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Conserved domains on  [gi|1046887866|ref|XP_017448744|]
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transmembrane protein 268 isoform X1 [Rattus norvegicus]

Protein Classification

transmembrane protein 268( domain architecture ID 10632264)

transmembrane protein 268 (TMEM268) is a DUF4481 domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DUF4481 pfam14800
Domain of unknown function (DUF4481);
39-328 7.51e-164

Domain of unknown function (DUF4481);


:

Pssm-ID: 464322  Cd Length: 293  Bit Score: 458.74  E-value: 7.51e-164
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046887866  39 HNGQVLSVLRIDNTCAPISFDLRVAEEQLQAWGIQVPAEQYRSLAESALLEPQVRRYIIYNSRPMRLAFAVVFYVLVWAN 118
Cdd:pfam14800   1 SNGQVLLVLSTDNTCASPSFDLDACREKLETWGIQVPAEQYRSLLETALLEPEVRRYMFYNSRPFRLALAPVFYVVLWCN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046887866 119 IYSTSQMFALGNQWAGVLLATLAAVSLTLTLVLVFERQQRKANTNTDLRLVAANGALLRHRVLLGVTDTVEGCQSVIQLW 198
Cdd:pfam14800  81 LYSTLQLYSLGNHWVLCLLVSLVSILLTVALILIFHRSNRKLNVNTDVRLAAVNEALMKHKLLLGVTDWVDGCQGVLQLW 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046887866 199 FVYFDLENCVQFLSDHVQEMKRSQESLLRSRLSQLCVVMETGVSPVVERPED--LEDSPLLP-RTPGPQERPLTQTELYQ 275
Cdd:pfam14800 161 FVYFDLEPCLQALSELLEELTTSTQSKLRSRLSQLCVVVETAVSPPEAEGEDgeEEEAPLLPsGGPSLQKGDLTVTENVG 240
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1046887866 276 LVPEAEPEEMARQLLAVFGGYYTRLLVTSQLPQPMGTRHMDSARIPCPCQLIE 328
Cdd:pfam14800 241 LIPEAPPQELAQQLLMVFSGLYVRLLVTGQLPGASHTSHAGSAGIPCLCQLIE 293
 
Name Accession Description Interval E-value
DUF4481 pfam14800
Domain of unknown function (DUF4481);
39-328 7.51e-164

Domain of unknown function (DUF4481);


Pssm-ID: 464322  Cd Length: 293  Bit Score: 458.74  E-value: 7.51e-164
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046887866  39 HNGQVLSVLRIDNTCAPISFDLRVAEEQLQAWGIQVPAEQYRSLAESALLEPQVRRYIIYNSRPMRLAFAVVFYVLVWAN 118
Cdd:pfam14800   1 SNGQVLLVLSTDNTCASPSFDLDACREKLETWGIQVPAEQYRSLLETALLEPEVRRYMFYNSRPFRLALAPVFYVVLWCN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046887866 119 IYSTSQMFALGNQWAGVLLATLAAVSLTLTLVLVFERQQRKANTNTDLRLVAANGALLRHRVLLGVTDTVEGCQSVIQLW 198
Cdd:pfam14800  81 LYSTLQLYSLGNHWVLCLLVSLVSILLTVALILIFHRSNRKLNVNTDVRLAAVNEALMKHKLLLGVTDWVDGCQGVLQLW 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046887866 199 FVYFDLENCVQFLSDHVQEMKRSQESLLRSRLSQLCVVMETGVSPVVERPED--LEDSPLLP-RTPGPQERPLTQTELYQ 275
Cdd:pfam14800 161 FVYFDLEPCLQALSELLEELTTSTQSKLRSRLSQLCVVVETAVSPPEAEGEDgeEEEAPLLPsGGPSLQKGDLTVTENVG 240
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1046887866 276 LVPEAEPEEMARQLLAVFGGYYTRLLVTSQLPQPMGTRHMDSARIPCPCQLIE 328
Cdd:pfam14800 241 LIPEAPPQELAQQLLMVFSGLYVRLLVTGQLPGASHTSHAGSAGIPCLCQLIE 293
 
Name Accession Description Interval E-value
DUF4481 pfam14800
Domain of unknown function (DUF4481);
39-328 7.51e-164

Domain of unknown function (DUF4481);


Pssm-ID: 464322  Cd Length: 293  Bit Score: 458.74  E-value: 7.51e-164
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046887866  39 HNGQVLSVLRIDNTCAPISFDLRVAEEQLQAWGIQVPAEQYRSLAESALLEPQVRRYIIYNSRPMRLAFAVVFYVLVWAN 118
Cdd:pfam14800   1 SNGQVLLVLSTDNTCASPSFDLDACREKLETWGIQVPAEQYRSLLETALLEPEVRRYMFYNSRPFRLALAPVFYVVLWCN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046887866 119 IYSTSQMFALGNQWAGVLLATLAAVSLTLTLVLVFERQQRKANTNTDLRLVAANGALLRHRVLLGVTDTVEGCQSVIQLW 198
Cdd:pfam14800  81 LYSTLQLYSLGNHWVLCLLVSLVSILLTVALILIFHRSNRKLNVNTDVRLAAVNEALMKHKLLLGVTDWVDGCQGVLQLW 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046887866 199 FVYFDLENCVQFLSDHVQEMKRSQESLLRSRLSQLCVVMETGVSPVVERPED--LEDSPLLP-RTPGPQERPLTQTELYQ 275
Cdd:pfam14800 161 FVYFDLEPCLQALSELLEELTTSTQSKLRSRLSQLCVVVETAVSPPEAEGEDgeEEEAPLLPsGGPSLQKGDLTVTENVG 240
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1046887866 276 LVPEAEPEEMARQLLAVFGGYYTRLLVTSQLPQPMGTRHMDSARIPCPCQLIE 328
Cdd:pfam14800 241 LIPEAPPQELAQQLLMVFSGLYVRLLVTGQLPGASHTSHAGSAGIPCLCQLIE 293
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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