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Conserved domains on  [gi|1039777687|ref|XP_017177554|]
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secretin isoform X1 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Hormone_2 super family cl27746
Peptide hormone; This family contains glucagon, GIP, secretin and VIP.
 32-58 7.89e-06

Peptide hormone; This family contains glucagon, GIP, secretin and VIP.


The actual alignment was detected with superfamily member smart00070:

Pssm-ID: 474966  Cd Length: 27  Bit Score: 38.26  E-value: 7.89e-06
                          10        20
                  ....*....|....*....|....*..
gi 1039777687  32 HSDGMFTSELSRLQDSARLQRLLQGLV 58
Cdd:smart00070  1 HADGTFTSDYSKYLDQLAAKKFLQWLM 27
 
Name Accession Description Interval E-value
GLUCA smart00070
Glucagon like hormones;
32-58 7.89e-06

Glucagon like hormones;


Pssm-ID: 128384  Cd Length: 27  Bit Score: 38.26  E-value: 7.89e-06
                          10        20
                  ....*....|....*....|....*..
gi 1039777687  32 HSDGMFTSELSRLQDSARLQRLLQGLV 58
Cdd:smart00070  1 HADGTFTSDYSKYLDQLAAKKFLQWLM 27
Hormone_2 pfam00123
Peptide hormone; This family contains glucagon, GIP, secretin and VIP.
 32-59 4.87e-04

Peptide hormone; This family contains glucagon, GIP, secretin and VIP.


Pssm-ID: 459681  Cd Length: 28  Bit Score: 33.96  E-value: 4.87e-04
                         10        20
                 ....*....|....*....|....*...
gi 1039777687 32 HSDGMFTSELSRLQDSARLQRLLQGLVG 59
Cdd:pfam00123  1 HADGTFTSDYSKVLDQLAAKKFLQWLMN 28
 
Name Accession Description Interval E-value
GLUCA smart00070
Glucagon like hormones;
32-58 7.89e-06

Glucagon like hormones;


Pssm-ID: 128384  Cd Length: 27  Bit Score: 38.26  E-value: 7.89e-06
                          10        20
                  ....*....|....*....|....*..
gi 1039777687  32 HSDGMFTSELSRLQDSARLQRLLQGLV 58
Cdd:smart00070  1 HADGTFTSDYSKYLDQLAAKKFLQWLM 27
Hormone_2 pfam00123
Peptide hormone; This family contains glucagon, GIP, secretin and VIP.
 32-59 4.87e-04

Peptide hormone; This family contains glucagon, GIP, secretin and VIP.


Pssm-ID: 459681  Cd Length: 28  Bit Score: 33.96  E-value: 4.87e-04
                         10        20
                 ....*....|....*....|....*...
gi 1039777687 32 HSDGMFTSELSRLQDSARLQRLLQGLVG 59
Cdd:pfam00123  1 HADGTFTSDYSKVLDQLAAKKFLQWLMN 28
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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