NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1149708191|ref|XP_020180192|]
View 

uncharacterized protein LOC109765834 [Aegilops tauschii subsp. strangulata]

Protein Classification

DUF295 domain-containing protein( domain architecture ID 13289336)

DUF295 domain-containing protein similar to Arabidopsis thaliana F-box/kelch-repeat protein At2g24250

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF295 pfam03478
Protein of unknown function (DUF295); This domain is found in plant proteins of unknown ...
 327-398 2.64e-11

Protein of unknown function (DUF295); This domain is found in plant proteins of unknown function. It can be found in association with F-box domain pfam00646.


:

Pssm-ID: 460939 [Multi-domain]  Cd Length: 57  Bit Score: 58.37  E-value: 2.64e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1149708191 327 EEVKSLGGRTLFLGQERCVSVDAAKLPSVDGDCIYMLDfenapmsdsesvsmsDSEDMSVSDSRDKICVYNL 398
Cdd:pfam03478   1 VEVKSLGDRALFLGRNCSLSVSASDFPGLKGNCIYFLT---------------DDDDEVYKDEGRDIGVYDL 57
PLN03215 super family cl31986
ascorbic acid mannose pathway regulator 1; Provisional
 34-144 2.19e-03

ascorbic acid mannose pathway regulator 1; Provisional


The actual alignment was detected with superfamily member PLN03215:

Pssm-ID: 178754 [Multi-domain]  Cd Length: 373  Bit Score: 39.93  E-value: 2.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149708191  34 EWDSLPPELVQAVADRVLSttggVDAYMDMRAVCSTWRSAVA---KSSPFaavaglRFRPRhwvmLDLQPDDLND---EA 107
Cdd:PLN03215    3 DWSTLPEELLHMIAGRLFS----NVELKRFRSICRSWRSSVSgvgKKNPF------RTRPL----ILFNPINPSEtltDD 68

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1149708191 108 RLFLHVPTGRFRRLHLpaLRDNLVAGAADGLLVLADM 144
Cdd:PLN03215   69 RSYISRPGAFLSRAAF--FRVTLSSSPSKGWLIKSDM 103
 
Name Accession Description Interval E-value
DUF295 pfam03478
Protein of unknown function (DUF295); This domain is found in plant proteins of unknown ...
 327-398 2.64e-11

Protein of unknown function (DUF295); This domain is found in plant proteins of unknown function. It can be found in association with F-box domain pfam00646.


Pssm-ID: 460939 [Multi-domain]  Cd Length: 57  Bit Score: 58.37  E-value: 2.64e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1149708191 327 EEVKSLGGRTLFLGQERCVSVDAAKLPSVDGDCIYMLDfenapmsdsesvsmsDSEDMSVSDSRDKICVYNL 398
Cdd:pfam03478   1 VEVKSLGDRALFLGRNCSLSVSASDFPGLKGNCIYFLT---------------DDDDEVYKDEGRDIGVYDL 57
PLN03215 PLN03215
ascorbic acid mannose pathway regulator 1; Provisional
 34-144 2.19e-03

ascorbic acid mannose pathway regulator 1; Provisional


Pssm-ID: 178754 [Multi-domain]  Cd Length: 373  Bit Score: 39.93  E-value: 2.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149708191  34 EWDSLPPELVQAVADRVLSttggVDAYMDMRAVCSTWRSAVA---KSSPFaavaglRFRPRhwvmLDLQPDDLND---EA 107
Cdd:PLN03215    3 DWSTLPEELLHMIAGRLFS----NVELKRFRSICRSWRSSVSgvgKKNPF------RTRPL----ILFNPINPSEtltDD 68

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1149708191 108 RLFLHVPTGRFRRLHLpaLRDNLVAGAADGLLVLADM 144
Cdd:PLN03215   69 RSYISRPGAFLSRAAF--FRVTLSSSPSKGWLIKSDM 103
 
Name Accession Description Interval E-value
DUF295 pfam03478
Protein of unknown function (DUF295); This domain is found in plant proteins of unknown ...
 327-398 2.64e-11

Protein of unknown function (DUF295); This domain is found in plant proteins of unknown function. It can be found in association with F-box domain pfam00646.


Pssm-ID: 460939 [Multi-domain]  Cd Length: 57  Bit Score: 58.37  E-value: 2.64e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1149708191 327 EEVKSLGGRTLFLGQERCVSVDAAKLPSVDGDCIYMLDfenapmsdsesvsmsDSEDMSVSDSRDKICVYNL 398
Cdd:pfam03478   1 VEVKSLGDRALFLGRNCSLSVSASDFPGLKGNCIYFLT---------------DDDDEVYKDEGRDIGVYDL 57
PLN03215 PLN03215
ascorbic acid mannose pathway regulator 1; Provisional
 34-144 2.19e-03

ascorbic acid mannose pathway regulator 1; Provisional


Pssm-ID: 178754 [Multi-domain]  Cd Length: 373  Bit Score: 39.93  E-value: 2.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149708191  34 EWDSLPPELVQAVADRVLSttggVDAYMDMRAVCSTWRSAVA---KSSPFaavaglRFRPRhwvmLDLQPDDLND---EA 107
Cdd:PLN03215    3 DWSTLPEELLHMIAGRLFS----NVELKRFRSICRSWRSSVSgvgKKNPF------RTRPL----ILFNPINPSEtltDD 68

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1149708191 108 RLFLHVPTGRFRRLHLpaLRDNLVAGAADGLLVLADM 144
Cdd:PLN03215   69 RSYISRPGAFLSRAAF--FRVTLSSSPSKGWLIKSDM 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH