NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1207114155|ref|XP_021336213.1|]
View 

lysyl oxidase homolog 3B isoform X2 [Danio rerio]

Protein Classification

lysyl oxidase homolog( domain architecture ID 10641218)

lysyl oxidase homolog is a protein-lysine 6-oxidase that mediates the oxidation of peptidyl lysine residues to allysine in target proteins

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
Lysyl_oxidase pfam01186
Lysyl oxidase;
609-806 2.48e-145

Lysyl oxidase;


:

Pssm-ID: 460102  Cd Length: 204  Bit Score: 425.92  E-value: 2.48e-145
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207114155 609 DLVLNAPLVQQTTYIEDRPLHMLYCAAEEDCLSKSAA-----SANWPYGHRRLLRFSSQIHNIGRADFRPKAGRHSWVWH 683
Cdd:pfam01186   2 DLVPDAAEIQQSAYLEDRPMYYLQCAMEENCLASSAYqiqrnPSDWHYGTRRLLRFTARVKNVGTADFRPKLPKHAWEWH 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207114155 684 ACHGHYHSMDIFTHYDLMSANGTKVAEGHKASFCLEDTDCDEGVSKRYKCANFGEQGITVGCWDLYRHDIDCQWIDITDV 763
Cdd:pfam01186  82 QCHMHYHSMEVFAHYDVLDLNGTKVAEGHKASFCLEDTECDPGVSKRYACANFGDQGISVGCWDTYRHDIDCQWIDITDV 161
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1207114155 764 KPGNYILQVVINPNYEVSESDFTNNAMKCNCKYDGHRIWVHNC 806
Cdd:pfam01186 162 PPGNYILKVVINPEFKVAESDFDNNAARCDLRYTGHRVWVYNC 204
SR smart00202
Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR ...
50-149 8.01e-40

Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR domains that contain 6 conserved cysteines. May bind bacterial antigens in the protein MARCO.


:

Pssm-ID: 214555 [Multi-domain]  Cd Length: 101  Bit Score: 142.10  E-value: 8.01e-40
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207114155   50 RLSGFPRkHNEGRIEVFYKGEWGTICDDDFSLANAHVLCRQLGFVSATGWTHSAKYGKGAGKIWLDNVQCSGSERSVSVC 129
Cdd:smart00202   2 RLVGGGS-PCEGRVEVYHNGQWGTVCDDGWDLRDANVVCRQLGFGGAVSASGSAYFGPGSGPIWLDNVRCSGTEASLSDC 80
                           90       100
                   ....*....|....*....|
gi 1207114155  130 KSRGWGNSDCTHDEDAGVIC 149
Cdd:smart00202  81 PHSGWGSHNCSHGEDAGVVC 100
SR smart00202
Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR ...
335-434 3.90e-39

Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR domains that contain 6 conserved cysteines. May bind bacterial antigens in the protein MARCO.


:

Pssm-ID: 214555 [Multi-domain]  Cd Length: 101  Bit Score: 140.17  E-value: 3.90e-39
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207114155  335 RLKGGAKYGEGRVEVLKGSEWGTVCDDRWNLVSASVVCREMGFGSAKEALTGASMGKGLGPIHMNEVQCTGNERSLWSCR 414
Cdd:smart00202   2 RLVGGGSPCEGRVEVYHNGQWGTVCDDGWDLRDANVVCRQLGFGGAVSASGSAYFGPGSGPIWLDNVRCSGTEASLSDCP 81
                           90       100
                   ....*....|....*....|
gi 1207114155  415 YKNITAEDCKHTEDASVRCN 434
Cdd:smart00202  82 HSGWGSHNCSHGEDAGVVCS 101
SR smart00202
Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR ...
501-604 2.21e-28

Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR domains that contain 6 conserved cysteines. May bind bacterial antigens in the protein MARCO.


:

Pssm-ID: 214555 [Multi-domain]  Cd Length: 101  Bit Score: 109.35  E-value: 2.21e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207114155  501 VRLSGGRSPYEGRVEVRVGQRWGSVCSEGWSTKEAMVLCRQLGLGFSmhAITETWYWDSSNVTDMVMSGVKCTGDEMSIS 580
Cdd:smart00202   1 VRLVGGGSPCEGRVEVYHNGQWGTVCDDGWDLRDANVVCRQLGFGGA--VSASGSAYFGPGSGPIWLDNVRCSGTEASLS 78
                           90       100
                   ....*....|....*....|....*.
gi 1207114155  581 QCQHH--RTVNCQKaaaRFAAGVICS 604
Cdd:smart00202  79 DCPHSgwGSHNCSH---GEDAGVVCS 101
SR smart00202
Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR ...
190-312 1.80e-13

Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR domains that contain 6 conserved cysteines. May bind bacterial antigens in the protein MARCO.


:

Pssm-ID: 214555 [Multi-domain]  Cd Length: 101  Bit Score: 66.98  E-value: 1.80e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207114155  190 VTEGVVEVKNKDGWAQICDIGWTPKNTHVVCGMMGFPhekkvnknfykqeskikaitktsskpkRGKSAAAKRLYAERQK 269
Cdd:smart00202   9 PCEGRVEVYHNGQWGTVCDDGWDLRDANVVCRQLGFG---------------------------GAVSASGSAYFGPGSG 61
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 1207114155  270 NFFLVHsVACLGTEVHLAACPLEFNYGNateSCPGGMPAVVSC 312
Cdd:smart00202  62 PIWLDN-VRCSGTEASLSDCPHSGWGSH---NCSHGEDAGVVC 100
 
Name Accession Description Interval E-value
Lysyl_oxidase pfam01186
Lysyl oxidase;
609-806 2.48e-145

Lysyl oxidase;


Pssm-ID: 460102  Cd Length: 204  Bit Score: 425.92  E-value: 2.48e-145
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207114155 609 DLVLNAPLVQQTTYIEDRPLHMLYCAAEEDCLSKSAA-----SANWPYGHRRLLRFSSQIHNIGRADFRPKAGRHSWVWH 683
Cdd:pfam01186   2 DLVPDAAEIQQSAYLEDRPMYYLQCAMEENCLASSAYqiqrnPSDWHYGTRRLLRFTARVKNVGTADFRPKLPKHAWEWH 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207114155 684 ACHGHYHSMDIFTHYDLMSANGTKVAEGHKASFCLEDTDCDEGVSKRYKCANFGEQGITVGCWDLYRHDIDCQWIDITDV 763
Cdd:pfam01186  82 QCHMHYHSMEVFAHYDVLDLNGTKVAEGHKASFCLEDTECDPGVSKRYACANFGDQGISVGCWDTYRHDIDCQWIDITDV 161
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1207114155 764 KPGNYILQVVINPNYEVSESDFTNNAMKCNCKYDGHRIWVHNC 806
Cdd:pfam01186 162 PPGNYILKVVINPEFKVAESDFDNNAARCDLRYTGHRVWVYNC 204
SR smart00202
Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR ...
50-149 8.01e-40

Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR domains that contain 6 conserved cysteines. May bind bacterial antigens in the protein MARCO.


Pssm-ID: 214555 [Multi-domain]  Cd Length: 101  Bit Score: 142.10  E-value: 8.01e-40
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207114155   50 RLSGFPRkHNEGRIEVFYKGEWGTICDDDFSLANAHVLCRQLGFVSATGWTHSAKYGKGAGKIWLDNVQCSGSERSVSVC 129
Cdd:smart00202   2 RLVGGGS-PCEGRVEVYHNGQWGTVCDDGWDLRDANVVCRQLGFGGAVSASGSAYFGPGSGPIWLDNVRCSGTEASLSDC 80
                           90       100
                   ....*....|....*....|
gi 1207114155  130 KSRGWGNSDCTHDEDAGVIC 149
Cdd:smart00202  81 PHSGWGSHNCSHGEDAGVVC 100
SR smart00202
Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR ...
335-434 3.90e-39

Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR domains that contain 6 conserved cysteines. May bind bacterial antigens in the protein MARCO.


Pssm-ID: 214555 [Multi-domain]  Cd Length: 101  Bit Score: 140.17  E-value: 3.90e-39
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207114155  335 RLKGGAKYGEGRVEVLKGSEWGTVCDDRWNLVSASVVCREMGFGSAKEALTGASMGKGLGPIHMNEVQCTGNERSLWSCR 414
Cdd:smart00202   2 RLVGGGSPCEGRVEVYHNGQWGTVCDDGWDLRDANVVCRQLGFGGAVSASGSAYFGPGSGPIWLDNVRCSGTEASLSDCP 81
                           90       100
                   ....*....|....*....|
gi 1207114155  415 YKNITAEDCKHTEDASVRCN 434
Cdd:smart00202  82 HSGWGSHNCSHGEDAGVVCS 101
SRCR pfam00530
Scavenger receptor cysteine-rich domain; These domains are disulphide rich extracellular ...
58-150 2.44e-33

Scavenger receptor cysteine-rich domain; These domains are disulphide rich extracellular domains. These domains are found in several extracellular receptors and may be involved in protein-protein interactions.


Pssm-ID: 459844  Cd Length: 98  Bit Score: 123.64  E-value: 2.44e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207114155  58 HNEGRIEVFYKGEWGTICDDDFSLANAHVLCRQLGFVSA-TGWTHSAKYGKG-AGKIWLDNVQCSGSERSVSVCKSRGWG 135
Cdd:pfam00530   4 PCEGRVEVYHNGSWGTVCDDGWDLRDAHVVCRQLGCGGAvSAPSGCSYFGPGsTGPIWLDDVRCSGNETSLWQCPHRPWG 83
                          90
                  ....*....|....*
gi 1207114155 136 NSDCTHDEDAGVICK 150
Cdd:pfam00530  84 NHNCSHSEDAGVICS 98
SRCR pfam00530
Scavenger receptor cysteine-rich domain; These domains are disulphide rich extracellular ...
339-434 5.96e-32

Scavenger receptor cysteine-rich domain; These domains are disulphide rich extracellular domains. These domains are found in several extracellular receptors and may be involved in protein-protein interactions.


Pssm-ID: 459844  Cd Length: 98  Bit Score: 119.40  E-value: 5.96e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207114155 339 GAKYGEGRVEVLKGSEWGTVCDDRWNLVSASVVCREMGFGSAKEALTGAS-MGKGL-GPIHMNEVQCTGNERSLWSCRYK 416
Cdd:pfam00530   1 GSSPCEGRVEVYHNGSWGTVCDDGWDLRDAHVVCRQLGCGGAVSAPSGCSyFGPGStGPIWLDDVRCSGNETSLWQCPHR 80
                          90
                  ....*....|....*...
gi 1207114155 417 NITAEDCKHTEDASVRCN 434
Cdd:pfam00530  81 PWGNHNCSHSEDAGVICS 98
SR smart00202
Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR ...
501-604 2.21e-28

Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR domains that contain 6 conserved cysteines. May bind bacterial antigens in the protein MARCO.


Pssm-ID: 214555 [Multi-domain]  Cd Length: 101  Bit Score: 109.35  E-value: 2.21e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207114155  501 VRLSGGRSPYEGRVEVRVGQRWGSVCSEGWSTKEAMVLCRQLGLGFSmhAITETWYWDSSNVTDMVMSGVKCTGDEMSIS 580
Cdd:smart00202   1 VRLVGGGSPCEGRVEVYHNGQWGTVCDDGWDLRDANVVCRQLGFGGA--VSASGSAYFGPGSGPIWLDNVRCSGTEASLS 78
                           90       100
                   ....*....|....*....|....*.
gi 1207114155  581 QCQHH--RTVNCQKaaaRFAAGVICS 604
Cdd:smart00202  79 DCPHSgwGSHNCSH---GEDAGVVCS 101
SRCR pfam00530
Scavenger receptor cysteine-rich domain; These domains are disulphide rich extracellular ...
506-604 1.67e-23

Scavenger receptor cysteine-rich domain; These domains are disulphide rich extracellular domains. These domains are found in several extracellular receptors and may be involved in protein-protein interactions.


