248 2.41e-20

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 92.38  E-value: 2.41e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1050 LKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRACLfrksspYRALQDYSvsvlindgydnlncf 1129
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLA------YLRLGRYE--------------- 59

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1130 lhrgilytqlkfwmLAICDFETVVSLERNATLAYINIGIIYLEhLDNYTEAFWWFTEAIKVDPLYLQSYICRAETYSKLH 1209
Cdd:COG0457     60 --------------EALADYEQALELDPDDAEALNNLGLALQA-LGRYEEALEDYDKALELDPDDAEALYNLGLALLELG 124

                          170       180       190
                   ....*....|....*....|....*....|....*....
gi 1039741869 1210 KLKRAVIELTRAIHLQPDAIHLYIMRGQFLLMMKSYDLA 1248
Cdd:COG0457    125 RYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEA 163
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1462-1715 2.90e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 92.87  E-value: 2.90e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1462 ITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDAGENIALNTLinrGLIYTELKQYGFALEDFKQAAL 1541
Cdd:COG2956     28 IDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLEL---AQDYLKAGLLDRAEELLEKLLE 104

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1542 MSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQEDamiQAQKDFLKALHLDPSCLKAR 1621
Cdd:COG2956    105 LDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYD---EAIEALEKALKLDPDCARAL 181

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1622 ISLGYNLQAQGKFQKAWIHFTVGIESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCAIKINSTAEFLTNRGVIHEFMGQQ 1701
Cdd:COG2956    182 LLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGL 261

                          250
                   ....*....|....
gi 1039741869 1702 QSAMADYQAAISLN 1715
Cdd:COG2956    262 EAALALLERQLRRH 275
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1519-1746 1.44e-19

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 90.94  E-value: 1.44e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1519 RGLIYTELKQYGFALEDFKQAALMSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQED 1598
Cdd:COG2956     14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1599 amiQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQKAWIHFTVGIESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCA 1678
Cdd:COG2956     94 ---RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039741869 1679 IKINST-AEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQATHIFLNVF 1746
Cdd:COG2956    171 LKLDPDcARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKAL 239
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
887-1076 2.47e-19

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 89.30  E-value: 2.47e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  887 NLAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAEAYLSKAEI 966
Cdd:COG0457      6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLA 85

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  967 FRE-KDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSKCIYYNRKRSDALWKRGMFYFENGNWIGAVY 1044
Cdd:COG0457     86 LQAlGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYdEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALE 165

                          170       180       190
                   ....*....|....*....|....*....|..
gi 1039741869 1045 DFTSLLKLDPYNSKARTYRGRAYFKRNLYKQA 1076
Cdd:COG0457    166 LLEKLEAAALAALLAAALGEAALALAAAEVLL 197
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
983-1224 6.62e-19

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 88.14  E-value: 6.62e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  983 IKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSKCIYYNRKRSDALWKRGMFYFENGNWIGAVYDFTSLLKLDPYNSKART 1061
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYeEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1062 YRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRACLFRKSSPY-RALQDYSVSVLINDgyDNLNCFLHRGILYTQLK 1140
Cdd:COG0457     81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYdEAIEAYERALELDP--DDADALYNLGIALEKLG 158

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1141 FWMLAICDFEtvvSLERNATLAYINIGIIYLEHLDNYTEAFWWFTEAIKVDPLYLQSYICRAETYSKLHKLKRAVIELTR 1220
Cdd:COG0457    159 RYEEALELLE---KLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRL 235


                   ....
gi 1039741869 1221 AIHL 1224
Cdd:COG0457    236 AALA 239
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1370-1493 8.38e-19

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 87.28  E-value: 8.38e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1370 ANPEFAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAYICR 1448
Cdd:COG4785     68 ALPDLAQLYYERGVAYDSLGDyDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNR 147

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 1039741869 1449 GVLKYYNRTYKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQ 1493
Cdd:COG4785    148 GIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPEK 192
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 895-1495 8.40e-18

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 90.14  E-value: 8.40e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  895 RGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAEAYLSKAEI-FREKDIT 973
Cdd:TIGR02917  199 KGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVdFQKKNYE 278

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  974 LAILNYSQAIKCRPK--DADLY-----FKRGEM---YEKTNKVLAIDDYSkciyYNRKRSDAlwkrgMFYFENGNWIGAV 1043
Cdd:TIGR02917  279 DARETLQDALKSAPEylPALLLagaseYQLGNLeqaYQYLNQILKYAPNS----HQARRLLA-----SIQLRLGRVDEAI 349

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1044 YDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNwVALYYRACLF-----RKSSPYRALQDYS---- 1114
Cdd:TIGR02917  350 ATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPEN-AAARTQLGISklsqgDPSEAIADLETAAqldp 428

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1115 ----VSVLINDGY---------------------DNLNCFLHRGILYTQLKFWMLAICDFETVVSLERN-----ATLAYI 1164
Cdd:TIGR02917  429 elgrADLLLILSYlrsgqfdkalaaakklekkqpDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDffpaaANLARI 508

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1165 NIG---------------IIYLEHLD-------------NYTEAFWWFTEAIKVDPLYLQSYICRAETYSKLHKLKRAVI 1216
Cdd:TIGR02917  509 DIQegnpddaiqrfekvlTIDPKNLRailalaglylrtgNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALA 588

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1217 ELTRAIHLQPDAIHLYIMRGQFLLMMKSYDLAKFTIYQVAEMNKGIIEmSPIQEALIYSFCENHDKAIHILEGVIASKPD 1296
Cdd:TIGR02917  589 ILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSAL-ALLLLADAYAVMKNYAKAITSLKRALELKPD 667

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1297 iSTYALLAKAQ--MKAKRIKESVRLFKKALELYTFSDKGPVAtsvsaeclynLGLCYMEEGNFQMAFESFTKAVKANPEF 1374
Cdd:TIGR02917  668 -NTEAQIGLAQllLAAKRTESAKKIAKSLQKQHPKAALGFEL----------EGDLYLRQKDYPAAIQAYRKALKRAPSS 736

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1375 AEAFY-HRGLCKVKlNKQNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVR-----AYICR 1448
Cdd:TIGR02917  737 QNAIKlHRALLASG-NTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVvlnnlAWLYL 815

                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039741869 1449 G-----VLKYYNRTYKL-----------------------GITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMA 1495
Cdd:TIGR02917  816 ElkdprALEYAERALKLapnipaildtlgwllvekgeadrALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEA 890
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1448-1646 2.12e-17

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 83.04  E-value: 2.12e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1448 RGVLKYYNRTYKLGITDLSTAIkMDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDAGENIALN------TLINRGL 1521
Cdd:COG4785      3 ALALALLLALALAAAAASKAAI-LLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALAlpdlaqLYYERGV 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1522 IYTELKQYGFALEDFKQA-ALMSGTSVSLCQAtATCHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQEDAm 1600
Cdd:COG4785     82 AYDSLGDYDLAIADFDQAlELDPDLAEAYNNR-GLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYEL- 159

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039741869 1601 iqAQKDFLKALHLDPSC----------------LKARISL----GYNLQAQGKFQKAWIHFTVGIE 1646
Cdd:COG4785    160 --AIADLEKALELDPNDperalwlylaerkldpEKALALLledwATAYLLQGDTEEARELFKLALA 223
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 898-1114 2.13e-17

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 84.40  E-value: 2.13e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  898 IYRKLGKLQSAMNDLQEAI--FQ-----EPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAEAYLSKAEIF-RE 969
Cdd:COG2956     44 AHLALGNLYRRRGEYDRAIriHQkllerDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYeQE 123

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  970 KDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSKCIYYNRKRSDALWKRGMFYFENGNWIGAVYDFTS 1048
Cdd:COG2956    124 GDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYdEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALER 203

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039741869 1049 LLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRACLFRKSSPYRALQDYS 1114
Cdd:COG2956    204 ALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLE 269
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1566-1738 1.49e-14

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 79.27  E-value: 1.49e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1566 AVEFFTRAIKINPHYVDAYIGRGNSYMEYSQEDAMIQAQKDFLKALHLDP------SCLKARISLGYNLQAQGKFQKAWI 1639
Cdd:COG3914     20 AAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAaaaallLLAALLELAALLLQALGRYEEALA 99

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1640 HFTVGIESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCAIKIN-STAEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSY 1718
Cdd:COG3914    100 LYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNpDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDN 179

                          170       180
                   ....*....|....*....|
gi 1039741869 1719 SLAYFNAGNIYLHHRQFSQA 1738
Cdd:COG3914    180 AEALNNLGNALQDLGRLEEA 199
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 870-1087 3.41e-14

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 74.77  E-value: 3.41e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  870 YESEVEKLTQEIKSEKRNlAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFI 949
Cdd:COG2956     58 YDRAIRIHQKLLERDPDR-AEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERL 136

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  950 TKYNKNHAEAYLSKAEI-FREKDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSKCIYYNRKRSDALW 1027
Cdd:COG2956    137 LKLGPENAHAYCELAELyLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYeEAIAALERALEQDPDYLPALP 216

