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Conserved domains on  [gi|1046870072|ref|XP_017456782|]
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zinc finger protein 23 isoform X3 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
212-618 6.73e-14

FOG: Zn-finger [General function prediction only];


:

Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 74.35  E-value: 6.73e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046870072 212 KPFKCVECGKCFSYSSHYITHQTIHSGEKPYQCKV--CGKAFSVNGSLVRHQRIHTGEKPYQC--KECGTGFGCSSAYIT 287
Cdd:COG5048    32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYsgCDKSFSRPLELSRHLRTHHNNPSDLNskSLPLSNSKASSSSLS 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046870072 288 HQRTHTgekPYECSDCGKAFNVNAKLIQHQRIHTGEKPYECdVCGKGFRCSTQLRQHQSIHtgeKPHRCSECGKGFTKNA 367
Cdd:COG5048   112 SSSSNS---NDNNLLSSHSLPPSSRDPQLPDLLSISNLRNN-PLPGNNSSSVNTPQSNSLH---PPLPANSLSKDPSSNL 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046870072 368 KLIQHQRVHTGEKPYACSDCGKTFSAKGKLIQHQRIHTGERPYECSECGKSFRCNSQLRQHLRIHTGEKPYKCNECGKAF 447
Cdd:COG5048   185 SLLISSNVSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLPLTTNSQLSPKSLLSQSPSSLSSSDSSSSASESPRSS 264

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046870072 448 NVNAKLMQHRRTHTGE-------KPFECNECGKCFTSKRNLLDHQRT--HTGE--KPYQCKE--CGKAFSINAKLTRHQQ 514
Cdd:COG5048   265 LPTASSQSSSPNESDSssekgfsLPIKSKQCNISFSRSSPLTRHLRSvnHSGEslKPFSCPYslCGKLFSRNDALKRHIL 344

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046870072 515 IHTREKPFKCMEC-------EKAFSCSSDYIVHQRIHTGEKPFQC--SECGKAFHVNAHLIRHQRSHTGEKP--FRCMEC 583
Cdd:COG5048   345 LHTSISPAKEKLLnssskfsPLLNNEPPQSLQQYKDLKNDKKSETlsNSCIRNFKRDSNLSLHIITHLSFRPynCKNPPC 424

                         410       420       430
                  ....*....|....*....|....*....|....*
gi 1046870072 584 GKGFSLSSDCIIHQTVHTWKKPYVCNICGKTFRFS 618
Cdd:COG5048   425 SKSFNRHYNLIPHKKIHTNHAPLLCSILKSFRRDL 459
KRAB super family cl42959
krueppel associated box;
1-32 1.01e-08

krueppel associated box;


The actual alignment was detected with superfamily member smart00349:

Pssm-ID: 214630 [Multi-domain]  Cd Length: 61  Bit Score: 51.82  E-value: 1.01e-08
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1046870072    1 MLENYRNLASVGFPLLKPAVISQLEEGEDLES 32
Cdd:smart00349  30 MLENYSNLVSLGFQVPKPDLISQLEQGEEPWI 61
 
Name Accession Description Interval E-value
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
212-618 6.73e-14

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 74.35  E-value: 6.73e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046870072 212 KPFKCVECGKCFSYSSHYITHQTIHSGEKPYQCKV--CGKAFSVNGSLVRHQRIHTGEKPYQC--KECGTGFGCSSAYIT 287
Cdd:COG5048    32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYsgCDKSFSRPLELSRHLRTHHNNPSDLNskSLPLSNSKASSSSLS 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046870072 288 HQRTHTgekPYECSDCGKAFNVNAKLIQHQRIHTGEKPYECdVCGKGFRCSTQLRQHQSIHtgeKPHRCSECGKGFTKNA 367
Cdd:COG5048   112 SSSSNS---NDNNLLSSHSLPPSSRDPQLPDLLSISNLRNN-PLPGNNSSSVNTPQSNSLH---PPLPANSLSKDPSSNL 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046870072 368 KLIQHQRVHTGEKPYACSDCGKTFSAKGKLIQHQRIHTGERPYECSECGKSFRCNSQLRQHLRIHTGEKPYKCNECGKAF 447
Cdd:COG5048   185 SLLISSNVSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLPLTTNSQLSPKSLLSQSPSSLSSSDSSSSASESPRSS 264