Pssm-ID: 459844  Cd Length: 98  Bit Score: 95.52  E-value: 1.67e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207114155 506 GRSPYEGRVEVRVGQRWGSVCSEGWSTKEAMVLCRQLGLGFSMHAITETWYWDSSNVTDMVMSGVKCTGDEMSISQCQHH 585
Cdd:pfam00530   1 GSSPCEGRVEVYHNGSWGTVCDDGWDLRDAHVVCRQLGCGGAVSAPSGCSYFGPGSTGPIWLDDVRCSGNETSLWQCPHR 80
                          90       100
                  ....*....|....*....|.
gi 1207114155 586 RTV--NCQkaaARFAAGVICS 604
Cdd:pfam00530  81 PWGnhNCS---HSEDAGVICS 98
SR smart00202
Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR ...
190-312 1.80e-13

Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR domains that contain 6 conserved cysteines. May bind bacterial antigens in the protein MARCO.


Pssm-ID: 214555 [Multi-domain]  Cd Length: 101  Bit Score: 66.98  E-value: 1.80e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207114155  190 VTEGVVEVKNKDGWAQICDIGWTPKNTHVVCGMMGFPhekkvnknfykqeskikaitktsskpkRGKSAAAKRLYAERQK 269
Cdd:smart00202   9 PCEGRVEVYHNGQWGTVCDDGWDLRDANVVCRQLGFG---------------------------GAVSASGSAYFGPGSG 61
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 1207114155  270 NFFLVHsVACLGTEVHLAACPLEFNYGNateSCPGGMPAVVSC 312
Cdd:smart00202  62 PIWLDN-VRCSGTEASLSDCPHSGWGSH---NCSHGEDAGVVC 100
SRCR pfam00530
Scavenger receptor cysteine-rich domain; These domains are disulphide rich extracellular ...
192-312 1.98e-09

Scavenger receptor cysteine-rich domain; These domains are disulphide rich extracellular domains. These domains are found in several extracellular receptors and may be involved in protein-protein interactions.


Pssm-ID: 459844  Cd Length: 98  Bit Score: 55.46  E-value: 1.98e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207114155 192 EGVVEVKNKDGWAQICDIGWTPKNTHVVCGMMGFPHekkvnknfykqeskikAITKTSSKPKRGKSAaakrlyaerqKNF 271
Cdd:pfam00530   6 EGRVEVYHNGSWGTVCDDGWDLRDAHVVCRQLGCGG----------------AVSAPSGCSYFGPGS----------TGP 59
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1207114155 272 FLVHSVACLGTEVHLAACPLEfnyGNATESCPGGMPAVVSC 312
Cdd:pfam00530  60 IWLDDVRCSGNETSLWQCPHR---PWGNHNCSHSEDAGVIC 97
 
Name Accession Description Interval E-value
Lysyl_oxidase pfam01186
Lysyl oxidase;
609-806 2.48e-145

Lysyl oxidase;


Pssm-ID: 460102  Cd Length: 204  Bit Score: 425.92  E-value: 2.48e-145
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207114155 609 DLVLNAPLVQQTTYIEDRPLHMLYCAAEEDCLSKSAA-----SANWPYGHRRLLRFSSQIHNIGRADFRPKAGRHSWVWH 683
Cdd:pfam01186   2 DLVPDAAEIQQSAYLEDRPMYYLQCAMEENCLASSAYqiqrnPSDWHYGTRRLLRFTARVKNVGTADFRPKLPKHAWEWH 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207114155 684 ACHGHYHSMDIFTHYDLMSANGTKVAEGHKASFCLEDTDCDEGVSKRYKCANFGEQGITVGCWDLYRHDIDCQWIDITDV 763
Cdd:pfam01186  82 QCHMHYHSMEVFAHYDVLDLNGTKVAEGHKASFCLEDTECDPGVSKRYACANFGDQGISVGCWDTYRHDIDCQWIDITDV 161
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1207114155 764 KPGNYILQVVINPNYEVSESDFTNNAMKCNCKYDGHRIWVHNC 806
Cdd:pfam01186 162 PPGNYILKVVINPEFKVAESDFDNNAARCDLRYTGHRVWVYNC 204
SR smart00202
Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR ...
50-149 8.01e-40

Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR domains that contain 6 conserved cysteines. May bind bacterial antigens in the protein MARCO.


Pssm-ID: 214555 [Multi-domain]  Cd Length: 101  Bit Score: 142.10  E-value: 8.01e-40
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207114155   50 RLSGFPRkHNEGRIEVFYKGEWGTICDDDFSLANAHVLCRQLGFVSATGWTHSAKYGKGAGKIWLDNVQCSGSERSVSVC 129
Cdd:smart00202   2 RLVGGGS-PCEGRVEVYHNGQWGTVCDDGWDLRDANVVCRQLGFGGAVSASGSAYFGPGSGPIWLDNVRCSGTEASLSDC 80
                           90       100
                   ....*....|....*....|
gi 1207114155  130 KSRGWGNSDCTHDEDAGVIC 149
Cdd:smart00202  81 PHSGWGSHNCSHGEDAGVVC 100
SR smart00202
Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR ...
335-434 3.90e-39

Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR domains that contain 6 conserved cysteines. May bind bacterial antigens in the protein MARCO.


Pssm-ID: 214555 [Multi-domain]  Cd Length: 101  Bit Score: 140.17  E-value: 3.90e-39
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207114155  335 RLKGGAKYGEGRVEVLKGSEWGTVCDDRWNLVSASVVCREMGFGSAKEALTGASMGKGLGPIHMNEVQCTGNERSLWSCR 414
Cdd:smart00202   2 RLVGGGSPCEGRVEVYHNGQWGTVCDDGWDLRDANVVCRQLGFGGAVSASGSAYFGPGSGPIWLDNVRCSGTEASLSDCP 81
                           90       100
                   ....*....|....*....|
gi 1207114155  415 YKNITAEDCKHTEDASVRCN 434
Cdd:smart00202  82 HSGWGSHNCSHGEDAGVVCS 101
SRCR pfam00530
Scavenger receptor cysteine-rich domain; These domains are disulphide rich extracellular ...
58-150 2.44e-33

Scavenger receptor cysteine-rich domain; These domains are disulphide rich extracellular domains. These domains are found in several extracellular receptors and may be involved in protein-protein interactions.


Pssm-ID: 459844  Cd Length: 98  Bit Score: 123.64  E-value: 2.44e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207114155  58 HNEGRIEVFYKGEWGTICDDDFSLANAHVLCRQLGFVSA-TGWTHSAKYGKG-AGKIWLDNVQCSGSERSVSVCKSRGWG 135
Cdd:pfam00530   4 PCEGRVEVYHNGSWGTVCDDGWDLRDAHVVCRQLGCGGAvSAPSGCSYFGPGsTGPIWLDDVRCSGNETSLWQCPHRPWG 83
                          90
                  ....*....|....*
gi 1207114155 136 NSDCTHDEDAGVICK 150
Cdd:pfam00530  84 NHNCSHSEDAGVICS 98
SRCR pfam00530
Scavenger receptor cysteine-rich domain; These domains are disulphide rich extracellular ...
339-434 5.96e-32

Scavenger receptor cysteine-rich domain; These domains are disulphide rich extracellular domains. These domains are found in several extracellular receptors and may be involved in protein-protein interactions.


Pssm-ID: 459844  Cd Length: 98  Bit Score: 119.40  E-value: 5.96e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207114155 339 GAKYGEGRVEVLKGSEWGTVCDDRWNLVSASVVCREMGFGSAKEALTGAS-MGKGL-GPIHMNEVQCTGNERSLWSCRYK 416
Cdd:pfam00530   1 GSSPCEGRVEVYHNGSWGTVCDDGWDLRDAHVVCRQLGCGGAVSAPSGCSyFGPGStGPIWLDDVRCSGNETSLWQCPHR 80
                          90
                  ....*....|....*...
gi 1207114155 417 NITAEDCKHTEDASVRCN 434
Cdd:pfam00530  81 PWGNHNCSHSEDAGVICS 98
SR smart00202
Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR ...
501-604 2.21e-28

Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR domains that contain 6 conserved cysteines. May bind bacterial antigens in the protein MARCO.


Pssm-ID: 214555 [Multi-domain]  Cd Length: 101  Bit Score: 109.35  E-value: 2.21e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207114155  501 VRLSGGRSPYEGRVEVRVGQRWGSVCSEGWSTKEAMVLCRQLGLGFSmhAITETWYWDSSNVTDMVMSGVKCTGDEMSIS 580
Cdd:smart00202   1 VRLVGGGSPCEGRVEVYHNGQWGTVCDDGWDLRDANVVCRQLGFGGA--VSASGSAYFGPGSGPIWLDNVRCSGTEASLS 78
                           90       100
                   ....*....|....*....|....*.
gi 1207114155  581 QCQHH--RTVNCQKaaaRFAAGVICS 604
Cdd:smart00202  79 DCPHSgwGSHNCSH---GEDAGVVCS 101
SRCR pfam00530
Scavenger receptor cysteine-rich domain; These domains are disulphide rich extracellular ...
506-604 1.67e-23

Scavenger receptor cysteine-rich domain; These domains are disulphide rich extracellular domains. These domains are found in several extracellular receptors and may be involved in protein-protein interactions.


Pssm-ID: 459844  Cd Length: 98  Bit Score: 95.52  E-value: 1.67e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207114155 506 GRSPYEGRVEVRVGQRWGSVCSEGWSTKEAMVLCRQLGLGFSMHAITETWYWDSSNVTDMVMSGVKCTGDEMSISQCQHH 585
Cdd:pfam00530   1 GSSPCEGRVEVYHNGSWGTVCDDGWDLRDAHVVCRQLGCGGAVSAPSGCSYFGPGSTGPIWLDDVRCSGNETSLWQCPHR 80
                          90       100
                  ....*....|....*....|.
gi 1207114155 586 RTV--NCQkaaARFAAGVICS 604
Cdd:pfam00530  81 PWGnhNCS---HSEDAGVICS 98
SR smart00202
Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR ...
190-312 1.80e-13

Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR domains that contain 6 conserved cysteines. May bind bacterial antigens in the protein MARCO.


Pssm-ID: 214555 [Multi-domain]  Cd Length: 101  Bit Score: 66.98  E-value: 1.80e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207114155  190 VTEGVVEVKNKDGWAQICDIGWTPKNTHVVCGMMGFPhekkvnknfykqeskikaitktsskpkRGKSAAAKRLYAERQK 269
Cdd:smart00202   9 PCEGRVEVYHNGQWGTVCDDGWDLRDANVVCRQLGFG---------------------------GAVSASGSAYFGPGSG 61
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 1207114155  270 NFFLVHsVACLGTEVHLAACPLEFNYGNateSCPGGMPAVVSC 312
Cdd:smart00202  62 PIWLDN-VRCSGTEASLSDCPHSGWGSH---NCSHGEDAGVVC 100
SRCR pfam00530
Scavenger receptor cysteine-rich domain; These domains are disulphide rich extracellular ...
192-312 1.98e-09

Scavenger receptor cysteine-rich domain; These domains are disulphide rich extracellular domains. These domains are found in several extracellular receptors and may be involved in protein-protein interactions.


Pssm-ID: 459844  Cd Length: 98  Bit Score: 55.46  E-value: 1.98e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207114155 192 EGVVEVKNKDGWAQICDIGWTPKNTHVVCGMMGFPHekkvnknfykqeskikAITKTSSKPKRGKSAaakrlyaerqKNF 271
Cdd:pfam00530   6 EGRVEVYHNGSWGTVCDDGWDLRDAHVVCRQLGCGG----------------AVSAPSGCSYFGPGS----------TGP 59
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1207114155 272 FLVHSVACLGTEVHLAACPLEfnyGNATESCPGGMPAVVSC 312
Cdd:pfam00530  60 IWLDDVRCSGNETSLWQCPHR---PWGNHNCSHSEDAGVIC 97
SRCR_2 pfam15494
Scavenger receptor cysteine-rich domain; SRCR_2 is a scavenger receptor cysteine-rich domain ...
513-543 1.34e-03

Scavenger receptor cysteine-rich domain; SRCR_2 is a scavenger receptor cysteine-rich domain family found largely on vertebrate sequences up-stream of the trypsin-like transmembrane serine protease, Spinesin.


Pssm-ID: 464747  Cd Length: 99  Bit Score: 38.85  E-value: 1.34e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1207114155 513 RVEVRVGQRWGSVCSEGWSTKEAMVLCRQLG 543
Cdd:pfam15494   7 QVYSSARPSWLPVCSDDWNPAYGRAACQQLG 37
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH