NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1039797682|ref|XP_017174016|]
View 

fibronectin type III domain containing protein 3C1 isoform X1 [Mus musculus]

Protein Classification

fibronectin type III domain-containing protein( domain architecture ID 13457450)

fibronectin type III (FN3) domain-containing protein may be involved in specific interactions with other molecules through its FN3 domain

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
970-1202 3.10e-20

Fibronectin type 3 domain [General function prediction only];


:

Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 96.61  E-value: 3.10e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  970 YEVKGLVPATTYFCRVQAVNIVGVGMFGGTAKVTTPGTVPAMVPVLKEVEskvpakLSSTCIAIRWEEPDchGSPITGYN 1049
Cdd:COG3401    194 DGGGDIEPGTTYYYRVAATDTGGESAPSNEVSVTTPTTPPSAPTGLTATA------DTPGSVTLSWDPVT--ESDATGYR 265

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682 1050 IEYGD------KKVVTVKRiTEYVLKDLQPNTTYRIRIQAINHYGL-SPFSPSIRCKTKPLPPEPPQ-LNCVVYGHQSLR 1121
Cdd:COG3401    266 VYRSNsgdgpfTKVATVTT-TSYTDTGLTNGTTYYYRVTAVDAAGNeSAPSNVVSVTTDLTPPAAPSgLTATAVGSSSIT 344

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682 1122 LKWGTVSSkktlANFINYNVL-MEDRSGRFSVIYRGPDVT-HKVQKLSEYTEYKFKIQACNEAG-EGPESDIYTFTTTKS 1198
Cdd:COG3401    345 LSWTASSD----ADVTGYNVYrSTSGGGTYTKIAETVTTTsYTDTGLTPGTTYYYKVTAVDAAGnESAPSEEVSATTASA 420


                   ....
gi 1039797682 1199 PPTA 1202
Cdd:COG3401    421 ASGE 424
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 551-641 3.88e-15

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


:

Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 72.14  E-value: 3.88e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  551 PDPPLAPTLISRTKNSLSLQWKASNDNGSKISSFLLEWDEGKGEDFKSCYSGRLKQ--HKLFKLNPSTKYSFRLAAKNDF 628
Cdd:cd00063      1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDWKEVEVTPGSEtsYTLTGLKPGTEYEFRVRAVNGG 80

                           90
                   ....*....|...
gi 1039797682  629 GCSNFSETAVFYT 641
Cdd:cd00063     81 GESPPSESVTVTT 93
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 915-1004 2.25e-10

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


:

Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 58.66  E-value: 2.25e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  915 PSQCGTPVLTCKGPTCVIVSWEIPKCNGAEIIDYRLQWGQVEDSMHLIYTGPC---LRYEVKGLVPATTYFCRVQAVNIV 991
Cdd:cd00063      1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDWKEVEVTPgseTSYTLTGLKPGTEYEFRVRAVNGG 80

                           90
                   ....*....|...
gi 1039797682  992 GVGMFGGTAKVTT 1004
Cdd:cd00063     81 GESPPSESVTVTT 93
FN3 super family cl27307
Fibronectin type 3 domain [General function prediction only];
708-844 5.10e-09

Fibronectin type 3 domain [General function prediction only];


The actual alignment was detected with superfamily member COG3401:

Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 60.79  E-value: 5.10e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  708 NLQRNTMYKFRIFAYNLEGRSNPSGEVKYTTRPARPGCPnKPYVVGTIHAHQVTIGWDlpkDNGGMNISSYSLEVCENSD 787
Cdd:COG3401    198 DIEPGTTYYYRVAATDTGGESAPSNEVSVTTPTTPPSAP-TGLTATADTPGSVTLSWD---PVTESDATGYRVYRSNSGD 273

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1039797682  788 SAnlWKIIYSGTRQEFLYDDLQAATTYKLRVFCTSPAG-QSRPSDVLTIQTPTLPPES 844
Cdd:COG3401    274 GP--FTKVATVTTTSYTDTGLTNGTTYYYRVTAVDAAGnESAPSNVVSVTTDLTPPAA 329
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 661-738 6.58e-09

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


:

Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 54.42  E-value: 6.58e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039797682  661 SLSLEWCAPTNPNPNDTlTYVLEMEEAKSGLGFK-PKYNGEDLTCTIRNLQRNTMYKFRIFAYNLEGRSNPSGEVKYTT 738
Cdd:cd00063     16 SVTLSWTPPEDDGGPIT-GYVVEYREKGSGDWKEvEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGGESPPSESVTVTT 93
FN3 super family cl27307
Fibronectin type 3 domain [General function prediction only];
337-764 7.55e-08

Fibronectin type 3 domain [General function prediction only];


The actual alignment was detected with superfamily member COG3401:

Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 56.93  E-value: 7.55e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  337 CSDNNNNITDSSISNYNQVTYDETHKPPDAKSIPSCTSQSASNPSVSENAHNPSSINDGLRPSDVASISENDHEETEANM 416
Cdd:COG3401     23 VNALSKAGGSGKTILVYLAVVLSVTTKESPGTLLVAAGLSSGGGLGTGGRAGTTSGVAAVAVAAAPPTATGLTTLTGSGS 102

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  417 GAGDNKQILGENQKKSQSSNASLKEHNTEDRTQPGcFNIEKPVVSNIQTRSATVSWTRKSNEKYDINSSMTHELALSSNG 496
Cdd:COG3401    103 VGGATNTGLTSSDEVPSPAVGTATTATAVAGGAAT-AGTYALGAGLYGVDGANASGTTASSVAGAGVVVSPDTSATAAVA 181

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  497 KNGTYKNIYTGNGVTVvlhDLQPCMVYFLRVTTIRNAEHRSVSEVVSFTTPGCEPDPPLAPTLISRTKNSLSLQWKASND 576
Cdd:COG3401    182 TTSLTVTSTTLVDGGG---DIEPGTTYYYRVAATDTGGESAPSNEVSVTTPTTPPSAPTGLTATADTPGSVTLSWDPVTE 258