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046870072 448 NVNAKLMQHRRTHTGE-------KPFECNECGKCFTSKRNLLDHQRT--HTGE--KPYQCKE--CGKAFSINAKLTRHQQ 514
Cdd:COG5048   265 LPTASSQSSSPNESDSssekgfsLPIKSKQCNISFSRSSPLTRHLRSvnHSGEslKPFSCPYslCGKLFSRNDALKRHIL 344

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046870072 515 IHTREKPFKCMEC-------EKAFSCSSDYIVHQRIHTGEKPFQC--SECGKAFHVNAHLIRHQRSHTGEKP--FRCMEC 583
Cdd:COG5048   345 LHTSISPAKEKLLnssskfsPLLNNEPPQSLQQYKDLKNDKKSETlsNSCIRNFKRDSNLSLHIITHLSFRPynCKNPPC 424

                         410       420       430
                  ....*....|....*....|....*....|....*
gi 1046870072 584 GKGFSLSSDCIIHQTVHTWKKPYVCNICGKTFRFS 618
Cdd:COG5048   425 SKSFNRHYNLIPHKKIHTNHAPLLCSILKSFRRDL 459
KRAB smart00349
krueppel associated box;
1-32 1.01e-08

krueppel associated box;


Pssm-ID: 214630 [Multi-domain]  Cd Length: 61  Bit Score: 51.82  E-value: 1.01e-08
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1046870072    1 MLENYRNLASVGFPLLKPAVISQLEEGEDLES 32
Cdd:smart00349  30 MLENYSNLVSLGFQVPKPDLISQLEQGEEPWI 61
zf-H2C2_2 pfam13465
Zinc-finger double domain;
425-448 4.74e-05

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 40.43  E-value: 4.74e-05
                          10        20
                  ....*....|....*....|....
gi 1046870072 425 LRQHLRIHTGEKPYKCNECGKAFN 448
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPECGKSFK 25
 
Name Accession Description Interval E-value
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
212-618 6.73e-14

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 74.35  E-value: 6.73e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046870072 212 KPFKCVECGKCFSYSSHYITHQTIHSGEKPYQCKV--CGKAFSVNGSLVRHQRIHTGEKPYQC--KECGTGFGCSSAYIT 287
Cdd:COG5048    32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYsgCDKSFSRPLELSRHLRTHHNNPSDLNskSLPLSNSKASSSSLS 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046870072 288 HQRTHTgekPYECSDCGKAFNVNAKLIQHQRIHTGEKPYECdVCGKGFRCSTQLRQHQSIHtgeKPHRCSECGKGFTKNA 367
Cdd:COG5048   112 SSSSNS---NDNNLLSSHSLPPSSRDPQLPDLLSISNLRNN-PLPGNNSSSVNTPQSNSLH---PPLPANSLSKDPSSNL 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046870072 368 KLIQHQRVHTGEKPYACSDCGKTFSAKGKLIQHQRIHTGERPYECSECGKSFRCNSQLRQHLRIHTGEKPYKCNECGKAF 447
Cdd:COG5048   185 SLLISSNVSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLPLTTNSQLSPKSLLSQSPSSLSSSDSSSSASESPRSS 264

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046870072 448 NVNAKLMQHRRTHTGE-------KPFECNECGKCFTSKRNLLDHQRT--HTGE--KPYQCKE--CGKAFSINAKLTRHQQ 514
Cdd:COG5048   265 LPTASSQSSSPNESDSssekgfsLPIKSKQCNISFSRSSPLTRHLRSvnHSGEslKPFSCPYslCGKLFSRNDALKRHIL 344

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046870072 515 IHTREKPFKCMEC-------EKAFSCSSDYIVHQRIHTGEKPFQC--SECGKAFHVNAHLIRHQRSHTGEKP--FRCMEC 583
Cdd:COG5048   345 LHTSISPAKEKLLnssskfsPLLNNEPPQSLQQYKDLKNDKKSETlsNSCIRNFKRDSNLSLHIITHLSFRPynCKNPPC 424

                         410       420       430
                  ....*....|....*....|....*....|....*
gi 1046870072 584 GKGFSLSSDCIIHQTVHTWKKPYVCNICGKTFRFS 618
Cdd:COG5048   425 SKSFNRHYNLIPHKKIHTNHAPLLCSILKSFRRDL 459
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
184-536 2.73e-10

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 62.79  E-value: 2.73e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046870072 184 KPYQCTECGKAFSVKAKFVWHQRLHNGEKPFKC--VECGKCFSYSSHYITHQTIHSGE---------------------- 239
Cdd:COG5048    32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCsySGCDKSFSRPLELSRHLRTHHNNpsdlnskslplsnskassssls 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046870072 240 -------KPYQCKVCGKAFSVNGSLVRHQRIHTGEKPYQCKECGTGFGCSSAY----------------------ITHQR 290
Cdd:COG5048   112 ssssnsnDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPLPGNNSSSVNTPQSnslhpplpanslskdpssnlslLISSN 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046870072 291 THTGEKPYECSDCGKAFNVNAKLIQHQRIHTGEKPYECDVCGKGFRCSTQLRQHQSIHTGEKPHRCSECGKGFTKNAKLI 370
Cdd:COG5048   192 VSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLPLTTNSQLSPKSLLSQSPSSLSSSDSSSSASESPRSSLPTASSQ 271

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046870072 371 QHQRVHTGE-------KPYACSDCGKTFSAKGKLIQHQR--IHTGE--RPYECSE--CGKSFRCNSQLRQHLRIHTGEKP 437
Cdd:COG5048   272 SSSPNESDSssekgfsLPIKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFSCPYslCGKLFSRNDALKRHILLHTSISP 351

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046870072 438 YKCNEC-------GKAFNVNAKLMQHRRTHTGEKPFEC--NECGKCFTSKRNLLDHQRTHTGEKPYQCK--ECGKAFSIN 506
Cdd:COG5048   352 AKEKLLnssskfsPLLNNEPPQSLQQYKDLKNDKKSETlsNSCIRNFKRDSNLSLHIITHLSFRPYNCKnpPCSKSFNRH 431

                         410       420       430
                  ....*....|....*....|....*....|
gi 1046870072 507 AKLTRHQQIHTREKPFKCMECEKAFSCSSD 536
Cdd:COG5048   432 YNLIPHKKIHTNHAPLLCSILKSFRRDLDL 461
KRAB smart00349
krueppel associated box;
1-32 1.01e-08

krueppel associated box;


Pssm-ID: 214630 [Multi-domain]  Cd Length: 61  Bit Score: 51.82  E-value: 1.01e-08
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1046870072    1 MLENYRNLASVGFPLLKPAVISQLEEGEDLES 32
Cdd:smart00349  30 MLENYSNLVSLGFQVPKPDLISQLEQGEEPWI 61
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
324-633 1.65e-06

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 50.85  E-value: 1.65e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046870072 324 KPYECDVCGKGFRCSTQLRQHQSIHTGEKPHRCS--ECGKGFTKNAKLIQHQRVHTGEKPYACSDCGKT----------- 390
Cdd:COG5048    32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSysGCDKSFSRPLELSRHLRTHHNNPSDLNSKSLPLsnskassssls 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046870072 391 ----FSAKGKLIQHQRIHTGERPYE-CSECGKSFRCNSQLRQHLRIHTGEK-------PYKCNECGKAFNVNAKLMQHRR 458
Cdd:COG5048   112 ssssNSNDNNLLSSHSLPPSSRDPQlPDLLSISNLRNNPLPGNNSSSVNTPqsnslhpPLPANSLSKDPSSNLSLLISSN 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046870072 459 THTGEKPFECNECGKCFTSKRNLLDHQRTHTGEKPYQCKECGKAFSINAKLTRHQQIHTREKPFKCMECEKAFSCSSDYI 538
Cdd:COG5048   192 VSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLPLTTNSQLSPKSLLSQSPSSLSSSDSSSSASESPRSSLPTASSQ 271

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046870072 539 VHQRIHTGE-------KPFQCSECGKAFHVNAHLIRHQRS--HTGE--KPFRCME--CGKGFSLSSDCIIHQTVHTWKKP 605
Cdd:COG5048   272 SSSPNESDSssekgfsLPIKSKQCNISFSRSSPLTRHLRSvnHSGEslKPFSCPYslCGKLFSRNDALKRHILLHTSISP 351

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1046870072 606 YVC--NICGKTFRFSF------QLSQHQDVHNEDKS 633
Cdd:COG5048   352 AKEklLNSSSKFSPLLnneppqSLQQYKDLKNDKKS 387
zf-H2C2_2 pfam13465
Zinc-finger double domain;
425-448 4.74e-05

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 40.43  E-value: 4.74e-05
                          10        20
                  ....*....|....*....|....
gi 1046870072 425 LRQHLRIHTGEKPYKCNECGKAFN 448
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPECGKSFK 25
zf-H2C2_2 pfam13465
Zinc-finger double domain;
480-504 1.70e-04

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 38.89  E-value: 1.70e-04
                          10        20
                  ....*....|....*....|....*
gi 1046870072 480 NLLDHQRTHTGEKPYQCKECGKAFS 504
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFK 25
zf-H2C2_2 pfam13465
Zinc-finger double domain;
453-477 1.89e-04

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 38.89  E-value: 1.89e-04
                          10        20
                  ....*....|....*....|....*
gi 1046870072 453 LMQHRRTHTGEKPFECNECGKCFTS 477
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPECGKSFKS 26
zf-H2C2_2 pfam13465
Zinc-finger double domain;
564-588 4.10e-04

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 37.74  E-value: 4.10e-04
                          10        20
                  ....*....|....*....|....*
gi 1046870072 564 HLIRHQRSHTGEKPFRCMECGKGFS 588
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFK 25
zf-H2C2_2 pfam13465
Zinc-finger double domain;
397-421 5.84e-04

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 37.35  E-value: 5.84e-04
                          10        20
                  ....*....|....*....|....*
gi 1046870072 397 LIQHQRIHTGERPYECSECGKSFRC 421
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPECGKSFKS 26
zf-H2C2_2 pfam13465
Zinc-finger double domain;
313-337 7.69e-04

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 36.97  E-value: 7.69e-04
                          10        20
                  ....*....|....*....|....*
gi 1046870072 313 LIQHQRIHTGEKPYECDVCGKGFRC 337
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPECGKSFKS 26
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
476-553 1.97e-03

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 41.22  E-value: 1.97e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046870072 476 TSKRNLLDHQRTHTGE----KPYQCKECGKAFSINAKLTRHQQIHTREKPFKCM--ECEKAFSCSSDYIVHQRIHTGEKP 549
Cdd:COG5048    12 NNSVLSSTPKSTLKSLsnapRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSysGCDKSFSRPLELSRHLRTHHNNPS 91


                  ....
gi 1046870072 550 FQCS 553
Cdd:COG5048    92 DLNS 95
zf-H2C2_2 pfam13465
Zinc-finger double domain;
288-308 2.35e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 35.81  E-value: 2.35e-03
                          10        20
                  ....*....|....*....|.
gi 1046870072 288 HQRTHTGEKPYECSDCGKAFN 308
Cdd:pfam13465   5 HMRTHTGEKPYKCPECGKSFK 25
zf-H2C2_2 pfam13465
Zinc-finger double domain;
540-559 2.50e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 35.81  E-value: 2.50e-03
                          10        20
                  ....*....|....*....|
gi 1046870072 540 HQRIHTGEKPFQCSECGKAF 559
Cdd:pfam13465   5 HMRTHTGEKPYKCPECGKSF 24
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 466-488 2.82e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 35.35  E-value: 2.82e-03
                          10        20
                  ....*....|....*....|...
gi 1046870072 466 FECNECGKCFTSKRNLLDHQRTH 488
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
zf-H2C2_2 pfam13465
Zinc-finger double domain;
341-365 2.95e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 35.42  E-value: 2.95e-03
                          10        20
                  ....*....|....*....|....*
gi 1046870072 341 LRQHQSIHTGEKPHRCSECGKGFTK 365
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPECGKSFKS 26
zf-H2C2_2 pfam13465
Zinc-finger double domain;
256-276 4.50e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 35.04  E-value: 4.50e-03
                          10        20
                  ....*....|....*....|.
gi 1046870072 256 SLVRHQRIHTGEKPYQCKECG 276
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECG 21
zf-H2C2_2 pfam13465
Zinc-finger double domain;
369-392 4.73e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 35.04  E-value: 4.73e-03
                          10        20
                  ....*....|....*....|....
gi 1046870072 369 LIQHQRVHTGEKPYACSDCGKTFS 392
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPECGKSFK 25
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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