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1028 KRGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYrGRAYFKRNLYKQATQDFSAAIHLD 1087
Cdd:COG2956    217 RLAELYEKLGDPEEALELLRKALELDPSDDLLLAL-ADLLERKEGLEAALALLERQLRRH 275
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1296-1441 3.74e-14

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 71.38  E-value: 3.74e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1296 DISTYALLAKAQMKAKRIKESVRLFKKALELYTfsdkgpvaTSVSAecLYNLGLCYMEEGNFQMAFESFTKAVKANPEFA 1375
Cdd:COG4783      3 CAEALYALAQALLLAGDYDEAEALLEKALELDP--------DNPEA--FALLGEILLQLGDLDEAIVLLHEALELDPDEP 72

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039741869 1376 EAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPES 1441
Cdd:COG4783     73 EARLNLGLALLKAGDyDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1195-1418 4.87e-14

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 77.34  E-value: 4.87e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1195 LQSYICRAETYSKLHKLKRAVIELTRAIHLQPDAIHLYIMRGQFLLMMKSYDLAKF-TIYQVAEMNKGIIEMSPIQEALI 1273
Cdd:COG3914      8 ALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAaGEAAAAAAALLLLAALLELAALL 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1274 YSFCENHDKAIHILEGVIASKPD-ISTYALLAKAQMKAKRIKESVRLFKKALELYtfSDkgpvatsvSAECLYNLGLCYM 1352
Cdd:COG3914     88 LQALGRYEEALALYRRALALNPDnAEALFNLGNLLLALGRLEEALAALRRALALN--PD--------FAEAYLNLGEALR 157

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039741869 1353 EEGNFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYLSRVAYY 1418
Cdd:COG3914    158 RLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRlEEAIAAYRRALELDPDNADAHSNLLFAL 224
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1366-1575 5.34e-14

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 73.03  E-value: 5.34e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1366 KAVKANPEFAEAFYHRGLCKVKLNKQNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAY 1445
Cdd:COG4785     31 FAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAY 110

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1446 ICRGVLKYYNRTYKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDAGENialntlinrgliYTE 1525
Cdd:COG4785    111 NNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDP------------ERA 178

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1526 LKQYGFALEDFKQAALmsgtsVSLCQATATCHHRIKEFEGAVEFFTRAIK 1575
Cdd:COG4785    179 LWLYLAERKLDPEKAL-----ALLLEDWATAYLLQGDTEEARELFKLALA 223
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
885-1027 6.81e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 73.50  E-value: 6.81e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  885 KRNLAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAEAYLSKA 964
Cdd:COG0457     38 DPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLG 117

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039741869  965 EIFRE-KDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKVL-AIDDYSKCIYYNRKRSDALW 1027
Cdd:COG0457    118 LALLElGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEeALELLEKLEAAALAALLAAA 182
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1093-1233 6.89e-14

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 73.03  E-value: 6.89e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1093 ALYYRACLFRKSSPYRALQDYSVSVLINDGY-------DNLNCFLHRGILYTQLKFWMLAICDFETVVSLERNATLAYIN 1165
Cdd:COG4785     33 AVLALAIALADLALALAAAALAAAALAAERIdralalpDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNN 112

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039741869 1166 IGIIYLEhLDNYTEAFWWFTEAIKVDPLYLQSYICRAETYSKLHKLKRAVIELTRAIHLQPD----AIHLYI 1233
Cdd:COG4785    113 RGLAYLL-LGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNdperALWLYL 183
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1341-1475 8.93e-14

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 70.22  E-value: 8.93e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1341 AECLYNLGLCYMEEGNFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLNKQNS-ILDFNRALTLNPKHYQAYLSRVAYYG 1419
Cdd:COG4783      4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEaIVLLHEALELDPDEPEARLNLGLALL 83

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1039741869 1420 LKGRYSKAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDKNN 1475
Cdd:COG4783     84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
952-1172 9.24e-14

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 72.64  E-value: 9.24e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  952 YNKNHAEAYLSKAEIFREKDITLAILNYSQAikcRPKDADLYFKRGEMYEKTNKVLA----IDDYSKCIYYNRKRSDALW 1027
Cdd:COG4785      1 LYALALALLLALALAAAAASKAAILLAALLF---AAVLALAIALADLALALAAAALAaaalAAERIDRALALPDLAQLYY 77

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1028 KRGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNnwvalYYRAclfrksspy 1107
Cdd:COG4785     78 ERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPD-----YAYA--------- 143

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039741869 1108 ralqdysvsvlindgydnlncFLHRGILYTQLKFWMLAICDFETVVSLERNATLAYINIGIIYLE 1172
Cdd:COG4785    144 ---------------------YLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERK 187
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 975-1090 9.90e-14

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 69.65  E-value: 9.90e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  975 AILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSKCIYYNRKRSDALWKRGMFYFENGNWIGAVYDFTSLLKLD 1053
Cdd:COG4235      2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYdEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1039741869 1054 PYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNN 1090
Cdd:COG4235     82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1375-1509 1.39e-13

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 69.45  E-value: 1.39e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1375 AEAFYHRGLCKVKLNKQNSIL-DFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAYICRGVLKY 1453
Cdd:COG4783      4 AEALYALAQALLLAGDYDEAEaLLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1039741869 1454 YNRTYKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDAGE 1509
Cdd:COG4783     84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1296-1414 1.41e-13

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 71.87  E-value: 1.41e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1296 DISTYALLAKAQMKAKRIKESVRLFKKALELYtfsdkgPVatsvSAECLYNLGLCYMEEGNFQMAFESFTKAVKANPEFA 1375
Cdd:COG4785     72 LAQLYYERGVAYDSLGDYDLAIADFDQALELD------PD----LAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYA 141

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 1039741869 1376 EAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYLSR 1414
Cdd:COG4785    142 YAYLNRGIALYYLGRyELAIADLEKALELDPNDPERALWL 181
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1564-1717 4.08e-13

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 70.71  E-value: 4.08e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1564 EGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQEDAMIQAQKDFLKAL---HLDPSCLKARISLGYNLQAQGKFQKAWIH 1640
Cdd:COG4785     16 AAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIdraLALPDLAQLYYERGVAYDSLGDYDLAIAD 95

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039741869 1641 FTVGIESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCAIKIN-STAEFLTNRGVIHEFMGQQQSAMADYQAAISLNPS 1717
Cdd:COG4785     96 FDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDpDYAYAYLNRGIALYYLGRYELAIADLEKALELDPN 173
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1351-1509 4.54e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 74.26  E-value: 4.54e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1351 YMEEGNFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAIL 1429
Cdd:COG3914     88 LQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRlEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIA 167

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1430 NCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDAGE 1509
Cdd:COG3914    168 ALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGP 247
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1268-1407 9.00e-13

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 67.14  E-value: 9.00e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1268 IQEALIYSFCENHDKAIHILEGVIASKPD-ISTYALLAKAQMKAKRIKESVRLFKKALELYtfsdkgpvatSVSAECLYN 1346
Cdd:COG4783      8 YALAQALLLAGDYDEAEALLEKALELDPDnPEAFALLGEILLQLGDLDEAIVLLHEALELD----------PDEPEARLN 77

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039741869 1347 LGLCYMEEGNFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKH 1407
Cdd:COG4783     78 LGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRpDEAIAALEKALELDPDD 139
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1350-1443 1.04e-12

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 65.58  E-value: 1.04e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1350 CYMEEGNFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLNKQNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAIL 1429
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80

                           90
                   ....*....|....
gi 1039741869 1430 NCNEAIKLYPESVR 1443
Cdd:COG3063     81 YLERALELDPSALR 94
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 1176-1641 1.64e-12

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 72.32  E-value: 1.64e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1176 NYTEAFWWFTEAI--KVDPLYlqsYICRAETYSKLHKLKRAVIELTRAIHLQPDAIHLYIMRGQFLLMMKSYDLAKFTIy 1253
Cdd:TIGR00990  142 DFNKAIKLYSKAIecKPDPVY---YSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDL- 217

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1254 QVAEMNKGI--IEMSPIQEALIYSFCENhdKAIHILEGVIASKPD---ISTYALLAKAQMKAKRIKESVRLFKKALelyt 1328
Cdd:TIGR00990  218 TASCIIDGFrnEQSAQAVERLLKKFAES--KAKEILETKPENLPSvtfVGNYLQSFRPKPRPAGLEDSNELDEETG---- 291

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1329 fsdKGpvatsvsaecLYNLGLCYMEegnfQMAFESFTKAVKAnpeFAEAfyhrglckvklnkqnsiLDFNRaltLNPKHY 1408
Cdd:TIGR00990  292 ---NG----------QLQLGLKSPE----SKADESYEEAARA---FEKA-----------------LDLGK---LGEKEA 331

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1409 QAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAYICRGVL--------KYYNrtyklgitDLSTAIKMDKNNYTAYY 1480
Cdd:TIGR00990  332 IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMnlelgdpdKAEE--------DFDKALKLNSEDPDIYY 403

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1481 NRALCYTKIGEHQMALRDYGIVLLLDAG---ENIALNTLINR-GLIYTELKQYGFALEDFKQAALMSGTSVSLCQATATC 1556
Cdd:TIGR00990  404 HRAQLHFIKGEFAQAGKDYQKSIDLDPDfifSHIQLGVTQYKeGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKF 483

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1557 HHRIKEFEGAVEFFTraiKINPHYVDAYIGRGNSYMEYSQEDAMIQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQK 1636
Cdd:TIGR00990  484 DEAIEKFDTAIELEK---ETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDE 560


                   ....*
gi 1039741869 1637 AWIHF 1641
Cdd:TIGR00990  561 ALKLF 565
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1340-1446 1.69e-12

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 66.18  E-value: 1.69e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1340 SAECLYNLGLCYMEEGNFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLNKQN-SILDFNRALTLNPKHYQAYLSRVAYY 1418
Cdd:COG4235     16 DAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEeAEELLERALALDPDNPEALYLLGLAA 95

                           90       100
                   ....*....|....*....|....*...
gi 1039741869 1419 GLKGRYSKAILNCNEAIKLYPESVRAYI 1446
Cdd:COG4235     96 FQQGDYAEAIAAWQKLLALLPADAPARL 123
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1472-1734 2.25e-12

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 71.95  E-value: 2.25e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1472 DKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDAGENIALNTLINRGLIYTELKQYGFALEDFKQAALMSGTSvslcq 1551
Cdd:COG3914     13 AAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALL----- 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1552 atatcHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNsymEYSQEDAMIQAQKDFLKALHLDPSCLKARISLGYNLQAQ 1631
Cdd:COG3914     88 -----LQALGRYEEALALYRRALALNPDNAEALFNLGN---LLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRL 159

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1632 GKFQKAWIHFTVGIESNPKSylayegravvclqmsnyfaamqdincaikinstAEFLTNRGVIHEFMGQQQSAMADYQAA 1711
Cdd:COG3914    160 GRLEEAIAALRRALELDPDN---------------------------------AEALNNLGNALQDLGRLEEAIAAYRRA 206

                          250       260
                   ....*....|....*....|...
gi 1039741869 1712 ISLNPSYSLAYFNagniYLHHRQ 1734
Cdd:COG3914    207 LELDPDNADAHSN----LLFALR 225
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1557-1651 1.17e-11

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 63.87  E-value: 1.17e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1557 HHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQEDamiQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQK 1636
Cdd:COG4235     27 YLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTE---EAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103

                           90
                   ....*....|....*
gi 1039741869 1637 AWIHFTVGIESNPKS 1651
Cdd:COG4235    104 AIAAWQKLLALLPAD 118
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1581-1718 2.04e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 63.29  E-value: 2.04e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1581 VDAYIGRGNSYMEYSQEDamiQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQKAWIHFTVGIESNPKSYLAYEGRAV 1660
Cdd:COG4783      4 AEALYALAQALLLAGDYD---EAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1039741869 1661 VCLQMSNYFAAMQDINCAIKINST-AEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSY 1718
Cdd:COG4783     81 ALLKAGDYDEALALLEKALKLDPEhPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 957-1090 2.29e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 63.29  E-value: 2.29e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  957 AEAYLSKAEI-FREKDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSKCIYYNRKRSDALWKRGMFYF 1034
Cdd:COG4783      4 AEALYALAQAlLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLdEAIVLLHEALELDPDEPEARLNLGLALL 83

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1039741869 1035 ENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNN 1090
Cdd:COG4783     84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1389-1517 3.00e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 68.48  E-value: 3.00e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1389 NKQNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTA 1468
Cdd:COG3914     93 RYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRA 172

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 1039741869 1469 IKMDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDAGENIALNTLI 1517
Cdd:COG3914    173 LELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLL 221
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1512-1651 4.22e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 62.52  E-value: 4.22e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1512 ALNTLINRGLIYTELKQYGFALEDFKQAALMSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSY 1591
Cdd:COG4783      3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1592 MEYSQEDamiQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQKAWIHFTVGIESNPKS 1651
Cdd:COG4783     83 LKAGDYD---EALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1490-1637 4.92e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 67.71  E-value: 4.92e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1490 GEHQMALRDYGIVLLLDAGENIALNtliNRGLIYTELKQYGFALEDFKQAALMSGTSVSLCQATATCHHRIKEFEGAVEF 1569
Cdd:COG3914     92 GRYEEALALYRRALALNPDNAEALF---NLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAA 168

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039741869 1570 FTRAIKINPHYVDAYIGRGNSYMEYSQEDAMIQAqkdFLKALHLDPSCLKARISLGYNLQAQGKFQKA 1637
Cdd:COG3914    169 LRRALELDPDNAEALNNLGNALQDLGRLEEAIAA---YRRALELDPDNADAHSNLLFALRQACDWEVY 233
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1556-1652 8.07e-11

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 60.18  E-value: 8.07e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1556 CHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQEDAMIQaqkdFLKALHLDPSCLKARISLGYNLQAQGKFQ 1635
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA----LEKALKLDPNNAEALLNLAELLLELGDYD 76

                           90
                   ....*....|....*..
gi 1039741869 1636 KAWIHFTVGIESNPKSY 1652
Cdd:COG3063     77 EALAYLERALELDPSAL 93
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1616-1742 8.95e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 61.36  E-value: 8.95e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1616 SCLKARISLGYNLQAQGKFQKAWIHFTVGIESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCAIKINST-AEFLTNRGVI 1694
Cdd:COG4783      2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDePEARLNLGLA 81

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1039741869 1695 HEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQATHIF 1742
Cdd:COG4783     82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAAL 129
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 989-1103 9.04e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 61.36  E-value: 9.04e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  989 DADLYFKRGEMYEKTNKV-LAIDDYSKCIYYNRKRSDALWKRGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAY 1067
Cdd:COG4783      3 CAEALYALAQALLLAGDYdEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82

                           90       100       110
                   ....*....|....*....|....*....|....*.
gi 1039741869 1068 FKRNLYKQATQDFSAAIHLDPNNWVALYYRACLFRK 1103
Cdd:COG4783     83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRA 118
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1646-1742 2.12e-10

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 62.63  E-value: 2.12e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1646 ESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCAIKINST-AEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFN 1724
Cdd:COG4785     67 LALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDlAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLN 146

                           90
                   ....*....|....*...
gi 1039741869 1725 AGNIYLHHRQFSQATHIF 1742
Cdd:COG4785    147 RGIALYYLGRYELAIADL 164
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1282-1412 2.52e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 60.02  E-value: 2.52e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1282 KAIHILEGVIASKP-DISTYALLAKAQMKAKRIKESVRLFKKALELytfsDKGpvatsvSAECLYNLGLCYMEEGNFQMA 1360
Cdd:COG4235      1 EAIARLRQALAANPnDAEGWLLLGRAYLRLGRYDEALAAYEKALRL----DPD------NADALLDLAEALLAAGDTEEA 70

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1039741869 1361 FESFTKAVKANPEFAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYL 1412
Cdd:COG4235     71 EELLERALALDPDNPEALYLLGLAAFQQGDyAEAIAAWQKLLALLPADAPARL 123
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1448-1580 3.88e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 59.82  E-value: 3.88e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1448 RGVLKYYNRTYKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDAGENIALNTLinrGLIYTELK 1527
Cdd:COG4783     10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNL---GLALLKAG 86

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1039741869 1528 QYGFALEDFKQAALMSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIKINPHY 1580
Cdd:COG4783     87 DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1394-1513 4.96e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 59.25  E-value: 4.96e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1394 ILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDK 1473
Cdd:COG4235      3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDP 82

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 1039741869 1474 NNYTAYYNRALCYTKIGEHQMALRDYGIVL-LLDAGENIAL 1513
Cdd:COG4235     83 DNPEALYLLGLAAFQQGDYAEAIAAWQKLLaLLPADAPARL 123
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 889-1016 7.42e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 59.05  E-value: 7.42e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  889 AFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAEAYLSKAEI-F 967
Cdd:COG4783      4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAlL 83

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 1039741869  968 REKDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSKCI 1016
Cdd:COG4783     84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPdEAIAALEKAL 133
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1494-1649 8.58e-10

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 59.20  E-value: 8.58e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1494 MALRDYGIVLLLDAGENIALNTLINRGLIYTELKQYGFALEDFKQAALMSGTSVSLCQATATCHHRIKEFEGAVEFFTRA 1573
Cdd:COG5010      1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039741869 1574 IKINPHYVDAYIGRGNSYMEYSQEDamiQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQKAWIHFTVGIESNP 1649
Cdd:COG5010     81 LQLDPNNPELYYNLALLYSRSGDKD---EAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1059-1320 8.96e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 63.47  E-value: 8.96e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1059 ARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNW-VALYYRACLFRKSSPYRALQDYSVSVLINDGYDNLNCFLHRGILYT 1137
Cdd:COG3914      3 AAALLALAALAAAALLAAAAAAELALAAELEAAaLAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLE 82

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1138 QLKFWMLAICDFETVVSLERNA-------TLAYINIGIIYLEhLDNYTEAFWWFTEAIKVDPLYLQSYICRAETYSKLHK 1210
Cdd:COG3914     83 LAALLLQALGRYEEALALYRRAlalnpdnAEALFNLGNLLLA-LGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGR 161

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1211 LKRAVIELTRAIHLQPDAIHLYIMRGQFLLMMKSYDLAKFTIYQVAEMNKGIIEMSPIQEALIYSFC--ENHDKAIHILE 1288
Cdd:COG3914    162 LEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACdwEVYDRFEELLA 241

                          250       260       270
                   ....*....|....*....|....*....|..
gi 1039741869 1289 GVIASKPDISTYALLAKAQMKAKRIKESVRLF 1320
Cdd:COG3914    242 ALARGPSELSPFALLYLPDDDPAELLALARAW 273
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 892-1326 1.25e-09

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 63.08  E-value: 1.25e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  892 YCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLN---FITKYNKNHAEAYL------- 961
Cdd:TIGR00990  163 YSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTascIIDGFRNEQSAQAVerllkkf 242

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  962 --SKA-EIFREKDITL----AILNYSQAIKCRPKDADlYFKRGEMYEKTNKVLAiddySKCIYYNRKRSDALWKRGMFYF 1034
Cdd:TIGR00990  243 aeSKAkEILETKPENLpsvtFVGNYLQSFRPKPRPAG-LEDSNELDEETGNGQL----QLGLKSPESKADESYEEAARAF 317

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1035 ENGnwigavydfTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRACL-FRKSSPYRALQDY 1113
Cdd:TIGR00990  318 EKA---------LDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMnLELGDPDKAEEDF 388

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1114 SVSVLINDgyDNLNCFLHRGilytQLKFWmlaicdfetvvslernatlayinigiiylehLDNYTEAFWWFTEAIKVDPL 1193
Cdd:TIGR00990  389 DKALKLNS--EDPDIYYHRA----QLHFI-------------------------------KGEFAQAGKDYQKSIDLDPD 431

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1194 YLQSYICRAETYSKLHKLKRAVIELTRAIHLQPDAIHLYIMRGQFLL-------MMKSYDLAKFTIYQVAEMNKGIIEMs 1266
Cdd:TIGR00990  432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLdqnkfdeAIEKFDTAIELEKETKPMYMNVLPL- 510

                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039741869 1267 pIQEAL-IYSFCENHDKAIHILEGVIASKPDiSTYALLAKAQMKAK--RIKESVRLFKKALEL 1326
Cdd:TIGR00990  511 -INKALaLFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQqgDVDEALKLFERAAEL 571
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 879-1016 1.83e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 62.70  E-value: 1.83e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  879 QEIKSEKRNLAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAE 958
Cdd:COG3914     68 AAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAE 147

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  959 AYLSKAEIFRE-KDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSKCI 1016
Cdd:COG3914    148 AYLNLGEALRRlGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLeEAIAAYRRAL 207
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 905-1113 2.35e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 62.32  E-value: 2.35e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  905 LQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAEAYLSKAEI----------FREKDITL 974
Cdd:COG3914     17 LLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAallelaalllQALGRYEE 96

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  975 AILNYSQAIKCRPKDADLYFKRGEMYEKTNKVL-AIDDYSKCIYYNRKRSDALWKRGMFYFENGNWIGAVYDFTSLLKLD 1053
Cdd:COG3914     97 ALALYRRALALNPDNAEALFNLGNLLLALGRLEeALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELD 176

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039741869 1054 PYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPN------NWVALYYRACLFRKSSPYRALQDY 1113
Cdd:COG3914    177 PDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDnadahsNLLFALRQACDWEVYDRFEELLAA 242
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1008-1113 2.72e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 56.94  E-value: 2.72e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1008 AIDDYSKCIYYNRKRSDALWKRGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLD 1087
Cdd:COG4235      2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                           90       100
                   ....*....|....*....|....*..
gi 1039741869 1088 PNNWVALYYRA-CLFRKSSPYRALQDY 1113
Cdd:COG4235     82 PDNPEALYLLGlAAFQQGDYAEAIAAW 108
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 1340-1742 2.75e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 62.41  E-value: 2.75e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1340 SAECLYNLGLCYMEEGNFQMAFESFTKAVKANPEFAEAFYHRGlckvklnkqnsildfnraltlnpkhyQAYLSRvayyg 1419
Cdd:TIGR02917   21 SPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLG--------------------------KIYLAL----- 69

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1420 lkGRYSKAIlncneaiklypesvrayicrgvlKYYNRTYKLGitdlstaikMDKNNYTAYYNRAlcYTKIGEHQMALRDY 1499
Cdd:TIGR02917   70 --GDYAAAE-----------------------KELRKALSLG---------YPKNQVLPLLARA--YLLQGKFQQVLDEL 113

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1500 GIVLLLDAGENIALNTLinRGLIYTELKQYGFALEDFKQAALMSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIKINPH 1579
Cdd:TIGR02917  114 PGKTLLDDEGAAELLAL--RGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPG 191

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1580 YVDAYIGRGNsyMEYSQEDaMIQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQKAWIHFTVGIESNPKSYLAYEGRA 1659
Cdd:TIGR02917  192 NVDALLLKGD--LLLSLGN-IELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKA 268

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1660 VVCLQMSNYfaamqdincaikinstaefltnrgvihefmgqqQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQAT 1739
Cdd:TIGR02917  269 LVDFQKKNY---------------------------------EDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAY 315


                   ...
gi 1039741869 1740 HIF 1742
Cdd:TIGR02917  316 QYL 318
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1618-1738 4.13e-09

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 58.77  E-value: 4.13e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1618 LKARISLGYNLQAQGKFQKAWIHFTVGIESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCAIKINSTAEFLTNRGVIHEF 1697
Cdd:COG4785      6 LALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDS 85

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 1039741869 1698 MGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQA 1738
Cdd:COG4785     86 LGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAA 126
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1162-1327 4.73e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 56.74  E-value: 4.73e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1162 AYINIGIIYLEhLDNYTEAFWWFTEAIKVDPLYLQSYICRAETYSKLHKLKRAVIELTRAIHLQPDAIHLYIMRGQFLLM 1241
Cdd:COG4783      6 ALYALAQALLL-AGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1242 MKSYdlakftiyqvaemnkgiiemspiqealiysfcenhDKAIHILEGVIASKP-DISTYALLAKAQMKAKRIKESVRLF 1320
Cdd:COG4783     85 AGDY-----------------------------------DEALALLEKALKLDPeHPEAYLRLARAYRALGRPDEAIAAL 129


                   ....*..
gi 1039741869 1321 KKALELY 1327
Cdd:COG4783    130 EKALELD 136
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1059-1227 5.21e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 56.35  E-value: 5.21e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1059 ARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRaclfrksspyralqdysvsvlindgydnlncflhrGILYTQ 1138
Cdd:COG4783      6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALL-----------------------------------GEILLQ 50

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1139 LKFWMLAICDFETVVSLERNATLAYINIGIIYLEhLDNYTEAFWWFTEAIKVDPLYLQSYICRAETYSKLHKLKRAVIEL 1218
Cdd:COG4783     51 LGDLDEAIVLLHEALELDPDEPEARLNLGLALLK-AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAAL 129


                   ....*....
gi 1039741869 1219 TRAIHLQPD 1227
Cdd:COG4783    130 EKALELDPD 138
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1398-1506 5.37e-09

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 56.89  E-value: 5.37e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1398 NRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDKNNYT 1477
Cdd:COG5010     44 AAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPN 123

                           90       100
                   ....*....|....*....|....*....
gi 1039741869 1478 AYYNRALCYTKIGEHQMALRDYGIVLLLD 1506
Cdd:COG5010    124 AYSNLAALLLSLGQDDEAKAALQRALGTS 152
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 941-1065 6.13e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 56.17  E-value: 6.13e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  941 DALDDLNFITKYNKNHAEAYLSKAEI-FREKDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSKCIYY 1018
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAyLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTeEAEELLERALAL 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 1039741869 1019 NRKRSDALWKRGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGR 1065
Cdd:COG4235     81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEAS 127
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
992-1091 6.36e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 54.79  E-value: 6.36e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  992 LYFKRGEmYEKtnkvlAIDDYSKCIYYNRKRSDALWKRGMFYFENGNWIGAVyDFTSLLKLDPYNSKARTYRGRAYFKRN 1071
Cdd:COG3063      1 LYLKLGD-LEE-----AEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELG 73

                           90       100
                   ....*....|....*....|
gi 1039741869 1072 LYKQATQDFSAAIHLDPNNW 1091
Cdd:COG3063     74 DYDEALAYLERALELDPSAL 93
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1349-1439 7.80e-09

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 56.51  E-value: 7.80e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1349 LCYMEEGNFQMAFESFTKAVKANPEFAEAFYHRGLCKVKL-NKQNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKA 1427
Cdd:COG5010     62 NLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSgDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEA 141

                           90
                   ....*....|..
gi 1039741869 1428 ILNCNEAIKLYP 1439
Cdd:COG5010    142 KAALQRALGTSP 153
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1300-1405 1.50e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 55.74  E-value: 1.50e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1300 YALLAKAQMKAKRIKESVRLFKKALELYtfsdkgpvatSVSAECLYNLGLCYMEEGNFQMAFESFTKAVKANPEFAEAFY 1379
Cdd:COG5010     57 ESPSDNLYNKLGDFEESLALLEQALQLD----------PNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYS 126

                           90       100
                   ....*....|....*....|....*..
gi 1039741869 1380 HRGLCKVKLNKQNSILD-FNRALTLNP 1405
Cdd:COG5010    127 NLAALLLSLGQDDEAKAaLQRALGTSP 153
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1582-1742 1.60e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 59.62  E-value: 1.60e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1582 DAYIGRGNSYMEYSQEDAMIQAQKDfLKALHLDPSCLKARISLGYNLQAQGKFQKAWIHFTVGIESNPKSYLAYEGRAVV 1661
Cdd:COG3914      9 LAALAAAALLAAAAAAELALAAELE-AAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALL 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1662 CLQMSNYFAAMQDINCAIKIN-STAEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQATH 1740
Cdd:COG3914     88 LQALGRYEEALALYRRALALNpDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIA 167


                   ..
gi 1039741869 1741 IF 1742
Cdd:COG3914    168 AL 169
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 873-989 2.48e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 54.43  E-value: 2.48e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  873 EVEKLTQEIKSEKRNLAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKY 952
Cdd:COG4783     22 EAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKL 101

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1039741869  953 NKNHAEAYLSKAEIFRE-KDITLAILNYSQAIKCRPKD 989
Cdd:COG4783    102 DPEHPEAYLRLARAYRAlGRPDEAIAALEKALELDPDD 139
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 988-1109 2.61e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 54.97  E-value: 2.61e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  988 KDADLYFKRGEMYEKTNKVLAIDDYSKCIYYNRKRSDALWKRGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAY 1067
Cdd:COG5010     19 KLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLY 98

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 1039741869 1068 FKRNLYKQATQDFSAAIHLDPNNWVALYYRACLFRKSSPYRA 1109
Cdd:COG5010     99 SRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDE 140
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1602-1722 3.05e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 53.86  E-value: 3.05e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1602 QAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQKAWIHFTVGIESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCAIKI 1681
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 1039741869 1682 NST-AEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAY 1722
Cdd:COG4235     81 DPDnPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 887-1035 9.74e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 56.93  E-value: 9.74e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  887 NLAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAEAYLSKAEI 966
Cdd:COG3914    110 DNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNA 189

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  967 FRE-KDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKVLAIDDYSKCIYYNRKRSDALWKRGMFYFE 1035
Cdd:COG3914    190 LQDlGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPFALLYLP 259
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 931-1088 1.25e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 53.04  E-value: 1.25e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  931 FIYLFQDKVNDALDDLNFITKYNKNHAEAYLSKAEIFREKDITLAILNYSQAIKCRPKDADLYFKRGEMYEktnkvlAID 1010
Cdd:COG5010      2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEE------SLA 75

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039741869 1011 DYSKCIYYNRKRSDALWKRGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDP 1088
Cdd:COG5010     76 LLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 881-1356 1.48e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 56.63  E-value: 1.48e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  881 IKSEKRNlAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAEAY 960
Cdd:TIGR02917  458 EKKQPDN-ASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAI 536

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  961 LSKAEIFREKDITLAILN-YSQAIKCRPKDADLYFKRGEMYEKTN---KVLAI-DDYSKciyyNRKRSDALWK-RGMFYF 1034
Cdd:TIGR02917  537 LALAGLYLRTGNEEEAVAwLEKAAELNPQEIEPALALAQYYLGKGqlkKALAIlNEAAD----AAPDSPEAWLmLGRAQL 612

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1035 ENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALyyraclfrksspyralqdys 1114
Cdd:TIGR02917  613 AAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQ-------------------- 672

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1115 vsvlindgydnlncflhrgILYTQLkfwMLAICDFETVVSLERNATLAYIN-------IGIIYLEHlDNYTEAFWWFTEA 1187
Cdd:TIGR02917  673 -------------------IGLAQL---LLAAKRTESAKKIAKSLQKQHPKaalgfelEGDLYLRQ-KDYPAAIQAYRKA 729

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1188 IKVDPLYlQSYICRAETYSKLHKLKRAVIELTRAIHLQPDAIHLYIMRGQFLLMMKSYDLAKfTIYQVaemnkgIIEMSP 1267
Cdd:TIGR02917  730 LKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAI-KHYQT------VVKKAP 801

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1268 IQEA----LIYSFCENHD-KAIHILEGVIASKPDISTYA-LLAKAQMKAKRIKESVRLFKKALELytfsdkGPVATSVSa 1341
Cdd:TIGR02917  802 DNAVvlnnLAWLYLELKDpRALEYAERALKLAPNIPAILdTLGWLLVEKGEADRALPLLRKAVNI------APEAAAIR- 874

                          490
                   ....*....|....*
gi 1039741869 1342 eclYNLGLCYMEEGN 1356
Cdd:TIGR02917  875 ---YHLALALLATGR 886
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 1279-1377 3.74e-07

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 50.38  E-value: 3.74e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1279 NHDKAIHILEGVIASKPDiSTYA-----LLAKAQMKAKRIKESVRLFKKALELYTFSDKGPVAtsvsaecLYNLGLCYME 1353
Cdd:COG1729      8 DYDEAIAAFKAFLKRYPN-SPLApdalyWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDA-------LLKLGLSYLE 79

                           90       100
                   ....*....|....*....|....
gi 1039741869 1354 EGNFQMAFESFTKAVKANPEFAEA 1377
Cdd:COG1729     80 LGDYDKARATLEELIKKYPDSEAA 103
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1417-1507 4.30e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 49.78  E-value: 4.30e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1417 YYGLKGRYSKAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGItDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMAL 1496
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                           90
                   ....*....|.
gi 1039741869 1497 RDYGIVLLLDA 1507
Cdd:COG3063     80 AYLERALELDP 90
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1653-1738 6.14e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 51.11  E-value: 6.14e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1653 LAYEGRAVVCLQMSNYFAAMQDINCAIKINST-AEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLH 1731
Cdd:COG5010     55 AIESPSDNLYNKLGDFEESLALLEQALQLDPNnPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLS 134


                   ....*..
gi 1039741869 1732 HRQFSQA 1738
Cdd:COG5010    135 LGQDDEA 141
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1572-1716 6.56e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 50.73  E-value: 6.56e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1572 RAIKINPHYVDAYIGRGNSYMEYSQEDAMIQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQKAWIHFTVGIESNPKS 1651
Cdd:COG5010      8 DRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNN 87

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039741869 1652 YLAYEGRAVVCLQMSNYFAAMQDINCAIKIN-STAEFLTNRGVIHEFMGQQQSAMADYQAAISLNP 1716
Cdd:COG5010     88 PELYYNLALLYSRSGDKDEAKEYYEKALALSpDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 1305-1414 9.78e-07

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 49.22  E-value: 9.78e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1305 KAQMKAKRIKESVRLFKKALELYtfsDKGPVAtsvsAECLYNLGLCYMEEGNFQMAFESFTKAVKANPE---FAEAFYHR 1381
Cdd:COG1729      1 KALLKAGDYDEAIAAFKAFLKRY---PNSPLA----PDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKL 73

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1039741869 1382 GLCKVKL-NKQNSILDFNRALTLNPKHYQAYLSR 1414
Cdd:COG1729     74 GLSYLELgDYDKARATLEELIKKYPDSEAAKEAR 107
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1399-1539 1.14e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 50.34  E-value: 1.14e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1399 RALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDKNNYTA 1478
Cdd:COG5010     11 PLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPEL 90

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039741869 1479 YYNRALCYTKIGEHQMALRDYGIVLLLDAGENIALNtliNRGLIYTELKQYGFALEDFKQA 1539
Cdd:COG5010     91 YYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYS---NLAALLLSLGQDDEAKAALQRA 148
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1645-1738 1.42e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 49.23  E-value: 1.42e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1645 IESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCAIKIN-STAEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYF 1723
Cdd:COG4235     10 LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDpDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALY 89

                           90
                   ....*....|....*
gi 1039741869 1724 NAGNIYLHHRQFSQA 1738
Cdd:COG4235     90 LLGLAAFQQGDYAEA 104
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1522-1619 1.86e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.86  E-value: 1.86e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1522 IYTELKQYGFALEDFKQAALMSGTSVSLCQATATCHHRIKEFEGAVEFfTRAIKINPHYVDAYIGRGNSYMEYSQEDami 1601
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYD--- 76

                           90
                   ....*....|....*...
gi 1039741869 1602 QAQKDFLKALHLDPSCLK 1619
Cdd:COG3063     77 EALAYLERALELDPSALR 94
MamA NF040959
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ...
 1446-1642 2.33e-06

magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.


Pssm-ID: 468889 [Multi-domain]  Cd Length: 204  Bit Score: 50.07  E-value: 2.33e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1446 ICRGVLKYYNRTYKLGitdlstaikmDKNNYTAYYNRALCYTKIGEHQMALRdygivlLLDA---GENIALNTLINRGLI 1522
Cdd:NF040959    17 ILNNMVNGYNRLFSLS----------DRDRAKMYRNKGISHAKKGRYDKAVR------YLEQvarIDPDDVEALYRLGVA 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1523 YTELKQYGFALEDFKqaalmsgTSVSLCQATATCHHR-------IKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYS 1595
Cdd:NF040959    81 YLKTGQYDRAIKVLE-------KVLSLAPDHVKAAYRkgvallkIKDYEKAVEDLEEALEEKPDNFNLNYRLGLALDGLG 153

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*..
gi 1039741869 1596 QEDAMIQAqkdFLKALHLDPSCLKARISLGYNLQAQGKFQKAWIHFT 1642
Cdd:NF040959   154 QYDKAIEA---FQKALELDPNEIKYHQAIGFMYVQKGDHETAAEHFK 197
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 1453-1726 2.69e-06

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 52.29  E-value: 2.69e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1453 YYNRTYKLGITDLSTAIKMdKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDAGENIALNtliNRGLIYTELKQYGFA 1532
Cdd:TIGR00990  138 YRNKDFNKAIKLYSKAIEC-KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALN---RRANAYDGLGKYADA 213

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1533 LEDFKQAALMSG-TSVSLCQATATCHHRIKEFEGAVEFFTRAIKI-NPHYVDAYIG------------------------ 1586
Cdd:TIGR00990  214 LLDLTASCIIDGfRNEQSAQAVERLLKKFAESKAKEILETKPENLpSVTFVGNYLQsfrpkprpagledsneldeetgng 293

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1587 ---RGNSYMEYSQEDAMIQAQKDFLKALHLDPscLKARISLGYNLQA-----QGKFQKAWIHFTVGIESNPKSYLAYEGR 1658
Cdd:TIGR00990  294 qlqLGLKSPESKADESYEEAARAFEKALDLGK--LGEKEAIALNLRGtfkclKGKHLEALADLSKSIELDPRVTQSYIKR 371

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039741869 1659 AVVCLQMSNYFAAMQDINCAIKINST-AEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAG 1726
Cdd:TIGR00990  372 ASMNLELGDPDKAEEDFDKALKLNSEdPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLG 440
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1396-1476 2.97e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.09  E-value: 2.97e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1396 DFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAIlNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDKNN 1475
Cdd:COG3063     14 YYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPSA 92


                   .
gi 1039741869 1476 Y 1476
Cdd:COG3063     93 L 93
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1516-1615 3.49e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 48.08  E-value: 3.49e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1516 LINRGLIYTELKQYGFALEDFKQAALMSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMeys 1595
Cdd:COG4235     20 WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAF--- 96

                           90       100
                   ....*....|....*....|
gi 1039741869 1596 QEDAMIQAQKDFLKALHLDP 1615
Cdd:COG4235     97 QQGDYAEAIAAWQKLLALLP 116
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 1341-1374 3.98e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 44.74  E-value: 3.98e-06
                            10        20        30
                    ....*....|....*....|....*....|....
gi 1039741869  1341 AECLYNLGLCYMEEGNFQMAFESFTKAVKANPEF 1374
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1628-1717 4.13e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 46.70  E-value: 4.13e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1628 LQAQGKFQKAWIHFTVGIESNPKSYLAYEGRAVVCLQMSNYFAAMQdINCAIKINST-AEFLTNRGVIHEFMGQQQSAMA 1706
Cdd:COG3063      2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNnAEALLNLAELLLELGDYDEALA 80

                           90
                   ....*....|.
gi 1039741869 1707 DYQAAISLNPS 1717
Cdd:COG3063     81 YLERALELDPS 91
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1566-1673 4.27e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 47.69  E-value: 4.27e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1566 AVEFFTRAIKINPHYVDAYIGRGNSYMEYSQEDAMIQAqkdFLKALHLDPSCLKARISLGYNLQAQGKFQKAWIHFTVGI 1645
Cdd:COG4235      2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAA---YEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERAL 78

                           90       100
                   ....*....|....*....|....*...
gi 1039741869 1646 ESNPKSYLAYEGRAVVCLQMSNYFAAMQ 1673
Cdd:COG4235     79 ALDPDNPEALYLLGLAAFQQGDYAEAIA 106
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1264-1372 4.30e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 48.42  E-value: 4.30e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1264 EMSPIQEALIYSFCENHDKAIHILEGVIASKPD-ISTYALLAKAQMKAKRIKESVRLFKKALELYtfsdkgpvatSVSAE 1342
Cdd:COG5010     54 FAIESPSDNLYNKLGDFEESLALLEQALQLDPNnPELYYNLALLYSRSGDKDEAKEYYEKALALS----------PDNPN 123

                           90       100       110
                   ....*....|....*....|....*....|
gi 1039741869 1343 CLYNLGLCYMEEGNFQMAFESFTKAVKANP 1372
Cdd:COG5010    124 AYSNLAALLLSLGQDDEAKAALQRALGTSP 153
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1162-1248 5.70e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 47.31  E-value: 5.70e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1162 AYINIGIIYLEhLDNYTEAFWWFTEAIKVDPLYLQSYICRAETYSKLHKLKRAVIELTRAIHLQPDAIHLYIMRGQFLLM 1241
Cdd:COG4235     19 GWLLLGRAYLR-LGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQ 97


                   ....*..
gi 1039741869 1242 MKSYDLA 1248
Cdd:COG4235     98 QGDYAEA 104
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 1592-1746 6.35e-06

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 49.26  E-value: 6.35e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1592 MEYSQEDAMIQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQKAWIHFTVGIESNPKSYLAYEGRAVVCLQMSNYFAA 1671
Cdd:TIGR02521   39 LGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQA 118

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039741869 1672 MQDINCAIKIN---STAEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQATHiFLNVF 1746
Cdd:TIGR02521  119 MQQFEQAIEDPlypQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA-YLERY 195
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 1294-1681 1.24e-05

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 49.98  E-value: 1.24e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1294 KPDISTYALLAKAQMK--AKRIKES------VRLFKKALELYTFS---DKGPVATSvsaeclyNLGLCYMEEGNFQMAFE 1362
Cdd:TIGR00990  109 EIDESSVANLSEEERKkyAAKLKEKgnkayrNKDFNKAIKLYSKAiecKPDPVYYS-------NRAACHNALGDWEKVVE 181

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1363 SFTKAVKANPEFAEAFYHRGLCKVKLNK-QNSILDFNrALTLNPKHYQAYLSRVAYYGLKgrySKAILNCNEAIKLYPES 1441
Cdd:TIGR00990  182 DTTAALELDPDYSKALNRRANAYDGLGKyADALLDLT-ASCIIDGFRNEQSAQAVERLLK---KFAESKAKEILETKPEN 257

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1442 VRAYICRGVLKYYNRTyKLGITDLSTAIKMDK---NNYTAYYNRALcYTKIGE-HQMALRDYGIVLLL-DAGENIALnTL 1516
Cdd:TIGR00990  258 LPSVTFVGNYLQSFRP-KPRPAGLEDSNELDEetgNGQLQLGLKSP-ESKADEsYEEAARAFEKALDLgKLGEKEAI-AL 334

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1517 INRGLIYTELKQYGFALEDFKQA-ALMSGTSVSLCQaTATCHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYS 1595
Cdd:TIGR00990  335 NLRGTFKCLKGKHLEALADLSKSiELDPRVTQSYIK-RASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKG 413

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1596 QEDamiQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQKAWIHFTVGIESNPKSYLAYEGRAVVCLQMSNYFAAMQDI 1675
Cdd:TIGR00990  414 EFA---QAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKF 490


                   ....*.
gi 1039741869 1676 NCAIKI 1681
Cdd:TIGR00990  491 DTAIEL 496
TPR_1 pfam00515
Tetratricopeptide repeat;
1341-1374 1.26e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 43.56  E-value: 1.26e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1039741869 1341 AECLYNLGLCYMEEGNFQMAFESFTKAVKANPEF 1374
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1661-1738 1.73e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 45.16  E-value: 1.73e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039741869 1661 VCLQMSNYFAAMQDINCAIKIN-STAEFLTNRGVIHEFMGQQQSAMAdYQAAISLNPSYSLAYFNAGNIYLHHRQFSQA 1738
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDpDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEA 78
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1273-1373 2.72e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 44.39  E-value: 2.72e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1273 IYSFCENHDKAIHILEGVIASKPD-ISTYALLAKAQMKAKRIKESVRlFKKALELYtfsdkgpvatSVSAECLYNLGLCY 1351
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDnADALNNLGLLLLEQGRYDEAIA-LEKALKLD----------PNNAEALLNLAELL 69

                           90       100
                   ....*....|....*....|..
gi 1039741869 1352 MEEGNFQMAFESFTKAVKANPE 1373
Cdd:COG3063     70 LELGDYDEALAYLERALELDPS 91
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1162-1325 3.98e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 46.83  E-value: 3.98e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1162 AYINIGIIYLEhLDNYTEAFWWFTEAIKVDPLYLQSYICRAETYSKLHKLKRAVIELTRAIHLQPDAIHLYIMRGQFLLM 1241
Cdd:COG4785     75 LYYERGVAYDS-LGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYY 153

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1242 MKSYDLAkftiyqVAEMNKGIIEMSPIQEALIYSFCENHDKAihilegviASKPDISTYALLAKAQMKAKRIKESVRLFK 1321
Cdd:COG4785    154 LGRYELA------IADLEKALELDPNDPERALWLYLAERKLD--------PEKALALLLEDWATAYLLQGDTEEARELFK 219


                   ....
gi 1039741869 1322 KALE 1325
Cdd:COG4785    220 LALA 223
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1462-1585 4.31e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 45.00  E-value: 4.31e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1462 ITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDaGENIALntLINRGLIYTELKQYGFALEDFKQA-A 1540
Cdd:COG4235      3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLD-PDNADA--LLDLAEALLAAGDTEEAEELLERAlA 79

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 1039741869 1541 LMSGTSVSLCQAtATCHHRIKEFEGAVEFFTRAIKINPHYVDAYI 1585
Cdd:COG4235     80 LDPDNPEALYLL-GLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1171-1260 8.16e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 44.95  E-value: 8.16e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1171 LEHLDNYTEAFWWFTEAIKVDPLYLQSYICRAETYSKLHKLKRAVIELTRAIHLQPDAIHLYIMRGQFLLMMKSYDLAKF 1250
Cdd:COG5010     64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143

                           90
                   ....*....|
gi 1039741869 1251 TIYQVAEMNK 1260
Cdd:COG5010    144 ALQRALGTSP 153
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 1346-1491 8.44e-05

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 45.79  E-value: 8.44e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1346 NLGLCYMEEGNFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLnKQNSILD--FNRALTLNPKHYQAYLSRVAYYGLKGR 1423
Cdd:TIGR02521   36 QLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQL-GELEKAEdsFRRALTLNPNNGDVLNNYGTFLCQQGK 114

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1424 YSKAILNCNEAIK--LYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGE 1491
Cdd:TIGR02521  115 YEQAMQQFEQAIEdpLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ 184
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1135-1228 9.11e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.85  E-value: 9.11e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1135 LYTQLKFWMLAICDFETVVSLERNATLAYINIGIIYLEhLDNYTEAFWwFTEAIKVDPLYLQSYICRAETYSKLHKLKRA 1214
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLE-QGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEA 78

                           90
                   ....*....|....
gi 1039741869 1215 VIELTRAIHLQPDA 1228
Cdd:COG3063     79 LAYLERALELDPSA 92
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1393-1473 9.68e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 44.57  E-value: 9.68e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1393 SILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMD 1472
Cdd:COG5010     73 SLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152


                   .
gi 1039741869 1473 K 1473
Cdd:COG5010    153 P 153
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 1341-1373 1.00e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 40.97  E-value: 1.00e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1039741869 1341 AECLYNLGLCYMEEGNFQMAFESFTKAVKANPE 1373
Cdd:pfam07719    1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 1562-1616 1.05e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 46.47  E-value: 1.05e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1039741869 1562 EFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQEDamiQAQKDFLKALHLDPS 1616
Cdd:cd24142     15 NFELALKFLQRALELEPNNVEALELLGEILLELGDVE---EAREVLLRAIELDPD 66
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1186-1377 1.09e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 43.84  E-value: 1.09e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1186 EAIKVDPLYLQSYICRAETYSKLHKLKRAVIELTRAIHLQPDaihlyimrgqfllmmksydlakftiyqvaemnkgiiem 1265
Cdd:COG4235      8 QALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPD-------------------------------------- 49

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1266 spiqealiysfcenhdkaihilegviaskpDISTYALLAKAQMKAKRIKESVRLFKKALELYtfsdkgpvATSVSAecLY 1345
Cdd:COG4235     50 ------------------------------NADALLDLAEALLAAGDTEEAEELLERALALD--------PDNPEA--LY 89

                          170       180       190
                   ....*....|....*....|....*....|..
gi 1039741869 1346 NLGLCYMEEGNFQMAFESFTKAVKANPEFAEA 1377
Cdd:COG4235     90 LLGLAAFQQGDYAEAIAAWQKLLALLPADAPA 121
PRK11189 PRK11189
lipoprotein NlpI; Provisional
 990-1110 1.80e-04

lipoprotein NlpI; Provisional


Pssm-ID: 236875 [Multi-domain]  Cd Length: 296  Bit Score: 45.65  E-value: 1.80e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  990 ADLYFKRGEMYEKTN-KVLAIDDYSKCIYYNRKRSDALWKRGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAYF 1068
Cdd:PRK11189    64 AQLHYERGVLYDSLGlRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY 143

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 1039741869 1069 KRNLYKQATQDFSAAIHLDPNNwvalyyraclfrkssPYRAL 1110
Cdd:PRK11189   144 YGGRYELAQDDLLAFYQDDPND---------------PYRAL 170
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1426-1539 1.86e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 43.07  E-value: 1.86e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1426 KAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLL 1505
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1039741869 1506 DAGENIALNTLinrGLIYTELKQYGFALEDFKQA 1539
Cdd:COG4235     81 DPDNPEALYLL---GLAAFQQGDYAEAIAAWQKL 111
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 967-1066 2.49e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 42.29  E-value: 2.49e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  967 FREKDITLAILNYSQAIKCRPKD---ADLYFKRGEMYEKTNK-VLAIDDYSKCIYY---NRKRSDALWKRGMFYFENGNW 1039
Cdd:COG1729      4 LKAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDyDEAAEAFEKLLKRypdSPKAPDALLKLGLSYLELGDY 83

                           90       100
                   ....*....|....*....|....*..
gi 1039741869 1040 IGAVYDFTSLLKLDPYNSKARTYRGRA 1066
Cdd:COG1729     84 DKARATLEELIKKYPDSEAAKEARARL 110
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1134-1226 2.70e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.41  E-value: 2.70e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1134 ILYTQLKFWMLAICDFETVVSLERNATLAYINIGIIYLEhLDNYTEAFWWFTEAIKVDPLYLQSYICRAETYSKLHKLKR 1213
Cdd:COG5010     62 NLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSR-SGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDE 140

                           90
                   ....*....|...
gi 1039741869 1214 AVIELTRAIHLQP 1226
Cdd:COG5010    141 AKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
898-988 3.61e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 41.31  E-value: 3.61e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  898 IYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALdDLNFITKYNKNHAEAYLSKAEI-FREKDITLAI 976
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELlLELGDYDEAL 79

                           90
                   ....*....|..
gi 1039741869  977 LNYSQAIKCRPK 988
Cdd:COG3063     80 AYLERALELDPS 91
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 1311-1392 4.62e-04

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 43.87  E-value: 4.62e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1311 KRIKESVRLFKKALElytfsDKGPVATSVSAEclyNLGLCYMEEGNFQMAFESFTKAVKANPEFAEAFYhrGLCKVKLNK 1390
Cdd:TIGR02521  113 GKYEQAMQQFEQAIE-----DPLYPQPARSLE---NAGLCALKAGDFDKAEKYLTRALQIDPQRPESLL--ELAELYYLR 182


                   ..
gi 1039741869 1391 QN 1392
Cdd:TIGR02521  183 GQ 184
BamD COG4105
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ...
 1304-1483 5.38e-04

Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443281 [Multi-domain]  Cd Length: 254  Bit Score: 43.72  E-value: 5.38e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1304 AKAQMKAKRIKESVRLFKKALELYTFSDKGPVAtsvsaecLYNLGLCYMEEGNFQMA---FESFTKAVKANPEFAEAFYH 1380
Cdd:COG4105     39 AKEALEKGDYEKAIKLFEELEPRYPGSPYAEQA-------QLMLAYAYYKQGDYEEAiaaADRFIKLYPNSPNADYAYYL 111

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1381 RGLCKVKLNK---------QNSILDFNRALTLNPKH-Y----QAYLS-----------RVA-YYGLKGRYSKAILNCNEA 1434
Cdd:COG4105    112 RGLSYYEQSPdsdrdqtstRKAIEAFQELINRYPDSeYaedaKKRIDelrdklarkelEVArYYLKRGAYVAAINRFQNV 191

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039741869 1435 IKLYPES----------VRAYicrgvlkyynrtYKLGITDLS-TAIKMDKNNY--TAYYNRA 1483
Cdd:COG4105    192 LEDYPDTpaveealyllVEAY------------YALGRYDEAqDAAAVLGKNYpdSPYLKDA 241
TPR_12 pfam13424
Tetratricopeptide repeat;
1297-1373 6.15e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 40.06  E-value: 6.15e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039741869 1297 ISTYALLAKAQMKAKRIKESVRLFKKALELY--TFSDKGPVAtsvsAECLYNLGLCYMEEGNFQMAFESFTKAVKANPE 1373
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIArrLLGPDHPLT----ATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_12 pfam13424
Tetratricopeptide repeat;
1477-1539 7.26e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 40.06  E-value: 7.26e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039741869 1477 TAYYNRALCYTKIGEHQMALRDYGIVL-----LLDAGENIALNTLINRGLIYTELKQYGFALEDFKQA 1539
Cdd:pfam13424    4 TALNNLAAVLRRLGRYDEALELLEKALeiarrLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERA 71
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1485-1578 7.36e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 40.54  E-value: 7.36e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1485 CYTKIGEHQMALRDYGIVLLLDAGENIALNtliNRGLIYTELKQYGFALEdFKQAALMSGTSVSLCQATATCHHRIKEFE 1564
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALN---NLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYD 76

                           90
                   ....*....|....
gi 1039741869 1565 GAVEFFTRAIKINP 1578
Cdd:COG3063     77 EALAYLERALELDP 90
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1066-1196 8.77e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 40.15  E-value: 8.77e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1066 AYFKRNLYKQATQDFSAAIHLDPNNWVALYYRACLfrksspYRALQDYSvsvlindgydnlncflhrgilytqlkfwmLA 1145
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLL------LLEQGRYD-----------------------------EA 45

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1039741869 1146 IcDFETVVSLERNATLAYINIGIIYLEhLDNYTEAFWWFTEAIKVDPLYLQ 1196
Cdd:COG3063     46 I-ALEKALKLDPNNAEALLNLAELLLE-LGDYDEALAYLERALELDPSALR 94
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 1356-1414 9.20e-04

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 43.62  E-value: 9.20e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1356 NFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYLSR 1414
Cdd:PLN03088    17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNfTEAVADANKAIELDPSLAKAYLRK 76
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 1033-1113 1.60e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 39.97  E-value: 1.60e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1033 YFENGNWIGAVYDFTSLLKLDP---YNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWV---ALYYRA-CLFRKSS 1105
Cdd:COG1729      3 LLKAGDYDEAIAAFKAFLKRYPnspLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGlSYLELGD 82


                   ....*...
gi 1039741869 1106 PYRALQDY 1113
Cdd:COG1729     83 YDKARATL 90
TPR_8 pfam13181
Tetratricopeptide repeat;
1341-1373 1.79e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 37.38  E-value: 1.79e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1039741869 1341 AECLYNLGLCYMEEGNFQMAFESFTKAVKANPE 1373
Cdd:pfam13181    1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1059-1193 1.81e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 40.71  E-value: 1.81e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1059 ARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRaclfrksspyralqdysvsvlindgydnlncflhrGILYTQ 1138
Cdd:COG5010     56 IESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNL-----------------------------------ALLYSR 100

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1039741869 1139 LKFWMLAICDFETVVSLERNATLAYINIGIIYLeHLDNYTEAFWWFTEAIKVDPL 1193
Cdd:COG5010    101 SGDKDEAKEYYEKALALSPDNPNAYSNLAALLL-SLGQDDEAKAALQRALGTSPL 154
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 1514-1579 1.91e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 42.23  E-value: 1.91e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039741869 1514 NTLINRGLIYTELKQYGFALEDFKQAALMSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIKINPH 1579
Cdd:cd24142      1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPD 66
TPR_11 pfam13414
TPR repeat;
966-1002 2.04e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 37.45  E-value: 2.04e-03
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 1039741869  966 IFREK-DITLAILNYSQAIKCRPKDADLYFKRGEMYEK 1002
Cdd:pfam13414    3 AYYEQgKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYK 40
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1269-1436 2.08e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 41.82  E-value: 2.08e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1269 QEALIYSFCENHDKAIHILEGVIASKPDIS-TYALLAKAQMKAKRIKESVRLFKKALELytfSDKgpvatsvSAECLYNL 1347
Cdd:COG4785     78 ERGVAYDSLGDYDLAIADFDQALELDPDLAeAYNNRGLAYLLLGDYDAALEDFDRALEL---DPD-------YAYAYLNR 147

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1348 GLCYMEEGNFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLNKQNSILDFNRALtlnPKHYQAylsrvayyglKGRYSKA 1427
Cdd:COG4785    148 GIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPEKALALLLEDW---ATAYLL----------QGDTEEA 214


                   ....*....
gi 1039741869 1428 ILNCNEAIK 1436
Cdd:COG4785    215 RELFKLALA 223
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 862-987 2.13e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 40.71  E-value: 2.13e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869  862 LPPEVIKYYESEVEKLTQEIKSEKRNLAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVND 941
Cdd:COG5010     27 YEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDE 106

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 1039741869  942 ALDDLNFITKYNKNHAEAYLSKAEIF-REKDITLAILNYSQAIKCRP 987
Cdd:COG5010    107 AKEYYEKALALSPDNPNAYSNLAALLlSLGQDDEAKAALQRALGTSP 153
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 1155-1249 2.50e-03

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 42.08  E-value: 2.50e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1155 LERNATLAYINigiiylehlDNYTEAFWWFTEAIKVDPLYLQSYICRAETYSKLHKLKRAVIELTRAIHLQPDAIHLYIM 1234
Cdd:PLN03088     5 LEDKAKEAFVD---------DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLR 75

                           90
                   ....*....|....*
gi 1039741869 1235 RGQFLLMMKSYDLAK 1249
Cdd:PLN03088    76 KGTACMKLEEYQTAK 90
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 13-178 2.76e-03

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 42.24  E-value: 2.76e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869   13 REESYMFKELEKIRQKTKKDyEQLRQRLAAR-------------PTLKARYEDQEKEERPGTAGGSGEKKGHVSWAAKPS 79
Cdd:PTZ00436   133 RNKRNLMEHIHKVKNEKKKE-RQLAEQLAAKrlkdeqhrhkarkQELRKREKDRERARREDAAAAAAAKQKAAAKKAAAP 211

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869   80 SGAQSGERPAAADLQGAPHSARGSPGKPQrfSPRDFYMRSSAFRRHPPYKEA-----PAIAPQVGTTRPVILLRPRSRRK 154
Cdd:PTZ00436   212 SGKKSAKAAAPAKAAAAPAKAAAPPAKAA--AAPAKAAAAPAKAAAPPAKAAappakAAAPPAKAAAPPAKAAAPPAKAA 289

                          170       180
                   ....*....|....*....|....
gi 1039741869  155 RLREKGRGAPVTTRVSKGRAQESP 178
Cdd:PTZ00436   290 APPAKAAAAPAKAAAAPAKAAAAP 313
TPR_11 pfam13414
TPR repeat;
1699-1730 2.76e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 37.07  E-value: 2.76e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1039741869 1699 GQQQSAMADYQAAISLNPSYSLAYFNAGNIYL 1730
Cdd:pfam13414    8 GKYEEAIEAYKKALKLDPDNPEAYYNLGLAYY 39
TPR_1 pfam00515
Tetratricopeptide repeat;
1685-1718 3.03e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 36.63  E-value: 3.03e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1039741869 1685 AEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSY 1718
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1205-1296 3.12e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 38.61  E-value: 3.12e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1205 YSKLHKLKRAVIELTRAIHLQPDAIHLYIMRGQFLLMMKSYDLAKfTIYQVAEMNKGIIEMSpIQEALIYSFCENHDKAI 1284
Cdd:COG3063      2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEAL-LNLAELLLELGDYDEAL 79

                           90
                   ....*....|..
gi 1039741869 1285 HILEGVIASKPD 1296
Cdd:COG3063     80 AYLERALELDPS 91
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1124-1237 3.65e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.22  E-value: 3.65e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741869 1124 DNLNCFLHRGILYTQLKFWMLAICDFETVVSLERNATLAYINIGIIYLeHLDNYTEAFWWFTEAIKVDPLYLQSYICRAE 1203
Cdd:COG4235     15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALL-AAGDTEEAEELLERALALDPDNPEALYLLGL 93

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1039741869 1204 TYSKLHKLKRAVIELTRAIHLQPDAIHLYIMRGQ 1237
Cdd:COG4235     94 AAFQQGDYAEAIAAWQKLLALLPADAPARLLEAS 127
TPR_1 pfam00515
Tetratricopeptide repeat;
1057-1090 3.84e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 36.63  E-value: 3.84e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1039741869 1057 SKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNN 1090
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 1057-1090 5.22e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 36.27  E-value: 5.22e-03
                            10        20        30
                    ....*....|....*....|....*....|....
gi 1039741869  1057 SKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNN 1090
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 1301-1373 9.09e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 40.30  E-value: 9.09e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039741869 1301 ALLAKAQMK--AKRIKESVRLFKKALELYtfsdkgpvatSVSAECLYNLGLCYMEEGNFQMAFESFTKAVKANPE 1373
Cdd:cd24142      2 ELLEKAEELldQGNFELALKFLQRALELE----------PNNVEALELLGEILLELGDVEEAREVLLRAIELDPD 66
TPR_12 pfam13424
Tetratricopeptide repeat;
1512-1576 9.13e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 36.98  E-value: 9.13e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039741869 1512 ALNTLINRGLIYTELKQYGFALEDFKQA-----ALMSGTSVSLCQAT---ATCHHRIKEFEGAVEFFTRAIKI 1576
Cdd:pfam13424    2 VATALNNLAAVLRRLGRYDEALELLEKAleiarRLLGPDHPLTATTLlnlGRLYLELGRYEEALELLERALAL 74
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 1302-1372 9.29e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 36.55  E-value: 9.29e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039741869 1302 LLAKAQMKAKRIKESVRLFKKALELYTfsdkgpvATSVSAECLYNLGLCYMEEGNFQMAFESFTKAVKANP 1372
Cdd:pfam13432    2 ALARAALRAGDYDDAAAALEAALARFP-------ESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAP 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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