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  577 NGskISSFLLEWDEGKGEDFKSCYSGRLKQHKLFKLNPSTKYSFRLAAKNDFGC-SNFSETAVFYTSGKTPPAPLPPKLK 655
Cdd:COG3401    259 SD--ATGYRVYRSNSGDGPFTKVATVTTTSYTDTGLTNGTTYYYRVTAVDAAGNeSAPSNVVSVTTDLTPPAAPSGLTAT 336

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  656 EAGIYSLSLEWCAPTNPnpnDTLTYVLEMEEAKSGLGFKPKYNGEDLTCTIRNLQRNTMYKFRIFAYNLEGR-SNPSGEV 734
Cdd:COG3401    337 AVGSSSITLSWTASSDA---DVTGYNVYRSTSGGGTYTKIAETVTTTSYTDTGLTPGTTYYYKVTAVDAAGNeSAPSEEV 413

                          410       420       430
                   ....*....|....*....|....*....|
gi 1039797682  735 KYTTRPARPGCPNKPYVVGTIHAHQVTIGW 764
Cdd:COG3401    414 SATTASAASGESLTASVDAVPLTDVAGATA 443
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 1200-1296 5.28e-03

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


:

Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 37.48  E-value: 5.28e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682 1200 PTALKAPKVHPLNNNSCEIKWESLEPIKGDPIVYCLQVTTGKKAN----QIYKGPNTSFSFSNYHANSRYRFKVCAgrry 1275
Cdd:cd00063      1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDwkevEVTPGSETSYTLTGLKPGTEYEFRVRA---- 76

                           90       100
                   ....*....|....*....|.
gi 1039797682 1276 ETSNGlqelWGPYSPSALFST 1296
Cdd:cd00063     77 VNGGG----ESPPSESVTVTT 93
 
Name Accession Description Interval E-value
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
970-1202 3.10e-20

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 96.61  E-value: 3.10e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  970 YEVKGLVPATTYFCRVQAVNIVGVGMFGGTAKVTTPGTVPAMVPVLKEVEskvpakLSSTCIAIRWEEPDchGSPITGYN 1049
Cdd:COG3401    194 DGGGDIEPGTTYYYRVAATDTGGESAPSNEVSVTTPTTPPSAPTGLTATA------DTPGSVTLSWDPVT--ESDATGYR 265

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682 1050 IEYGD------KKVVTVKRiTEYVLKDLQPNTTYRIRIQAINHYGL-SPFSPSIRCKTKPLPPEPPQ-LNCVVYGHQSLR 1121
Cdd:COG3401    266 VYRSNsgdgpfTKVATVTT-TSYTDTGLTNGTTYYYRVTAVDAAGNeSAPSNVVSVTTDLTPPAAPSgLTATAVGSSSIT 344

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682 1122 LKWGTVSSkktlANFINYNVL-MEDRSGRFSVIYRGPDVT-HKVQKLSEYTEYKFKIQACNEAG-EGPESDIYTFTTTKS 1198
Cdd:COG3401    345 LSWTASSD----ADVTGYNVYrSTSGGGTYTKIAETVTTTsYTDTGLTPGTTYYYKVTAVDAAGnESAPSEEVSATTASA 420


                   ....
gi 1039797682 1199 PPTA 1202
Cdd:COG3401    421 ASGE 424
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 1026-1100 7.16e-17

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 77.15  E-value: 7.16e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682 1026 LSSTCIAIRWEEPDCHGSPITGYNIEYGDKKVVTVKRI-------TEYVLKDLQPNTTYRIRIQAINHYGLSPFSPSIRC 1098
Cdd:cd00063     12 VTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDWKEVevtpgseTSYTLTGLKPGTEYEFRVRAVNGGGESPPSESVTV 91


                   ..
gi 1039797682 1099 KT 1100
Cdd:cd00063     92 TT 93
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 551-641 3.88e-15

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 72.14  E-value: 3.88e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  551 PDPPLAPTLISRTKNSLSLQWKASNDNGSKISSFLLEWDEGKGEDFKSCYSGRLKQ--HKLFKLNPSTKYSFRLAAKNDF 628
Cdd:cd00063      1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDWKEVEVTPGSEtsYTLTGLKPGTEYEFRVRAVNGG 80

                           90
                   ....*....|...
gi 1039797682  629 GCSNFSETAVFYT 641
Cdd:cd00063     81 GESPPSESVTVTT 93
fn3 pfam00041
Fibronectin type III domain;
1026-1093 7.68e-13

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 65.13  E-value: 7.68e-13
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039797682 1026 LSSTCIAIRWEEPDCHGSPITGYNIEY------GDKKVVTVKR-ITEYVLKDLQPNTTYRIRIQAINHYGLSPFS 1093
Cdd:pfam00041   11 VTSTSLTVSWTPPPDGNGPITGYEVEYrpknsgEPWNEITVPGtTTSVTLTGLKPGTEYEVRVQAVNGGGEGPPS 85
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 1027-1090 8.47e-12

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 62.25  E-value: 8.47e-12
                            10        20        30        40        50        60        70
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039797682  1027 SSTCIAIRWEEP--DCHGSPITGYNIEYGD-----KKVVTVKRITEYVLKDLQPNTTYRIRIQAINHYGLS 1090
Cdd:smart00060   13 TSTSVTLSWEPPpdDGITGYIVGYRVEYREegsewKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGAGEG 83
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 915-1004 2.25e-10

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 58.66  E-value: 2.25e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  915 PSQCGTPVLTCKGPTCVIVSWEIPKCNGAEIIDYRLQWGQVEDSMHLIYTGPC---LRYEVKGLVPATTYFCRVQAVNIV 991
Cdd:cd00063      1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDWKEVEVTPgseTSYTLTGLKPGTEYEFRVRAVNGG 80

                           90
                   ....*....|...
gi 1039797682  992 GVGMFGGTAKVTT 1004
Cdd:cd00063     81 GESPPSESVTVTT 93
fn3 pfam00041
Fibronectin type III domain;
552-634 1.10e-09

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 56.27  E-value: 1.10e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  552 DPPLAPTLISRTKNSLSLQWKASNDNGSKISSFLLE-WDEGKGEDFKSCY-SGRLKQHKLFKLNPSTKYSFRLAAKNDFG 629
Cdd:pfam00041    1 SAPSNLTVTDVTSTSLTVSWTPPPDGNGPITGYEVEyRPKNSGEPWNEITvPGTTTSVTLTGLKPGTEYEVRVQAVNGGG 80


                   ....*
gi 1039797682  630 CSNFS 634
Cdd:pfam00041   81 EGPPS 85
fn3 pfam00041
Fibronectin type III domain;
927-996 2.78e-09

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 55.11  E-value: 2.78e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039797682  927 GPTCVIVSWEIPKCNGAEIIDYRLQWGQV---EDSMHLIYTGPCLRYEVKGLVPATTYFCRVQAVNIVGVGMF 996
Cdd:pfam00041   12 TSTSLTVSWTPPPDGNGPITGYEVEYRPKnsgEPWNEITVPGTTTSVTLTGLKPGTEYEVRVQAVNGGGEGPP 84
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
708-844 5.10e-09

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 60.79  E-value: 5.10e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  708 NLQRNTMYKFRIFAYNLEGRSNPSGEVKYTTRPARPGCPnKPYVVGTIHAHQVTIGWDlpkDNGGMNISSYSLEVCENSD 787
Cdd:COG3401    198 DIEPGTTYYYRVAATDTGGESAPSNEVSVTTPTTPPSAP-TGLTATADTPGSVTLSWD---PVTESDATGYRVYRSNSGD 273

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1039797682  788 SAnlWKIIYSGTRQEFLYDDLQAATTYKLRVFCTSPAG-QSRPSDVLTIQTPTLPPES 844
Cdd:COG3401    274 GP--FTKVATVTTTSYTDTGLTNGTTYYYRVTAVDAAGnESAPSNVVSVTTDLTPPAA 329
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 551-631 5.59e-09

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 54.16  E-value: 5.59e-09
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682   551 PDPPLAPTLISRTKNSLSLQWKASNDNG--SKISSFLLEWDEGKGEDFKSCYSGRLKQHKLFKLNPSTKYSFRLAAKNDF 628
Cdd:smart00060    1 PSPPSNLRVTDVTSTSVTLSWEPPPDDGitGYIVGYRVEYREEGSEWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGA 80


                    ...
gi 1039797682   629 GCS 631
Cdd:smart00060   81 GEG 83
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 661-738 6.58e-09

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 54.42  E-value: 6.58e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039797682  661 SLSLEWCAPTNPNPNDTlTYVLEMEEAKSGLGFK-PKYNGEDLTCTIRNLQRNTMYKFRIFAYNLEGRSNPSGEVKYTT 738
Cdd:cd00063     16 SVTLSWTPPEDDGGPIT-GYVVEYREKGSGDWKEvEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGGESPPSESVTVTT 93
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 752-837 7.18e-09

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 54.42  E-value: 7.18e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  752 VGTIHAHQVTIGWDLPKDNGGmNISSYSLEVCENSDSAnlWKII--YSGTRQEFLYDDLQAATTYKLRVFCTSPAGQSRP 829
Cdd:cd00063      9 VTDVTSTSVTLSWTPPEDDGG-PITGYVVEYREKGSGD--WKEVevTPGSETSYTLTGLKPGTEYEFRVRAVNGGGESPP 85


                   ....*...
gi 1039797682  830 SDVLTIQT 837
Cdd:cd00063     86 SESVTVTT 93
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 915-994 7.27e-09

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 53.77  E-value: 7.27e-09
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682   915 PSQCGTPVLTCKGPTCVIVSWEIPKCNGAE--IIDYRLQWGQVEDS-MHLIYTGPCLRYEVKGLVPATTYFCRVQAVNIV 991
Cdd:smart00060    1 PSPPSNLRVTDVTSTSVTLSWEPPPDDGITgyIVGYRVEYREEGSEwKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGA 80


                    ...
gi 1039797682   992 GVG 994
Cdd:smart00060   81 GEG 83
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
337-764 7.55e-08

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 56.93  E-value: 7.55e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  337 CSDNNNNITDSSISNYNQVTYDETHKPPDAKSIPSCTSQSASNPSVSENAHNPSSINDGLRPSDVASISENDHEETEANM 416
Cdd:COG3401     23 VNALSKAGGSGKTILVYLAVVLSVTTKESPGTLLVAAGLSSGGGLGTGGRAGTTSGVAAVAVAAAPPTATGLTTLTGSGS 102

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  417 GAGDNKQILGENQKKSQSSNASLKEHNTEDRTQPGcFNIEKPVVSNIQTRSATVSWTRKSNEKYDINSSMTHELALSSNG 496
Cdd:COG3401    103 VGGATNTGLTSSDEVPSPAVGTATTATAVAGGAAT-AGTYALGAGLYGVDGANASGTTASSVAGAGVVVSPDTSATAAVA 181

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  497 KNGTYKNIYTGNGVTVvlhDLQPCMVYFLRVTTIRNAEHRSVSEVVSFTTPGCEPDPPLAPTLISRTKNSLSLQWKASND 576
Cdd:COG3401    182 TTSLTVTSTTLVDGGG---DIEPGTTYYYRVAATDTGGESAPSNEVSVTTPTTPPSAPTGLTATADTPGSVTLSWDPVTE 258

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  577 NGskISSFLLEWDEGKGEDFKSCYSGRLKQHKLFKLNPSTKYSFRLAAKNDFGC-SNFSETAVFYTSGKTPPAPLPPKLK 655
Cdd:COG3401    259 SD--ATGYRVYRSNSGDGPFTKVATVTTTSYTDTGLTNGTTYYYRVTAVDAAGNeSAPSNVVSVTTDLTPPAAPSGLTAT 336

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  656 EAGIYSLSLEWCAPTNPnpnDTLTYVLEMEEAKSGLGFKPKYNGEDLTCTIRNLQRNTMYKFRIFAYNLEGR-SNPSGEV 734
Cdd:COG3401    337 AVGSSSITLSWTASSDA---DVTGYNVYRSTSGGGTYTKIAETVTTTSYTDTGLTPGTTYYYKVTAVDAAGNeSAPSEEV 413

                          410       420       430
                   ....*....|....*....|....*....|
gi 1039797682  735 KYTTRPARPGCPNKPYVVGTIHAHQVTIGW 764
Cdd:COG3401    414 SATTASAASGESLTASVDAVPLTDVAGATA 443
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 661-728 1.69e-05

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 44.53  E-value: 1.69e-05
                            10        20        30        40        50        60
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039797682   661 SLSLEWCAPTNPNPNDTLTYVLEMEEAKSGLGFKPKYNGEDLTCTIRNLQRNTMYKFRIFAYNLEGRS 728
Cdd:smart00060   16 SVTLSWEPPPDDGITGYIVGYRVEYREEGSEWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGAGEG 83
PRK08581 PRK08581
amidase domain-containing protein;
271-509 1.39e-04

amidase domain-containing protein;


Pssm-ID: 236304 [Multi-domain]  Cd Length: 619  Bit Score: 46.32  E-value: 1.39e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  271 TVDTAPGTNTDNSTSDTYSLNTVLNTCTIDSAPRNMADNIPDTNTTDTITSSSAHTPSISTSNATFCSDNNNNITDSSIS 350
Cdd:PRK08581    21 TSPTAYADDPQKDSTAKTTSHDSKKSNDDETSKDTSSKDTDKADNNNTSNQDNNDKKFSTIDSSTSDSNNIIDFIYKNLP 100

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  351 NYNQVTYDETHKPPDAKSIPSCTSQSASNPSVSENAHNPSSINDGLRPSDVASISENDHEETEANmgagdNKQILGENQK 430
Cdd:PRK08581   101 QTNINQLLTKNKYDDNYSLTTLIQNLFNLNSDISDYEQPRNSEKSTNDSNKNSDSSIKNDTDTQS-----SKQDKADNQK 175

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039797682  431 KSQSSNASLKEHNTEDRTQPGCFNIEKPVVSNIQTRSATVSwTRKSNEKYDiNSSMTHELALSSNGKNGTYKNiYTGNG 509
Cdd:PRK08581   176 APSSNNTKPSTSNKQPNSPKPTQPNQSNSQPASDDTANQKS-SSKDNQSMS-DSALDSILDQYSEDAKKTQKD-YASQS 251
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 751-827 7.13e-04

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 39.91  E-value: 7.13e-04
                            10        20        30        40        50        60        70
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039797682   751 VVGTIHAHQVTIGWDLPKDNGGMN-ISSYSLEVCENSDSanlWKIIYSGTRQ-EFLYDDLQAATTYKLRVFCTSPAGQS 827
Cdd:smart00060    8 RVTDVTSTSVTLSWEPPPDDGITGyIVGYRVEYREEGSE---WKEVNVTPSStSYTLTGLKPGTEYEFRVRAVNGAGEG 83
fn3 pfam00041
Fibronectin type III domain;
660-731 3.62e-03

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 37.78  E-value: 3.62e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039797682  660 YSLSLEWCAPTNPNPNDTlTYVLEMEEAKSGLGFKPKYNGEDL-TCTIRNLQRNTMYKFRIFAYNLEGRSNPS 731
Cdd:pfam00041   14 TSLTVSWTPPPDGNGPIT-GYEVEYRPKNSGEPWNEITVPGTTtSVTLTGLKPGTEYEVRVQAVNGGGEGPPS 85
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 1200-1296 5.28e-03

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 37.48  E-value: 5.28e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682 1200 PTALKAPKVHPLNNNSCEIKWESLEPIKGDPIVYCLQVTTGKKAN----QIYKGPNTSFSFSNYHANSRYRFKVCAgrry 1275
Cdd:cd00063      1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDwkevEVTPGSETSYTLTGLKPGTEYEFRVRA---- 76

                           90       100
                   ....*....|....*....|.
gi 1039797682 1276 ETSNGlqelWGPYSPSALFST 1296
Cdd:cd00063     77 VNGGG----ESPPSESVTVTT 93
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
1166-1271 6.82e-03

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 40.76  E-value: 6.82e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682 1166 LSEYTEYKFKIQACNEAGEGPESDIYTFTTTKSPPTALKAPKVHPLNNNSCEIKWES--LEPIKGdPIVYcLQVTTGKKA 1243
Cdd:COG3401    199 IEPGTTYYYRVAATDTGGESAPSNEVSVTTPTTPPSAPTGLTATADTPGSVTLSWDPvtESDATG-YRVY-RSNSGDGPF 276

                           90       100
                   ....*....|....*....|....*...
gi 1039797682 1244 NQIYKGPNTSFSFSNYHANSRYRFKVCA 1271
Cdd:COG3401    277 TKVATVTTTSYTDTGLTNGTTYYYRVTA 304
 
Name Accession Description Interval E-value
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
970-1202 3.10e-20

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 96.61  E-value: 3.10e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  970 YEVKGLVPATTYFCRVQAVNIVGVGMFGGTAKVTTPGTVPAMVPVLKEVEskvpakLSSTCIAIRWEEPDchGSPITGYN 1049
Cdd:COG3401    194 DGGGDIEPGTTYYYRVAATDTGGESAPSNEVSVTTPTTPPSAPTGLTATA------DTPGSVTLSWDPVT--ESDATGYR 265

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682 1050 IEYGD------KKVVTVKRiTEYVLKDLQPNTTYRIRIQAINHYGL-SPFSPSIRCKTKPLPPEPPQ-LNCVVYGHQSLR 1121
Cdd:COG3401    266 VYRSNsgdgpfTKVATVTT-TSYTDTGLTNGTTYYYRVTAVDAAGNeSAPSNVVSVTTDLTPPAAPSgLTATAVGSSSIT 344

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682 1122 LKWGTVSSkktlANFINYNVL-MEDRSGRFSVIYRGPDVT-HKVQKLSEYTEYKFKIQACNEAG-EGPESDIYTFTTTKS 1198
Cdd:COG3401    345 LSWTASSD----ADVTGYNVYrSTSGGGTYTKIAETVTTTsYTDTGLTPGTTYYYKVTAVDAAGnESAPSEEVSATTASA 420


                   ....
gi 1039797682 1199 PPTA 1202
Cdd:COG3401    421 ASGE 424
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 1026-1100 7.16e-17

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 77.15  E-value: 7.16e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682 1026 LSSTCIAIRWEEPDCHGSPITGYNIEYGDKKVVTVKRI-------TEYVLKDLQPNTTYRIRIQAINHYGLSPFSPSIRC 1098
Cdd:cd00063     12 VTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDWKEVevtpgseTSYTLTGLKPGTEYEFRVRAVNGGGESPPSESVTV 91


                   ..
gi 1039797682 1099 KT 1100
Cdd:cd00063     92 TT 93
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 551-641 3.88e-15

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 72.14  E-value: 3.88e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  551 PDPPLAPTLISRTKNSLSLQWKASNDNGSKISSFLLEWDEGKGEDFKSCYSGRLKQ--HKLFKLNPSTKYSFRLAAKNDF 628
Cdd:cd00063      1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDWKEVEVTPGSEtsYTLTGLKPGTEYEFRVRAVNGG 80

                           90
                   ....*....|...
gi 1039797682  629 GCSNFSETAVFYT 641
Cdd:cd00063     81 GESPPSESVTVTT 93
fn3 pfam00041
Fibronectin type III domain;
1026-1093 7.68e-13

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 65.13  E-value: 7.68e-13
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039797682 1026 LSSTCIAIRWEEPDCHGSPITGYNIEY------GDKKVVTVKR-ITEYVLKDLQPNTTYRIRIQAINHYGLSPFS 1093
Cdd:pfam00041   11 VTSTSLTVSWTPPPDGNGPITGYEVEYrpknsgEPWNEITVPGtTTSVTLTGLKPGTEYEVRVQAVNGGGEGPPS 85
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
926-1178 4.36e-12

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 70.42  E-value: 4.36e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  926 KGPTCVIVSWEIPKCNGAEiiDYRLQWGQVED-SMHLIYTGPCLRYEVKGLVPATTYFCRVQAVNIVGV-GMFGGTAKVT 1003
Cdd:COG3401    244 DTPGSVTLSWDPVTESDAT--GYRVYRSNSGDgPFTKVATVTTTSYTDTGLTNGTTYYYRVTAVDAAGNeSAPSNVVSVT 321

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682 1004 TPGTVPAmVPVLKEVESKVPAKlsstcIAIRWEEPDchGSPITGYNIEYGDKKVVTVKRI------TEYVLKDLQPNTTY 1077
Cdd:COG3401    322 TDLTPPA-APSGLTATAVGSSS-----ITLSWTASS--DADVTGYNVYRSTSGGGTYTKIaetvttTSYTDTGLTPGTTY 393

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682 1078 RIRIQAINHYGL-SPFSPSIRCKTKPLPPEPPQLNCVVYGHQSLRLKWGTVSSKKTLANFINYNVLMEDRSGRFSVIYRG 1156
Cdd:COG3401    394 YYKVTAVDAAGNeSAPSEEVSATTASAASGESLTASVDAVPLTDVAGATAAASAASNPGVSAAVLADGGDTGNAVPFTTT 473

                          250       260
                   ....*....|....*....|..
gi 1039797682 1157 PDVTHKVQKLSEYTEYKFKIQA 1178
Cdd:COG3401    474 SSTVTATTTDTTTANLSVTTGS 495
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 1027-1090 8.47e-12

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 62.25  E-value: 8.47e-12
                            10        20        30        40        50        60        70
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039797682  1027 SSTCIAIRWEEP--DCHGSPITGYNIEYGD-----KKVVTVKRITEYVLKDLQPNTTYRIRIQAINHYGLS 1090
Cdd:smart00060   13 TSTSVTLSWEPPpdDGITGYIVGYRVEYREegsewKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGAGEG 83
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
957-1222 1.43e-11

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 68.88  E-value: 1.43e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  957 DSMHLIYTGPCLRYEVKGLVPATTYFCRVQAVNIVGVGMFGGTAKVTTPGTVPAMVPVLKEVESKVPAKLSStciAIRWE 1036
Cdd:COG3401     88 PPTATGLTTLTGSGSVGGATNTGLTSSDEVPSPAVGTATTATAVAGGAATAGTYALGAGLYGVDGANASGTT---ASSVA 164

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682 1037 EPDCHGSPITGYNIEYGDKKVVTVKRITEYVLKDLQPNTTYRIRIQAINHYGLSPFSPSIRCKTKPLPPEPPQ-LNCVVY 1115
Cdd:COG3401    165 GAGVVVSPDTSATAAVATTSLTVTSTTLVDGGGDIEPGTTYYYRVAATDTGGESAPSNEVSVTTPTTPPSAPTgLTATAD 244

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682 1116 GHQSLRLKWgtvsSKKTLANFINYNVL-MEDRSGRFSVIYRGPDVTHKVQKLSEYTEYKFKIQACNEAG-EGPESDIYTF 1193
Cdd:COG3401    245 TPGSVTLSW----DPVTESDATGYRVYrSNSGDGPFTKVATVTTTSYTDTGLTNGTTYYYRVTAVDAAGnESAPSNVVSV 320

                          250       260
                   ....*....|....*....|....*....
gi 1039797682 1194 TTTKSPPTALKAPKVHPLNNNSCEIKWES 1222
Cdd:COG3401    321 TTDLTPPAAPSGLTATAVGSSSITLSWTA 349
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 915-1004 2.25e-10

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 58.66  E-value: 2.25e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  915 PSQCGTPVLTCKGPTCVIVSWEIPKCNGAEIIDYRLQWGQVEDSMHLIYTGPC---LRYEVKGLVPATTYFCRVQAVNIV 991
Cdd:cd00063      1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDWKEVEVTPgseTSYTLTGLKPGTEYEFRVRAVNGG 80

                           90
                   ....*....|...
gi 1039797682  992 GVGMFGGTAKVTT 1004
Cdd:cd00063     81 GESPPSESVTVTT 93
fn3 pfam00041
Fibronectin type III domain;
552-634 1.10e-09

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 56.27  E-value: 1.10e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  552 DPPLAPTLISRTKNSLSLQWKASNDNGSKISSFLLE-WDEGKGEDFKSCY-SGRLKQHKLFKLNPSTKYSFRLAAKNDFG 629
Cdd:pfam00041    1 SAPSNLTVTDVTSTSLTVSWTPPPDGNGPITGYEVEyRPKNSGEPWNEITvPGTTTSVTLTGLKPGTEYEVRVQAVNGGG 80


                   ....*
gi 1039797682  630 CSNFS 634
Cdd:pfam00041   81 EGPPS 85
fn3 pfam00041
Fibronectin type III domain;
927-996 2.78e-09

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 55.11  E-value: 2.78e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039797682  927 GPTCVIVSWEIPKCNGAEIIDYRLQWGQV---EDSMHLIYTGPCLRYEVKGLVPATTYFCRVQAVNIVGVGMF 996
Cdd:pfam00041   12 TSTSLTVSWTPPPDGNGPITGYEVEYRPKnsgEPWNEITVPGTTTSVTLTGLKPGTEYEVRVQAVNGGGEGPP 84
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 1104-1195 3.20e-09

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 55.20  E-value: 3.20e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682 1104 PPEPPQLNCVVYGHQSLRLKWgtVSSKKTLANFINYNVLMEDRSGRFSVIYRGPDVT---HKVQKLSEYTEYKFKIQACN 1180
Cdd:cd00063      1 PSPPTNLRVTDVTSTSVTLSW--TPPEDDGGPITGYVVEYREKGSGDWKEVEVTPGSetsYTLTGLKPGTEYEFRVRAVN 78

                           90
                   ....*....|....*
gi 1039797682 1181 EAGEGPESDIYTFTT 1195
Cdd:cd00063     79 GGGESPPSESVTVTT 93
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
708-844 5.10e-09

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 60.79  E-value: 5.10e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  708 NLQRNTMYKFRIFAYNLEGRSNPSGEVKYTTRPARPGCPnKPYVVGTIHAHQVTIGWDlpkDNGGMNISSYSLEVCENSD 787
Cdd:COG3401    198 DIEPGTTYYYRVAATDTGGESAPSNEVSVTTPTTPPSAP-TGLTATADTPGSVTLSWD---PVTESDATGYRVYRSNSGD 273

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1039797682  788 SAnlWKIIYSGTRQEFLYDDLQAATTYKLRVFCTSPAG-QSRPSDVLTIQTPTLPPES 844
Cdd:COG3401    274 GP--FTKVATVTTTSYTDTGLTNGTTYYYRVTAVDAAGnESAPSNVVSVTTDLTPPAA 329
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 551-631 5.59e-09

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 54.16  E-value: 5.59e-09
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682   551 PDPPLAPTLISRTKNSLSLQWKASNDNG--SKISSFLLEWDEGKGEDFKSCYSGRLKQHKLFKLNPSTKYSFRLAAKNDF 628
Cdd:smart00060    1 PSPPSNLRVTDVTSTSVTLSWEPPPDDGitGYIVGYRVEYREEGSEWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGA 80


                    ...
gi 1039797682   629 GCS 631
Cdd:smart00060   81 GEG 83
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 661-738 6.58e-09

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 54.42  E-value: 6.58e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039797682  661 SLSLEWCAPTNPNPNDTlTYVLEMEEAKSGLGFK-PKYNGEDLTCTIRNLQRNTMYKFRIFAYNLEGRSNPSGEVKYTT 738
Cdd:cd00063     16 SVTLSWTPPEDDGGPIT-GYVVEYREKGSGDWKEvEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGGESPPSESVTVTT 93
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 752-837 7.18e-09

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 54.42  E-value: 7.18e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  752 VGTIHAHQVTIGWDLPKDNGGmNISSYSLEVCENSDSAnlWKII--YSGTRQEFLYDDLQAATTYKLRVFCTSPAGQSRP 829
Cdd:cd00063      9 VTDVTSTSVTLSWTPPEDDGG-PITGYVVEYREKGSGD--WKEVevTPGSETSYTLTGLKPGTEYEFRVRAVNGGGESPP 85


                   ....*...
gi 1039797682  830 SDVLTIQT 837
Cdd:cd00063     86 SESVTVTT 93
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 915-994 7.27e-09

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 53.77  E-value: 7.27e-09
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682   915 PSQCGTPVLTCKGPTCVIVSWEIPKCNGAE--IIDYRLQWGQVEDS-MHLIYTGPCLRYEVKGLVPATTYFCRVQAVNIV 991
Cdd:smart00060    1 PSPPSNLRVTDVTSTSVTLSWEPPPDDGITgyIVGYRVEYREEGSEwKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGA 80


                    ...
gi 1039797682   992 GVG 994
Cdd:smart00060   81 GEG 83
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
612-842 2.26e-08

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 58.48  E-value: 2.26e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  612 LNPSTKYSFRLAAKNDFGCSNFSETAVFYTSGKTPPAPLPPKLKEAGIYSLSLEWcaptNPNPNDTLT-YVLEMEEAKSG 690
Cdd:COG3401    199 IEPGTTYYYRVAATDTGGESAPSNEVSVTTPTTPPSAPTGLTATADTPGSVTLSW----DPVTESDATgYRVYRSNSGDG 274

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  691 lGFKPKYNGEDLTCTIRNLQRNTMYKFRIFAYNLEG-RSNPSGEVKYTTRPARPGCPnkPYVVGTIHAH-QVTIGWDLPK 768
Cdd:COG3401    275 -PFTKVATVTTTSYTDTGLTNGTTYYYRVTAVDAAGnESAPSNVVSVTTDLTPPAAP--SGLTATAVGSsSITLSWTASS 351

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039797682  769 DNggmNISSYSLEVCENSDSAnlWKIIYSGTRQEFLYD-DLQAATTYKLRVFCTSPAG-QSRPSDVLTIQTPTLPP 842
Cdd:COG3401    352 DA---DVTGYNVYRSTSGGGT--YTKIAETVTTTSYTDtGLTPGTTYYYKVTAVDAAGnESAPSEEVSATTASAAS 422
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
265-782 3.81e-08

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 57.70  E-value: 3.81e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  265 DSLCPYTVDTAPGTNTDNSTSDTYSLNTVLNTCTIDSAPRNMADNIPDT--------NTTDTITSSSAHTPSISTSNATF 336
Cdd:COG3401     38 VYLAVVLSVTTKESPGTLLVAAGLSSGGGLGTGGRAGTTSGVAAVAVAAapptatglTTLTGSGSVGGATNTGLTSSDEV 117

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  337 CSD---NNNNITDSSISNYNQVTYDETHKPPDAKSIPSCTSQSASNPSVSENAHNPSSINDGLrPSDVASISENDHEETE 413
Cdd:COG3401    118 PSPavgTATTATAVAGGAATAGTYALGAGLYGVDGANASGTTASSVAGAGVVVSPDTSATAAV-ATTSLTVTSTTLVDGG 196

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  414 ANMGAGDNKQILGENQKKSQSSNASLKEHNTEDRTQPgcfniEKP---VVSNIQTRSATVSWTRKSNE---KYDInssmt 487
Cdd:COG3401    197 GDIEPGTTYYYRVAATDTGGESAPSNEVSVTTPTTPP-----SAPtglTATADTPGSVTLSWDPVTESdatGYRV----- 266

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  488 helaLSSNGKNGTYKNIYTGNGVTVVLHDLQPCMVYFLRVTTIRNAEHRSV-SEVVSFTTPGCEPDPPLAPTLISRTKNS 566
Cdd:COG3401    267 ----YRSNSGDGPFTKVATVTTTSYTDTGLTNGTTYYYRVTAVDAAGNESApSNVVSVTTDLTPPAAPSGLTATAVGSSS 342

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  567 LSLQWKASNDNGskISSFLLEWDEGKGEDFKSCYSGRLK-QHKLFKLNPSTKYSFRLAAKNDFGCSNFSETAVFYTSGKT 645
Cdd:COG3401    343 ITLSWTASSDAD--VTGYNVYRSTSGGGTYTKIAETVTTtSYTDTGLTPGTTYYYKVTAVDAAGNESAPSEEVSATTASA 420

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  646 PPAPLPPKLKEAGIYSLSLEWCAPTNPNPNDTLTYVLEMEEAKSGLGFKPKYNGEDLTCTIRNLQRNTMYKFRIFAYNLE 725
Cdd:COG3401    421 ASGESLTASVDAVPLTDVAGATAAASAASNPGVSAAVLADGGDTGNAVPFTTTSSTVTATTTDTTTANLSVTTGSLVGGS 500

                          490       500       510       520       530
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1039797682  726 GRSNPSGEVKYttrparPGCPNKPYVVGTIHAHQVTIGWDLPKDNGGMNISSYSLEV 782
Cdd:COG3401    501 GASSVTNSVSV------IGASAAAAVGGAPDGTPNVTGASPVTVGASTGDVLITDLV 551
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
337-764 7.55e-08

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 56.93  E-value: 7.55e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  337 CSDNNNNITDSSISNYNQVTYDETHKPPDAKSIPSCTSQSASNPSVSENAHNPSSINDGLRPSDVASISENDHEETEANM 416
Cdd:COG3401     23 VNALSKAGGSGKTILVYLAVVLSVTTKESPGTLLVAAGLSSGGGLGTGGRAGTTSGVAAVAVAAAPPTATGLTTLTGSGS 102

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  417 GAGDNKQILGENQKKSQSSNASLKEHNTEDRTQPGcFNIEKPVVSNIQTRSATVSWTRKSNEKYDINSSMTHELALSSNG 496
Cdd:COG3401    103 VGGATNTGLTSSDEVPSPAVGTATTATAVAGGAAT-AGTYALGAGLYGVDGANASGTTASSVAGAGVVVSPDTSATAAVA 181

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  497 KNGTYKNIYTGNGVTVvlhDLQPCMVYFLRVTTIRNAEHRSVSEVVSFTTPGCEPDPPLAPTLISRTKNSLSLQWKASND 576
Cdd:COG3401    182 TTSLTVTSTTLVDGGG---DIEPGTTYYYRVAATDTGGESAPSNEVSVTTPTTPPSAPTGLTATADTPGSVTLSWDPVTE 258

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  577 NGskISSFLLEWDEGKGEDFKSCYSGRLKQHKLFKLNPSTKYSFRLAAKNDFGC-SNFSETAVFYTSGKTPPAPLPPKLK 655
Cdd:COG3401    259 SD--ATGYRVYRSNSGDGPFTKVATVTTTSYTDTGLTNGTTYYYRVTAVDAAGNeSAPSNVVSVTTDLTPPAAPSGLTAT 336

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  656 EAGIYSLSLEWCAPTNPnpnDTLTYVLEMEEAKSGLGFKPKYNGEDLTCTIRNLQRNTMYKFRIFAYNLEGR-SNPSGEV 734
Cdd:COG3401    337 AVGSSSITLSWTASSDA---DVTGYNVYRSTSGGGTYTKIAETVTTTSYTDTGLTPGTTYYYKVTAVDAAGNeSAPSEEV 413

                          410       420       430
                   ....*....|....*....|....*....|
gi 1039797682  735 KYTTRPARPGCPNKPYVVGTIHAHQVTIGW 764
Cdd:COG3401    414 SATTASAASGESLTASVDAVPLTDVAGATA 443
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 1104-1185 2.22e-07

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 49.92  E-value: 2.22e-07
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  1104 PPEPPQLNCVVYGHQSLRLKWGTVSSKKTLANFINYNVLMEDRSGRFSVIYRGPDVT-HKVQKLSEYTEYKFKIQACNEA 1182
Cdd:smart00060    1 PSPPSNLRVTDVTSTSVTLSWEPPPDDGITGYIVGYRVEYREEGSEWKEVNVTPSSTsYTLTGLKPGTEYEFRVRAVNGA 80


                    ...
gi 1039797682  1183 GEG 1185
Cdd:smart00060   81 GEG 83
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 661-728 1.69e-05

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 44.53  E-value: 1.69e-05
                            10        20        30        40        50        60
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039797682   661 SLSLEWCAPTNPNPNDTLTYVLEMEEAKSGLGFKPKYNGEDLTCTIRNLQRNTMYKFRIFAYNLEGRS 728
Cdd:smart00060   16 SVTLSWEPPPDDGITGYIVGYRVEYREEGSEWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGAGEG 83
PRK08581 PRK08581
amidase domain-containing protein;
271-509 1.39e-04

amidase domain-containing protein;


Pssm-ID: 236304 [Multi-domain]  Cd Length: 619  Bit Score: 46.32  E-value: 1.39e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  271 TVDTAPGTNTDNSTSDTYSLNTVLNTCTIDSAPRNMADNIPDTNTTDTITSSSAHTPSISTSNATFCSDNNNNITDSSIS 350
Cdd:PRK08581    21 TSPTAYADDPQKDSTAKTTSHDSKKSNDDETSKDTSSKDTDKADNNNTSNQDNNDKKFSTIDSSTSDSNNIIDFIYKNLP 100

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682  351 NYNQVTYDETHKPPDAKSIPSCTSQSASNPSVSENAHNPSSINDGLRPSDVASISENDHEETEANmgagdNKQILGENQK 430
Cdd:PRK08581   101 QTNINQLLTKNKYDDNYSLTTLIQNLFNLNSDISDYEQPRNSEKSTNDSNKNSDSSIKNDTDTQS-----SKQDKADNQK 175

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039797682  431 KSQSSNASLKEHNTEDRTQPGCFNIEKPVVSNIQTRSATVSwTRKSNEKYDiNSSMTHELALSSNGKNGTYKNiYTGNG 509
Cdd:PRK08581   176 APSSNNTKPSTSNKQPNSPKPTQPNQSNSQPASDDTANQKS-SSKDNQSMS-DSALDSILDQYSEDAKKTQKD-YASQS 251
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 751-827 7.13e-04

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 39.91  E-value: 7.13e-04
                            10        20        30        40        50        60        70
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039797682   751 VVGTIHAHQVTIGWDLPKDNGGMN-ISSYSLEVCENSDSanlWKIIYSGTRQ-EFLYDDLQAATTYKLRVFCTSPAGQS 827
Cdd:smart00060    8 RVTDVTSTSVTLSWEPPPDDGITGyIVGYRVEYREEGSE---WKEVNVTPSStSYTLTGLKPGTEYEFRVRAVNGAGEG 83
fn3 pfam00041
Fibronectin type III domain;
1105-1188 1.04e-03

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 39.32  E-value: 1.04e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682 1105 PEPPQLNCVVYGHQSLRLKWGTVSSKKtlANFINYNVLMEDRSG-----RFSViyRGPDVTHKVQKLSEYTEYKFKIQAC 1179
Cdd:pfam00041    1 SAPSNLTVTDVTSTSLTVSWTPPPDGN--GPITGYEVEYRPKNSgepwnEITV--PGTTTSVTLTGLKPGTEYEVRVQAV 76


                   ....*....
gi 1039797682 1180 NEAGEGPES 1188
Cdd:pfam00041   77 NGGGEGPPS 85
fn3 pfam00041
Fibronectin type III domain;
660-731 3.62e-03

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 37.78  E-value: 3.62e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039797682  660 YSLSLEWCAPTNPNPNDTlTYVLEMEEAKSGLGFKPKYNGEDL-TCTIRNLQRNTMYKFRIFAYNLEGRSNPS 731
Cdd:pfam00041   14 TSLTVSWTPPPDGNGPIT-GYEVEYRPKNSGEPWNEITVPGTTtSVTLTGLKPGTEYEVRVQAVNGGGEGPPS 85
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 1200-1296 5.28e-03

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 37.48  E-value: 5.28e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682 1200 PTALKAPKVHPLNNNSCEIKWESLEPIKGDPIVYCLQVTTGKKAN----QIYKGPNTSFSFSNYHANSRYRFKVCAgrry 1275
Cdd:cd00063      1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDwkevEVTPGSETSYTLTGLKPGTEYEFRVRA---- 76

                           90       100
                   ....*....|....*....|.
gi 1039797682 1276 ETSNGlqelWGPYSPSALFST 1296
Cdd:cd00063     77 VNGGG----ESPPSESVTVTT 93
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
1166-1271 6.82e-03

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 40.76  E-value: 6.82e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039797682 1166 LSEYTEYKFKIQACNEAGEGPESDIYTFTTTKSPPTALKAPKVHPLNNNSCEIKWES--LEPIKGdPIVYcLQVTTGKKA 1243
Cdd:COG3401    199 IEPGTTYYYRVAATDTGGESAPSNEVSVTTPTTPPSAPTGLTATADTPGSVTLSWDPvtESDATG-YRVY-RSNSGDGPF 276

                           90       100
                   ....*....|....*....|....*...
gi 1039797682 1244 NQIYKGPNTSFSFSNYHANSRYRFKVCA 1271
Cdd:COG3401    277 TKVATVTTTSYTDTGLTNGTTYYYRVTA 304
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH