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Conserved domains on  [gi|1046843541|ref|XP_017444951|]
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large ribosomal subunit protein bL36m isoform X1 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L36 pfam00444
Ribosomal protein L36;
60-97 5.50e-16

Ribosomal protein L36;


:

Pssm-ID: 459811  Cd Length: 38  Bit Score: 65.22  E-value: 5.50e-16
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 1046843541 60 FKTKGVIKKRCRDCYMVKRRGRWFVLCKTNPKHKQRQM 97
Cdd:pfam00444  1 MKVRSSLKKRCEDCKVVRRKGRVYVICKKNPRHKQRQG 38
 
Name Accession Description Interval E-value
Ribosomal_L36 pfam00444
Ribosomal protein L36;
60-97 5.50e-16

Ribosomal protein L36;


Pssm-ID: 459811  Cd Length: 38  Bit Score: 65.22  E-value: 5.50e-16
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 1046843541 60 FKTKGVIKKRCRDCYMVKRRGRWFVLCKTNPKHKQRQM 97
Cdd:pfam00444  1 MKVRSSLKKRCEDCKVVRRKGRVYVICKKNPRHKQRQG 38
RpmJ COG0257
Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 ...
 61-96 1.68e-12

Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440027  Cd Length: 38  Bit Score: 56.29  E-value: 1.68e-12
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 1046843541 61 KTKGVIKKRCRDCYMVKRRGRWFVLCKTNPKHKQRQ 96
Cdd:COG0257    2 KVRASVKKICRDCKVVRRKGRVYVICKKNPRHKQRQ 37
rpmJ PRK00831
50S ribosomal protein L36; Validated
 66-96 1.92e-08

50S ribosomal protein L36; Validated


Pssm-ID: 179138  Cd Length: 41  Bit Score: 46.14  E-value: 1.92e-08
                         10        20        30
                 ....*....|....*....|....*....|.
gi 1046843541 66 IKKRCRDCYMVKRRGRWFVLCKTNPKHKQRQ 96
Cdd:PRK00831  10 LKNRHRDCQVVRRKGRVYVINKKNPRFKARQ 40
rpmJ_bact TIGR01022
ribosomal protein L36, bacterial type; Proteins found by this model occur exclusively in ...
 61-96 3.59e-05

ribosomal protein L36, bacterial type; Proteins found by this model occur exclusively in bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130094  Cd Length: 37  Bit Score: 37.46  E-value: 3.59e-05
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 1046843541 61 KTKGVIKKRCRDCYMVKRRGRWFVLCKtNPKHKQRQ 96
Cdd:TIGR01022  2 KVRASVKKICEKCKIIKRKGVVRVICK-NPKHKQRQ 36
 
Name Accession Description Interval E-value
Ribosomal_L36 pfam00444
Ribosomal protein L36;
60-97 5.50e-16

Ribosomal protein L36;


Pssm-ID: 459811  Cd Length: 38  Bit Score: 65.22  E-value: 5.50e-16
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 1046843541 60 FKTKGVIKKRCRDCYMVKRRGRWFVLCKTNPKHKQRQM 97
Cdd:pfam00444  1 MKVRSSLKKRCEDCKVVRRKGRVYVICKKNPRHKQRQG 38
RpmJ COG0257
Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 ...
 61-96 1.68e-12

Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440027  Cd Length: 38  Bit Score: 56.29  E-value: 1.68e-12
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 1046843541 61 KTKGVIKKRCRDCYMVKRRGRWFVLCKTNPKHKQRQ 96
Cdd:COG0257    2 KVRASVKKICRDCKVVRRKGRVYVICKKNPRHKQRQ 37
rpmJ PRK00831
50S ribosomal protein L36; Validated
 66-96 1.92e-08

50S ribosomal protein L36; Validated


Pssm-ID: 179138  Cd Length: 41  Bit Score: 46.14  E-value: 1.92e-08
                         10        20        30
                 ....*....|....*....|....*....|.
gi 1046843541 66 IKKRCRDCYMVKRRGRWFVLCKTNPKHKQRQ 96
Cdd:PRK00831  10 LKNRHRDCQVVRRKGRVYVINKKNPRFKARQ 40
rpmJ PRK00465
50S ribosomal protein L36; Reviewed
 61-96 4.61e-08

50S ribosomal protein L36; Reviewed


Pssm-ID: 179039  Cd Length: 37  Bit Score: 44.94  E-value: 4.61e-08
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 1046843541 61 KTKGVIKKRCRDCYMVKRRGRWFVLCkTNPKHKQRQ 96
Cdd:PRK00465   2 KVRASVKKICEKCKVIKRKGVVRVIC-ENPKHKQRQ 36
rpmJ_bact TIGR01022
ribosomal protein L36, bacterial type; Proteins found by this model occur exclusively in ...
 61-96 3.59e-05

ribosomal protein L36, bacterial type; Proteins found by this model occur exclusively in bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130094  Cd Length: 37  Bit Score: 37.46  E-value: 3.59e-05
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 1046843541 61 KTKGVIKKRCRDCYMVKRRGRWFVLCKtNPKHKQRQ 96
Cdd:TIGR01022  2 KVRASVKKICEKCKIIKRKGVVRVICK-NPKHKQRQ 36
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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