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Conserved domains on  [gi|1039772086|ref|XP_017176489|]
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transcription termination factor 1a, mitochondrial isoform X1 [Mus musculus]

Protein Classification

mTERF domain-containing protein( domain architecture ID 10495059)

mTERF (mitochondrial transcription termination factor) domain-containing protein may function as a transcription termination factor that binds promoter DNA and regulates mitochondrial replication and transcription

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
mTERF pfam02536
mTERF; This family contains one sequence of known function Human mitochondrial transcription ...
60-373 1.76e-82

mTERF; This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerization role as in other leucine zippers.


:

Pssm-ID: 460581 [Multi-domain]  Cd Length: 313  Bit Score: 254.06  E-value: 1.76e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039772086  60 LSNLVTMGV---DIDMARRRQPGVFNKAVTNEQELKL-FLLSKGASDKVIGSIISRYPRAIT-RTPESLSKRWDLWRKIM 134
Cdd:pfam02536   1 LSLLESLGVtdsQISKILTRYPPVLHADVEKDLAPKLqFLLSLGASSSDLGKILSKYPRILGfKLEETMSTSVDFLKEIG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039772086 135 AsDLEIVNILERSPESFFRSNNNLNLENNIKFLCSVGLTHKCLCRLLTNAPRtfSNSLNLNKQM--------VEFLQETG 206
Cdd:pfam02536  81 V-DKSSIGGALRSWPSILGMRVGNNIKNNVEYLRELGVPQKLLARLLISRPQ--LLALDLVYLMkpktfeekVEFLKELG 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039772086 207 MSlghndpRDFVRKIISKNPSILIQS-TKRVKTNIEFLQsTFNLNkRDLLLLICGPGARILDLSNdctkKNYTNIRERLL 285
Cdd:pfam02536 158 FS------VEDVWKIIKKCPEILGLSiEKKLKKKIEFLK-KCGLS-EEELPRVIKKYPQILSLSE----RTILNRVEFLL 225
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039772086 286 SLGCSEEEVQRFVLSYLNMVFLSEKKFNDKIDCLIEE-KISASQIIENPRILDSSI-NTLKTRIRELSHAGYDLSTSSia 363
Cdd:pfam02536 226 GLGFSKEEVAKMVKRFPQLLGLSIEVLKPKLEFLVKEmKWPLKEVVEYPRVFGYSLeKRIKPRIKALVSKGLECSLSW-- 303
                         330
                  ....*....|
gi 1039772086 364 LLSWSQRRYE 373
Cdd:pfam02536 304 MLACSDERFL 313
 
Name Accession Description Interval E-value
mTERF pfam02536
mTERF; This family contains one sequence of known function Human mitochondrial transcription ...
60-373 1.76e-82

mTERF; This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerization role as in other leucine zippers.


Pssm-ID: 460581 [Multi-domain]  Cd Length: 313  Bit Score: 254.06  E-value: 1.76e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039772086  60 LSNLVTMGV---DIDMARRRQPGVFNKAVTNEQELKL-FLLSKGASDKVIGSIISRYPRAIT-RTPESLSKRWDLWRKIM 134
Cdd:pfam02536   1 LSLLESLGVtdsQISKILTRYPPVLHADVEKDLAPKLqFLLSLGASSSDLGKILSKYPRILGfKLEETMSTSVDFLKEIG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039772086 135 AsDLEIVNILERSPESFFRSNNNLNLENNIKFLCSVGLTHKCLCRLLTNAPRtfSNSLNLNKQM--------VEFLQETG 206
Cdd:pfam02536  81 V-DKSSIGGALRSWPSILGMRVGNNIKNNVEYLRELGVPQKLLARLLISRPQ--LLALDLVYLMkpktfeekVEFLKELG 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039772086 207 MSlghndpRDFVRKIISKNPSILIQS-TKRVKTNIEFLQsTFNLNkRDLLLLICGPGARILDLSNdctkKNYTNIRERLL 285
Cdd:pfam02536 158 FS------VEDVWKIIKKCPEILGLSiEKKLKKKIEFLK-KCGLS-EEELPRVIKKYPQILSLSE----RTILNRVEFLL 225
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039772086 286 SLGCSEEEVQRFVLSYLNMVFLSEKKFNDKIDCLIEE-KISASQIIENPRILDSSI-NTLKTRIRELSHAGYDLSTSSia 363
Cdd:pfam02536 226 GLGFSKEEVAKMVKRFPQLLGLSIEVLKPKLEFLVKEmKWPLKEVVEYPRVFGYSLeKRIKPRIKALVSKGLECSLSW-- 303
                         330
                  ....*....|
gi 1039772086 364 LLSWSQRRYE 373
Cdd:pfam02536 304 MLACSDERFL 313
PLN03196 PLN03196
MOC1-like protein; Provisional
196-344 2.08e-03

MOC1-like protein; Provisional


Pssm-ID: 215628 [Multi-domain]  Cd Length: 487  Bit Score: 40.08  E-value: 2.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039772086 196 KQMVEFLQETGMslghndPRDFVRKIISKNPSIL-IQSTKRVKTNIEFLQStFNLNKRDLLLLIcgpgARILD-LSNDCT 273
Cdd:PLN03196  233 KPKVDYLESLGL------PRLAVARILEKRPYILgFDLEETVKPNVECLLE-FGVRKEALPSVI----AQYPDiLGLDLK 301
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039772086 274 KKNYTNIRERLLSLGCSEEEVQRFVLSYLNMVFLSEKKFNDKIDCLIEEKISASQI----IENPRILDSSINTLK 344
Cdd:PLN03196  302 AKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLNRNVALKHVEFLRGRGFSAQDVakmvVRCPQILALNLEIMK 376
Mterf smart00733
Mitochondrial termination factor repeats; Human mitochondrial termination factor is a ...
219-245 9.61e-03

Mitochondrial termination factor repeats; Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.


Pssm-ID: 197848  Cd Length: 31  Bit Score: 33.56  E-value: 9.61e-03
                           10        20
                   ....*....|....*....|....*..
gi 1039772086  219 RKIISKNPSILIQSTKRVKTNIEFLQS 245
Cdd:smart00733   1 GKIVKKFPQILGYSEKKLKPKVEFLKE 27
 
Name Accession Description Interval E-value
mTERF pfam02536
mTERF; This family contains one sequence of known function Human mitochondrial transcription ...
60-373 1.76e-82

mTERF; This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerization role as in other leucine zippers.


Pssm-ID: 460581 [Multi-domain]  Cd Length: 313  Bit Score: 254.06  E-value: 1.76e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039772086  60 LSNLVTMGV---DIDMARRRQPGVFNKAVTNEQELKL-FLLSKGASDKVIGSIISRYPRAIT-RTPESLSKRWDLWRKIM 134
Cdd:pfam02536   1 LSLLESLGVtdsQISKILTRYPPVLHADVEKDLAPKLqFLLSLGASSSDLGKILSKYPRILGfKLEETMSTSVDFLKEIG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039772086 135 AsDLEIVNILERSPESFFRSNNNLNLENNIKFLCSVGLTHKCLCRLLTNAPRtfSNSLNLNKQM--------VEFLQETG 206
Cdd:pfam02536  81 V-DKSSIGGALRSWPSILGMRVGNNIKNNVEYLRELGVPQKLLARLLISRPQ--LLALDLVYLMkpktfeekVEFLKELG 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039772086 207 MSlghndpRDFVRKIISKNPSILIQS-TKRVKTNIEFLQsTFNLNkRDLLLLICGPGARILDLSNdctkKNYTNIRERLL 285
Cdd:pfam02536 158 FS------VEDVWKIIKKCPEILGLSiEKKLKKKIEFLK-KCGLS-EEELPRVIKKYPQILSLSE----RTILNRVEFLL 225
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039772086 286 SLGCSEEEVQRFVLSYLNMVFLSEKKFNDKIDCLIEE-KISASQIIENPRILDSSI-NTLKTRIRELSHAGYDLSTSSia 363
Cdd:pfam02536 226 GLGFSKEEVAKMVKRFPQLLGLSIEVLKPKLEFLVKEmKWPLKEVVEYPRVFGYSLeKRIKPRIKALVSKGLECSLSW-- 303
                         330
                  ....*....|
gi 1039772086 364 LLSWSQRRYE 373
Cdd:pfam02536 304 MLACSDERFL 313
PLN03196 PLN03196
MOC1-like protein; Provisional
196-344 2.08e-03

MOC1-like protein; Provisional


Pssm-ID: 215628 [Multi-domain]  Cd Length: 487  Bit Score: 40.08  E-value: 2.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039772086 196 KQMVEFLQETGMslghndPRDFVRKIISKNPSIL-IQSTKRVKTNIEFLQStFNLNKRDLLLLIcgpgARILD-LSNDCT 273
Cdd:PLN03196  233 KPKVDYLESLGL------PRLAVARILEKRPYILgFDLEETVKPNVECLLE-FGVRKEALPSVI----AQYPDiLGLDLK 301
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039772086 274 KKNYTNIRERLLSLGCSEEEVQRFVLSYLNMVFLSEKKFNDKIDCLIEEKISASQI----IENPRILDSSINTLK 344
Cdd:PLN03196  302 AKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLNRNVALKHVEFLRGRGFSAQDVakmvVRCPQILALNLEIMK 376
Mterf smart00733
Mitochondrial termination factor repeats; Human mitochondrial termination factor is a ...
219-245 9.61e-03

Mitochondrial termination factor repeats; Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.


Pssm-ID: 197848  Cd Length: 31  Bit Score: 33.56  E-value: 9.61e-03
                           10        20
                   ....*....|....*....|....*..
gi 1039772086  219 RKIISKNPSILIQSTKRVKTNIEFLQS 245
Cdd:smart00733   1 GKIVKKFPQILGYSEKKLKPKVEFLKE 27
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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