NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1039799893|ref|XP_017174203|]
View 

X-linked lymphocyte-regulated protein PM1-like [Mus musculus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Cor1 super family cl04763
Cor1/Xlr/Xmr conserved region; Cor1 is a component of the chromosome core in the meiotic ...
 78-181 3.08e-24

Cor1/Xlr/Xmr conserved region; Cor1 is a component of the chromosome core in the meiotic prophase chromosomes. Xlr is a lymphoid cell specific protein. Xlm is abundantly transcribed in testis in a tissue-specific and developmentally regulated manner. The protein is located in the nuclei of spermatocytes, early in the prophase of the first meiotic division, and later becomes concentrated in the XY nuclear subregion where it is in particular associated with the axes of sex chromosomes.


The actual alignment was detected with superfamily member pfam04803:

Pssm-ID: 461436  Cd Length: 124  Bit Score: 91.91  E-value: 3.08e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039799893  78 KTLHIKRKWMETYVKESFKCSNQKLERFCKTNERERKNINNKFCEQYITTFQKSDMDVQKFNEEKEKSVNSCQKEQQALK 157
Cdd:pfam04803   1 KALLAKRKRLETFTKASLKSSNEKIEHVWKTQQEQRQKLNEEYSQQFLTLFQQWDTDVQKTKEQEEKLSNLFQQQQKLFQ 80

                          90       100
                  ....*....|....*....|....*..
gi 1039799893 158 LSKCSQNQTLEAVKEMHE---KSMEVL 181
Cdd:pfam04803  81 QARVVQSQRLKTIKQLYDqflKSLEDL 107
 
Name Accession Description Interval E-value
Cor1 pfam04803
Cor1/Xlr/Xmr conserved region; Cor1 is a component of the chromosome core in the meiotic ...
 78-181 3.08e-24

Cor1/Xlr/Xmr conserved region; Cor1 is a component of the chromosome core in the meiotic prophase chromosomes. Xlr is a lymphoid cell specific protein. Xlm is abundantly transcribed in testis in a tissue-specific and developmentally regulated manner. The protein is located in the nuclei of spermatocytes, early in the prophase of the first meiotic division, and later becomes concentrated in the XY nuclear subregion where it is in particular associated with the axes of sex chromosomes.


Pssm-ID: 461436  Cd Length: 124  Bit Score: 91.91  E-value: 3.08e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039799893  78 KTLHIKRKWMETYVKESFKCSNQKLERFCKTNERERKNINNKFCEQYITTFQKSDMDVQKFNEEKEKSVNSCQKEQQALK 157
Cdd:pfam04803   1 KALLAKRKRLETFTKASLKSSNEKIEHVWKTQQEQRQKLNEEYSQQFLTLFQQWDTDVQKTKEQEEKLSNLFQQQQKLFQ 80

                          90       100
                  ....*....|....*....|....*..
gi 1039799893 158 LSKCSQNQTLEAVKEMHE---KSMEVL 181
Cdd:pfam04803  81 QARVVQSQRLKTIKQLYDqflKSLEDL 107
 
Name Accession Description Interval E-value
Cor1 pfam04803
Cor1/Xlr/Xmr conserved region; Cor1 is a component of the chromosome core in the meiotic ...
 78-181 3.08e-24

Cor1/Xlr/Xmr conserved region; Cor1 is a component of the chromosome core in the meiotic prophase chromosomes. Xlr is a lymphoid cell specific protein. Xlm is abundantly transcribed in testis in a tissue-specific and developmentally regulated manner. The protein is located in the nuclei of spermatocytes, early in the prophase of the first meiotic division, and later becomes concentrated in the XY nuclear subregion where it is in particular associated with the axes of sex chromosomes.


Pssm-ID: 461436  Cd Length: 124  Bit Score: 91.91  E-value: 3.08e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039799893  78 KTLHIKRKWMETYVKESFKCSNQKLERFCKTNERERKNINNKFCEQYITTFQKSDMDVQKFNEEKEKSVNSCQKEQQALK 157
Cdd:pfam04803   1 KALLAKRKRLETFTKASLKSSNEKIEHVWKTQQEQRQKLNEEYSQQFLTLFQQWDTDVQKTKEQEEKLSNLFQQQQKLFQ 80

                          90       100
                  ....*....|....*....|....*..
gi 1039799893 158 LSKCSQNQTLEAVKEMHE---KSMEVL 181
Cdd:pfam04803  81 QARVVQSQRLKTIKQLYDqflKSLEDL 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH